BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA140937|DMAA40937 CK01027.5prime CK Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone CK01027 5prime, mRNA sequence. (340 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG4357-RB feature: mRNA loc=3L:complement(12326193..12326504,123... 513 e-145 CG4357-RA feature: mRNA loc=3L:complement(12326193..12326504,123... 513 e-145 >CG4357-RB feature: mRNA loc=3L:complement(12326193..12326504,12326596..12326831, 12327484..12327713,12327782..12327879,12329308..12330118, 12330181..12330316,12330517..12330626,12330687..12330829, 12330902..12331067,12331125..12331267,12331332..12331446, 12331504..12331757,12331835..12332093,12333548..12333662, 12333984..12334163,12336686..12337191, 12345200..12345379);ID=FBan0004357;gene_id=FBgn0036279;ge ne_sym=CG4357;sym=CG4357;scaffold=AE003541;len=3994 Length = 3994 Score = 513 bits (259), Expect = e-145 Identities = 262/263 (99%) Strand = Plus / Plus Query: 1 gcgccatcctctgtgtggccgtcatgttccttatctcgtgggccacagcgctcatcacct 60 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 2336 gcgccatcctctgtgtggccgtcatgttcctcatctcgtgggccacagcgctcatcacct 2395 Query: 61 ttgccgccgtgctggctctgtacttaattgtggcctaccggaaaccggatgtcaactggg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2396 ttgccgccgtgctggctctgtacttaattgtggcctaccggaaaccggatgtcaactggg 2455 Query: 121 gctccaccacccaggctcagacgtacaagaacgccctgatgtcggtgcagcagctgaaca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2456 gctccaccacccaggctcagacgtacaagaacgccctgatgtcggtgcagcagctgaaca 2515 Query: 181 atgtggaggagcacgtgaagaactaccggccacagatcctggttctttccggtttgccca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2516 atgtggaggagcacgtgaagaactaccggccacagatcctggttctttccggtttgccca 2575 Query: 241 acacacggccggtgctcgtcgac 263 ||||||||||||||||||||||| Sbjct: 2576 acacacggccggtgctcgtcgac 2598 >CG4357-RA feature: mRNA loc=3L:complement(12326193..12326504,12326596..12326831, 12327484..12327713,12327782..12327879,12329308..12330118, 12330181..12330316,12330517..12330626,12330687..12330829, 12330902..12331067,12331125..12331267,12331332..12331446, 12331504..12331757,12331835..12332093,12333548..12333662, 12333984..12334163,12336686..12337191, 12348870..12348986);ID=FBan0004357;gene_id=FBgn0036279;ge ne_sym=CG4357;sym=CG4357;scaffold=AE003541;len=3931 Length = 3931 Score = 513 bits (259), Expect = e-145 Identities = 262/263 (99%) Strand = Plus / Plus Query: 1 gcgccatcctctgtgtggccgtcatgttccttatctcgtgggccacagcgctcatcacct 60 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 2273 gcgccatcctctgtgtggccgtcatgttcctcatctcgtgggccacagcgctcatcacct 2332 Query: 61 ttgccgccgtgctggctctgtacttaattgtggcctaccggaaaccggatgtcaactggg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2333 ttgccgccgtgctggctctgtacttaattgtggcctaccggaaaccggatgtcaactggg 2392 Query: 121 gctccaccacccaggctcagacgtacaagaacgccctgatgtcggtgcagcagctgaaca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2393 gctccaccacccaggctcagacgtacaagaacgccctgatgtcggtgcagcagctgaaca 2452 Query: 181 atgtggaggagcacgtgaagaactaccggccacagatcctggttctttccggtttgccca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2453 atgtggaggagcacgtgaagaactaccggccacagatcctggttctttccggtttgccca 2512 Query: 241 acacacggccggtgctcgtcgac 263 ||||||||||||||||||||||| Sbjct: 2513 acacacggccggtgctcgtcgac 2535 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8677 Number of Sequences: 18737 Number of extensions: 8677 Number of successful extensions: 671 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 669 Number of HSP's gapped (non-prelim): 2 length of query: 340 length of database: 41,270,998 effective HSP length: 16 effective length of query: 324 effective length of database: 40,971,206 effective search space: 13274670744 effective search space used: 13274670744 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA141204|DMAA41204 CK01340.5prime CK Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone CK01340 5prime, mRNA sequence. (649 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG4686-RA feature: mRNA loc=3R:join(15690196..15690664,15690728.... 624 e-178 >CG4686-RA feature: mRNA loc=3R:join(15690196..15690664,15690728..15691036, 15692153..15692538);ID=FBan0004686;gene_id=FBgn0038739;ge ne_sym=CG4686;sym=CG4686;scaffold=AE003728;len=1164 Length = 1164 Score = 624 bits (315), Expect = e-178 Identities = 368/386 (95%), Gaps = 3/386 (0%) Strand = Plus / Minus Query: 257 tatatacactaananattgtacgcatttaactcaaaagtatcttccattagctgcaaagc 316 |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1164 tatatacactaagagattgtacgcatttaactcaaaagtatcttccattagctgcaaagc 1105 Query: 317 cctcactataattattgtaaataatggctaaaagcggatatagtaactcatatttagttg 376 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1104 cctcactataattattgtaaataatggctaaaagcggatatagtaactcatatttagttg 1045 Query: 377 atgttgtattatgttanatnatgttgtatgttaganttggcttaactttatttgcctctg 436 |||||||||||||||| || ||||||||||||||| |||||||| ||||||||||||||| Sbjct: 1044 atgttgtattatgttagatgatgttgtatgttagagttggcttagctttatttgcctctg 985 Query: 437 cactaaattgcagttcagcatgtgctacatggaatatanataggtggcctgccccgcgca 496 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 984 cactaaattgcagttcagcatgtgctacatggaatatagataggtggcctgccccgcgca 925 Query: 497 tcctacaggaccagcgacagccacgcggccatcangcanaatcctccgacngtcgcgtta 556 |||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||| || Sbjct: 924 tcctacaggaccagcgacagccacgcggccatcaggcagaatcctccgacggtcgcg-ta 866 Query: 557 cggttgcanacgcttctccccantcaaagcgcggtnntacatgcagccgctgaaaagca- 615 |||||||| ||||||||| ||| |||||||||||| |||||||||||||||||||||| Sbjct: 865 cggttgcagacgcttctcgccagtcaaagcgcggtagtacatgcagccgctgaaaagcat 806 Query: 616 catgccccgtaatcatcaaagtgcca 641 |||| ||||||||||||||||||||| Sbjct: 805 catg-cccgtaatcatcaaagtgcca 781 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,866 Number of Sequences: 18737 Number of extensions: 10866 Number of successful extensions: 264 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 261 Number of HSP's gapped (non-prelim): 1 length of query: 649 length of database: 41,270,998 effective HSP length: 17 effective length of query: 632 effective length of database: 40,952,469 effective search space: 25881960408 effective search space used: 25881960408 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA141235|DMAA41235 CK01423.5prime CK Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone CK01423 5prime, mRNA sequence. (690 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG33253-RA feature: mRNA loc=X:join(18914384..18914685,18916650.... 1138 0.0 >CG33253-RA feature: mRNA loc=X:join(18914384..18914685,18916650..18917166, 18917238..18917403, 18917494..18918239);ID=FBan0033253;gene_id=FBgn0053253;ge ne_sym=CG33253;sym=CG33253;scaffold=AE003511;len=1731 Length = 1731 Score = 1138 bits (574), Expect = 0.0 Identities = 622/639 (97%), Gaps = 2/639 (0%) Strand = Plus / Plus Query: 54 ggatggggcgactgcgcagcggcggagcccgtggtcccggggtcttctttgtgctgccct 113 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 438 ggatggggcgactgcgcagcggcggagcccgtggtcccggggtcttctttgtgctgccct 497 Query: 114 gcgtggacgactactatccggtggatctgcgcaccgtctcctttgacgtgccgccgcagg 173 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 498 gcgtggacgactactatccggtggatctgcgcaccgtctcctttgacgtgccgccgcagg 557 Query: 174 aggtgctctccaaggactcggttactgtgacggtagatgcggttgtctactaccgcatca 233 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 558 aggtgctctccaaggactcggttactgtgacggtagatgcggttgtctactaccgcatca 617 Query: 234 gcgatcccctcaaggcggtcatccaggtgtacaattacagccattcgacgagtctcctgg 293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 618 gcgatcccctcaaggcggtcatccaggtgtacaattacagccattcgacgagtctcctgg 677 Query: 294 cggccaccacgctgcgcaatgtgctcggcaccagaaatctgtccgagctgctgaccgaac 353 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 678 cggccaccacgctgcgcaatgtgctcggcaccaggaatctgtccgagctgctgaccgaac 737 Query: 354 gcgagaccatctcgcacaccatgcagatgtccctggacnaggccaccgatccctggggcg 413 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 738 gcgagaccatctcgcacaccatgcagatgtccctggacgaggccaccgatccctggggcg 797 Query: 414 ttaaggtggagcgcgtgganatcaaggacgtatccttgccaactgccctccancgggcga 473 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct: 798 ttaaggtggagcgcgtggagatcaaggacgtatccttgccaactgccctccagcgggcga 857 Query: 474 tggccgccgaggcggangcancganggaggcgcgggccaangtcattgccgccgagggcg 533 |||||||||||||||| ||| ||| ||||||||||||||| ||||||||||||||||||| Sbjct: 858 tggccgccgaggcggaggcagcgagggaggcgcgggccaaggtcattgccgccgagggcg 917 Query: 534 aaatgaa-tcgtcgagggctctgcgcgangc-tccgaaatcatctcggccagtccatccg 591 | ||||| |||||||||||||||||||| || ||||| |||||||||||||||||||||| Sbjct: 918 agatgaagtcgtcgagggctctgcgcgaggcttccgagatcatctcggccagtccatccg 977 Query: 592 ccctgcagttgcgatacttgcaaacactgancancatttcaaccgagaaaaattcgacca 651 |||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||| Sbjct: 978 ccctgcagttgcgatacttgcaaacactgagcagcatttcaaccgagaagaattcgacca 1037 Query: 652 tcatcttcccgctgcccatgganctgctcacgcccttcc 690 |||||||||||||||||||||| |||||||||||||||| Sbjct: 1038 tcatcttcccgctgcccatggagctgctcacgcccttcc 1076 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,254 Number of Sequences: 18737 Number of extensions: 16254 Number of successful extensions: 426 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 423 Number of HSP's gapped (non-prelim): 1 length of query: 690 length of database: 41,270,998 effective HSP length: 17 effective length of query: 673 effective length of database: 40,952,469 effective search space: 27561011637 effective search space used: 27561011637 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA141236|DMAA41236 CK01423.3prime CK Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone CK01423 3prime, mRNA sequence. (717 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG33253-RA feature: mRNA loc=X:join(18914384..18914685,18916650.... 597 e-170 >CG33253-RA feature: mRNA loc=X:join(18914384..18914685,18916650..18917166, 18917238..18917403, 18917494..18918239);ID=FBan0033253;gene_id=FBgn0053253;ge ne_sym=CG33253;sym=CG33253;scaffold=AE003511;len=1731 Length = 1731 Score = 597 bits (301), Expect = e-170 Identities = 354/370 (95%), Gaps = 2/370 (0%) Strand = Plus / Minus Query: 225 tttatttttaagtccgaaccatgtttgaatctctccaaaatctagggaattccatggcac 284 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1505 tttatttttaagtccgaaccatgtttgaatctctccagaatctagggaattccatggcac 1446 Query: 285 tttcattcgaattcattggtgactcattttccggattttccggccagttccgctttctgt 344 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 1445 tttcattcgaattcattggtgactcattttccggattttccggacagttccgctttctgt 1386 Query: 345 cgctgctgccgccgttccactaaagcaagaaacccacgatgtcgtcatcgtcatccaccg 404 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| Sbjct: 1385 cgctgctgccgccgttccactagagcaagaaacccacgatgtcgtcatcgtcatccgccg 1326 Query: 405 ctcccgctgcagccgctccgcttcgctgttgcttctgctgacgctgcagctcgcagcgat 464 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1325 ctcccgctgcagccgctccgcttcgctgttgcttctgctgacgctgcagctcgcagcgat 1266 Query: 465 gcagtgcctccaaatatggttgcagcaccgacatcga-cgtcactgggtggtgttggtgc 523 |||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||| Sbjct: 1265 gcagtgcctccagatatggttgcagcaccgacatcgagcgtcact-ggtggtgttggtgc 1207 Query: 524 tggtgtcnaaggaatggcgtgccangaaccccaggatgttgttgttgttggtgctgangc 583 |||||| | ||| |||||||||| || || |||||||||||||||||||||||||| || Sbjct: 1206 gggtgtcgatggagtggcgtgccaggagccgcaggatgttgttgttgttggtgctgatgc 1147 Query: 584 tgctggtgtt 593 ||||| |||| Sbjct: 1146 tgctgctgtt 1137 Score = 400 bits (202), Expect = e-111 Identities = 205/206 (99%) Strand = Plus / Minus Query: 1 ctgaatcatttggtttatttaaatggttagcttttaccctggtttgtagttagctattgt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1723 ctgaatcatttggtttatttaaatggttagcttttaccctggtttgtagttagctattgt 1664 Query: 61 tattaattcttaagatacaaacaaataatattggttattttaaatataacgtctctactt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1663 tattaattcttaagatacaaacaaataatattggttattttaaatataacgtctctactt 1604 Query: 121 aaaacgactgtgaatgaagaaggaaaagctttggaaaagcctcagttactattgcatact 180 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1603 aaaacgactgtgaatgaagaaggaaaagccttggaaaagcctcagttactattgcatact 1544 Query: 181 aaattcgacatattagaataaattct 206 |||||||||||||||||||||||||| Sbjct: 1543 aaattcgacatattagaataaattct 1518 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 27,120 Number of Sequences: 18737 Number of extensions: 27120 Number of successful extensions: 2562 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2558 Number of HSP's gapped (non-prelim): 3 length of query: 717 length of database: 41,270,998 effective HSP length: 17 effective length of query: 700 effective length of database: 40,952,469 effective search space: 28666728300 effective search space used: 28666728300 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA141245|DMAA41245 CK01680.3prime CK Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone CK01680 3prime, mRNA sequence. (571 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value scpr-C-RA feature: mRNA loc=3R:join(7051260..7051389,7051443..70... 932 0.0 scpr-B-RA feature: mRNA loc=3R:complement(7065774..7066552,70666... 692 0.0 scpr-A-RA feature: mRNA loc=3R:join(7066923..7067055,7067121..70... 682 0.0 >scpr-C-RA feature: mRNA loc=3R:join(7051260..7051389, 7051443..7052330);ID=FBan0005106;gene_id=FBgn0037879;gen e_sym=scpr-C;sym=CG5106;scaffold=AE003690;len=1018 Length = 1018 Score = 932 bits (470), Expect = 0.0 Identities = 545/572 (95%), Gaps = 2/572 (0%) Strand = Plus / Minus Query: 1 acagcaaacataaacaattaaaatttattctttcagcactcttaaactaaaatgttacat 60 |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 910 acagcaaacataaataattaaaatttattcttttagcactcttaaactaaaatgttacat 851 Query: 61 atnaatcaaattccattgtcccatcaatcgaagtccattccatgcctacatcgtctgtgt 120 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 850 attaatcaaattccattgtcccatcaatcgaagtccattccatgcctacatcgtctgtgt 791 Query: 121 gttctcgatgaccttctcgttgtcgtaaatctccttggcgtaccacaggttggggtagtc 180 ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct: 790 gttctcgatgaccttctcgttgtcgtagatctccttggcgtagcacaggttggggtagtc 731 Query: 181 gtaggcagctccataacggttcttgcacccggnggttgcnnnnnnnnnnggagtgtaaac 240 |||||||||||||||||||||||||||||||| |||||| |||||||| || Sbjct: 730 gtaggcagctccataacggttcttgcacccggtggttgccttctctcccggagtgtagac 671 Query: 241 aggctgacccacaatgttcgatgtggcgaagttgcaggtgagtacgaagtggttgtaaaa 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 670 aggctgacccacaatgttcgatgtggcgaagttgcaggtgagtacgaagtggttgtaaaa 611 Query: 301 gtcccgggagaagcgcaccgcggcacatcccacatgggtgttcttctcggccaccgcgat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 610 gtcccgggagaagcgcaccgcggcacatcccacatgggtgttcttctcggccaccgcgat 551 Query: 361 ggtgaacttggtcaccgctttgttgggaagctcctccgggaagctggcgaggatctcggg 420 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 550 ggtgaacttggtcaccgccttgttgggaagctcctccgggaagctggcgaggatctcggg 491 Query: 421 agatgcattcgagcgctcagcaaaccagttctcgatctgctcctttattatttccgcatc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 490 agatgcattcgagcgctcagcaaaccagttctcgatctgctcctttattatttccgcatc 431 Query: 481 ggtgtac-ccgtctcggctccgctgtactggancacggcgttgttctggccggctatgcc 539 ||||||| |||||||||||||||||||||||| ||||||||||||||||||||| | | Sbjct: 430 ggtgtactccgtctcggctccgctgtactggaacacggcgttgttctggccggcgtaggc 371 Query: 540 gantctctcgngtgctgccacatttatctggc 571 || ||||||| ||||||| ||||||||||||| Sbjct: 370 gaatctctcg-gtgctgcgacatttatctggc 340 >scpr-B-RA feature: mRNA loc=3R:complement(7065774..7066552, 7066606..7066731);ID=FBan0017210;gene_id=FBgn0037888;gen e_sym=scpr-B;sym=CG17210;scaffold=AE003690;len=905 Length = 905 Score = 692 bits (349), Expect = 0.0 Identities = 437/468 (93%), Gaps = 2/468 (0%) Strand = Plus / Minus Query: 105 cctacatcgtctgtgtgttctcgatgaccttctcgttgtcgtaaatctccttggcgtacc 164 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct: 802 cctacatcgtctgtgtgttctcgatgaccttctcgttgtcgtagatctccttggcgtagc 743 Query: 165 acaggttggggtagtcgtaggcagctccataacggttcttgcacccggnggttgcnnnnn 224 |||| |||||||||||||||||||||||||| ||||||||||| |||| |||||| Sbjct: 742 acagattggggtagtcgtaggcagctccatatcggttcttgcagccggtggttgccttct 683 Query: 225 nnnnnggagtgtaaacaggctgacccacaatgttcgatgtggcgaagttgcaggtgagta 284 |||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 682 ctcccggagtgtagacaggctgacccacaatgttcgatgtggcgaagttgcaggtgagta 623 Query: 285 cgaagtggttgtaaaagtcccgggagaagcgcaccgcggcacatcccacatgggtgttct 344 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 622 cgaagtggttgtaaaagtcccgggagaagcgcacggccgcacatcccacatgggtgttct 563 Query: 345 tctcggccaccgcgatggtgaacttggtcaccgctttgttgggaagctcctccgggaagc 404 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 562 tctcggccaccgcgatggtgaacttggtcaccgccttgttgggaagctcctccgggaagc 503 Query: 405 tggcgaggatctcgggagatgcattcgagcgctcagcaaaccagttctcgatctgctcct 464 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 502 tggcgaggatctcgggagatgcattcgagcgctcagcaaaccagttctcgatctgctcct 443 Query: 465 ttattatttccgcatcggtgtac-ccgtctcggctccgctgtactggancacggcgttgt 523 ||||||||||||||||||||||| | |||||||||||||||||||||| || |||||||| Sbjct: 442 ttattatttccgcatcggtgtactctgtctcggctccgctgtactggaacaaggcgttgt 383 Query: 524 tctggccggctatgccgantctctcgngtgctgccacatttatctggc 571 |||||||||| | ||| ||||||| ||||||| ||||||||||||| Sbjct: 382 tctggccggcgtaggcgaatctctcg-gtgctgcgacatttatctggc 336 >scpr-A-RA feature: mRNA loc=3R:join(7066923..7067055, 7067121..7067863);ID=FBan0005207;gene_id=FBgn0037889;gen e_sym=scpr-A;sym=CG5207;scaffold=AE003690;len=876 Length = 876 Score = 682 bits (344), Expect = 0.0 Identities = 405/428 (94%), Gaps = 1/428 (0%) Strand = Plus / Minus Query: 107 tacatcgtctgtgtgttctcgatgaccttctcgttgtcgtaaatctccttggcgtaccac 166 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct: 807 tacatcgtctgtgtgttctcgatgaccttctcgttgtcgtagatctccttggcgtagcac 748 Query: 167 aggttggggtagtcgtaggcagctccataacggttcttgcacccggnggttgcnnnnnnn 226 || |||||||| ||||||||||||||||| ||||||||||| |||| |||||| Sbjct: 747 agattggggtaatcgtaggcagctccatatcggttcttgcagccggtggttgccttctct 688 Query: 227 nnnggagtgtaaacaggctgacccacaatgttcgatgtggcgaagttgcaggtgagtacg 286 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 687 cccggagtgtagacaggctgacccacaatgttcgatgtggcgaagttgcaggtgagtacg 628 Query: 287 aagtggttgtaaaagtcccgggagaagcgcaccgcggcacatcccacatgggtgttcttc 346 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 627 aagtggttgtaaaagtcccgggagaagcgcaccgcggcacatcccacatgtgtgttcttc 568 Query: 347 tcggccaccgcgatggtgaacttggtcaccgctttgttgggaagctcctccgggaagctg 406 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 567 tcggccaccgcgatggtgaacttggtcaccgctttgttgggaagctcctccgggaagctg 508 Query: 407 gcgaggatctcgggagatgcattcgagcgctcagcaaaccagttctcgatctgctccttt 466 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 507 gcgaggatctcgggagatgcattcgagcgctcagcaaaccagttctcgatctcctccttt 448 Query: 467 attatttccgcatcggtgtac-ccgtctcggctccgctgtactggancacggcgttgttc 525 ||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||| Sbjct: 447 attatttccgcatcggtgtactccgtctcggctccgctgtactggaacaaggcgttgttc 388 Query: 526 tggccggc 533 |||||||| Sbjct: 387 tggccggc 380 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,441 Number of Sequences: 18737 Number of extensions: 12441 Number of successful extensions: 300 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 289 Number of HSP's gapped (non-prelim): 6 length of query: 571 length of database: 41,270,998 effective HSP length: 17 effective length of query: 554 effective length of database: 40,952,469 effective search space: 22687667826 effective search space used: 22687667826 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA141383|DMAA41383 CK01660.3prime CK Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone CK01660 3prime, mRNA sequence. (484 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value 312-RA feature: mRNA loc=3L:join(1331768..1332100,1332158..13324... 799 0.0 >312-RA feature: mRNA loc=3L:join(1331768..1332100,1332158..1332418, 1332482..1333482);ID=FBan0009166;gene_id=FBgn0029514;gen e_sym=312;sym=CG9166;scaffold=AE003471;len=1595 Length = 1595 Score = 799 bits (403), Expect = 0.0 Identities = 438/452 (96%), Gaps = 1/452 (0%) Strand = Plus / Minus Query: 33 attaatagtgaaatgtattattttacgtctttagtttcgatttgtctacnaaagaaaggg 92 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 795 attaatagtgaaatgtattattttacgtctttagtttcgatttgtctacgaaagaaaggg 736 Query: 93 gtgtttgagccatgaaaatatcgccatagggattggtgggtttttggctttcgcggtcna 152 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 735 gtgtttgagccatgaaaatatcgccatagggattggtgggtttttggctttcgcggtcga 676 Query: 153 attcgganccaatggcccacagcgactccanatcgtattcctcncgagcactcggtgaaa 212 ||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct: 675 attcggagccaatggcccacagcgactccagatcgtattcctcgcgagcactcggtgaaa 616 Query: 213 atatgtgcagggcaatgttgcccaantccatggccatccaatcccggctcttatcgccct 272 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 615 atatgtgcagggcaatgttgcccaagtccatggccatccaatcccggctcttatcgccct 556 Query: 273 cgatgcgcggcaatatgtcacccttgccccncttgatcttgaacattcggcgcacnaact 332 |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct: 555 cgatgcgcggcaatatgtcacccttgccccgcttgatcttgaacattcggcgcacgaact 496 Query: 333 ccgccgtgganagcatgtgtcggtaactgcgaccactgcaaaccaccaggtggtcaacgt 392 |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 495 ccgcggtggacagcatgtgtcggtaactgcgaccactgcaaaccaccaggtggtcaacgt 436 Query: 393 acttcaggttctccggcacgtancanacaaaatatgtcgtccacattctccttgcggagc 452 |||||||||||||||||||||| || || |||||||||||||||||||||||||||||| Sbjct: 435 acttcaggttctccggcacgtagcagac-gaatatgtcgtccacattctccttgcggagc 377 Query: 453 agctccaccaagtcctcaacgtcgaacactcc 484 |||||||||||||||||||||||||||||||| Sbjct: 376 agctccaccaagtcctcaacgtcgaacactcc 345 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8966 Number of Sequences: 18737 Number of extensions: 8966 Number of successful extensions: 219 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 216 Number of HSP's gapped (non-prelim): 2 length of query: 484 length of database: 41,270,998 effective HSP length: 17 effective length of query: 467 effective length of database: 40,952,469 effective search space: 19124803023 effective search space used: 19124803023 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA141392|DMAA41392 CK01670.contig CK Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone CK01670 contig, mRNA sequence. (704 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG3777-RC feature: mRNA loc=X:join(100483..100583,101130..101271... 989 0.0 CG3777-RB feature: mRNA loc=X:join(37141..37195,101130..101271,1... 989 0.0 CG3777-RA feature: mRNA loc=X:join(100483..100557,101130..101271... 989 0.0 >CG3777-RC feature: mRNA loc=X:join(100483..100583,101130..101271,103587..105145, 105518..105676,106085..106762, 106882..107642);ID=FBan0003777;gene_id=FBgn0024989;gene_s ym=CG3777;sym=CG3777;scaffold=AE003417;len=3400 Length = 3400 Score = 989 bits (499), Expect = 0.0 Identities = 504/506 (99%) Strand = Plus / Plus Query: 1 aagcaggtgattccgctgccgtcgttccagcggctcctgtatccgggttaaatcgtctta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2436 aagcaggtgattccgctgccgtcgttccagcggctcctgtatccgggttaaatcgtctta 2495 Query: 61 gaactcgaccacgtctcaacgccctaacgcataagactgatgcggttaagcctaaggcat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2496 gaactcgaccacgtctcaacgccctaacgcataagactgatgcggttaagcctaaggcat 2555 Query: 121 ccgcagcccccgcccccgcgccaaggaagattaatcctctgttggcaaagcgacgactcc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2556 ccgcagcccccgcccccgcgccaaggaagattaatcctctgttggcaaagcgacgactcc 2615 Query: 181 aactgggagccacttccaccacngagtcccccgctgaggaggagcatttagcgctggact 240 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 2616 aactgggagccacttccaccacagagtcccccgctgaggaggagcatttagcgctggact 2675 Query: 241 cctccgcggagcagtccgacaaagaggagtcgtttgccggaggaagcaacgagacgggcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2676 cctccgcggagcagtccgacaaagaggagtcgtttgccggaggaagcaacgagacgggcg 2735 Query: 301 gagaaggccccggaaagccggagcatgaaactacggaagcgacggaggcaacaactaagc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2736 gagaaggccccggaaagccggagcatgaaactacggaagcgacggaggcaacaactaagc 2795 Query: 361 aggagccccgcggtcttggacttttaggacagcgtcgtcgtctgccgctccgcaaacccg 420 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2796 agcagccccgcggtcttggacttttaggacagcgtcgtcgtctgccgctccgcaaacccg 2855 Query: 421 gaacgatcctgtaaaacaacaaattgccatctacccgtttgaatcctgtaataataactt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2856 gaacgatcctgtaaaacaacaaattgccatctacccgtttgaatcctgtaataataactt 2915 Query: 481 gcccagatttgctgcagcatactcct 506 |||||||||||||||||||||||||| Sbjct: 2916 gcccagatttgctgcagcatactcct 2941 >CG3777-RB feature: mRNA loc=X:join(37141..37195,101130..101271,103587..105145, 105518..105676,106085..106762, 106882..107642);ID=FBan0003777;gene_id=FBgn0024989;gene_s ym=CG3777;sym=CG3777;scaffold=AE003417;len=3354 Length = 3354 Score = 989 bits (499), Expect = 0.0 Identities = 504/506 (99%) Strand = Plus / Plus Query: 1 aagcaggtgattccgctgccgtcgttccagcggctcctgtatccgggttaaatcgtctta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2390 aagcaggtgattccgctgccgtcgttccagcggctcctgtatccgggttaaatcgtctta 2449 Query: 61 gaactcgaccacgtctcaacgccctaacgcataagactgatgcggttaagcctaaggcat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2450 gaactcgaccacgtctcaacgccctaacgcataagactgatgcggttaagcctaaggcat 2509 Query: 121 ccgcagcccccgcccccgcgccaaggaagattaatcctctgttggcaaagcgacgactcc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2510 ccgcagcccccgcccccgcgccaaggaagattaatcctctgttggcaaagcgacgactcc 2569 Query: 181 aactgggagccacttccaccacngagtcccccgctgaggaggagcatttagcgctggact 240 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 2570 aactgggagccacttccaccacagagtcccccgctgaggaggagcatttagcgctggact 2629 Query: 241 cctccgcggagcagtccgacaaagaggagtcgtttgccggaggaagcaacgagacgggcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2630 cctccgcggagcagtccgacaaagaggagtcgtttgccggaggaagcaacgagacgggcg 2689 Query: 301 gagaaggccccggaaagccggagcatgaaactacggaagcgacggaggcaacaactaagc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2690 gagaaggccccggaaagccggagcatgaaactacggaagcgacggaggcaacaactaagc 2749 Query: 361 aggagccccgcggtcttggacttttaggacagcgtcgtcgtctgccgctccgcaaacccg 420 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2750 agcagccccgcggtcttggacttttaggacagcgtcgtcgtctgccgctccgcaaacccg 2809 Query: 421 gaacgatcctgtaaaacaacaaattgccatctacccgtttgaatcctgtaataataactt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2810 gaacgatcctgtaaaacaacaaattgccatctacccgtttgaatcctgtaataataactt 2869 Query: 481 gcccagatttgctgcagcatactcct 506 |||||||||||||||||||||||||| Sbjct: 2870 gcccagatttgctgcagcatactcct 2895 >CG3777-RA feature: mRNA loc=X:join(100483..100557,101130..101271,103587..105145, 105518..105676,106085..106762, 106882..107642);ID=FBan0003777;gene_id=FBgn0024989;gene_s ym=CG3777;sym=CG3777;scaffold=AE003417;len=3374 Length = 3374 Score = 989 bits (499), Expect = 0.0 Identities = 504/506 (99%) Strand = Plus / Plus Query: 1 aagcaggtgattccgctgccgtcgttccagcggctcctgtatccgggttaaatcgtctta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2410 aagcaggtgattccgctgccgtcgttccagcggctcctgtatccgggttaaatcgtctta 2469 Query: 61 gaactcgaccacgtctcaacgccctaacgcataagactgatgcggttaagcctaaggcat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2470 gaactcgaccacgtctcaacgccctaacgcataagactgatgcggttaagcctaaggcat 2529 Query: 121 ccgcagcccccgcccccgcgccaaggaagattaatcctctgttggcaaagcgacgactcc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2530 ccgcagcccccgcccccgcgccaaggaagattaatcctctgttggcaaagcgacgactcc 2589 Query: 181 aactgggagccacttccaccacngagtcccccgctgaggaggagcatttagcgctggact 240 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 2590 aactgggagccacttccaccacagagtcccccgctgaggaggagcatttagcgctggact 2649 Query: 241 cctccgcggagcagtccgacaaagaggagtcgtttgccggaggaagcaacgagacgggcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2650 cctccgcggagcagtccgacaaagaggagtcgtttgccggaggaagcaacgagacgggcg 2709 Query: 301 gagaaggccccggaaagccggagcatgaaactacggaagcgacggaggcaacaactaagc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2710 gagaaggccccggaaagccggagcatgaaactacggaagcgacggaggcaacaactaagc 2769 Query: 361 aggagccccgcggtcttggacttttaggacagcgtcgtcgtctgccgctccgcaaacccg 420 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2770 agcagccccgcggtcttggacttttaggacagcgtcgtcgtctgccgctccgcaaacccg 2829 Query: 421 gaacgatcctgtaaaacaacaaattgccatctacccgtttgaatcctgtaataataactt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2830 gaacgatcctgtaaaacaacaaattgccatctacccgtttgaatcctgtaataataactt 2889 Query: 481 gcccagatttgctgcagcatactcct 506 |||||||||||||||||||||||||| Sbjct: 2890 gcccagatttgctgcagcatactcct 2915 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,502 Number of Sequences: 18737 Number of extensions: 14502 Number of successful extensions: 317 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 314 Number of HSP's gapped (non-prelim): 3 length of query: 704 length of database: 41,270,998 effective HSP length: 17 effective length of query: 687 effective length of database: 40,952,469 effective search space: 28134346203 effective search space used: 28134346203 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA141420|DMAA41420 CK01713.5prime CK Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone CK01713 5prime, mRNA sequence. (676 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 19,834 Number of Sequences: 18737 Number of extensions: 19834 Number of successful extensions: 664 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 664 Number of HSP's gapped (non-prelim): 0 length of query: 676 length of database: 41,270,998 effective HSP length: 17 effective length of query: 659 effective length of database: 40,952,469 effective search space: 26987677071 effective search space used: 26987677071 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA141476|DMAA41476 CK01830.5prime CK Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone CK01830 5prime, mRNA sequence. (628 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG14216-RA feature: mRNA loc=X:join(19395527..19395832,19395895.... 1160 0.0 >CG14216-RA feature: mRNA loc=X:join(19395527..19395832,19395895..19396153, 19396212..19397835);ID=FBan0014216;gene_id=FBgn0031054;ge ne_sym=CG14216;sym=CG14216;scaffold=AE003512;len=2189 Length = 2189 Score = 1160 bits (585), Expect = 0.0 Identities = 608/619 (98%) Strand = Plus / Plus Query: 10 cggtatcttgttgacggcctgtgtcacatttaccctgcgacctcaaacctgcctaggtct 69 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1531 cggtttcttgttgacggcctgtgtcacatttaccctgcgacctcaaacctgcctaggtct 1590 Query: 70 tctcttcgacggaaataccattgattacgtctcatcccactgctacctcggagttcacct 129 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1591 tctcttcgacggaaataccattgattacgtctcatcccactgctacctcggagttcacct 1650 Query: 130 tgatcggacgctgagttggaaagcccttatcacggctcctggaaactgaaaaagctggac 189 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1651 tgatcggacgctgagttggaaagcccttatcacggctcctggaaactgaaaaagctggac 1710 Query: 190 tgggttttccactcaagcaaactccatatggcaactaaggctctcttaataaaagccata 249 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1711 tgggttttccactcaagcaaactccatatggcaactaaggctctcttaataaaagccata 1770 Query: 250 tccaagtgtggggaacagagtattanagtaagacaatcgggagcggcacgacatgcatct 309 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 1771 tccaagtgtggggaacagagtattagagtaagacaatcgggagcggcacgacatgcatct 1830 Query: 310 gggctacatgtggtatgtgagcaatanagttattgaaggggacttaaaaggtgtcccatt 369 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1831 gggctacatgtggtatgtgagcaatagagttattgaaggggacttaaaaggtgtcccatt 1890 Query: 370 ggggtaccaaataaacttccatagcagccgatatgccgacagacttagcgcccacttaaa 429 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1891 ggggtaccaaataaacttccatagcagccgatatgccgacagacttagcgcccacttaaa 1950 Query: 430 cacnttagcgaatgatcttgtcgaccctatttccctccgatgtctgaaganaatacatcc 489 ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1951 cacgttagcgaatgatcttgtcgaccctatttccctccgatgtctgaagagaatacatcc 2010 Query: 490 ccatgaactccttacacgtnatatagcataatctctcctcggtacatttgtatacactat 549 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 2011 ccatgaactccttacacgtaatatagcataatctctcctcggtacatttgtatacactat 2070 Query: 550 aattaangaacagaatccntaatatcttttaagctacacattangttaacttcagaanga 609 |||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||| || Sbjct: 2071 aattaaggaacagaatccataatatcttttaagctacacattaggttaacttcagaagga 2130 Query: 610 actgatcnattcctactga 628 ||||||| ||||||||||| Sbjct: 2131 actgatcgattcctactga 2149 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7489 Number of Sequences: 18737 Number of extensions: 7489 Number of successful extensions: 129 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 128 Number of HSP's gapped (non-prelim): 1 length of query: 628 length of database: 41,270,998 effective HSP length: 17 effective length of query: 611 effective length of database: 40,952,469 effective search space: 25021958559 effective search space used: 25021958559 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA141477|DMAA41477 CK01830.3prime CK Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone CK01830 3prime, mRNA sequence. (450 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG14216-RA feature: mRNA loc=X:join(19395527..19395832,19395895.... 863 0.0 >CG14216-RA feature: mRNA loc=X:join(19395527..19395832,19395895..19396153, 19396212..19397835);ID=FBan0014216;gene_id=FBgn0031054;ge ne_sym=CG14216;sym=CG14216;scaffold=AE003512;len=2189 Length = 2189 Score = 863 bits (432), Expect = 0.0 Identities = 444/450 (98%), Gaps = 1/450 (0%) Strand = Plus / Minus Query: 1 ctttttagagtttaaatcatttattattattcattagtcagtaggaatcgatcagttcct 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2186 ctttttagagtttaaatcatttattattattcattagtcagtaggaatcgatcagttcct 2127 Query: 61 tctgaagttaacctaatgtgtagcttaaaagatattatggattctgttccttaattatag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2126 tctgaagttaacctaatgtgtagcttaaaagatattatggattctgttccttaattatag 2067 Query: 121 tgtatacaaatgtaccgaggagagattatgctatattacgtgtaaggagttcatggggat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2066 tgtatacaaatgtaccgaggagagattatgctatattacgtgtaaggagttcatggggat 2007 Query: 181 gtattctcttcagacatcggagggaaatagggtcgacaagatcattcgctaacgtgttta 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2006 gtattctcttcagacatcggagggaaatagggtcgacaagatcattcgctaacgtgttta 1947 Query: 241 agtgggcgctaagtctgtcggcatatcggctgctatggaagtttatttggtaccccaatg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1946 agtgggcgctaagtctgtcggcatatcggctgctatggaagtttatttggtaccccaatg 1887 Query: 301 ggacaccttttaagtcccctbymathaccyctattgctcacataccacatgtagcccaga 360 |||||||||||||||||||| || | | |||||||||||||||||||||||||||||| Sbjct: 1886 ggacaccttttaagtccccttcaataa-ctctattgctcacataccacatgtagcccaga 1828 Query: 361 tgcatgtcgtgccgctcccgattgtcttactctaatactctgttccccacacttggatat 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1827 tgcatgtcgtgccgctcccgattgtcttactctaatactctgttccccacacttggatat 1768 Query: 421 ggcttttattaagagagccttagttgccat 450 |||||||||||||||||||||||||||||| Sbjct: 1767 ggcttttattaagagagccttagttgccat 1738 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.38 0.712 1.31 Gapped Lambda K H 1.38 0.712 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6903 Number of Sequences: 18737 Number of extensions: 6903 Number of successful extensions: 513 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 511 Number of HSP's gapped (non-prelim): 1 length of query: 450 length of database: 41,270,998 effective HSP length: 17 effective length of query: 433 effective length of database: 40,952,469 effective search space: 17732419077 effective search space used: 17732419077 T: 0 A: 0 X1: 6 (12.0 bits) X2: 15 (29.9 bits) S1: 12 (24.5 bits) S2: 184 (367.9 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA141595|DMAA41595 CK02262.5prime Drosophila Embryonic Polysomal in pBS skT Drosophila melanogaster cDNA clone CK02262 5', mRNA sequence. (527 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9851 Number of Sequences: 18737 Number of extensions: 9851 Number of successful extensions: 157 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 157 Number of HSP's gapped (non-prelim): 0 length of query: 527 length of database: 41,270,998 effective HSP length: 17 effective length of query: 510 effective length of database: 40,952,469 effective search space: 20885759190 effective search space used: 20885759190 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA141596|DMAA41596 CK02262.3prime Drosophila Embryonic Polysomal in pBS skT Drosophila melanogaster cDNA clone CK02262 3', mRNA sequence. (530 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9162 Number of Sequences: 18737 Number of extensions: 9162 Number of successful extensions: 251 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 251 Number of HSP's gapped (non-prelim): 0 length of query: 530 length of database: 41,270,998 effective HSP length: 17 effective length of query: 513 effective length of database: 40,952,469 effective search space: 21008616597 effective search space used: 21008616597 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA141788|DMAA41788 CK02472.3prime CK Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone CK02472 3prime, mRNA sequence. (433 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG14709-RA feature: mRNA loc=3R:join(7394990..7395574,7396767..7... 664 0.0 >CG14709-RA feature: mRNA loc=3R:join(7394990..7395574,7396767..7396852, 7396942..7397062,7397126..7397301,7397355..7397545, 7398008..7399602,7399670..7401311, 7401375..7401993);ID=FBan0014709;gene_id=FBgn0025701;gene _sym=CG14709;sym=CG14709;scaffold=AE003692;len=5015 Length = 5015 Score = 664 bits (335), Expect = 0.0 Identities = 376/388 (96%), Gaps = 3/388 (0%) Strand = Plus / Minus Query: 1 tataatgtaaaacaaatttatggtctatatatttanaactttataaaactttcacttcta 60 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 4721 tataatgtaaaacaaatttatggtctatatatttagaactttataaaactttcacttcta 4662 Query: 61 catttttganactgtatatttaaccgttcgttgggttgtttcattacattatagtatatc 120 ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 4661 catttttgagactgtatatttaaccgttcgttgggttgattcattacattatagtatatc 4602 Query: 121 tataaggattgagttatacaagtatgtacggttcgaaggcataatactttaagtanaaaa 180 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 4601 tataaggattgagttatacaagtatgtacggttcgaaggcataatactttaagtagaaaa 4542 Query: 181 ctagcttaaatgcagctgactggattaggtacaactttgaanacgcttacagccaggaaa 240 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 4541 ctagcttaaatgcagctgactggattaggtacaactttgaagacgcttacagccaggaaa 4482 Query: 241 tganaccttgttggctcccagtttagtaaccaataaccanatgcttaatctactccgatt 300 ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 4481 tgagaccttgttggctcccagtttagtaaccaataaccagatgcttaatctactccgatt 4422 Query: 301 tcggtttcattgattccaaatgagccttttcggcaactttaaaaaggctgttcnaatgtt 360 |||||||||||||||||||||||||||||||||||||||||| ||||||| || |||| | Sbjct: 4421 tcggtttcattgattccaaatgagccttttcggcaactttaagaaggctg-tcgaatg-t 4364 Query: 361 gttttgttccagtttccattaccattcc 388 |||||| ||||||||||||||||||||| Sbjct: 4363 gttttg-tccagtttccattaccattcc 4337 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7050 Number of Sequences: 18737 Number of extensions: 7050 Number of successful extensions: 471 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 469 Number of HSP's gapped (non-prelim): 1 length of query: 433 length of database: 41,270,998 effective HSP length: 17 effective length of query: 416 effective length of database: 40,952,469 effective search space: 17036227104 effective search space used: 17036227104 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA141972|DMAA41972 CK00068.3prime CK Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone CK00068 3prime, mRNA sequence. (566 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG9485-RC feature: mRNA loc=2R:join(16357449..16357530,16357975.... 1051 0.0 CG9485-RB feature: mRNA loc=2R:join(16356972..16357267,16357975.... 1051 0.0 CG9485-RA feature: mRNA loc=2R:join(16356231..16356334,16357975.... 1051 0.0 >CG9485-RC feature: mRNA loc=2R:join(16357449..16357530,16357975..16358315, 16358379..16358736,16358787..16360190,16360248..16361103, 16361160..16361337,16361398..16361567, 16361632..16363120);ID=FBan0009485;gene_id=FBgn0034618;ge ne_sym=CG9485;sym=CG9485;scaffold=AE003453;len=4878 Length = 4878 Score = 1051 bits (530), Expect = 0.0 Identities = 556/564 (98%), Gaps = 1/564 (0%) Strand = Plus / Plus Query: 1 gctatcgtctccaagttggatctggtggcacttagtggtgcccttttcagctgcgatgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2813 gctatcgtctccaagttggatctggtggcacttagtggtgcccttttcagctgcgatgat 2872 Query: 61 gaggagagggatcttggcaaaggtggcaccgcctacgacattcccaactttggaaagatc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2873 gaggagagggatcttggcaaaggtggcaccgcctacgacattcccaactttggaaagatc 2932 Query: 121 gtttactgcggactgcaaggattcatttccctgttgacggagatttcgcctaaaaatgac 180 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2933 gtttactgcggattgcaaggattcatttccctgttgacggagatttcgcctaaaaatgac 2992 Query: 181 ttgggacatccgctttgtaacaatctgcgcgacggaaactggatgatagattacatttct 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 2993 ttgggacatccgctttgtaacaatctgcgcgacggaaactggatgatggattacatttct 3052 Query: 241 gatcgcctaactagttacgaanacctgaaaccactctccgcctggttcaaagctaccttt 300 ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct: 3053 gatcgcctaactagttatgaagacctgaaaccactctccgcctggttcaaagctaccttt 3112 Query: 301 gagccactgaanaatattccacgctacctcataccctgctactttgatgccattgtcagc 360 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3113 gagccactgaagaatattccacgctacctcataccctgctactttgatgccattgtcagc 3172 Query: 361 ggggtttacaatgtgctcatcaaccaggtcaacgaactaatgccagacttcattaagaat 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3173 ggggtttacaatgtgctcatcaaccaggtcaacgaactaatgccagacttcattaagaat 3232 Query: 421 ggccacagtttcccacaatccctggccctgtccacgttgcagttcctctccgtttgcaag 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3233 ggccacagtttcccacaatccctggccctgtccacgttgcagttcctctccgtttgcaag 3292 Query: 481 tccgccaatctgccgggattcagtcctgctctaagtccacccaagcctccaaagcaatgt 540 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3293 tcggccaatctgccgggattcagtcctgctctaagtccacccaagcctccaaagcaatg- 3351 Query: 541 tttgactctatctgctggtctgcc 564 | |||||||||||||||||||||| Sbjct: 3352 tgtgactctatctgctggtctgcc 3375 >CG9485-RB feature: mRNA loc=2R:join(16356972..16357267,16357975..16358315, 16358379..16358736,16358787..16360190,16360248..16361103, 16361160..16361337,16361398..16361567, 16361632..16363120);ID=FBan0009485;gene_id=FBgn0034618;ge ne_sym=CG9485;sym=CG9485;scaffold=AE003453;len=5092 Length = 5092 Score = 1051 bits (530), Expect = 0.0 Identities = 556/564 (98%), Gaps = 1/564 (0%) Strand = Plus / Plus Query: 1 gctatcgtctccaagttggatctggtggcacttagtggtgcccttttcagctgcgatgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3027 gctatcgtctccaagttggatctggtggcacttagtggtgcccttttcagctgcgatgat 3086 Query: 61 gaggagagggatcttggcaaaggtggcaccgcctacgacattcccaactttggaaagatc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3087 gaggagagggatcttggcaaaggtggcaccgcctacgacattcccaactttggaaagatc 3146 Query: 121 gtttactgcggactgcaaggattcatttccctgttgacggagatttcgcctaaaaatgac 180 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3147 gtttactgcggattgcaaggattcatttccctgttgacggagatttcgcctaaaaatgac 3206 Query: 181 ttgggacatccgctttgtaacaatctgcgcgacggaaactggatgatagattacatttct 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 3207 ttgggacatccgctttgtaacaatctgcgcgacggaaactggatgatggattacatttct 3266 Query: 241 gatcgcctaactagttacgaanacctgaaaccactctccgcctggttcaaagctaccttt 300 ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct: 3267 gatcgcctaactagttatgaagacctgaaaccactctccgcctggttcaaagctaccttt 3326 Query: 301 gagccactgaanaatattccacgctacctcataccctgctactttgatgccattgtcagc 360 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3327 gagccactgaagaatattccacgctacctcataccctgctactttgatgccattgtcagc 3386 Query: 361 ggggtttacaatgtgctcatcaaccaggtcaacgaactaatgccagacttcattaagaat 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3387 ggggtttacaatgtgctcatcaaccaggtcaacgaactaatgccagacttcattaagaat 3446 Query: 421 ggccacagtttcccacaatccctggccctgtccacgttgcagttcctctccgtttgcaag 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3447 ggccacagtttcccacaatccctggccctgtccacgttgcagttcctctccgtttgcaag 3506 Query: 481 tccgccaatctgccgggattcagtcctgctctaagtccacccaagcctccaaagcaatgt 540 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3507 tcggccaatctgccgggattcagtcctgctctaagtccacccaagcctccaaagcaatg- 3565 Query: 541 tttgactctatctgctggtctgcc 564 | |||||||||||||||||||||| Sbjct: 3566 tgtgactctatctgctggtctgcc 3589 >CG9485-RA feature: mRNA loc=2R:join(16356231..16356334,16357975..16358315, 16358379..16358736,16358787..16360190,16360248..16361103, 16361160..16361337,16361398..16361567, 16361632..16363120);ID=FBan0009485;gene_id=FBgn0034618;ge ne_sym=CG9485;sym=CG9485;scaffold=AE003453;len=4900 Length = 4900 Score = 1051 bits (530), Expect = 0.0 Identities = 556/564 (98%), Gaps = 1/564 (0%) Strand = Plus / Plus Query: 1 gctatcgtctccaagttggatctggtggcacttagtggtgcccttttcagctgcgatgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2835 gctatcgtctccaagttggatctggtggcacttagtggtgcccttttcagctgcgatgat 2894 Query: 61 gaggagagggatcttggcaaaggtggcaccgcctacgacattcccaactttggaaagatc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2895 gaggagagggatcttggcaaaggtggcaccgcctacgacattcccaactttggaaagatc 2954 Query: 121 gtttactgcggactgcaaggattcatttccctgttgacggagatttcgcctaaaaatgac 180 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2955 gtttactgcggattgcaaggattcatttccctgttgacggagatttcgcctaaaaatgac 3014 Query: 181 ttgggacatccgctttgtaacaatctgcgcgacggaaactggatgatagattacatttct 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 3015 ttgggacatccgctttgtaacaatctgcgcgacggaaactggatgatggattacatttct 3074 Query: 241 gatcgcctaactagttacgaanacctgaaaccactctccgcctggttcaaagctaccttt 300 ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct: 3075 gatcgcctaactagttatgaagacctgaaaccactctccgcctggttcaaagctaccttt 3134 Query: 301 gagccactgaanaatattccacgctacctcataccctgctactttgatgccattgtcagc 360 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3135 gagccactgaagaatattccacgctacctcataccctgctactttgatgccattgtcagc 3194 Query: 361 ggggtttacaatgtgctcatcaaccaggtcaacgaactaatgccagacttcattaagaat 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3195 ggggtttacaatgtgctcatcaaccaggtcaacgaactaatgccagacttcattaagaat 3254 Query: 421 ggccacagtttcccacaatccctggccctgtccacgttgcagttcctctccgtttgcaag 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3255 ggccacagtttcccacaatccctggccctgtccacgttgcagttcctctccgtttgcaag 3314 Query: 481 tccgccaatctgccgggattcagtcctgctctaagtccacccaagcctccaaagcaatgt 540 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3315 tcggccaatctgccgggattcagtcctgctctaagtccacccaagcctccaaagcaatg- 3373 Query: 541 tttgactctatctgctggtctgcc 564 | |||||||||||||||||||||| Sbjct: 3374 tgtgactctatctgctggtctgcc 3397 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,562 Number of Sequences: 18737 Number of extensions: 11562 Number of successful extensions: 228 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 222 Number of HSP's gapped (non-prelim): 3 length of query: 566 length of database: 41,270,998 effective HSP length: 17 effective length of query: 549 effective length of database: 40,952,469 effective search space: 22482905481 effective search space used: 22482905481 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA142062|DMAA42062 CK00198.5prime CK Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone CK00198 5prime, mRNA sequence. (726 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Tequila-RD feature: mRNA loc=3L:join(9033368..9033539,9033774..9... 809 0.0 Tequila-RB feature: mRNA loc=3L:join(9045910..9045977,9046034..9... 809 0.0 Tequila-RA feature: mRNA loc=3L:join(9033392..9033539,9033774..9... 809 0.0 >Tequila-RD feature: mRNA loc=3L:join(9033368..9033539,9033774..9034332, 9046559..9048658,9048729..9049120,9049178..9049333, 9049395..9050175,9050243..9050335,9050447..9050530, 9050592..9050835);ID=FBan0004821;gene_id=FBgn0023479;gene _sym=Tequila;sym=CG4821;scaffold=AE003553;len=4581 Length = 4581 Score = 809 bits (408), Expect = 0.0 Identities = 454/469 (96%), Gaps = 1/469 (0%) Strand = Plus / Plus Query: 1 gtgcagccgtctgtcaggctcccgttcaataccgtttagagggtggtcgcaattccaatg 60 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 3207 gtgcagccgtctgtcaggctcccgttcaataccgtttagagggtggtcggaattccaatg 3266 Query: 61 aaggacgcctggaggtgaaacaccatggcgtatggggcagtgtttgtgatgatgacttta 120 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3267 aaggacgcctggaggtaaaacaccatggcgtatggggcagtgtttgtgatgatgacttta 3326 Query: 121 atctcaagtcggcccaagttgcctgcaactcaatgggcttctttggaccagcgaaaatcg 180 |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 3327 atctcaagtctgcccaagttgcctgcaactcaatgggcttttttggaccagcgaaaatcg 3386 Query: 181 agaanaacatatttggcaacagcaatggacccatttggctcgatcaggtaatgtgctttg 240 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3387 aaaagaacatatttggcaacagcaatggacccatttggctcgatcaggtaatgtgctttg 3446 Query: 241 gaaacgagacaagcattgaccaatgtaaccactggaactggggcgagcacaactgcaatc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3447 gaaacgagacaagcattgaccaatgtaaccactggaactggggcgagcacaactgcaatc 3506 Query: 301 atactgaagatgttgcgctgcactgcagcgctgggccaccacctcgcagtcagaggtatt 360 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3507 acactgaagatgttgcgctgcactgcagcgctgggccaccacctcgcagtcagaggtatt 3566 Query: 361 cccagactcagattaaaggtggtagatctctgggccgaaaaaccacaccgaagacctatt 420 |||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||| Sbjct: 3567 cccagactcagattaaaggtggtagatccctgggacgggaaaccacaccgaagacctatt 3626 Query: 421 cacaaattgggctgtgggaacngtcnaaccaaggcagtacatactcctc 469 ||||||||||||||||||||| ||| | |||||||||||||||||||| Sbjct: 3627 cacaaattgggctgtgggaacggtcg-agcaaggcagtacatactcctc 3674 >Tequila-RB feature: mRNA loc=3L:join(9045910..9045977,9046034..9046498, 9046559..9048658,9048729..9049120,9049178..9049333, 9049395..9050175,9050243..9050335,9050447..9050530, 9050592..9050831);ID=FBan0004821;gene_id=FBgn0023479;gene _sym=Tequila;sym=CG4821;scaffold=AE003553;len=4379 Length = 4379 Score = 809 bits (408), Expect = 0.0 Identities = 454/469 (96%), Gaps = 1/469 (0%) Strand = Plus / Plus Query: 1 gtgcagccgtctgtcaggctcccgttcaataccgtttagagggtggtcgcaattccaatg 60 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 3009 gtgcagccgtctgtcaggctcccgttcaataccgtttagagggtggtcggaattccaatg 3068 Query: 61 aaggacgcctggaggtgaaacaccatggcgtatggggcagtgtttgtgatgatgacttta 120 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3069 aaggacgcctggaggtaaaacaccatggcgtatggggcagtgtttgtgatgatgacttta 3128 Query: 121 atctcaagtcggcccaagttgcctgcaactcaatgggcttctttggaccagcgaaaatcg 180 |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 3129 atctcaagtctgcccaagttgcctgcaactcaatgggcttttttggaccagcgaaaatcg 3188 Query: 181 agaanaacatatttggcaacagcaatggacccatttggctcgatcaggtaatgtgctttg 240 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3189 aaaagaacatatttggcaacagcaatggacccatttggctcgatcaggtaatgtgctttg 3248 Query: 241 gaaacgagacaagcattgaccaatgtaaccactggaactggggcgagcacaactgcaatc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3249 gaaacgagacaagcattgaccaatgtaaccactggaactggggcgagcacaactgcaatc 3308 Query: 301 atactgaagatgttgcgctgcactgcagcgctgggccaccacctcgcagtcagaggtatt 360 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3309 acactgaagatgttgcgctgcactgcagcgctgggccaccacctcgcagtcagaggtatt 3368 Query: 361 cccagactcagattaaaggtggtagatctctgggccgaaaaaccacaccgaagacctatt 420 |||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||| Sbjct: 3369 cccagactcagattaaaggtggtagatccctgggacgggaaaccacaccgaagacctatt 3428 Query: 421 cacaaattgggctgtgggaacngtcnaaccaaggcagtacatactcctc 469 ||||||||||||||||||||| ||| | |||||||||||||||||||| Sbjct: 3429 cacaaattgggctgtgggaacggtcg-agcaaggcagtacatactcctc 3476 >Tequila-RA feature: mRNA loc=3L:join(9033392..9033539,9033774..9034332, 9034382..9034576,9034730..9034975,9035029..9035505, 9035568..9035670,9043196..9043629,9043768..9044010, 9044075..9044539,9044598..9045977,9046034..9046498, 9046559..9048658,9048729..9049120,9049178..9049333, 9049395..9050175,9050243..9050335,9050447..9050530, 9050592..9050835);ID=FBan0004821;gene_id=FBgn0023479;gene _sym=Tequila;sym=CG4821;scaffold=AE003553;len=8565 Length = 8565 Score = 809 bits (408), Expect = 0.0 Identities = 454/469 (96%), Gaps = 1/469 (0%) Strand = Plus / Plus Query: 1 gtgcagccgtctgtcaggctcccgttcaataccgtttagagggtggtcgcaattccaatg 60 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 7191 gtgcagccgtctgtcaggctcccgttcaataccgtttagagggtggtcggaattccaatg 7250 Query: 61 aaggacgcctggaggtgaaacaccatggcgtatggggcagtgtttgtgatgatgacttta 120 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7251 aaggacgcctggaggtaaaacaccatggcgtatggggcagtgtttgtgatgatgacttta 7310 Query: 121 atctcaagtcggcccaagttgcctgcaactcaatgggcttctttggaccagcgaaaatcg 180 |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 7311 atctcaagtctgcccaagttgcctgcaactcaatgggcttttttggaccagcgaaaatcg 7370 Query: 181 agaanaacatatttggcaacagcaatggacccatttggctcgatcaggtaatgtgctttg 240 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7371 aaaagaacatatttggcaacagcaatggacccatttggctcgatcaggtaatgtgctttg 7430 Query: 241 gaaacgagacaagcattgaccaatgtaaccactggaactggggcgagcacaactgcaatc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7431 gaaacgagacaagcattgaccaatgtaaccactggaactggggcgagcacaactgcaatc 7490 Query: 301 atactgaagatgttgcgctgcactgcagcgctgggccaccacctcgcagtcagaggtatt 360 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7491 acactgaagatgttgcgctgcactgcagcgctgggccaccacctcgcagtcagaggtatt 7550 Query: 361 cccagactcagattaaaggtggtagatctctgggccgaaaaaccacaccgaagacctatt 420 |||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||| Sbjct: 7551 cccagactcagattaaaggtggtagatccctgggacgggaaaccacaccgaagacctatt 7610 Query: 421 cacaaattgggctgtgggaacngtcnaaccaaggcagtacatactcctc 469 ||||||||||||||||||||| ||| | |||||||||||||||||||| Sbjct: 7611 cacaaattgggctgtgggaacggtcg-agcaaggcagtacatactcctc 7658 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,231 Number of Sequences: 18737 Number of extensions: 11231 Number of successful extensions: 244 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 238 Number of HSP's gapped (non-prelim): 3 length of query: 726 length of database: 41,270,998 effective HSP length: 17 effective length of query: 709 effective length of database: 40,952,469 effective search space: 29035300521 effective search space used: 29035300521 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA142063|DMAA42063 CK00198.3prime CK Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone CK00198 3prime, mRNA sequence. (500 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Tequila-RD feature: mRNA loc=3L:join(9033368..9033539,9033774..9... 724 0.0 Tequila-RB feature: mRNA loc=3L:join(9045910..9045977,9046034..9... 724 0.0 Tequila-RA feature: mRNA loc=3L:join(9033392..9033539,9033774..9... 724 0.0 >Tequila-RD feature: mRNA loc=3L:join(9033368..9033539,9033774..9034332, 9046559..9048658,9048729..9049120,9049178..9049333, 9049395..9050175,9050243..9050335,9050447..9050530, 9050592..9050835);ID=FBan0004821;gene_id=FBgn0023479;gene _sym=Tequila;sym=CG4821;scaffold=AE003553;len=4581 Length = 4581 Score = 724 bits (365), Expect = 0.0 Identities = 447/473 (94%), Gaps = 5/473 (1%) Strand = Plus / Minus Query: 1 tctaaaaatgtctgctttattagcaagttcactacaaaattcttataaattagtagtcat 60 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4577 tctaaaaaagtctgctttattagcaagttcactacaaaattcttataaattagtagtcat 4518 Query: 61 gtaanaaggtggatattaaagtgtaaagtgagtatatgctcccttaaaagcgtagcaagc 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4517 gtaagaaggtggatattaaagtgtaaagtgagtatatgctcccttaaaagcgtagcaagc 4458 Query: 121 tctcattgattttctcgtaaatccaatcgatatagtgattcacacggacgtaaacacccg 180 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct: 4457 tctcattgattttctcgtagatccaatcgatatagtgattcacacggacgtagacacccg 4398 Query: 181 gtctgttcttgaagccgcagtgctgaccccacgaaataagcccgtacaaagtctcgccat 240 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 4397 gtctgttcttgaagccgcagtgctgaccccacgaaataagcccgtacagagtctcgccat 4338 Query: 241 catcatcggagcanacaagtggaccgcctgagtcaccttcacaggcatccacactctcgt 300 | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4337 cgtcatcggagcagacaagtggaccgcctgagtcaccttcacaggcatccacactctcgt 4278 Query: 301 ccatggagccggcgcaaaacatgccttccgacatggctgatccatacacattanattgct 360 |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct: 4277 ccatggagccggcgcagaacatgccttccgacatggctgatccatacacattagattgct 4218 Query: 361 tgcatacgtgatcggccnaaatgggaa-ctcggcggaa-ccnaaacttgcgccgggagtg 418 ||||||||||||||||| ||||||||| |||||||||| || ||||||||| | |||||| Sbjct: 4217 tgcatacgtgatcggccaaaatgggaagctcggcggaacccaaaacttgcg-caggagtg 4159 Query: 419 gacacncctgattaantaaaaacccccatccgnananggtgcacttgcngtcc 471 ||||| || |||| | || || ||||||||| | | ||||||||||| |||| Sbjct: 4158 gacactcccgatttaatagaa--ccccatccggagatggtgcacttgcggtcc 4108 >Tequila-RB feature: mRNA loc=3L:join(9045910..9045977,9046034..9046498, 9046559..9048658,9048729..9049120,9049178..9049333, 9049395..9050175,9050243..9050335,9050447..9050530, 9050592..9050831);ID=FBan0004821;gene_id=FBgn0023479;gene _sym=Tequila;sym=CG4821;scaffold=AE003553;len=4379 Length = 4379 Score = 724 bits (365), Expect = 0.0 Identities = 447/473 (94%), Gaps = 5/473 (1%) Strand = Plus / Minus Query: 1 tctaaaaatgtctgctttattagcaagttcactacaaaattcttataaattagtagtcat 60 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4379 tctaaaaaagtctgctttattagcaagttcactacaaaattcttataaattagtagtcat 4320 Query: 61 gtaanaaggtggatattaaagtgtaaagtgagtatatgctcccttaaaagcgtagcaagc 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4319 gtaagaaggtggatattaaagtgtaaagtgagtatatgctcccttaaaagcgtagcaagc 4260 Query: 121 tctcattgattttctcgtaaatccaatcgatatagtgattcacacggacgtaaacacccg 180 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct: 4259 tctcattgattttctcgtagatccaatcgatatagtgattcacacggacgtagacacccg 4200 Query: 181 gtctgttcttgaagccgcagtgctgaccccacgaaataagcccgtacaaagtctcgccat 240 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 4199 gtctgttcttgaagccgcagtgctgaccccacgaaataagcccgtacagagtctcgccat 4140 Query: 241 catcatcggagcanacaagtggaccgcctgagtcaccttcacaggcatccacactctcgt 300 | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4139 cgtcatcggagcagacaagtggaccgcctgagtcaccttcacaggcatccacactctcgt 4080 Query: 301 ccatggagccggcgcaaaacatgccttccgacatggctgatccatacacattanattgct 360 |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct: 4079 ccatggagccggcgcagaacatgccttccgacatggctgatccatacacattagattgct 4020 Query: 361 tgcatacgtgatcggccnaaatgggaa-ctcggcggaa-ccnaaacttgcgccgggagtg 418 ||||||||||||||||| ||||||||| |||||||||| || ||||||||| | |||||| Sbjct: 4019 tgcatacgtgatcggccaaaatgggaagctcggcggaacccaaaacttgcg-caggagtg 3961 Query: 419 gacacncctgattaantaaaaacccccatccgnananggtgcacttgcngtcc 471 ||||| || |||| | || || ||||||||| | | ||||||||||| |||| Sbjct: 3960 gacactcccgatttaatagaa--ccccatccggagatggtgcacttgcggtcc 3910 >Tequila-RA feature: mRNA loc=3L:join(9033392..9033539,9033774..9034332, 9034382..9034576,9034730..9034975,9035029..9035505, 9035568..9035670,9043196..9043629,9043768..9044010, 9044075..9044539,9044598..9045977,9046034..9046498, 9046559..9048658,9048729..9049120,9049178..9049333, 9049395..9050175,9050243..9050335,9050447..9050530, 9050592..9050835);ID=FBan0004821;gene_id=FBgn0023479;gene _sym=Tequila;sym=CG4821;scaffold=AE003553;len=8565 Length = 8565 Score = 724 bits (365), Expect = 0.0 Identities = 447/473 (94%), Gaps = 5/473 (1%) Strand = Plus / Minus Query: 1 tctaaaaatgtctgctttattagcaagttcactacaaaattcttataaattagtagtcat 60 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8561 tctaaaaaagtctgctttattagcaagttcactacaaaattcttataaattagtagtcat 8502 Query: 61 gtaanaaggtggatattaaagtgtaaagtgagtatatgctcccttaaaagcgtagcaagc 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8501 gtaagaaggtggatattaaagtgtaaagtgagtatatgctcccttaaaagcgtagcaagc 8442 Query: 121 tctcattgattttctcgtaaatccaatcgatatagtgattcacacggacgtaaacacccg 180 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct: 8441 tctcattgattttctcgtagatccaatcgatatagtgattcacacggacgtagacacccg 8382 Query: 181 gtctgttcttgaagccgcagtgctgaccccacgaaataagcccgtacaaagtctcgccat 240 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 8381 gtctgttcttgaagccgcagtgctgaccccacgaaataagcccgtacagagtctcgccat 8322 Query: 241 catcatcggagcanacaagtggaccgcctgagtcaccttcacaggcatccacactctcgt 300 | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8321 cgtcatcggagcagacaagtggaccgcctgagtcaccttcacaggcatccacactctcgt 8262 Query: 301 ccatggagccggcgcaaaacatgccttccgacatggctgatccatacacattanattgct 360 |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct: 8261 ccatggagccggcgcagaacatgccttccgacatggctgatccatacacattagattgct 8202 Query: 361 tgcatacgtgatcggccnaaatgggaa-ctcggcggaa-ccnaaacttgcgccgggagtg 418 ||||||||||||||||| ||||||||| |||||||||| || ||||||||| | |||||| Sbjct: 8201 tgcatacgtgatcggccaaaatgggaagctcggcggaacccaaaacttgcg-caggagtg 8143 Query: 419 gacacncctgattaantaaaaacccccatccgnananggtgcacttgcngtcc 471 ||||| || |||| | || || ||||||||| | | ||||||||||| |||| Sbjct: 8142 gacactcccgatttaatagaa--ccccatccggagatggtgcacttgcggtcc 8092 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7082 Number of Sequences: 18737 Number of extensions: 7082 Number of successful extensions: 153 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 147 Number of HSP's gapped (non-prelim): 3 length of query: 500 length of database: 41,270,998 effective HSP length: 17 effective length of query: 483 effective length of database: 40,952,469 effective search space: 19780042527 effective search space used: 19780042527 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA142301|DMAA42301 CK01823.contig CK Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone CK01823 contig, mRNA sequence. (1006 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value mnd-RC feature: mRNA loc=3L:join(14933994..14934033,14936461..14... 1065 0.0 mnd-RB feature: mRNA loc=3L:join(14933994..14934033,14936791..14... 1065 0.0 mnd-RA feature: mRNA loc=3L:join(14936291..14937128,14938728..14... 1065 0.0 >mnd-RC feature: mRNA loc=3L:join(14933994..14934033,14936461..14937128, 14938728..14938946,14939025..14939620, 14939709..14940549);ID=FBan0003297;gene_id=FBgn0002778;ge ne_sym=mnd;sym=CG3297;scaffold=AE003532;len=2364 Length = 2364 Score = 1065 bits (537), Expect = 0.0 Identities = 562/569 (98%), Gaps = 1/569 (0%) Strand = Plus / Minus Query: 439 cgcgttgctaacctatcttaggggtaaattgagacttatcctaactacaagatattcc-t 497 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 2039 cgcgttgctaacctatcttaggggtaaattgagacttatcctaactacaagatattccct 1980 Query: 498 tctatagttgcgttgatcgatacatccacaaaaagcactctcttcccaaagtcgtagagt 557 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 1979 tctatagttgcgttgatcgatacatccacaaaaggccctctcttcccaaagtcgtagagt 1920 Query: 558 cctgcagtcctagtcgaacttctcctggttgggcatacagatgaagaacttggagcacca 617 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1919 cctgcagtcctagtcgaacttctcctggttgggcatacagatgaagaatttggagcacca 1860 Query: 618 caggttgatcgcctgcgaagtgtccgccagccatttgaccggtttgtggatggtcagata 677 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1859 caggttgatcgcctgcgaagtgtccgccagccatttgaccggtttgtggatggtcaggta 1800 Query: 678 gtagaccggaattccagacagtataatgatcgtcccgattcctaccacatatggcgtctg 737 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1799 gtagaccggaattccagacagtataatgatcgtcccgattcctaccacatatggcgtctg 1740 Query: 738 cgtgcaggagaagatgaccaggaacaggcagacgatcagatagatgatgggcagcgccaa 797 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1739 cgtgcaagagaagatgaccaggaacaggcagacgatcagatagatgatgggcagcgccaa 1680 Query: 798 gttgaccttgatgggtcgctccgtcttgggttgcttgtagcgcatccacagcagtccgga 857 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1679 gttgaccttgatgggtcgctccgtcttgggttgcttgtagcgcatccacagcagtccgga 1620 Query: 858 taccgagatcagcgtgaacaacgcctccacgtagctgacgtagttgattagtacgtagac 917 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1619 taccgagatcagcgtgaacaacgcctccacgtagctgacgtagttgattagtacgtagac 1560 Query: 918 gtcctcgatgaacagcagcagcaaggtgagcacgcccaggaatatcagcgagagcacagg 977 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 1559 gtcctcgatgaacagcagcagcaaggtgagcacgcccaggaatatcagcgagggcacagg 1500 Query: 978 tgtcaggcaattaacgttaatcagcgaaa 1006 ||||||||||||||||||||||||||||| Sbjct: 1499 tgtcaggcaattaacgttaatcagcgaaa 1471 >mnd-RB feature: mRNA loc=3L:join(14933994..14934033,14936791..14937128, 14938728..14938946,14939025..14939620, 14939709..14940549);ID=FBan0003297;gene_id=FBgn0002778;ge ne_sym=mnd;sym=CG3297;scaffold=AE003532;len=2034 Length = 2034 Score = 1065 bits (537), Expect = 0.0 Identities = 562/569 (98%), Gaps = 1/569 (0%) Strand = Plus / Minus Query: 439 cgcgttgctaacctatcttaggggtaaattgagacttatcctaactacaagatattcc-t 497 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 1709 cgcgttgctaacctatcttaggggtaaattgagacttatcctaactacaagatattccct 1650 Query: 498 tctatagttgcgttgatcgatacatccacaaaaagcactctcttcccaaagtcgtagagt 557 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 1649 tctatagttgcgttgatcgatacatccacaaaaggccctctcttcccaaagtcgtagagt 1590 Query: 558 cctgcagtcctagtcgaacttctcctggttgggcatacagatgaagaacttggagcacca 617 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1589 cctgcagtcctagtcgaacttctcctggttgggcatacagatgaagaatttggagcacca 1530 Query: 618 caggttgatcgcctgcgaagtgtccgccagccatttgaccggtttgtggatggtcagata 677 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1529 caggttgatcgcctgcgaagtgtccgccagccatttgaccggtttgtggatggtcaggta 1470 Query: 678 gtagaccggaattccagacagtataatgatcgtcccgattcctaccacatatggcgtctg 737 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1469 gtagaccggaattccagacagtataatgatcgtcccgattcctaccacatatggcgtctg 1410 Query: 738 cgtgcaggagaagatgaccaggaacaggcagacgatcagatagatgatgggcagcgccaa 797 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1409 cgtgcaagagaagatgaccaggaacaggcagacgatcagatagatgatgggcagcgccaa 1350 Query: 798 gttgaccttgatgggtcgctccgtcttgggttgcttgtagcgcatccacagcagtccgga 857 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1349 gttgaccttgatgggtcgctccgtcttgggttgcttgtagcgcatccacagcagtccgga 1290 Query: 858 taccgagatcagcgtgaacaacgcctccacgtagctgacgtagttgattagtacgtagac 917 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1289 taccgagatcagcgtgaacaacgcctccacgtagctgacgtagttgattagtacgtagac 1230 Query: 918 gtcctcgatgaacagcagcagcaaggtgagcacgcccaggaatatcagcgagagcacagg 977 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 1229 gtcctcgatgaacagcagcagcaaggtgagcacgcccaggaatatcagcgagggcacagg 1170 Query: 978 tgtcaggcaattaacgttaatcagcgaaa 1006 ||||||||||||||||||||||||||||| Sbjct: 1169 tgtcaggcaattaacgttaatcagcgaaa 1141 >mnd-RA feature: mRNA loc=3L:join(14936291..14937128,14938728..14938946, 14939025..14939620, 14939709..14940549);ID=FBan0003297;gene_id=FBgn0002778;ge ne_sym=mnd;sym=CG3297;scaffold=AE003532;len=2494 Length = 2494 Score = 1065 bits (537), Expect = 0.0 Identities = 562/569 (98%), Gaps = 1/569 (0%) Strand = Plus / Minus Query: 439 cgcgttgctaacctatcttaggggtaaattgagacttatcctaactacaagatattcc-t 497 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 2169 cgcgttgctaacctatcttaggggtaaattgagacttatcctaactacaagatattccct 2110 Query: 498 tctatagttgcgttgatcgatacatccacaaaaagcactctcttcccaaagtcgtagagt 557 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 2109 tctatagttgcgttgatcgatacatccacaaaaggccctctcttcccaaagtcgtagagt 2050 Query: 558 cctgcagtcctagtcgaacttctcctggttgggcatacagatgaagaacttggagcacca 617 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 2049 cctgcagtcctagtcgaacttctcctggttgggcatacagatgaagaatttggagcacca 1990 Query: 618 caggttgatcgcctgcgaagtgtccgccagccatttgaccggtttgtggatggtcagata 677 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1989 caggttgatcgcctgcgaagtgtccgccagccatttgaccggtttgtggatggtcaggta 1930 Query: 678 gtagaccggaattccagacagtataatgatcgtcccgattcctaccacatatggcgtctg 737 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1929 gtagaccggaattccagacagtataatgatcgtcccgattcctaccacatatggcgtctg 1870 Query: 738 cgtgcaggagaagatgaccaggaacaggcagacgatcagatagatgatgggcagcgccaa 797 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1869 cgtgcaagagaagatgaccaggaacaggcagacgatcagatagatgatgggcagcgccaa 1810 Query: 798 gttgaccttgatgggtcgctccgtcttgggttgcttgtagcgcatccacagcagtccgga 857 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1809 gttgaccttgatgggtcgctccgtcttgggttgcttgtagcgcatccacagcagtccgga 1750 Query: 858 taccgagatcagcgtgaacaacgcctccacgtagctgacgtagttgattagtacgtagac 917 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1749 taccgagatcagcgtgaacaacgcctccacgtagctgacgtagttgattagtacgtagac 1690 Query: 918 gtcctcgatgaacagcagcagcaaggtgagcacgcccaggaatatcagcgagagcacagg 977 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 1689 gtcctcgatgaacagcagcagcaaggtgagcacgcccaggaatatcagcgagggcacagg 1630 Query: 978 tgtcaggcaattaacgttaatcagcgaaa 1006 ||||||||||||||||||||||||||||| Sbjct: 1629 tgtcaggcaattaacgttaatcagcgaaa 1601 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 36,435 Number of Sequences: 18737 Number of extensions: 36435 Number of successful extensions: 1252 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1246 Number of HSP's gapped (non-prelim): 3 length of query: 1006 length of database: 41,270,998 effective HSP length: 18 effective length of query: 988 effective length of database: 40,933,732 effective search space: 40442527216 effective search space used: 40442527216 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA694861|AA694861 GM01687.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM01687 5, mRNA sequence. (398 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32230-RB feature: mRNA loc=3L:complement(23175851..23176000,23... 710 0.0 CG32230-RA feature: mRNA loc=3L:complement(23175857..23176000,23... 628 e-180 >CG32230-RB feature: mRNA loc=3L:complement(23175851..23176000,23177777..23177923, 23177981..23178027, 23178088..23178127);ID=FBan0032230;gene_id=FBgn0052230;g ene_sym=CG32230;sym=CG32230;scaffold=AE002656;len=384 Length = 384 Score = 710 bits (358), Expect = 0.0 Identities = 374/382 (97%) Strand = Plus / Plus Query: 1 atatagttccattctgttttattggattgagtaaagttagacaaaatgcaaggtcttggt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atatagttccattctgttttattggattgagtaaagttagacaaaatgcaaggtcttggt 60 Query: 61 ctgcaaagtcttnnnnnnnntccagctttaattccactttatgtgtgcgttggagcggga 120 |||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ctgcaaagtcttaaaaaaaatccagctttaattccactttatgtgtgcgttggagcggga 120 Query: 121 gctattggagccgtctactatatggctcgacttgctactcgtaatcccgatgtcacttgg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 gctattggagccgtctactatatggctcgacttgctactcgtaatcccgatgtcacttgg 180 Query: 181 aatcgcacatcaaatcccgaaccatggcaagagtacaaagaaaagcaatacaagttttat 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 aatcgcacatcaaatcccgaaccatggcaagagtacaaagaaaagcaatacaagttttat 240 Query: 241 tcgcctgtgagggattattccaaaactaagagtgctgccccaaactttgatgaataaatt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 tcgcctgtgagggattattccaaaactaagagtgctgccccaaactttgatgaataaatt 300 Query: 301 acgtttccctagcagctgcaatttaaaaatgtaaaatgaaataacttcaaattataaata 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 acgtttccctagcagctgcaatttaaaaatgtaaaatgaaataacttcaaattataaata 360 Query: 361 aacatagtggatttgaaagcgt 382 |||||||||||||||||||||| Sbjct: 361 aacatagtggatttgaaagcgt 382 >CG32230-RA feature: mRNA loc=3L:complement(23175857..23176000,23177777..23177923, 23177981..23178132);ID=FBan0032230;gene_id=FBgn0052230;g ene_sym=CG32230;sym=CG32230;scaffold=AE002656;len=443 Length = 443 Score = 628 bits (317), Expect = e-180 Identities = 333/341 (97%) Strand = Plus / Plus Query: 38 tagacaaaatgcaaggtcttggtctgcaaagtcttnnnnnnnntccagctttaattccac 97 ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 103 tagacaaaatgcaaggtcttggtctgcaaagtcttaaaaaaaatccagctttaattccac 162 Query: 98 tttatgtgtgcgttggagcgggagctattggagccgtctactatatggctcgacttgcta 157 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 163 tttatgtgtgcgttggagcgggagctattggagccgtctactatatggctcgacttgcta 222 Query: 158 ctcgtaatcccgatgtcacttggaatcgcacatcaaatcccgaaccatggcaagagtaca 217 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 223 ctcgtaatcccgatgtcacttggaatcgcacatcaaatcccgaaccatggcaagagtaca 282 Query: 218 aagaaaagcaatacaagttttattcgcctgtgagggattattccaaaactaagagtgctg 277 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 283 aagaaaagcaatacaagttttattcgcctgtgagggattattccaaaactaagagtgctg 342 Query: 278 ccccaaactttgatgaataaattacgtttccctagcagctgcaatttaaaaatgtaaaat 337 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 343 ccccaaactttgatgaataaattacgtttccctagcagctgcaatttaaaaatgtaaaat 402 Query: 338 gaaataacttcaaattataaataaacatagtggatttgaaa 378 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 403 gaaataacttcaaattataaataaacatagtggatttgaaa 443 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8047 Number of Sequences: 18737 Number of extensions: 8047 Number of successful extensions: 668 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 663 Number of HSP's gapped (non-prelim): 5 length of query: 398 length of database: 41,270,998 effective HSP length: 17 effective length of query: 381 effective length of database: 40,952,469 effective search space: 15602890689 effective search space used: 15602890689 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI061996|AI061996 GH01027.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH01027 5 similar to CG10124: FBan0010124 'translation factor' located on: 3L 65C1-65C1;: 04/09/2001, mRNA sequence. (669 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG10124-RA feature: mRNA loc=3L:complement(6623757..6624120,6624... 1296 0.0 >CG10124-RA feature: mRNA loc=3L:complement(6623757..6624120,6624376..6624463, 6624544..6624643, 6624696..6625170);ID=FBan0010124;gene_id=FBgn0035709;gen e_sym=CG10124;sym=CG10124;scaffold=AE003561;len=1027 Length = 1027 Score = 1296 bits (654), Expect = 0.0 Identities = 668/670 (99%), Gaps = 2/670 (0%) Strand = Plus / Plus Query: 1 ccccttatacacattctcgtgttgtggctgtgaaatcgtttttcccaggtgatctgaaat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9 ccccttatacacattctcgtgttgtggctgtgaaatcgtttttcccaggtgatctgaaat 68 Query: 61 tttattagcatccattgttataaatttgaatcagtataaaagatcattcgccaaatacac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 69 tttattagcatccattgttataaatttgaatcagtataaaagatcattcgccaaatacac 128 Query: 121 tcaaccatgctgacgacccagcagaccgaattcaagatgatggacaacggcaccgagacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 129 tcaaccatgctgacgacccagcagaccgaattcaagatgatggacaacggcaccgagacg 188 Query: 181 ctggccgattctccttcgagttccagcgaggatctgaaaacgctttcggatatggatatt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 189 ctggccgattctccttcgagttccagcgaggatctgaaaacgctttcggatatggatatt 248 Query: 241 cgcaagcccgtaacggagattgttgatttgcgccttaagcatccgctagagaacacttgg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 249 cgcaagcccgtaacggagattgttgatttgcgccttaagcatccgctagagaacacttgg 308 Query: 301 acactgtggtacttggagaatgatcgcagcaagaactgggaggacatgcagaacgagatt 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 309 acactgtggtacttggagaatgatcgcagcaagaactgggaggacatgcagaacgagatt 368 Query: 361 actagctttgacatggtcgaggacttctggagtctctacaatcacattaagcagccatct 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 369 actagctttgacatggtcgaggacttctggagtctctacaatcacattaagcagccatct 428 Query: 421 gagattagagtgggcagcgattattctttgttcaagaagggcattcagccaatgtgggag 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 429 gagattagagtgggcagcgattattctttgttcaagaagggcattcagccaatgtgggag 488 Query: 481 gatgatgcgaacaagttcggcggccgttggggtcatcaatatggggcgtggctccaaagc 540 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 489 gatgatgcgaacaagttcggcggccgtt-gggtcatcaatatggggcgtggctccaaagc 547 Query: 541 gga-ctcgacaagctttggttagatgtgctactcatactgattggcgaggcctttgaaaa 599 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 548 ggagctcgacaagctttggttagatgtgctactcatactgattggcgaggcctttgaaaa 607 Query: 600 caccgaggaagtctgcggcgccgttatcaacttgcgcgggaagagcaacaaaatttcgat 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 608 caccgaggaagtctgcggcgccgttatcaacttgcgcgggaagagcaacaaaatttcgat 667 Query: 660 ttggaccgcc 669 |||||||||| Sbjct: 668 ttggaccgcc 677 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,818 Number of Sequences: 18737 Number of extensions: 14818 Number of successful extensions: 273 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 270 Number of HSP's gapped (non-prelim): 1 length of query: 669 length of database: 41,270,998 effective HSP length: 17 effective length of query: 652 effective length of database: 40,952,469 effective search space: 26701009788 effective search space used: 26701009788 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI062993|AI062993 GH02390.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH02390 5prime, mRNA sequence. (588 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG7920-RA feature: mRNA loc=3R:complement(25825555..25826205,258... 924 0.0 >CG7920-RA feature: mRNA loc=3R:complement(25825555..25826205,25826291..25826695, 25826757..25827149, 25829903..25830452);ID=FBan0007920;gene_id=FBgn0039737;ge ne_sym=CG7920;sym=CG7920;scaffold=AE003772;len=1999 Length = 1999 Score = 924 bits (466), Expect = 0.0 Identities = 466/466 (100%) Strand = Plus / Plus Query: 1 gagggtctcgatggactgggtgtgccaattattgccatgccatcgaccaccaacaagggc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1525 gagggtctcgatggactgggtgtgccaattattgccatgccatcgaccaccaacaagggc 1584 Query: 61 gagagcaagattgttcccacgctgaaggaaggcgctggcgtcgtcacttcgcgtgcccac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1585 gagagcaagattgttcccacgctgaaggaaggcgctggcgtcgtcacttcgcgtgcccac 1644 Query: 121 gtccactacgtcgtcacggagcatggaatcgcctcgctgttcggcaagaacgtgcgccag 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1645 gtccactacgtcgtcacggagcatggaatcgcctcgctgttcggcaagaacgtgcgccag 1704 Query: 181 aggatgtacgaactcatccagatcgccgatcccaagcaccgcgagaccctggagaaacaa 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1705 aggatgtacgaactcatccagatcgccgatcccaagcaccgcgagaccctggagaaacaa 1764 Query: 241 gccttcgagcgcatcaaggttatgccctcgccgaactaagcaagcactgaagaagcacta 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1765 gccttcgagcgcatcaaggttatgccctcgccgaactaagcaagcactgaagaagcacta 1824 Query: 301 gagatcactatttactagcagcgacccgcaatctttgaaggcattcccgatatcgctttg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1825 gagatcactatttactagcagcgacccgcaatctttgaaggcattcccgatatcgctttg 1884 Query: 361 atccacttcatagaactgcaatcatgatagccctttagcattaccaaatctgaaatttca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1885 atccacttcatagaactgcaatcatgatagccctttagcattaccaaatctgaaatttca 1944 Query: 421 attgatgagtaacgaattgatgggagaaataaaactgaaattgatt 466 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1945 attgatgagtaacgaattgatgggagaaataaaactgaaattgatt 1990 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,435 Number of Sequences: 18737 Number of extensions: 12435 Number of successful extensions: 261 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 260 Number of HSP's gapped (non-prelim): 1 length of query: 588 length of database: 41,270,998 effective HSP length: 17 effective length of query: 571 effective length of database: 40,952,469 effective search space: 23383859799 effective search space used: 23383859799 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI063119|AI063119 GH02609.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH02609 5prime, mRNA sequence. (570 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,226 Number of Sequences: 18737 Number of extensions: 11226 Number of successful extensions: 290 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 290 Number of HSP's gapped (non-prelim): 0 length of query: 570 length of database: 41,270,998 effective HSP length: 17 effective length of query: 553 effective length of database: 40,952,469 effective search space: 22646715357 effective search space used: 22646715357 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI063201|AI063201 GH02734.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH02734 5prime, mRNA sequence. (635 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32039-RA feature: mRNA loc=3L:join(9317733..9317897,9317956..9... 1136 0.0 >CG32039-RA feature: mRNA loc=3L:join(9317733..9317897,9317956..9318126, 9318186..9318714);ID=FBan0032039;gene_id=FBgn0052039;gen e_sym=CG32039;sym=CG32039;scaffold=AE003552;len=865 Length = 865 Score = 1136 bits (573), Expect = 0.0 Identities = 593/603 (98%) Strand = Plus / Plus Query: 1 cgaaaaccaagcaaaattccaaaaggaagccttatttttcgnnnnnnnnnnctataaaca 60 ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 6 cgaaaaccaagcaaaattccaaaaggaagccttatttttcgaaaaaaaaaactataaaca 65 Query: 61 aacccatattataacttattcaattcaatttaacaccatgggagcctgtctgtcctgctg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 66 aacccatattataacttattcaattcaatttaacaccatgggagcctgtctgtcctgctg 125 Query: 121 cggccaaagcgccgaggaaaccaacctgatgccatcgcctgaggagcgccgccagcagca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 126 cggccaaagcgccgaggaaaccaacctgatgccatcgcctgaggagcgccgccagcagca 185 Query: 181 gttggatgcggcggaaaagcgtcgccaggagaatgaacatcggggcattaagaatccgga 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 186 gttggatgcggcggaaaagcgtcgccaggagaatgaacatcggggcattaagaatccgga 245 Query: 241 cagcgtacgccgacagcaacaaagagcggaggaaatgcaacgcagggaggaggaggccgc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 246 cagcgtacgccgacagcaacaaagagcggaggaaatgcaacgcagggaggaggaggccgc 305 Query: 301 ccgtcagggtcaaggacaatccaatcttaggtggcaaactagctaaaaggaagtgaacat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 306 ccgtcagggtcaaggacaatccaatcttaggtggcaaactagctaaaaggaagtgaacat 365 Query: 361 ccatcctggtgtggcttataaagcacatccaaatttgttcccacatctttactgactttt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 366 ccatcctggtgtggcttataaagcacatccaaatttgttcccacatctttactgactttt 425 Query: 421 gtgcaaagtttttgtactactccgtatttgtatttgtattgtatacacctgtttttccga 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 426 gtgcaaagtttttgtactactccgtatttgtatttgtattgtatacacctgtttttccga 485 Query: 481 tctacatatttcatgaatcttcagaaaagaacatcttggattcaacaccatacaaacttt 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 486 tctacatatttcatgaatcttcagaaaagaacatcttggattcaacaccatacaaacttt 545 Query: 541 tagctggcgaccaaaatgtacaaccaaaaataaaatttaaaccaaattgttatcagtgat 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 546 tagctggcgaccaaaatgtacaaccaaaaataaaatttaaaccaaattgttatcagtgat 605 Query: 601 cgt 603 ||| Sbjct: 606 cgt 608 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 18,064 Number of Sequences: 18737 Number of extensions: 18064 Number of successful extensions: 516 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 514 Number of HSP's gapped (non-prelim): 2 length of query: 635 length of database: 41,270,998 effective HSP length: 17 effective length of query: 618 effective length of database: 40,952,469 effective search space: 25308625842 effective search space used: 25308625842 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI063330|AI063330 GH03076.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH03076 5prime, mRNA sequence. (608 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG5325-RA feature: mRNA loc=2L:join(12082642..12082781,12082865.... 1197 0.0 CG5325-RB feature: mRNA loc=2L:join(12082642..12082781,12082865.... 1104 0.0 >CG5325-RA feature: mRNA loc=2L:join(12082642..12082781,12082865..12082982, 12083049..12083352,12083419..12083582, 12083640..12084123);ID=FBan0005325;gene_id=FBgn0032407;g ene_sym=CG5325;sym=CG5325;scaffold=AE003635;len=1210 Length = 1210 Score = 1197 bits (604), Expect = 0.0 Identities = 607/608 (99%) Strand = Plus / Plus Query: 1 tcccactgattgattcagtcagtctttattttttaccatttcccacccaccacgaaatca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7 tcccactgattgattcagtcagtctttattttttaccatttcccacccaccacgaaatca 66 Query: 61 aggaaaagcatcccgaaattgcacaatgtccgaagaaaagaagaatggcgatgaattaaa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 67 aggaaaagcatcccgaaattgcacaatgtccgaagaaaagaagaatggcgatgaattaaa 126 Query: 121 cgacttgctggacagtgctctccaggatttcgataaaagtggtgccggtgaccaaaagga 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 127 cgacttgctggacagtgctctccaggatttcgataaaagtggtgccggtgaccaaaagga 186 Query: 181 gccgtccgcatcatcggatgtggcgaccaacgctggacctgagggctccgaggatccaga 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 187 gccgtccgcatcatcggatgtggcgaccaacgctggacctgagggctccgaggatccaga 246 Query: 241 tgcgtttttcattgagcaggccaaggtgctggccgatcgcatgaacacgctcttcggagg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 247 tgcgtttttcattgagcaggccaaggtgctggccgatcgcatgaacacgctcttcggagg 306 Query: 301 tccggacacgcccagtggcgatattccgccgctgccccaggatcccgaccagatcatggc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 307 tccggacacgcccagtggcgatattccgccgctgccccaggatcccgaccagatcatggc 366 Query: 361 cggtttcaaaaagatggccgaagcggcagcgctcaccttgagcggcgaaaattcggccac 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 367 cggtttcaaaaagatggccgaagcggcagcgctcaccttgagcggcgaaaattcggccac 426 Query: 421 cgacgaggatgtctccaagtattctgatagcatttcccaggctctcaagggtctgcaaga 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 427 cgacgaggatgtctccaagtattctgatagcatttcccaggctctcaagggtctgcaaga 486 Query: 481 gggctccgagaacctggctgctcccgcctcggagaacgacatagccagcatgtttggttc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 487 gggctccgagaacctggctgctcccgcctcggagaacgacatagccagcatgtttggttc 546 Query: 541 actgaatcttgaaggggctggcgagggtgatggaaacatgttcctaccattcatggaagg 600 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 547 actgaatcttgaaggggctggcgagggtgatggaaacatgttcctaccattcatggaggg 606 Query: 601 catgatgc 608 |||||||| Sbjct: 607 catgatgc 614 >CG5325-RB feature: mRNA loc=2L:join(12082642..12082781,12082865..12082982, 12083049..12083506);ID=FBan0005325;gene_id=FBgn0032407;g ene_sym=CG5325;sym=CG5325;scaffold=AE003635;len=716 Length = 716 Score = 1104 bits (557), Expect = 0.0 Identities = 557/557 (100%) Strand = Plus / Plus Query: 1 tcccactgattgattcagtcagtctttattttttaccatttcccacccaccacgaaatca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7 tcccactgattgattcagtcagtctttattttttaccatttcccacccaccacgaaatca 66 Query: 61 aggaaaagcatcccgaaattgcacaatgtccgaagaaaagaagaatggcgatgaattaaa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 67 aggaaaagcatcccgaaattgcacaatgtccgaagaaaagaagaatggcgatgaattaaa 126 Query: 121 cgacttgctggacagtgctctccaggatttcgataaaagtggtgccggtgaccaaaagga 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 127 cgacttgctggacagtgctctccaggatttcgataaaagtggtgccggtgaccaaaagga 186 Query: 181 gccgtccgcatcatcggatgtggcgaccaacgctggacctgagggctccgaggatccaga 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 187 gccgtccgcatcatcggatgtggcgaccaacgctggacctgagggctccgaggatccaga 246 Query: 241 tgcgtttttcattgagcaggccaaggtgctggccgatcgcatgaacacgctcttcggagg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 247 tgcgtttttcattgagcaggccaaggtgctggccgatcgcatgaacacgctcttcggagg 306 Query: 301 tccggacacgcccagtggcgatattccgccgctgccccaggatcccgaccagatcatggc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 307 tccggacacgcccagtggcgatattccgccgctgccccaggatcccgaccagatcatggc 366 Query: 361 cggtttcaaaaagatggccgaagcggcagcgctcaccttgagcggcgaaaattcggccac 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 367 cggtttcaaaaagatggccgaagcggcagcgctcaccttgagcggcgaaaattcggccac 426 Query: 421 cgacgaggatgtctccaagtattctgatagcatttcccaggctctcaagggtctgcaaga 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 427 cgacgaggatgtctccaagtattctgatagcatttcccaggctctcaagggtctgcaaga 486 Query: 481 gggctccgagaacctggctgctcccgcctcggagaacgacatagccagcatgtttggttc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 487 gggctccgagaacctggctgctcccgcctcggagaacgacatagccagcatgtttggttc 546 Query: 541 actgaatcttgaagggg 557 ||||||||||||||||| Sbjct: 547 actgaatcttgaagggg 563 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,096 Number of Sequences: 18737 Number of extensions: 16096 Number of successful extensions: 362 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 359 Number of HSP's gapped (non-prelim): 3 length of query: 608 length of database: 41,270,998 effective HSP length: 17 effective length of query: 591 effective length of database: 40,952,469 effective search space: 24202909179 effective search space used: 24202909179 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI063878|AI063878 GH03983.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH03983 5 similar to X15707: D.melanogaster DNA sequence (isolate CBS) for 18S rRNA (3'end), 5.8S rRNA and 28S rRNA (5'end). CDS:1055..1858; PID:g7693; FLYBASE:FBgn0003909, mRNA sequence. (637 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,065 Number of Sequences: 18737 Number of extensions: 10065 Number of successful extensions: 167 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 167 Number of HSP's gapped (non-prelim): 0 length of query: 637 length of database: 41,270,998 effective HSP length: 17 effective length of query: 620 effective length of database: 40,952,469 effective search space: 25390530780 effective search space used: 25390530780 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI064139|AI064139 GH04411.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH04411 5prime, mRNA sequence. (562 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32230-RB feature: mRNA loc=3L:complement(23175851..23176000,23... 638 0.0 CG32230-RA feature: mRNA loc=3L:complement(23175857..23176000,23... 628 e-179 >CG32230-RB feature: mRNA loc=3L:complement(23175851..23176000,23177777..23177923, 23177981..23178027, 23178088..23178127);ID=FBan0032230;gene_id=FBgn0052230;g ene_sym=CG32230;sym=CG32230;scaffold=AE002656;len=384 Length = 384 Score = 638 bits (322), Expect = 0.0 Identities = 338/346 (97%) Strand = Plus / Plus Query: 1 ttagacaaaatgcaaggtcttggtctgcaaagtcttnnnnnnnntccagctttaattcca 60 |||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 37 ttagacaaaatgcaaggtcttggtctgcaaagtcttaaaaaaaatccagctttaattcca 96 Query: 61 ctttatgtgtgcgttggagcgggagctattggagccgtctactatatggctcgacttgct 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 97 ctttatgtgtgcgttggagcgggagctattggagccgtctactatatggctcgacttgct 156 Query: 121 actcgtaatcccgatgtcacttggaatcgcacatcaaatcccgaaccatggcaagagtac 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 157 actcgtaatcccgatgtcacttggaatcgcacatcaaatcccgaaccatggcaagagtac 216 Query: 181 aaagaaaagcaatacaagttttattcgcctgtgagggattattccaaaactaagagtgct 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 217 aaagaaaagcaatacaagttttattcgcctgtgagggattattccaaaactaagagtgct 276 Query: 241 gccccaaactttgatgaataaattacgtttccctagcagctgcaatttaaaaatgtaaaa 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 277 gccccaaactttgatgaataaattacgtttccctagcagctgcaatttaaaaatgtaaaa 336 Query: 301 tgaaataacttcaaattataaataaacatagtggatttgaaagcgt 346 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 337 tgaaataacttcaaattataaataaacatagtggatttgaaagcgt 382 >CG32230-RA feature: mRNA loc=3L:complement(23175857..23176000,23177777..23177923, 23177981..23178132);ID=FBan0032230;gene_id=FBgn0052230;g ene_sym=CG32230;sym=CG32230;scaffold=AE002656;len=443 Length = 443 Score = 628 bits (317), Expect = e-179 Identities = 333/341 (97%) Strand = Plus / Plus Query: 2 tagacaaaatgcaaggtcttggtctgcaaagtcttnnnnnnnntccagctttaattccac 61 ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 103 tagacaaaatgcaaggtcttggtctgcaaagtcttaaaaaaaatccagctttaattccac 162 Query: 62 tttatgtgtgcgttggagcgggagctattggagccgtctactatatggctcgacttgcta 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 163 tttatgtgtgcgttggagcgggagctattggagccgtctactatatggctcgacttgcta 222 Query: 122 ctcgtaatcccgatgtcacttggaatcgcacatcaaatcccgaaccatggcaagagtaca 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 223 ctcgtaatcccgatgtcacttggaatcgcacatcaaatcccgaaccatggcaagagtaca 282 Query: 182 aagaaaagcaatacaagttttattcgcctgtgagggattattccaaaactaagagtgctg 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 283 aagaaaagcaatacaagttttattcgcctgtgagggattattccaaaactaagagtgctg 342 Query: 242 ccccaaactttgatgaataaattacgtttccctagcagctgcaatttaaaaatgtaaaat 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 343 ccccaaactttgatgaataaattacgtttccctagcagctgcaatttaaaaatgtaaaat 402 Query: 302 gaaataacttcaaattataaataaacatagtggatttgaaa 342 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 403 gaaataacttcaaattataaataaacatagtggatttgaaa 443 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,306 Number of Sequences: 18737 Number of extensions: 13306 Number of successful extensions: 378 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 374 Number of HSP's gapped (non-prelim): 4 length of query: 562 length of database: 41,270,998 effective HSP length: 17 effective length of query: 545 effective length of database: 40,952,469 effective search space: 22319095605 effective search space used: 22319095605 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI064296|AI064296 GH04665.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH04665 5prime, mRNA sequence. (516 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,432 Number of Sequences: 18737 Number of extensions: 12432 Number of successful extensions: 387 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 387 Number of HSP's gapped (non-prelim): 0 length of query: 516 length of database: 41,270,998 effective HSP length: 17 effective length of query: 499 effective length of database: 40,952,469 effective search space: 20435282031 effective search space used: 20435282031 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI064556|AI064556 GH05015.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH05015 5 similar to CG17646: FBan0017646 'transporter' located on: 2L 22B2-22B2;: 04/10/2001, mRNA sequence. (798 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG17646-RB feature: mRNA loc=2L:join(1734191..1734319,1743325..1... 1574 0.0 CG17646-RA feature: mRNA loc=2L:join(1739134..1739684,1743325..1... 1574 0.0 >CG17646-RB feature: mRNA loc=2L:join(1734191..1734319,1743325..1743741, 1743808..1743925,1745010..1745205,1745299..1745444, 1746588..1746826,1746886..1747026,1747384..1747694, 1749357..1749525,1750439..1750539,1751183..1751341, 1751407..1752278);ID=FBan0017646;gene_id=FBgn0031362;gene _sym=CG17646;sym=CG17646;scaffold=AE003585;len=2998 Length = 2998 Score = 1574 bits (794), Expect = 0.0 Identities = 797/798 (99%) Strand = Plus / Plus Query: 1 cgaactggtgcccttcctggccgaccagcagctcgtctgcccgagttaccacaacccagc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1178 cgaactggtgcccttcctggccgaccagcagctcgtctgcccgagttaccacaacccagc 1237 Query: 61 tgactatctactggaagtggccgtgggcgagcatcaacgtgacctgaatgagctaatcca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1238 tgactatctactggaagtggccgtgggcgagcatcaacgtgacctgaatgagctaatcca 1297 Query: 121 tgcggccaataaaaagtattacgaggatgtggatcgccataggtatatgagcagtgatga 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1298 tgcggccaataaaaagtattacgaggatgtggatcgccataggtatatgagcagtgatga 1357 Query: 181 tatggcacgcctcgtggaaagcattaaagaaaacatgggcggcaaggcagtggtaaaaac 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1358 tatggcacgcctcgtggaaagcattaaagaaaacatgggcggcaaggcagtggtaaaaac 1417 Query: 241 cagtgaagcgctggcagcatttgcggcggcgcaattctccagcttcgactatgtaaagcc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1418 cagtgaagcgctggcagcatttgcggcggcgcaattctccagcttcgactatgtaaagcc 1477 Query: 301 ctcgccgcaggagctggctctggaggagatcaaggcactgagcggcggccccgagagcgc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1478 ctcgccgcaggagctggctctggaggagatcaaggcactgagcggcggccccgagagcgc 1537 Query: 361 ggatcccgatctcctcgagaaaaatctgaggccacagccacagccgcttgccaaagccgg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1538 ggatcccgatctcctcgagaaaaatctgaggccacagccacagccgcttgccaaagccgg 1597 Query: 421 tgagcttgccaggccgccgaatgccattcgatcggcctcgttcctcatgcagtatgtgct 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1598 tgagcttgccaggccgccgaatgccattcgatcggcctcgttcctcatgcagtatgtgct 1657 Query: 481 cctgatgcagcgcatcttgatttgcgccaagcgaaactactttctgctgctggcccgcat 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1658 cctgatgcagcgcatcttgatttgcgccaagcgaaactactttctgctgctggcccgcat 1717 Query: 541 cttctcgcacattttcatcggagtcgtcttcgggtatctgtacatgaacgtgggcaacaa 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1718 cttctcgcacattttcatcggagtcgtcttcgggtatctgtacatgaacgtgggcaacaa 1777 Query: 601 tgcccagagtgtgctgggaaactacgtgtatctgtacggctccacgctgctcttggtcta 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1778 tgcccagagtgtgctgggaaactacgtgtatctgtacggctccacgctgctcttggtcta 1837 Query: 661 caccggtaaaatggctgtggtcttgacatttccgctggaaattgacatgttgacacggga 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1838 caccggtaaaatggctgtggtcttgacatttccgctggaaattgacatgttgacacggga 1897 Query: 721 gcacttcaaccgctggtacacactgggtccctacttcctctcgttgatctccttcgaaat 780 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 1898 gcacttcaaccgctggtacaaactgggtccctacttcctctcgttgatctccttcgaaat 1957 Query: 781 acccttccagagcctctg 798 |||||||||||||||||| Sbjct: 1958 acccttccagagcctctg 1975 >CG17646-RA feature: mRNA loc=2L:join(1739134..1739684,1743325..1743741, 1743808..1743925,1745010..1745205,1745299..1745444, 1746588..1746826,1746886..1747026,1747384..1747694, 1749357..1749525,1750439..1750539,1751183..1751341, 1751407..1752278);ID=FBan0017646;gene_id=FBgn0031362;gene _sym=CG17646;sym=CG17646;scaffold=AE003585;len=3420 Length = 3420 Score = 1574 bits (794), Expect = 0.0 Identities = 797/798 (99%) Strand = Plus / Plus Query: 1 cgaactggtgcccttcctggccgaccagcagctcgtctgcccgagttaccacaacccagc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1600 cgaactggtgcccttcctggccgaccagcagctcgtctgcccgagttaccacaacccagc 1659 Query: 61 tgactatctactggaagtggccgtgggcgagcatcaacgtgacctgaatgagctaatcca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1660 tgactatctactggaagtggccgtgggcgagcatcaacgtgacctgaatgagctaatcca 1719 Query: 121 tgcggccaataaaaagtattacgaggatgtggatcgccataggtatatgagcagtgatga 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1720 tgcggccaataaaaagtattacgaggatgtggatcgccataggtatatgagcagtgatga 1779 Query: 181 tatggcacgcctcgtggaaagcattaaagaaaacatgggcggcaaggcagtggtaaaaac 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1780 tatggcacgcctcgtggaaagcattaaagaaaacatgggcggcaaggcagtggtaaaaac 1839 Query: 241 cagtgaagcgctggcagcatttgcggcggcgcaattctccagcttcgactatgtaaagcc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1840 cagtgaagcgctggcagcatttgcggcggcgcaattctccagcttcgactatgtaaagcc 1899 Query: 301 ctcgccgcaggagctggctctggaggagatcaaggcactgagcggcggccccgagagcgc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1900 ctcgccgcaggagctggctctggaggagatcaaggcactgagcggcggccccgagagcgc 1959 Query: 361 ggatcccgatctcctcgagaaaaatctgaggccacagccacagccgcttgccaaagccgg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1960 ggatcccgatctcctcgagaaaaatctgaggccacagccacagccgcttgccaaagccgg 2019 Query: 421 tgagcttgccaggccgccgaatgccattcgatcggcctcgttcctcatgcagtatgtgct 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2020 tgagcttgccaggccgccgaatgccattcgatcggcctcgttcctcatgcagtatgtgct 2079 Query: 481 cctgatgcagcgcatcttgatttgcgccaagcgaaactactttctgctgctggcccgcat 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2080 cctgatgcagcgcatcttgatttgcgccaagcgaaactactttctgctgctggcccgcat 2139 Query: 541 cttctcgcacattttcatcggagtcgtcttcgggtatctgtacatgaacgtgggcaacaa 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2140 cttctcgcacattttcatcggagtcgtcttcgggtatctgtacatgaacgtgggcaacaa 2199 Query: 601 tgcccagagtgtgctgggaaactacgtgtatctgtacggctccacgctgctcttggtcta 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2200 tgcccagagtgtgctgggaaactacgtgtatctgtacggctccacgctgctcttggtcta 2259 Query: 661 caccggtaaaatggctgtggtcttgacatttccgctggaaattgacatgttgacacggga 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2260 caccggtaaaatggctgtggtcttgacatttccgctggaaattgacatgttgacacggga 2319 Query: 721 gcacttcaaccgctggtacacactgggtccctacttcctctcgttgatctccttcgaaat 780 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 2320 gcacttcaaccgctggtacaaactgggtccctacttcctctcgttgatctccttcgaaat 2379 Query: 781 acccttccagagcctctg 798 |||||||||||||||||| Sbjct: 2380 acccttccagagcctctg 2397 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 23,130 Number of Sequences: 18737 Number of extensions: 23130 Number of successful extensions: 577 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 575 Number of HSP's gapped (non-prelim): 2 length of query: 798 length of database: 41,270,998 effective HSP length: 17 effective length of query: 781 effective length of database: 40,952,469 effective search space: 31983878289 effective search space used: 31983878289 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI064611|AI064611 GH05075.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH05075 3prime similar to M77518: 14-3-3 FBgn0004907 PID:g156783 SWISS-PROT:P29310, mRNA sequence. (544 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value 14-3-3zeta-RE feature: mRNA loc=2R:join(5160321..5160371,5164889... 954 0.0 14-3-3zeta-RD feature: mRNA loc=2R:join(5161665..5161730,5164889... 954 0.0 14-3-3zeta-RH feature: mRNA loc=2R:join(5160321..5160371,5164889... 811 0.0 14-3-3zeta-RG feature: mRNA loc=2R:join(5161665..5161810,5164889... 811 0.0 14-3-3zeta-RB feature: mRNA loc=2R:join(5160312..5160483,5164889... 811 0.0 14-3-3zeta-RA feature: mRNA loc=2R:join(5161665..5161730,5164889... 811 0.0 14-3-3zeta-RF feature: mRNA loc=2R:join(5160321..5160371,5164889... 620 e-177 14-3-3zeta-RC feature: mRNA loc=2R:join(5161665..5161730,5164889... 620 e-177 >14-3-3zeta-RE feature: mRNA loc=2R:join(5160321..5160371,5164889..5165042, 5165350..5165463,5165574..5165700,5166335..5166458, 5166574..5166737, 5168100..5170320);ID=FBan0017870;gene_id=FBgn0004907;gen e_sym=14-3-3zeta;sym=CG17870;scaffold=AE003831;len=2955 Length = 2955 Score = 954 bits (481), Expect = 0.0 Identities = 481/481 (100%) Strand = Plus / Minus Query: 64 tattactgaataatatttgcatagtcaaaaaggaaacatttgcttagttgtttggttagt 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 945 tattactgaataatatttgcatagtcaaaaaggaaacatttgcttagttgtttggttagt 886 Query: 124 tgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcggacgtccagagagtca 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 885 tgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcggacgtccagagagtca 826 Query: 184 ggttgtccctcaacagctgcatgatgagtgtcgagtccttgtaggagtcctcgttcagtg 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 825 ggttgtccctcaacagctgcatgatgagtgtcgagtccttgtaggagtcctcgttcagtg 766 Query: 244 tgtccagctcggctatcgcatcatcgaacgcctgtttagccaattggcaagctttgtctg 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 765 tgtccagctcggctatcgcatcatcgaacgcctgtttagccaattggcaagctttgtctg 706 Query: 304 gtgagttcaaaatctcatagtagaagactgagaagttaagggccagacccaaacggatgg 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 705 gtgagttcaaaatctcatagtagaagactgagaagttaagggccagacccaaacggatgg 646 Query: 364 gatgtgttggctgcattttacccttgctaatgtcaaatgcatcctggtaagcggtttgcg 423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 645 gatgtgttggctgcattttacccttgctaatgtcaaatgcatcctggtaagcggtttgcg 586 Query: 424 agtcatcgacaacggtgttgcgtgcatctcctgtggcaacctcggctaaatacctgtagt 483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 585 agtcatcgacaacggtgttgcgtgcatctcctgtggcaacctcggctaaatacctgtagt 526 Query: 484 aatcacccttcatcttcaggtaaaacaccttgctctcgggattgctggcttttggaataa 543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 525 aatcacccttcatcttcaggtaaaacaccttgctctcgggattgctggcttttggaataa 466 Query: 544 g 544 | Sbjct: 465 g 465 >14-3-3zeta-RD feature: mRNA loc=2R:join(5161665..5161730,5164889..5165042, 5165350..5165463,5165574..5165700,5166335..5166458, 5166574..5166737, 5168100..5170320);ID=FBan0017870;gene_id=FBgn0004907;gen e_sym=14-3-3zeta;sym=CG17870;scaffold=AE003831;len=2970 Length = 2970 Score = 954 bits (481), Expect = 0.0 Identities = 481/481 (100%) Strand = Plus / Minus Query: 64 tattactgaataatatttgcatagtcaaaaaggaaacatttgcttagttgtttggttagt 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 960 tattactgaataatatttgcatagtcaaaaaggaaacatttgcttagttgtttggttagt 901 Query: 124 tgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcggacgtccagagagtca 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 900 tgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcggacgtccagagagtca 841 Query: 184 ggttgtccctcaacagctgcatgatgagtgtcgagtccttgtaggagtcctcgttcagtg 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 840 ggttgtccctcaacagctgcatgatgagtgtcgagtccttgtaggagtcctcgttcagtg 781 Query: 244 tgtccagctcggctatcgcatcatcgaacgcctgtttagccaattggcaagctttgtctg 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 780 tgtccagctcggctatcgcatcatcgaacgcctgtttagccaattggcaagctttgtctg 721 Query: 304 gtgagttcaaaatctcatagtagaagactgagaagttaagggccagacccaaacggatgg 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 720 gtgagttcaaaatctcatagtagaagactgagaagttaagggccagacccaaacggatgg 661 Query: 364 gatgtgttggctgcattttacccttgctaatgtcaaatgcatcctggtaagcggtttgcg 423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 660 gatgtgttggctgcattttacccttgctaatgtcaaatgcatcctggtaagcggtttgcg 601 Query: 424 agtcatcgacaacggtgttgcgtgcatctcctgtggcaacctcggctaaatacctgtagt 483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 600 agtcatcgacaacggtgttgcgtgcatctcctgtggcaacctcggctaaatacctgtagt 541 Query: 484 aatcacccttcatcttcaggtaaaacaccttgctctcgggattgctggcttttggaataa 543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 540 aatcacccttcatcttcaggtaaaacaccttgctctcgggattgctggcttttggaataa 481 Query: 544 g 544 | Sbjct: 480 g 480 >14-3-3zeta-RH feature: mRNA loc=2R:join(5160321..5160371,5164889..5165042, 5165350..5165463,5165574..5165700,5166335..5166458, 5166922..5167085, 5168100..5170320);ID=FBan0017870;gene_id=FBgn0004907;gen e_sym=14-3-3zeta;sym=CG17870;scaffold=AE003831;len=2955 Length = 2955 Score = 811 bits (409), Expect = 0.0 Identities = 463/481 (96%) Strand = Plus / Minus Query: 64 tattactgaataatatttgcatagtcaaaaaggaaacatttgcttagttgtttggttagt 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 945 tattactgaataatatttgcatagtcaaaaaggaaacatttgcttagttgtttggttagt 886 Query: 124 tgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcggacgtccagagagtca 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 885 tgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcggacgtccagagagtca 826 Query: 184 ggttgtccctcaacagctgcatgatgagtgtcgagtccttgtaggagtcctcgttcagtg 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 825 ggttgtccctcaacagctgcatgatgagtgtcgagtccttgtaggagtcctcgttcagtg 766 Query: 244 tgtccagctcggctatcgcatcatcgaacgcctgtttagccaattggcaagctttgtctg 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 765 tgtccagctcggctatcgcatcatcgaacgcctgtttagccaattggcaagctttgtctg 706 Query: 304 gtgagttcaaaatctcatagtagaagactgagaagttaagggccagacccaaacggatgg 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 705 gtgagttcaaaatctcatagtagaagactgagaagttaagggccagacccaaacggatgg 646 Query: 364 gatgtgttggctgcattttacccttgctaatgtcaaatgcatcctggtaagcggtttgcg 423 ||||||||||||||||||| || ||| || || || ||||| || || ||| || Sbjct: 645 gatgtgttggctgcattttggtttttgcaatatcgaacgcctcctgataggcatttttcg 586 Query: 424 agtcatcgacaacggtgttgcgtgcatctcctgtggcaacctcggctaaatacctgtagt 483 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 585 agtcatcaacgacggtgttgcgtgcatctcctgtggcaacctcggctaaatacctgtagt 526 Query: 484 aatcacccttcatcttcaggtaaaacaccttgctctcgggattgctggcttttggaataa 543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 525 aatcacccttcatcttcaggtaaaacaccttgctctcgggattgctggcttttggaataa 466 Query: 544 g 544 | Sbjct: 465 g 465 >14-3-3zeta-RG feature: mRNA loc=2R:join(5161665..5161810,5164889..5165042, 5165350..5165463,5165574..5165700,5166335..5166458, 5166922..5167085, 5168100..5170320);ID=FBan0017870;gene_id=FBgn0004907;gene _sym=14-3-3zeta;sym=CG17870;scaffold=AE003831;len=3050 Length = 3050 Score = 811 bits (409), Expect = 0.0 Identities = 463/481 (96%) Strand = Plus / Minus Query: 64 tattactgaataatatttgcatagtcaaaaaggaaacatttgcttagttgtttggttagt 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1040 tattactgaataatatttgcatagtcaaaaaggaaacatttgcttagttgtttggttagt 981 Query: 124 tgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcggacgtccagagagtca 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 980 tgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcggacgtccagagagtca 921 Query: 184 ggttgtccctcaacagctgcatgatgagtgtcgagtccttgtaggagtcctcgttcagtg 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 920 ggttgtccctcaacagctgcatgatgagtgtcgagtccttgtaggagtcctcgttcagtg 861 Query: 244 tgtccagctcggctatcgcatcatcgaacgcctgtttagccaattggcaagctttgtctg 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 860 tgtccagctcggctatcgcatcatcgaacgcctgtttagccaattggcaagctttgtctg 801 Query: 304 gtgagttcaaaatctcatagtagaagactgagaagttaagggccagacccaaacggatgg 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 800 gtgagttcaaaatctcatagtagaagactgagaagttaagggccagacccaaacggatgg 741 Query: 364 gatgtgttggctgcattttacccttgctaatgtcaaatgcatcctggtaagcggtttgcg 423 ||||||||||||||||||| || ||| || || || ||||| || || ||| || Sbjct: 740 gatgtgttggctgcattttggtttttgcaatatcgaacgcctcctgataggcatttttcg 681 Query: 424 agtcatcgacaacggtgttgcgtgcatctcctgtggcaacctcggctaaatacctgtagt 483 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 680 agtcatcaacgacggtgttgcgtgcatctcctgtggcaacctcggctaaatacctgtagt 621 Query: 484 aatcacccttcatcttcaggtaaaacaccttgctctcgggattgctggcttttggaataa 543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 620 aatcacccttcatcttcaggtaaaacaccttgctctcgggattgctggcttttggaataa 561 Query: 544 g 544 | Sbjct: 560 g 560 >14-3-3zeta-RB feature: mRNA loc=2R:join(5160312..5160483,5164889..5165042, 5165350..5165463,5165574..5165700,5166335..5166458, 5166922..5167085, 5168100..5170320);ID=FBan0017870;gene_id=FBgn0004907;gene _sym=14-3-3zeta;sym=CG17870;scaffold=AE003831;len=3076 Length = 3076 Score = 811 bits (409), Expect = 0.0 Identities = 463/481 (96%) Strand = Plus / Minus Query: 64 tattactgaataatatttgcatagtcaaaaaggaaacatttgcttagttgtttggttagt 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1066 tattactgaataatatttgcatagtcaaaaaggaaacatttgcttagttgtttggttagt 1007 Query: 124 tgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcggacgtccagagagtca 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1006 tgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcggacgtccagagagtca 947 Query: 184 ggttgtccctcaacagctgcatgatgagtgtcgagtccttgtaggagtcctcgttcagtg 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 946 ggttgtccctcaacagctgcatgatgagtgtcgagtccttgtaggagtcctcgttcagtg 887 Query: 244 tgtccagctcggctatcgcatcatcgaacgcctgtttagccaattggcaagctttgtctg 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 886 tgtccagctcggctatcgcatcatcgaacgcctgtttagccaattggcaagctttgtctg 827 Query: 304 gtgagttcaaaatctcatagtagaagactgagaagttaagggccagacccaaacggatgg 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 826 gtgagttcaaaatctcatagtagaagactgagaagttaagggccagacccaaacggatgg 767 Query: 364 gatgtgttggctgcattttacccttgctaatgtcaaatgcatcctggtaagcggtttgcg 423 ||||||||||||||||||| || ||| || || || ||||| || || ||| || Sbjct: 766 gatgtgttggctgcattttggtttttgcaatatcgaacgcctcctgataggcatttttcg 707 Query: 424 agtcatcgacaacggtgttgcgtgcatctcctgtggcaacctcggctaaatacctgtagt 483 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 706 agtcatcaacgacggtgttgcgtgcatctcctgtggcaacctcggctaaatacctgtagt 647 Query: 484 aatcacccttcatcttcaggtaaaacaccttgctctcgggattgctggcttttggaataa 543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 646 aatcacccttcatcttcaggtaaaacaccttgctctcgggattgctggcttttggaataa 587 Query: 544 g 544 | Sbjct: 586 g 586 >14-3-3zeta-RA feature: mRNA loc=2R:join(5161665..5161730,5164889..5165042, 5165350..5165463,5165574..5165700,5166335..5166458, 5166922..5167085, 5168100..5169107);ID=FBan0017870;gene_id=FBgn0004907;gen e_sym=14-3-3zeta;sym=CG17870;scaffold=AE003831;len=1757 Length = 1757 Score = 811 bits (409), Expect = 0.0 Identities = 463/481 (96%) Strand = Plus / Minus Query: 64 tattactgaataatatttgcatagtcaaaaaggaaacatttgcttagttgtttggttagt 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 960 tattactgaataatatttgcatagtcaaaaaggaaacatttgcttagttgtttggttagt 901 Query: 124 tgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcggacgtccagagagtca 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 900 tgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcggacgtccagagagtca 841 Query: 184 ggttgtccctcaacagctgcatgatgagtgtcgagtccttgtaggagtcctcgttcagtg 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 840 ggttgtccctcaacagctgcatgatgagtgtcgagtccttgtaggagtcctcgttcagtg 781 Query: 244 tgtccagctcggctatcgcatcatcgaacgcctgtttagccaattggcaagctttgtctg 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 780 tgtccagctcggctatcgcatcatcgaacgcctgtttagccaattggcaagctttgtctg 721 Query: 304 gtgagttcaaaatctcatagtagaagactgagaagttaagggccagacccaaacggatgg 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 720 gtgagttcaaaatctcatagtagaagactgagaagttaagggccagacccaaacggatgg 661 Query: 364 gatgtgttggctgcattttacccttgctaatgtcaaatgcatcctggtaagcggtttgcg 423 ||||||||||||||||||| || ||| || || || ||||| || || ||| || Sbjct: 660 gatgtgttggctgcattttggtttttgcaatatcgaacgcctcctgataggcatttttcg 601 Query: 424 agtcatcgacaacggtgttgcgtgcatctcctgtggcaacctcggctaaatacctgtagt 483 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 600 agtcatcaacgacggtgttgcgtgcatctcctgtggcaacctcggctaaatacctgtagt 541 Query: 484 aatcacccttcatcttcaggtaaaacaccttgctctcgggattgctggcttttggaataa 543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 540 aatcacccttcatcttcaggtaaaacaccttgctctcgggattgctggcttttggaataa 481 Query: 544 g 544 | Sbjct: 480 g 480 >14-3-3zeta-RF feature: mRNA loc=2R:join(5160321..5160371,5164889..5165042, 5165350..5165463,5165574..5165700,5166335..5166458, 5167267..5167430, 5168100..5169107);ID=FBan0017870;gene_id=FBgn0004907;gen e_sym=14-3-3zeta;sym=CG17870;scaffold=AE003831;len=1742 Length = 1742 Score = 620 bits (313), Expect = e-177 Identities = 439/481 (91%) Strand = Plus / Minus Query: 64 tattactgaataatatttgcatagtcaaaaaggaaacatttgcttagttgtttggttagt 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 945 tattactgaataatatttgcatagtcaaaaaggaaacatttgcttagttgtttggttagt 886 Query: 124 tgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcggacgtccagagagtca 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 885 tgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcggacgtccagagagtca 826 Query: 184 ggttgtccctcaacagctgcatgatgagtgtcgagtccttgtaggagtcctcgttcagtg 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 825 ggttgtccctcaacagctgcatgatgagtgtcgagtccttgtaggagtcctcgttcagtg 766 Query: 244 tgtccagctcggctatcgcatcatcgaacgcctgtttagccaattggcaagctttgtctg 303 |||||||||||||||||||||||||||||||||||||||| || || ||||| | ||| Sbjct: 765 tgtccagctcggctatcgcatcatcgaacgcctgtttagctaagtgacaagccctcgctg 706 Query: 304 gtgagttcaaaatctcatagtagaagactgagaagttaagggccagacccaaacggatgg 363 |||| || | ||| || || |||||||| || ||||| || || ||||| || | ||| | Sbjct: 705 gtgaattgataatttcgtaatagaagacggaaaagttgagagcaagacctaatctgattg 646 Query: 364 gatgtgttggctgcattttacccttgctaatgtcaaatgcatcctggtaagcggtttgcg 423 ||||||| ||||||||||| || ||| || || || ||||| || || ||| || Sbjct: 645 gatgtgtgggctgcattttggtttttgcaatatcgaacgcctcctgataggcttttttcg 586 Query: 424 agtcatcgacaacggtgttgcgtgcatctcctgtggcaacctcggctaaatacctgtagt 483 |||| || || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 585 agtcctcaacgacggtgttgcgtgcatctcctgtggcaacctcggctaaatacctgtagt 526 Query: 484 aatcacccttcatcttcaggtaaaacaccttgctctcgggattgctggcttttggaataa 543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 525 aatcacccttcatcttcaggtaaaacaccttgctctcgggattgctggcttttggaataa 466 Query: 544 g 544 | Sbjct: 465 g 465 >14-3-3zeta-RC feature: mRNA loc=2R:join(5161665..5161730,5164889..5165042, 5165350..5165463,5165574..5165700,5166335..5166458, 5167267..5167430, 5168100..5170320);ID=FBan0017870;gene_id=FBgn0004907;gen e_sym=14-3-3zeta;sym=CG17870;scaffold=AE003831;len=2970 Length = 2970 Score = 620 bits (313), Expect = e-177 Identities = 439/481 (91%) Strand = Plus / Minus Query: 64 tattactgaataatatttgcatagtcaaaaaggaaacatttgcttagttgtttggttagt 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 960 tattactgaataatatttgcatagtcaaaaaggaaacatttgcttagttgtttggttagt 901 Query: 124 tgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcggacgtccagagagtca 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 900 tgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcggacgtccagagagtca 841 Query: 184 ggttgtccctcaacagctgcatgatgagtgtcgagtccttgtaggagtcctcgttcagtg 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 840 ggttgtccctcaacagctgcatgatgagtgtcgagtccttgtaggagtcctcgttcagtg 781 Query: 244 tgtccagctcggctatcgcatcatcgaacgcctgtttagccaattggcaagctttgtctg 303 |||||||||||||||||||||||||||||||||||||||| || || ||||| | ||| Sbjct: 780 tgtccagctcggctatcgcatcatcgaacgcctgtttagctaagtgacaagccctcgctg 721 Query: 304 gtgagttcaaaatctcatagtagaagactgagaagttaagggccagacccaaacggatgg 363 |||| || | ||| || || |||||||| || ||||| || || ||||| || | ||| | Sbjct: 720 gtgaattgataatttcgtaatagaagacggaaaagttgagagcaagacctaatctgattg 661 Query: 364 gatgtgttggctgcattttacccttgctaatgtcaaatgcatcctggtaagcggtttgcg 423 ||||||| ||||||||||| || ||| || || || ||||| || || ||| || Sbjct: 660 gatgtgtgggctgcattttggtttttgcaatatcgaacgcctcctgataggcttttttcg 601 Query: 424 agtcatcgacaacggtgttgcgtgcatctcctgtggcaacctcggctaaatacctgtagt 483 |||| || || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 600 agtcctcaacgacggtgttgcgtgcatctcctgtggcaacctcggctaaatacctgtagt 541 Query: 484 aatcacccttcatcttcaggtaaaacaccttgctctcgggattgctggcttttggaataa 543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 540 aatcacccttcatcttcaggtaaaacaccttgctctcgggattgctggcttttggaataa 481 Query: 544 g 544 | Sbjct: 480 g 480 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9444 Number of Sequences: 18737 Number of extensions: 9444 Number of successful extensions: 222 Number of sequences better than 1.0e-100: 8 Number of HSP's better than 0.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 206 Number of HSP's gapped (non-prelim): 14 length of query: 544 length of database: 41,270,998 effective HSP length: 17 effective length of query: 527 effective length of database: 40,952,469 effective search space: 21581951163 effective search space used: 21581951163 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI106677|AI106677 GH06752.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH06752 5 similar to mfas: FBan0003359 'signal transduction' located on: 3R 87A8-87A9;: 04/10/2001, mRNA sequence. (764 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value mfas-RP feature: mRNA loc=3R:complement(7810602..7811227,7811289... 797 0.0 mfas-RO feature: mRNA loc=3R:complement(7810602..7811227,7811289... 797 0.0 mfas-RN feature: mRNA loc=3R:complement(7810602..7811227,7811289... 797 0.0 mfas-RM feature: mRNA loc=3R:complement(7810602..7811227,7811289... 797 0.0 mfas-RL feature: mRNA loc=3R:complement(7810602..7811227,7811289... 797 0.0 mfas-RK feature: mRNA loc=3R:complement(7810602..7811227,7811289... 797 0.0 mfas-RJ feature: mRNA loc=3R:complement(7810602..7811227,7811289... 797 0.0 mfas-RI feature: mRNA loc=3R:complement(7810602..7811227,7811289... 797 0.0 mfas-RH feature: mRNA loc=3R:complement(7810602..7811227,7811289... 797 0.0 mfas-RG feature: mRNA loc=3R:complement(7810602..7811227,7811289... 797 0.0 mfas-RF feature: mRNA loc=3R:complement(7810602..7811227,7811289... 797 0.0 mfas-RE feature: mRNA loc=3R:complement(7810602..7811227,7811289... 797 0.0 mfas-RD feature: mRNA loc=3R:complement(7810602..7811227,7811289... 797 0.0 mfas-RC feature: mRNA loc=3R:complement(7810602..7811227,7811289... 797 0.0 mfas-RB feature: mRNA loc=3R:complement(7810602..7811227,7811289... 797 0.0 ninaC-RB feature: mRNA loc=2L:join(7369949..7370096,7370616..737... 718 0.0 ninaC-RA feature: mRNA loc=2L:join(7369967..7370096,7370616..737... 718 0.0 >mfas-RP feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815068,7818482..7818614, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2717 Length = 2717 Score = 797 bits (402), Expect = 0.0 Identities = 402/402 (100%) Strand = Plus / Plus Query: 363 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1679 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 1738 Query: 423 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1739 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 1798 Query: 483 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1799 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 1858 Query: 543 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1859 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 1918 Query: 603 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1919 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 1978 Query: 663 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1979 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 2038 Query: 723 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 764 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2039 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 2080 >mfas-RO feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815065,7817812..7817883, 7818482..7818592, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2764 Length = 2764 Score = 797 bits (402), Expect = 0.0 Identities = 402/402 (100%) Strand = Plus / Plus Query: 363 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1726 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 1785 Query: 423 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1786 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 1845 Query: 483 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1846 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 1905 Query: 543 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1906 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 1965 Query: 603 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1966 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 2025 Query: 663 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2026 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 2085 Query: 723 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 764 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2086 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 2127 >mfas-RN feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815065,7818482..7818592, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2692 Length = 2692 Score = 797 bits (402), Expect = 0.0 Identities = 402/402 (100%) Strand = Plus / Plus Query: 363 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1654 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 1713 Query: 423 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1714 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 1773 Query: 483 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1774 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 1833 Query: 543 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1834 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 1893 Query: 603 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1894 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 1953 Query: 663 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1954 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 2013 Query: 723 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 764 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2014 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 2055 >mfas-RM feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815068,7817812..7817883, 7818482..7818614, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2789 Length = 2789 Score = 797 bits (402), Expect = 0.0 Identities = 402/402 (100%) Strand = Plus / Plus Query: 363 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1751 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 1810 Query: 423 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1811 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 1870 Query: 483 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1871 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 1930 Query: 543 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1931 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 1990 Query: 603 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1991 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 2050 Query: 663 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2051 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 2110 Query: 723 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 764 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2111 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 2152 >mfas-RL feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815068,7818482..7818592, 7818872..7819014);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2771 Length = 2771 Score = 797 bits (402), Expect = 0.0 Identities = 402/402 (100%) Strand = Plus / Plus Query: 363 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1733 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 1792 Query: 423 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1793 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 1852 Query: 483 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1853 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 1912 Query: 543 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1913 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 1972 Query: 603 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1973 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 2032 Query: 663 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2033 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 2092 Query: 723 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 764 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2093 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 2134 >mfas-RK feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815263,7818482..7818614, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2912 Length = 2912 Score = 797 bits (402), Expect = 0.0 Identities = 402/402 (100%) Strand = Plus / Plus Query: 363 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1874 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 1933 Query: 423 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1934 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 1993 Query: 483 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1994 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 2053 Query: 543 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2054 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 2113 Query: 603 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2114 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 2173 Query: 663 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2174 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 2233 Query: 723 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 764 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2234 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 2275 >mfas-RJ feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815263,7817812..7817883, 7818482..7818592, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2962 Length = 2962 Score = 797 bits (402), Expect = 0.0 Identities = 402/402 (100%) Strand = Plus / Plus Query: 363 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1924 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 1983 Query: 423 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1984 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 2043 Query: 483 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2044 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 2103 Query: 543 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2104 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 2163 Query: 603 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2164 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 2223 Query: 663 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2224 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 2283 Query: 723 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 764 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2284 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 2325 >mfas-RI feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815263,7818482..7818592, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2890 Length = 2890 Score = 797 bits (402), Expect = 0.0 Identities = 402/402 (100%) Strand = Plus / Plus Query: 363 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1852 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 1911 Query: 423 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1912 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 1971 Query: 483 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1972 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 2031 Query: 543 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2032 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 2091 Query: 603 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2092 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 2151 Query: 663 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2152 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 2211 Query: 723 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 764 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2212 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 2253 >mfas-RH feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815065,7818482..7818614, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2714 Length = 2714 Score = 797 bits (402), Expect = 0.0 Identities = 402/402 (100%) Strand = Plus / Plus Query: 363 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1676 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 1735 Query: 423 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1736 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 1795 Query: 483 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1796 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 1855 Query: 543 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1856 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 1915 Query: 603 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1916 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 1975 Query: 663 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1976 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 2035 Query: 723 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 764 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2036 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 2077 >mfas-RG feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815068,7817812..7817883, 7818482..7818592, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2767 Length = 2767 Score = 797 bits (402), Expect = 0.0 Identities = 402/402 (100%) Strand = Plus / Plus Query: 363 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1729 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 1788 Query: 423 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1789 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 1848 Query: 483 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1849 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 1908 Query: 543 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1909 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 1968 Query: 603 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1969 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 2028 Query: 663 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2029 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 2088 Query: 723 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 764 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2089 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 2130 >mfas-RF feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815068,7817812..7817883, 7818482..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=3163 Length = 3163 Score = 797 bits (402), Expect = 0.0 Identities = 402/402 (100%) Strand = Plus / Plus Query: 363 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2125 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 2184 Query: 423 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2185 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 2244 Query: 483 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2245 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 2304 Query: 543 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2305 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 2364 Query: 603 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2365 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 2424 Query: 663 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2425 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 2484 Query: 723 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 764 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2485 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 2526 >mfas-RE feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815065,7817812..7817883, 7818482..7818614, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2786 Length = 2786 Score = 797 bits (402), Expect = 0.0 Identities = 402/402 (100%) Strand = Plus / Plus Query: 363 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1748 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 1807 Query: 423 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1808 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 1867 Query: 483 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1868 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 1927 Query: 543 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1928 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 1987 Query: 603 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1988 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 2047 Query: 663 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2048 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 2107 Query: 723 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 764 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2108 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 2149 >mfas-RD feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815068, 7818482..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=3091 Length = 3091 Score = 797 bits (402), Expect = 0.0 Identities = 402/402 (100%) Strand = Plus / Plus Query: 363 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2053 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 2112 Query: 423 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2113 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 2172 Query: 483 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2173 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 2232 Query: 543 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2233 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 2292 Query: 603 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2293 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 2352 Query: 663 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2353 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 2412 Query: 723 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 764 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2413 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 2454 >mfas-RC feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815263,7818482..7818592, 7818872..7819014);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2966 Length = 2966 Score = 797 bits (402), Expect = 0.0 Identities = 402/402 (100%) Strand = Plus / Plus Query: 363 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1928 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 1987 Query: 423 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1988 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 2047 Query: 483 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2048 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 2107 Query: 543 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2108 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 2167 Query: 603 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2168 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 2227 Query: 663 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2228 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 2287 Query: 723 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 764 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2288 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 2329 >mfas-RB feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815068,7818482..7818592, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2695 Length = 2695 Score = 797 bits (402), Expect = 0.0 Identities = 402/402 (100%) Strand = Plus / Plus Query: 363 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1657 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 1716 Query: 423 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1717 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 1776 Query: 483 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1777 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 1836 Query: 543 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1837 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 1896 Query: 603 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1897 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 1956 Query: 663 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1957 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 2016 Query: 723 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 764 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2017 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 2058 >ninaC-RB feature: mRNA loc=2L:join(7369949..7370096,7370616..7370919, 7371015..7371878,7371937..7372874,7372943..7373235, 7373295..7373566,7373634..7373920,7373987..7374136, 7374192..7374289,7374353..7374406,7374989..7375176, 7375242..7375657,7375710..7375986, 7376038..7376575);ID=FBan0005125;gene_id=FBgn0002938;gene _sym=ninaC;sym=CG5125;scaffold=AE003617;len=4827 Length = 4827 Score = 718 bits (362), Expect = 0.0 Identities = 362/362 (100%) Strand = Plus / Minus Query: 1 aatttgaaaactttgccgcccttaactcgtttccgtgctagcaaagctcgcatcatggac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3355 aatttgaaaactttgccgcccttaactcgtttccgtgctagcaaagctcgcatcatggac 3296 Query: 61 tgcactttgatgaccttcttcacctgcagctcatacaatctggctaagaactcatcgtta 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3295 tgcactttgatgaccttcttcacctgcagctcatacaatctggctaagaactcatcgtta 3236 Query: 121 tagtagcgcaaaaacaccttggtcttgcccaaggcccagccttccatcttgaggcgcaag 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3235 tagtagcgcaaaaacaccttggtcttgcccaaggcccagccttccatcttgaggcgcaag 3176 Query: 181 aataatagacgacagttatccttggtcatttccacgggctcatcaaagtcaaaggcaagg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3175 aataatagacgacagttatccttggtcatttccacgggctcatcaaagtcaaaggcaagg 3116 Query: 241 aattggtatcgccttaggaactcgtcgaatggcagacgcgagctgaatcccttctggcga 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3115 aattggtatcgccttaggaactcgtcgaatggcagacgcgagctgaatcccttctggcga 3056 Query: 301 gcaataacagtgtccagaactcccaaggccttcatctgttgctggacgacatccgagtgg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3055 gcaataacagtgtccagaactcccaaggccttcatctgttgctggacgacatccgagtgg 2996 Query: 361 aa 362 || Sbjct: 2995 aa 2994 >ninaC-RA feature: mRNA loc=2L:join(7369967..7370096,7370616..7370919, 7371015..7371878,7371937..7372874,7372943..7373235, 7373295..7373566,7373634..7373920,7373987..7374136, 7374192..7374289, 7374353..7375007);ID=FBan0005125;gene_id=FBgn0002938;gene _sym=ninaC;sym=CG5125;scaffold=AE003617;len=3991 Length = 3991 Score = 718 bits (362), Expect = 0.0 Identities = 362/362 (100%) Strand = Plus / Minus Query: 1 aatttgaaaactttgccgcccttaactcgtttccgtgctagcaaagctcgcatcatggac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3337 aatttgaaaactttgccgcccttaactcgtttccgtgctagcaaagctcgcatcatggac 3278 Query: 61 tgcactttgatgaccttcttcacctgcagctcatacaatctggctaagaactcatcgtta 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3277 tgcactttgatgaccttcttcacctgcagctcatacaatctggctaagaactcatcgtta 3218 Query: 121 tagtagcgcaaaaacaccttggtcttgcccaaggcccagccttccatcttgaggcgcaag 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3217 tagtagcgcaaaaacaccttggtcttgcccaaggcccagccttccatcttgaggcgcaag 3158 Query: 181 aataatagacgacagttatccttggtcatttccacgggctcatcaaagtcaaaggcaagg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3157 aataatagacgacagttatccttggtcatttccacgggctcatcaaagtcaaaggcaagg 3098 Query: 241 aattggtatcgccttaggaactcgtcgaatggcagacgcgagctgaatcccttctggcga 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3097 aattggtatcgccttaggaactcgtcgaatggcagacgcgagctgaatcccttctggcga 3038 Query: 301 gcaataacagtgtccagaactcccaaggccttcatctgttgctggacgacatccgagtgg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3037 gcaataacagtgtccagaactcccaaggccttcatctgttgctggacgacatccgagtgg 2978 Query: 361 aa 362 || Sbjct: 2977 aa 2976 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 19,287 Number of Sequences: 18737 Number of extensions: 19287 Number of successful extensions: 497 Number of sequences better than 1.0e-100: 17 Number of HSP's better than 0.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 480 Number of HSP's gapped (non-prelim): 17 length of query: 764 length of database: 41,270,998 effective HSP length: 17 effective length of query: 747 effective length of database: 40,952,469 effective search space: 30591494343 effective search space used: 30591494343 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI106848|AI106848 GH06087.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH06087 5 similar to CG9510: FBan0009510 'enzyme' located on: 2L 29F6-29F6;: 04/10/2001, mRNA sequence. (567 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG33085-RD feature: mRNA loc=2L:complement(8932011..8932435,8932... 1124 0.0 CG33085-RC feature: mRNA loc=2L:complement(8932011..8932428,8932... 1124 0.0 CG33085-RA feature: mRNA loc=2L:complement(8932011..8932428,8932... 1124 0.0 >CG33085-RD feature: mRNA loc=2L:complement(8932011..8932435,8932486..8932886, 8933229..8934017);ID=FBan0033085;gene_id=FBgn0053085;gen e_sym=CG33085;sym=CG33085;scaffold=AE003623;len=1615 Length = 1615 Score = 1124 bits (567), Expect = 0.0 Identities = 567/567 (100%) Strand = Plus / Plus Query: 1 atgacccagatccccgagagctgttataagatgtggggtggtaggttcaccgaggggccg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 63 atgacccagatccccgagagctgttataagatgtggggtggtaggttcaccgaggggccg 122 Query: 61 catgaggctctccattcgctgaataacagcctgccctacgattctcgcctctatgcggat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 123 catgaggctctccattcgctgaataacagcctgccctacgattctcgcctctatgcggat 182 Query: 121 gatttggacgccagcaaggcgtatgcagaggcactccatcgagctggtctcatcaactca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 183 gatttggacgccagcaaggcgtatgcagaggcactccatcgagctggtctcatcaactca 242 Query: 181 gccgaggcggataagttggtaaagaatctggagctgttgcgattcgattggatcgaggga 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 243 gccgaggcggataagttggtaaagaatctggagctgttgcgattcgattggatcgaggga 302 Query: 241 actgtgaagattctacccggtgacgaggatgtgcacacggtgaacgagcgattgctggtg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 303 actgtgaagattctacccggtgacgaggatgtgcacacggtgaacgagcgattgctggtg 362 Query: 301 gagattaccggcgaactgggccagcggcttcacacgggcagaagcagaaatgaccaggtg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 363 gagattaccggcgaactgggccagcggcttcacacgggcagaagcagaaatgaccaggtg 422 Query: 361 gtcacggacatgaagctatggcttcgcaaggccattcgtgagaccttgggccggctgagt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 423 gtcacggacatgaagctatggcttcgcaaggccattcgtgagaccttgggccggctgagt 482 Query: 421 ggcatcattgaaactgccaccaggcaggcggaactccacctgggcgtcctcatgccagga 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 483 ggcatcattgaaactgccaccaggcaggcggaactccacctgggcgtcctcatgccagga 542 Query: 481 tacacgcatctgcagcgggcccagaccgttcagttctcccactggctgctctcgcacgcg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 543 tacacgcatctgcagcgggcccagaccgttcagttctcccactggctgctctcgcacgcg 602 Query: 541 tttgcattaagggaagatggccagcgg 567 ||||||||||||||||||||||||||| Sbjct: 603 tttgcattaagggaagatggccagcgg 629 >CG33085-RC feature: mRNA loc=2L:complement(8932011..8932428,8932486..8932886, 8933229..8934683,8934740..8934886,8935058..8935302, 8935360..8935495);ID=FBan0033085;gene_id=FBgn0053085;gene _sym=CG33085;sym=CG33085;scaffold=AE003623;len=2802 Length = 2802 Score = 1124 bits (567), Expect = 0.0 Identities = 567/567 (100%) Strand = Plus / Plus Query: 1 atgacccagatccccgagagctgttataagatgtggggtggtaggttcaccgaggggccg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1257 atgacccagatccccgagagctgttataagatgtggggtggtaggttcaccgaggggccg 1316 Query: 61 catgaggctctccattcgctgaataacagcctgccctacgattctcgcctctatgcggat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1317 catgaggctctccattcgctgaataacagcctgccctacgattctcgcctctatgcggat 1376 Query: 121 gatttggacgccagcaaggcgtatgcagaggcactccatcgagctggtctcatcaactca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1377 gatttggacgccagcaaggcgtatgcagaggcactccatcgagctggtctcatcaactca 1436 Query: 181 gccgaggcggataagttggtaaagaatctggagctgttgcgattcgattggatcgaggga 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1437 gccgaggcggataagttggtaaagaatctggagctgttgcgattcgattggatcgaggga 1496 Query: 241 actgtgaagattctacccggtgacgaggatgtgcacacggtgaacgagcgattgctggtg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1497 actgtgaagattctacccggtgacgaggatgtgcacacggtgaacgagcgattgctggtg 1556 Query: 301 gagattaccggcgaactgggccagcggcttcacacgggcagaagcagaaatgaccaggtg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1557 gagattaccggcgaactgggccagcggcttcacacgggcagaagcagaaatgaccaggtg 1616 Query: 361 gtcacggacatgaagctatggcttcgcaaggccattcgtgagaccttgggccggctgagt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1617 gtcacggacatgaagctatggcttcgcaaggccattcgtgagaccttgggccggctgagt 1676 Query: 421 ggcatcattgaaactgccaccaggcaggcggaactccacctgggcgtcctcatgccagga 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1677 ggcatcattgaaactgccaccaggcaggcggaactccacctgggcgtcctcatgccagga 1736 Query: 481 tacacgcatctgcagcgggcccagaccgttcagttctcccactggctgctctcgcacgcg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1737 tacacgcatctgcagcgggcccagaccgttcagttctcccactggctgctctcgcacgcg 1796 Query: 541 tttgcattaagggaagatggccagcgg 567 ||||||||||||||||||||||||||| Sbjct: 1797 tttgcattaagggaagatggccagcgg 1823 >CG33085-RA feature: mRNA loc=2L:complement(8932011..8932428,8932486..8932886, 8933229..8934683,8934740..8934886,8935058..8935302, 8935360..8935495);ID=FBan0033085;gene_id=FBgn0053085;gene _sym=CG33085;sym=CG33085;scaffold=AE003623;len=2802 Length = 2802 Score = 1124 bits (567), Expect = 0.0 Identities = 567/567 (100%) Strand = Plus / Plus Query: 1 atgacccagatccccgagagctgttataagatgtggggtggtaggttcaccgaggggccg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1257 atgacccagatccccgagagctgttataagatgtggggtggtaggttcaccgaggggccg 1316 Query: 61 catgaggctctccattcgctgaataacagcctgccctacgattctcgcctctatgcggat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1317 catgaggctctccattcgctgaataacagcctgccctacgattctcgcctctatgcggat 1376 Query: 121 gatttggacgccagcaaggcgtatgcagaggcactccatcgagctggtctcatcaactca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1377 gatttggacgccagcaaggcgtatgcagaggcactccatcgagctggtctcatcaactca 1436 Query: 181 gccgaggcggataagttggtaaagaatctggagctgttgcgattcgattggatcgaggga 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1437 gccgaggcggataagttggtaaagaatctggagctgttgcgattcgattggatcgaggga 1496 Query: 241 actgtgaagattctacccggtgacgaggatgtgcacacggtgaacgagcgattgctggtg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1497 actgtgaagattctacccggtgacgaggatgtgcacacggtgaacgagcgattgctggtg 1556 Query: 301 gagattaccggcgaactgggccagcggcttcacacgggcagaagcagaaatgaccaggtg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1557 gagattaccggcgaactgggccagcggcttcacacgggcagaagcagaaatgaccaggtg 1616 Query: 361 gtcacggacatgaagctatggcttcgcaaggccattcgtgagaccttgggccggctgagt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1617 gtcacggacatgaagctatggcttcgcaaggccattcgtgagaccttgggccggctgagt 1676 Query: 421 ggcatcattgaaactgccaccaggcaggcggaactccacctgggcgtcctcatgccagga 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1677 ggcatcattgaaactgccaccaggcaggcggaactccacctgggcgtcctcatgccagga 1736 Query: 481 tacacgcatctgcagcgggcccagaccgttcagttctcccactggctgctctcgcacgcg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1737 tacacgcatctgcagcgggcccagaccgttcagttctcccactggctgctctcgcacgcg 1796 Query: 541 tttgcattaagggaagatggccagcgg 567 ||||||||||||||||||||||||||| Sbjct: 1797 tttgcattaagggaagatggccagcgg 1823 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,917 Number of Sequences: 18737 Number of extensions: 13917 Number of successful extensions: 345 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 342 Number of HSP's gapped (non-prelim): 3 length of query: 567 length of database: 41,270,998 effective HSP length: 17 effective length of query: 550 effective length of database: 40,952,469 effective search space: 22523857950 effective search space used: 22523857950 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI106854|AI106854 GH06096.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH06096 5prime, mRNA sequence. (620 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value BEST:GH09435-RA feature: mRNA loc=2L:join(15982656..15983099,159... 1104 0.0 >BEST:GH09435-RA feature: mRNA loc=2L:join(15982656..15983099, 15983172..15983551);ID=FBan0013245;gene_id=FBgn0045827;g ene_sym=BEST:GH09435;sym=CG13245;scaffold=AE003649;len=8 24 Length = 824 Score = 1104 bits (557), Expect = 0.0 Identities = 557/557 (100%) Strand = Plus / Plus Query: 64 caatagtaaaaagagcacacgtttcggaaaacctaaaccaagtcaagatgtgtggtggct 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 76 caatagtaaaaagagcacacgtttcggaaaacctaaaccaagtcaagatgtgtggtggct 135 Query: 124 gggcctgtgcctcctacaatatcgcctgctgcaatccccgcctgtcgacactgcgattct 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 136 gggcctgtgcctcctacaatatcgcctgctgcaatccccgcctgtcgacactgcgattct 195 Query: 184 ctggccgctgtttcgcacccacgccctgcggtccatgtgatgactgttccatttacggcg 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 196 ctggccgctgtttcgcacccacgccctgcggtccatgtgatgactgttccatttacggcg 255 Query: 244 gttgctgcggtggctgctgcgggtgctaggtgatctctgacctggagtagccacagagtt 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 256 gttgctgcggtggctgctgcgggtgctaggtgatctctgacctggagtagccacagagtt 315 Query: 304 gggtggagagtccggaattcaactatcttgaagtaggccttgggaactgttggctgtcag 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 316 gggtggagagtccggaattcaactatcttgaagtaggccttgggaactgttggctgtcag 375 Query: 364 ccatgaaacaaatatcattcagtcccagtccagtccttgtcggaacaacaaccttaaacg 423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 376 ccatgaaacaaatatcattcagtcccagtccagtccttgtcggaacaacaaccttaaacg 435 Query: 424 ttcaccgggttcccacatccgtttcctaaccatgtgtggtggctgggcttgtgcctcctt 483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 436 ttcaccgggttcccacatccgtttcctaaccatgtgtggtggctgggcttgtgcctcctt 495 Query: 484 tgacctggcctgcaataatcctcccttgtcaacactgcgtttcaccggtcgggactttat 543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 496 tgacctggcctgcaataatcctcccttgtcaacactgcgtttcaccggtcgggactttat 555 Query: 544 acccacgccctgcggtccttgcgataagtgttatgttctagatactagccgcaagaagaa 603 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 556 acccacgccctgcggtccttgcgataagtgttatgttctagatactagccgcaagaagaa 615 Query: 604 caccaacaactgctatg 620 ||||||||||||||||| Sbjct: 616 caccaacaactgctatg 632 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,999 Number of Sequences: 18737 Number of extensions: 12999 Number of successful extensions: 361 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 355 Number of HSP's gapped (non-prelim): 2 length of query: 620 length of database: 41,270,998 effective HSP length: 17 effective length of query: 603 effective length of database: 40,952,469 effective search space: 24694338807 effective search space used: 24694338807 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI107052|AI107052 GH06341.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH06341 5 similar to CG5390: FBan0005390 'endopeptidase' located on: 2L 31D5-31D6;: 04/10/2001, mRNA sequence. (657 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG5390-RA feature: mRNA loc=2L:complement(10296472..10297178,102... 1302 0.0 >CG5390-RA feature: mRNA loc=2L:complement(10296472..10297178,10297236..10297491, 10297558..10297918, 10298921..10299003);ID=FBan0005390;gene_id=FBgn0032213;g ene_sym=CG5390;sym=CG5390;scaffold=AE003628;len=1407 Length = 1407 Score = 1302 bits (657), Expect = 0.0 Identities = 657/657 (100%) Strand = Plus / Plus Query: 1 ctcagcgaacgttgcgctactttgataaattaagaatatgatattactaaattgcctagt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 51 ctcagcgaacgttgcgctactttgataaattaagaatatgatattactaaattgcctagt 110 Query: 61 aatatgcctgtgcatattttcctgtggtgcccaggactcttccttggacaaattgatatc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 111 aatatgcctgtgcatattttcctgtggtgcccaggactcttccttggacaaattgatatc 170 Query: 121 ggacatctttaaaacggacgaaacacccaaaccatcatcccctcccccgccagtggtgaa 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 171 ggacatctttaaaacggacgaaacacccaaaccatcatcccctcccccgccagtggtgaa 230 Query: 181 ccccaaggattcgtccggtagcacgggatccgaaaacggaggatcgagttcaacgcagta 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 231 ccccaaggattcgtccggtagcacgggatccgaaaacggaggatcgagttcaacgcagta 290 Query: 241 ccagtcctgtggcgatcaaaaggagtgtgttcctcgctggttgtgcgccaatgatacgat 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 291 ccagtcctgtggcgatcaaaaggagtgtgttcctcgctggttgtgcgccaatgatacgat 350 Query: 301 taacaccagtggcgatggtatcattgacattcgacttggtacggacgccgaatgcaagaa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 351 taacaccagtggcgatggtatcattgacattcgacttggtacggacgccgaatgcaagaa 410 Query: 361 ctatttggatctttgctgtgatctgcccaacaagagaaaagatccgattttcgagtttaa 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 411 ctatttggatctttgctgtgatctgcccaacaagagaaaagatccgattttcgagtttaa 470 Query: 421 gcctgatcatcccgagggctgcggttaccaaaatcccaacggcgttggctttaagatcac 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 471 gcctgatcatcccgagggctgcggttaccaaaatcccaacggcgttggctttaagatcac 530 Query: 481 tggagctgtcaaccaggaggccgaattcggcgaattcccctggatgctggccattctccg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 531 tggagctgtcaaccaggaggccgaattcggcgaattcccctggatgctggccattctccg 590 Query: 541 ggaagaaggcaaccttaacctgtacgaatgtggaggagcattgatagctcccaatgtggt 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 591 ggaagaaggcaaccttaacctgtacgaatgtggaggagcattgatagctcccaatgtggt 650 Query: 601 tctgaccgcggcgcattgcgttcacaacaaacagcccagtagcattgttgtgagagc 657 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 651 tctgaccgcggcgcattgcgttcacaacaaacagcccagtagcattgttgtgagagc 707 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,779 Number of Sequences: 18737 Number of extensions: 13779 Number of successful extensions: 269 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 268 Number of HSP's gapped (non-prelim): 1 length of query: 657 length of database: 41,270,998 effective HSP length: 17 effective length of query: 640 effective length of database: 40,952,469 effective search space: 26209580160 effective search space used: 26209580160 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI107438|AI107438 GH05123.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH05123 5 similar to CG8037: FBan0008037 'DNA-directed RNA polymerase III' located on: 3L 76D6-76D6;: 04/10/2001, mRNA sequence. (629 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 17,082 Number of Sequences: 18737 Number of extensions: 17082 Number of successful extensions: 816 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 816 Number of HSP's gapped (non-prelim): 0 length of query: 629 length of database: 41,270,998 effective HSP length: 17 effective length of query: 612 effective length of database: 40,952,469 effective search space: 25062911028 effective search space used: 25062911028 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI107527|AI107527 GH05253.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH05253 5prime, mRNA sequence. (652 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG30156-RA feature: mRNA loc=2R:complement(2042348..2042587,2042... 1287 0.0 >CG30156-RA feature: mRNA loc=2R:complement(2042348..2042587,2042645..2042811, 2042871..2043888);ID=FBan0030156;gene_id=FBgn0050156;gen e_sym=CG30156;sym=CG30156;scaffold=AE003790;len=1425 Length = 1425 Score = 1287 bits (649), Expect = 0.0 Identities = 651/652 (99%) Strand = Plus / Plus Query: 1 ttgactggcgaaagtcaatttgtatttaagtttgcagctacatatacatatacagtcaac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 17 ttgactggcgaaagtcaatttgtatttaagtttgcagctacatatacatatacagtcaac 76 Query: 61 ttagttcgaaactatttcggctacctctaatatacatacaaaagcactttgttaaattca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77 ttagttcgaaactatttcggctacctctaatatacatacaaaagcactttgttaaattca 136 Query: 121 ccaactcggtggattgtcccagaacaacaaaccaaaatttaaaatttgcaaacgaacaga 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 137 ccaactcggtggattgtcccagaacaacaaaccaaaatttaaaatttgcaaacgaacaga 196 Query: 181 gaaaaacgaatccttttttgtcttctcacgctgctgggaaggagaagaaagtaaccaaga 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 197 gaaaaacgaatccttttttgtcttctcacgctgctgggaaggagaagaaagtaaccaaga 256 Query: 241 actggaggacgacgacttcacaatgggaatcctgcaggcgaggaggcatcactgcgtcga 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 257 actggaggacgacgacttcacaatgggaatcctgcaggcgaggaggcatcactgcgtcga 316 Query: 301 caaggtggtgagtgacctgtgcctgggacactacgagcacgctctgaggcagatcaacga 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 317 caaggtggtgagtgacctgtgcctgggacactacgagcacgctctgaggcagatcaacga 376 Query: 361 ggatctggaaggcttacagaaccacgatgagatcatggcgctgctggagctaaagaatat 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 377 ggatctggaaggcttacagaaccacgatgagatcatggcgctgctggagctaaagaatat 436 Query: 421 cattttgagactgaggctgaagggcgaggcccagcggaccataggcccaactcgcaaatc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 437 cattttgagactgaggctgaagggcgaggcccagcggaccataggcccaactcgcaaatc 496 Query: 481 tgacgccctgccccacaagttcacactcgagatgctggacgtggtgcagaaggtcctgcg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 497 tgacgccctgccccacaagttcacactcgagatgctggacgtggtgcagaaggtcctgcg 556 Query: 541 gtgccgcaatcactacgaggtgctgcgcatctctcatcatgccacctactccgaggtgaa 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 557 gtgccgcaatcactacgaggtgctgcgcatctctcatcatgccacctactccgaggtgaa 616 Query: 601 gcgggcctaccacaagctggccctgcgcctncatccggacaagaacaaatct 652 |||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 617 gcgggcctaccacaagctggccctgcgcctccatccggacaagaacaaatct 668 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 20,295 Number of Sequences: 18737 Number of extensions: 20295 Number of successful extensions: 684 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 683 Number of HSP's gapped (non-prelim): 1 length of query: 652 length of database: 41,270,998 effective HSP length: 17 effective length of query: 635 effective length of database: 40,952,469 effective search space: 26004817815 effective search space used: 26004817815 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI107652|AI107652 GH05452.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH05452 5prime, mRNA sequence. (682 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG5762-RA feature: mRNA loc=3R:complement(20177084..20177458,201... 1140 0.0 >CG5762-RA feature: mRNA loc=3R:complement(20177084..20177458, 20177517..20178068);ID=FBan0005762;gene_id=FBgn0039190;g ene_sym=CG5762;sym=CG5762;scaffold=AE003747;len=927 Length = 927 Score = 1140 bits (575), Expect = 0.0 Identities = 584/587 (99%) Strand = Plus / Plus Query: 93 tatcttccgagaatggttaacatccacggtggcactcggatgatggtgaaccgttgcatc 152 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 127 tatcttccgagaatggttaacatccacggtggcactcggatgatggtgaaccgttgcatc 186 Query: 153 gagctcctccgtgcgcggatcgaatgcgcctcaacgcgtcacattgccaggcgttcccag 212 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 187 gagctcctccgtgcgcggatcgaatgcgcctcaacgcgtcacattgccaggcgttcccag 246 Query: 213 cggcccagagtgggcagccaatacctgccagacgatcagatactcagggagcgggagaaa 272 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 247 cggcccagagtgggcagccaatacctgccagacgatcagatactcagggagcgggagaaa 306 Query: 273 gcggatgtgtacaagaagaacaagcgacgctccatgtgggagcaggacgagggccacgga 332 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 307 gcggatgtgtacaagaagaacaagcgacgctccatgtgggagcaggacgagggccacgga 366 Query: 333 cgcatctcggtcggggacgatcaggaacgcttcgataacgagcagtaccatccgcgcgaa 392 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 367 cgcatctcggtcggggacgatcaggaacgcttcgataacgagcagtaccatccgcgcgaa 426 Query: 393 ctggagaagcgcaagtactagtgcacctgggttaatttcccggacagtgtggcgaccaaa 452 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 427 ctggagaagcgcaagtacgagtgcacctgggttaatttcccggacagtgtggcgaccaaa 486 Query: 453 cgaaatcgtagacgggactttctggagtcgatggaaactgaggctcctcgacgccgccga 512 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 487 cgaaatcgtagacgggactttctggagtcgatggaaactgaggctcctcgacgccgccga 546 Query: 513 gcccaggaagaaagaccgagtacggcaaagccatgtgacgacgaggcccgtgcctttatc 572 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 547 gcccaggaagaaagaccgagtacggcaaagccatgtgacgacgaggcccgtgcctttatc 606 Query: 573 aaccaatgggacaccaatgcggcgatgatccaacgcaacaaatttgctcgtgccaccgat 632 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 607 aaccaatgggacaccaatgcggcgatgatccaacgcaacaaatttgctcgtgccaccgat 666 Query: 633 agctgtccaccacccattgtatctctccgggtgtcaaacccctacag 679 |||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct: 667 agctgtccaccacccattgtatctctccggttgtcaaacgcctacag 713 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,587 Number of Sequences: 18737 Number of extensions: 14587 Number of successful extensions: 322 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 320 Number of HSP's gapped (non-prelim): 2 length of query: 682 length of database: 41,270,998 effective HSP length: 17 effective length of query: 665 effective length of database: 40,952,469 effective search space: 27233391885 effective search space used: 27233391885 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI108133|AI108133 GH06882.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH06882 5prime, mRNA sequence. (585 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG3775-RA feature: mRNA loc=X:12532370..12534896;ID=FBan0003775;... 1084 0.0 >CG3775-RA feature: mRNA loc=X:12532370..12534896;ID=FBan0003775;gene_id=FBgn0030 425;gene_sym=CG3775;sym=CG3775;scaffold=AE003490;len=252 7 Length = 2527 Score = 1084 bits (547), Expect = 0.0 Identities = 562/567 (99%) Strand = Plus / Plus Query: 19 atgaagccaccactatcatcgatcacccggctggtagtgatcctcggcgtgatgctgctg 78 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atgaagccaccactatcatcgatcacccggctggtagtgatcctcggcgtgatgctgctg 60 Query: 79 aagctggcggcagcccaggattgtcagcagcaattggacaacgacactgatgcggaggtg 138 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 aagctggcggcagcccaggattgtcagcagcaattggacaacgacactgatgcggaggtg 120 Query: 139 aagccgtgcgagaattttcatcagtatgcctgcggaaattggtattcgaacacttcgcag 198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aagccgtgcgagaattttcatcagtatgcctgcggaaattggtattcgaacacttcgcag 180 Query: 199 cgaattctcggtgcccacgatatgcgatccaagtgggtggcaaatctgaagcttcagctt 258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 cgaattctcggtgcccacgatatgcgatccaagtgggtggcaaatctgaagcttcagctt 240 Query: 259 atccgatatctagaggaatcatcatccaccgatagcttcagtgccaataccttcgtcacc 318 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 241 atccgatatctagaggaatcatcatccaccgatagcttcagtgccaatacctccgtcacc 300 Query: 319 acttcaaccggccagttgggcacattatacagatgctgcttgttgagtggccagtcgata 378 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 acttcaaccgcccagttgggcacattatacagatgctgcttgttgagtggccagtcgata 360 Query: 379 agaacctacaccgatgccctgtcacgaagtggtgccaacttccctctgctggccaaccat 438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 agaacctacaccgatgccctgtcacgaagtggtgccaacttccctctgctggccaaccat 420 Query: 439 actggtggatccttcgattgggttctggccaatgtccgcctgcgtacgtacggagctcag 498 |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| Sbjct: 421 actggtggatccttcgattgggttctggccaatgccgccctgcgtacgtacggagctcag 480 Query: 499 ggtctttggcgactcttggtcaaggacaattggcagtcggcggatcagaggatcttctac 558 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 ggtctttggcgactcttggtcaaggacaattggcagtcggcggatcagaggatcttctac 540 Query: 559 atgctgccacccaagttcgatctactg 585 ||||||||||||||||||||||||||| Sbjct: 541 atgctgccacccaagttcgatctactg 567 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,410 Number of Sequences: 18737 Number of extensions: 15410 Number of successful extensions: 330 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 329 Number of HSP's gapped (non-prelim): 1 length of query: 585 length of database: 41,270,998 effective HSP length: 17 effective length of query: 568 effective length of database: 40,952,469 effective search space: 23261002392 effective search space used: 23261002392 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI109245|AI109245 GH08376.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH08376 5prime, mRNA sequence. (589 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG7291-RA feature: mRNA loc=2L:1989956..1990614;ID=FBan0007291;g... 1168 0.0 >CG7291-RA feature: mRNA loc=2L:1989956..1990614;ID=FBan0007291;gene_id=FBgn00313 81;gene_sym=CG7291;sym=CG7291;scaffold=AE003584;len=659 Length = 659 Score = 1168 bits (589), Expect = 0.0 Identities = 589/589 (100%) Strand = Plus / Plus Query: 1 tgaagaggcagaaagaggcgagagccagcggaaaagccacccgatacgtttaccttgtaa 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 20 tgaagaggcagaaagaggcgagagccagcggaaaagccacccgatacgtttaccttgtaa 79 Query: 61 ttcaattaagtggaagaaaatgctgaggtacgcggtaattgcctgtgctgcactggtggt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 80 ttcaattaagtggaagaaaatgctgaggtacgcggtaattgcctgtgctgcactggtggt 139 Query: 121 cttcgccggagccctcgagttcagcgattgcggatcgaagacgggcaagttcacccgggt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 140 cttcgccggagccctcgagttcagcgattgcggatcgaagacgggcaagttcacccgggt 199 Query: 181 ggccatcgagggctgcgacaccaccaaggcggagtgcatcctcaagaggaacaccacggt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 200 ggccatcgagggctgcgacaccaccaaggcggagtgcatcctcaagaggaacaccacggt 259 Query: 241 cagcttctccatcgacttcgccctggccgaggaggcaacggcggtgaagacagtcgtcca 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 260 cagcttctccatcgacttcgccctggccgaggaggcaacggcggtgaagacagtcgtcca 319 Query: 301 cggcaaggtcctgggcatcgagatgcccttcccgctggccaatcccgatgcctgtgtgga 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 320 cggcaaggtcctgggcatcgagatgcccttcccgctggccaatcccgatgcctgtgtgga 379 Query: 361 cagtggtctgaagtgcccgttggagaaggacgagtcgtaccgctacacggccaccctgcc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 380 cagtggtctgaagtgcccgttggagaaggacgagtcgtaccgctacacggccaccctgcc 439 Query: 421 ggtgctgagatcctaccccaaagtgtccgtgctggtcaagtgggagctgcaggatcagga 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 440 ggtgctgagatcctaccccaaagtgtccgtgctggtcaagtgggagctgcaggatcagga 499 Query: 481 cggagcggacatcatctgcgtcgagattcccgctaaaattcagtaggcagtcaccctcta 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 500 cggagcggacatcatctgcgtcgagattcccgctaaaattcagtaggcagtcaccctcta 559 Query: 541 aattaacctcgaaatactggggagagcgcactgagcactcctgattttc 589 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 560 aattaacctcgaaatactggggagagcgcactgagcactcctgattttc 608 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,647 Number of Sequences: 18737 Number of extensions: 15647 Number of successful extensions: 456 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 455 Number of HSP's gapped (non-prelim): 1 length of query: 589 length of database: 41,270,998 effective HSP length: 17 effective length of query: 572 effective length of database: 40,952,469 effective search space: 23424812268 effective search space used: 23424812268 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI109538|AI109538 GH08762.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH08762 5 similar to Z31368: D.melanogaster (MS) DNA for gypsy 7K retrotransposon, mRNA sequence. (664 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,688 Number of Sequences: 18737 Number of extensions: 10688 Number of successful extensions: 267 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 267 Number of HSP's gapped (non-prelim): 0 length of query: 664 length of database: 41,270,998 effective HSP length: 17 effective length of query: 647 effective length of database: 40,952,469 effective search space: 26496247443 effective search space used: 26496247443 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI109752|AI109752 GH09055.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH09055 5 similar to CG17524: FBan0017524 'enzyme' located on: 2R 55C9-55C9;: 04/10/2001, mRNA sequence. (750 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG17524-RA feature: mRNA loc=2R:13464437..13465189;ID=FBan001752... 1455 0.0 >CG17524-RA feature: mRNA loc=2R:13464437..13465189;ID=FBan0017524;gene_id=FBgn003 4337;gene_sym=CG17524;sym=CG17524;scaffold=AE003799;len= 753 Length = 753 Score = 1455 bits (734), Expect = 0.0 Identities = 734/734 (100%) Strand = Plus / Plus Query: 4 cgccttacagcacactacagacatgggaaaacttacgctttacggaatcgacggtagtcc 63 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19 cgccttacagcacactacagacatgggaaaacttacgctttacggaatcgacggtagtcc 78 Query: 64 tccggtccgttcggtgctgctcacgctgagagccttgaatttggacttcgactacaagat 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79 tccggtccgttcggtgctgctcacgctgagagccttgaatttggacttcgactacaagat 138 Query: 124 cgtcaatctgatggagaaggagcacctgaagccagagttcctcaagatcaatcccctgca 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 139 cgtcaatctgatggagaaggagcacctgaagccagagttcctcaagatcaatcccctgca 198 Query: 184 caccgtgcccgctctggatgataatggtttctatttggccgacagccatgctattaactc 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 199 caccgtgcccgctctggatgataatggtttctatttggccgacagccatgctattaactc 258 Query: 244 ctacctggtgagcaagtacggccggaatgattctctataccccaaggatctgaagaagcg 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 259 ctacctggtgagcaagtacggccggaatgattctctataccccaaggatctgaagaagcg 318 Query: 304 agccattgtcgatcagcgtctgcactacgactccagcgtggtgacctcgacaggaagggc 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 319 agccattgtcgatcagcgtctgcactacgactccagcgtggtgacctcgacaggaagggc 378 Query: 364 tatcacctttccgctcttctgggagaacaagacggagattccacaggcgaggatcgatgc 423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 379 tatcacctttccgctcttctgggagaacaagacggagattccacaggcgaggatcgatgc 438 Query: 424 cctggagggtgtctacaagtccctcaatctgtttctggagaatggcaattatctggccgg 483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 439 cctggagggtgtctacaagtccctcaatctgtttctggagaatggcaattatctggccgg 498 Query: 484 cgacaacctgaccattgccgatttccacgtcatcgccggcttgacaggatttttcgtgtt 543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 499 cgacaacctgaccattgccgatttccacgtcatcgccggcttgacaggatttttcgtgtt 558 Query: 544 cctgcctgtagatgccactaagtatcccgagctggctgcctggatcaagcgcatcaagga 603 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 559 cctgcctgtagatgccactaagtatcccgagctggctgcctggatcaagcgcatcaagga 618 Query: 604 gctgccatactacgaggaagcgaatggctctcgtgctgcccaaatcatcgagttcatcaa 663 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 619 gctgccatactacgaggaagcgaatggctctcgtgctgcccaaatcatcgagttcatcaa 678 Query: 664 gagcaaaaagttcactattgtttaaggcattttagtatagacaaaaataaataagaacaa 723 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 679 gagcaaaaagttcactattgtttaaggcattttagtatagacaaaaataaataagaacaa 738 Query: 724 caattatcataacg 737 |||||||||||||| Sbjct: 739 caattatcataacg 752 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 19,003 Number of Sequences: 18737 Number of extensions: 19003 Number of successful extensions: 483 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 482 Number of HSP's gapped (non-prelim): 1 length of query: 750 length of database: 41,270,998 effective HSP length: 17 effective length of query: 733 effective length of database: 40,952,469 effective search space: 30018159777 effective search space used: 30018159777 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI109965|AI109965 GH09377.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH09377 5 similar to CG3239: FBan0003239 'endopeptidase' located on: X 5A1-5A1;: 04/10/2001, mRNA sequence. (839 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG3239-RB feature: mRNA loc=X:complement(5234654..5236386,523660... 1657 0.0 CG3239-RA feature: mRNA loc=X:complement(5234654..5236386,523645... 1657 0.0 >CG3239-RB feature: mRNA loc=X:complement(5234654..5236386, 5236606..5236663);ID=FBan0003239;gene_id=FBgn0029769;gene _sym=CG3239;sym=CG3239;scaffold=AE003434;len=1791 Length = 1791 Score = 1657 bits (836), Expect = 0.0 Identities = 838/839 (99%) Strand = Plus / Plus Query: 1 cagtccagacagatcctcagtcatcctgctgcatggttggtagagaagaatcatcccagg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 678 cagtccagacagatcctcagtcatcctgctgcatggttggtagagaagaatcatcccagg 737 Query: 61 ctcaaggaggagccagtgctgcaggacattttcgcggagctgaagcagcgctttggccaa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 738 ctcaaggaggagccagtgctgcaggacattttcgcggagctgaagcagcgctttggccaa 797 Query: 121 aagcttctggcgaacaggaataactttactcgcagcacacagcactttcttttgggcaaa 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 798 aagcttctggcgaacaggaataactttactcgcagcacacagcactttcttttgggcaaa 857 Query: 181 ttgaaaaggatgcggctgcgattgagcatcctgcccagaaattcttcggcccaatccatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 858 ttgaaaaggatgcggctgcgattgagcatcctgcccagaaattcttcggcccaatccatg 917 Query: 241 gtgcgacgcatcgaaaggcactacagggatgttcacatgaatgctagcgattattttgga 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 918 gtgcgacgcatcgaaaggcactacagggatgttcacatgaatgctagcgattattttgga 977 Query: 301 aatctacatatcggccttaatcactccagatcccacaagaagtacgcccaactatgggcc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 978 aatctacatatcggccttaatcactccagatcccacaagaagtacgcccaactatgggcc 1037 Query: 361 atagtcttcggccgccagttgattccaagccgaatatccaagagcgatttgtatcccacc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1038 atagtcttcggccgccagttgattccaagccgaatatccaagagcgatttgtatcccacc 1097 Query: 421 caagtgcgtgggtatggcacctatgcctctgcgttctacatagtcaaacagaatatgcta 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1098 caagtgcgtgggtatggcacctatgcctctgcgttctacatagtcaaacagaatatgcta 1157 Query: 481 attgtgccactatcgctcctggaaccgccgttctacacacatggccagccgtcgatactt 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1158 attgtgccactatcgctcctggaaccgccgttctacacacatggccagccgtcgatactt 1217 Query: 541 acctacagtgcactgggcttcatcctgggccacgagctctcgcacggctttgattccgag 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1218 acctacagtgcactgggcttcatcctgggccacgagctctcgcacggctttgattccgag 1277 Query: 601 ggcatgaccttctcctcgcacggagtgggaagtagcgccgtggacagggagcttgatagg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1278 ggcatgaccttctcctcgcacggagtgggaagtagcgccgtggacagggagcttgatagg 1337 Query: 661 aatccgcgattccagcaggagcttggctgtttgcgcagaagattcgggaggaagcggtat 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1338 aatccgcgattccagcaggagcttggctgtttgcgcagaagattcgggaggaagcggtat 1397 Query: 721 gaaaagttcgcggacgccagtngcttggaactggcctattccgcctactttgacaccgca 780 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 1398 gaaaagttcgcggacgccagtggcttggaactggcctattccgcctactttgacaccgca 1457 Query: 781 caaacggatcataagcggaatcgaagtgccgaggagttggtcactcagaagcagcagtt 839 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1458 caaacggatcataagcggaatcgaagtgccgaggagttggtcactcagaagcagcagtt 1516 >CG3239-RA feature: mRNA loc=X:complement(5234654..5236386, 5236451..5236644);ID=FBan0003239;gene_id=FBgn0029769;gene _sym=CG3239;sym=CG3239;scaffold=AE003434;len=1927 Length = 1927 Score = 1657 bits (836), Expect = 0.0 Identities = 838/839 (99%) Strand = Plus / Plus Query: 1 cagtccagacagatcctcagtcatcctgctgcatggttggtagagaagaatcatcccagg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 814 cagtccagacagatcctcagtcatcctgctgcatggttggtagagaagaatcatcccagg 873 Query: 61 ctcaaggaggagccagtgctgcaggacattttcgcggagctgaagcagcgctttggccaa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 874 ctcaaggaggagccagtgctgcaggacattttcgcggagctgaagcagcgctttggccaa 933 Query: 121 aagcttctggcgaacaggaataactttactcgcagcacacagcactttcttttgggcaaa 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 934 aagcttctggcgaacaggaataactttactcgcagcacacagcactttcttttgggcaaa 993 Query: 181 ttgaaaaggatgcggctgcgattgagcatcctgcccagaaattcttcggcccaatccatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 994 ttgaaaaggatgcggctgcgattgagcatcctgcccagaaattcttcggcccaatccatg 1053 Query: 241 gtgcgacgcatcgaaaggcactacagggatgttcacatgaatgctagcgattattttgga 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1054 gtgcgacgcatcgaaaggcactacagggatgttcacatgaatgctagcgattattttgga 1113 Query: 301 aatctacatatcggccttaatcactccagatcccacaagaagtacgcccaactatgggcc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1114 aatctacatatcggccttaatcactccagatcccacaagaagtacgcccaactatgggcc 1173 Query: 361 atagtcttcggccgccagttgattccaagccgaatatccaagagcgatttgtatcccacc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1174 atagtcttcggccgccagttgattccaagccgaatatccaagagcgatttgtatcccacc 1233 Query: 421 caagtgcgtgggtatggcacctatgcctctgcgttctacatagtcaaacagaatatgcta 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1234 caagtgcgtgggtatggcacctatgcctctgcgttctacatagtcaaacagaatatgcta 1293 Query: 481 attgtgccactatcgctcctggaaccgccgttctacacacatggccagccgtcgatactt 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1294 attgtgccactatcgctcctggaaccgccgttctacacacatggccagccgtcgatactt 1353 Query: 541 acctacagtgcactgggcttcatcctgggccacgagctctcgcacggctttgattccgag 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1354 acctacagtgcactgggcttcatcctgggccacgagctctcgcacggctttgattccgag 1413 Query: 601 ggcatgaccttctcctcgcacggagtgggaagtagcgccgtggacagggagcttgatagg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1414 ggcatgaccttctcctcgcacggagtgggaagtagcgccgtggacagggagcttgatagg 1473 Query: 661 aatccgcgattccagcaggagcttggctgtttgcgcagaagattcgggaggaagcggtat 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1474 aatccgcgattccagcaggagcttggctgtttgcgcagaagattcgggaggaagcggtat 1533 Query: 721 gaaaagttcgcggacgccagtngcttggaactggcctattccgcctactttgacaccgca 780 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 1534 gaaaagttcgcggacgccagtggcttggaactggcctattccgcctactttgacaccgca 1593 Query: 781 caaacggatcataagcggaatcgaagtgccgaggagttggtcactcagaagcagcagtt 839 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1594 caaacggatcataagcggaatcgaagtgccgaggagttggtcactcagaagcagcagtt 1652 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 20,004 Number of Sequences: 18737 Number of extensions: 20004 Number of successful extensions: 374 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 372 Number of HSP's gapped (non-prelim): 2 length of query: 839 length of database: 41,270,998 effective HSP length: 17 effective length of query: 822 effective length of database: 40,952,469 effective search space: 33662929518 effective search space used: 33662929518 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI113363|AI113363 GH06743.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH06743 5prime similar to M21017: D.melanogaster 18S, 5.8S 2S and 28S rRNA genes, complete, and 18S rRNA gene, 5' end, clone pDm238, mRNA sequence. (691 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,976 Number of Sequences: 18737 Number of extensions: 11976 Number of successful extensions: 195 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 195 Number of HSP's gapped (non-prelim): 0 length of query: 691 length of database: 41,270,998 effective HSP length: 17 effective length of query: 674 effective length of database: 40,952,469 effective search space: 27601964106 effective search space used: 27601964106 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI113593|AI113593 GH09955.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH09955 5, mRNA sequence. (970 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 45,757 Number of Sequences: 18737 Number of extensions: 45757 Number of successful extensions: 8910 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8910 Number of HSP's gapped (non-prelim): 0 length of query: 970 length of database: 41,270,998 effective HSP length: 18 effective length of query: 952 effective length of database: 40,933,732 effective search space: 38968912864 effective search space used: 38968912864 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI113949|AI113949 GH10483.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH10483 5 similar to CG1598: FBan0001598 'enzyme' located on: 2R 43D4-43D5;: 04/10/2001, mRNA sequence. (689 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG1598-RA feature: mRNA loc=2R:complement(2599131..2599613,25996... 1017 0.0 >CG1598-RA feature: mRNA loc=2R:complement(2599131..2599613,2599673..2600113, 2600198..2600315, 2600379..2600597);ID=FBan0001598;gene_id=FBgn0033191;gene _sym=CG1598;sym=CG1598;scaffold=AE003840;len=1261 Length = 1261 Score = 1017 bits (513), Expect = 0.0 Identities = 513/513 (100%) Strand = Plus / Plus Query: 1 cgcgttatcacccaggtcaacgagcagttcaagaacccagatcaaactacattcgtctgc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 740 cgcgttatcacccaggtcaacgagcagttcaagaacccagatcaaactacattcgtctgc 799 Query: 61 gtgtgcatagcagagttcttctcgctgtacgagacggaacgacttgtgcaagagctaacc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 800 gtgtgcatagcagagttcttctcgctgtacgagacggaacgacttgtgcaagagctaacc 859 Query: 121 aagtgcggcatcgacgtccacaacatcattgtaaaccaactgctgtttctgcagaactcg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 860 aagtgcggcatcgacgtccacaacatcattgtaaaccaactgctgtttctgcagaactcg 919 Query: 181 cacgactcgtgcagcatgtgcgcctcccgcttcaagattcaggagaagtacctggaccag 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 920 cacgactcgtgcagcatgtgcgcctcccgcttcaagattcaggagaagtacctggaccag 979 Query: 241 attgccgacctgtatgaagacttccacgtaaccaagttgccgctcctcgagaaagaggtg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 980 attgccgacctgtatgaagacttccacgtaaccaagttgccgctcctcgagaaagaggtg 1039 Query: 301 cgcggtccagagagcatccgttctttctccgagaaccttatgaagccctacaaccccaag 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1040 cgcggtccagagagcatccgttctttctccgagaaccttatgaagccctacaaccccaag 1099 Query: 361 ggcgagcccaaggaataggatagcccgtccaaccctttacccatccgtttgtaagtttct 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1100 ggcgagcccaaggaataggatagcccgtccaaccctttacccatccgtttgtaagtttct 1159 Query: 421 tccttagtttgtgtgaacagaaagtgcgtaaaataaattaaagttgaggcagcgatcccc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1160 tccttagtttgtgtgaacagaaagtgcgtaaaataaattaaagttgaggcagcgatcccc 1219 Query: 481 gaagggatctgcttcgacgtgtaatgcgtagac 513 ||||||||||||||||||||||||||||||||| Sbjct: 1220 gaagggatctgcttcgacgtgtaatgcgtagac 1252 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,739 Number of Sequences: 18737 Number of extensions: 13739 Number of successful extensions: 313 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 312 Number of HSP's gapped (non-prelim): 1 length of query: 689 length of database: 41,270,998 effective HSP length: 17 effective length of query: 672 effective length of database: 40,952,469 effective search space: 27520059168 effective search space used: 27520059168 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI113976|AI113976 GH10550.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH10550 5 similar to CG4706: FBan0004706 'enzyme' located on: 3R 86D4-86D4;: 04/10/2001, mRNA sequence. (598 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Acon-RB feature: mRNA loc=2L:join(21138100..21138548,21139935..2... 1178 0.0 >Acon-RB feature: mRNA loc=2L:join(21138100..21138548,21139935..21141572, 21141639..21142142, 21142204..21142768);ID=FBan0009244;gene_id=FBgn0010100;ge ne_sym=Acon;sym=CG9244;scaffold=AE003669;len=3156 Length = 3156 Score = 1178 bits (594), Expect = 0.0 Identities = 597/598 (99%) Strand = Plus / Plus Query: 1 atcggagctaccacctctctgttccccttcaaccagcgcatggctgattacctgaaatcg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1305 atcggagctaccacctctctgttccccttcaaccagcgcatggctgattacctgaaatcg 1364 Query: 61 acaggccgtgctggcattgcctccgaagcccagaagtaccaggccaagattctgtccgct 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1365 acaggccgtgctggcattgcctccgaagcccagaagtaccaggccaagattctgtccgct 1424 Query: 121 gacaagaactgcgagtacgatgagctgattgaaatcaacctagacaccctggagccccat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1425 gacaagaactgcgagtacgatgagctgattgaaatcaacctagacaccctggagccccat 1484 Query: 181 gttaacggaccattcactcccgatttgggccatcccatcagcaagctaggcgagaactcg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1485 gttaacggaccattcactcccgatttgggccatcccatcagcaagctaggcgagaactcg 1544 Query: 241 aagaagaacgggtaccctatggacatccgtgtaggtcttattggctcttgcaccaactct 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1545 aagaagaacgggtaccctatggacatccgtgtaggtcttattggctcttgcaccaactct 1604 Query: 301 tcgtatgaggacatgggtcgctgcgccagcatcgccaaggatgccatgagccatggcctc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1605 tcgtatgaggacatgggtcgctgcgccagcatcgccaaggatgccatgagccatggcctc 1664 Query: 361 aagtcgaagattcctttcaatgtgactcccggatcagagcagatccgtgccaccatcgag 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1665 aagtcgaagattcctttcaatgtgactcccggatcagagcagatccgtgccaccatcgag 1724 Query: 421 cgcgacggcatctctgaggtgttcgacaagttcggcggtaccgttctggccaacgcttgc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1725 cgcgacggcatctctgaggtgttcgacaagttcggcggtaccgttctggccaacgcttgc 1784 Query: 481 ggtccctgcattggacagtgggatcgtaaggacgttaagaagggcgacaagaacaccatt 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1785 ggtccctgcattggacagtgggatcgtaaggacgttaagaagggcgacaagaacaccatt 1844 Query: 541 gtcaccttctacaaccgaaactttactggcaggaacgacgctaacccggccacccatt 598 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1845 gtcacctcctacaaccgaaactttactggcaggaacgacgctaacccggccacccatt 1902 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,335 Number of Sequences: 18737 Number of extensions: 12335 Number of successful extensions: 285 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 284 Number of HSP's gapped (non-prelim): 1 length of query: 598 length of database: 41,270,998 effective HSP length: 17 effective length of query: 581 effective length of database: 40,952,469 effective search space: 23793384489 effective search space used: 23793384489 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI114205|AI114205 GH10940.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH10940 5 similar to CG18662: FBan0018662 located on: 2L 29F7-29F7;: 04/10/2001, mRNA sequence. (763 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG18662-RA feature: mRNA loc=2L:join(8972911..8973014,8973086..8... 1126 0.0 >CG18662-RA feature: mRNA loc=2L:join(8972911..8973014,8973086..8973250, 8973308..8973668);ID=FBan0018662;gene_id=FBgn0040963;gen e_sym=CG18662;sym=CG18662;scaffold=AE003623;len=630 Length = 630 Score = 1126 bits (568), Expect = 0.0 Identities = 574/576 (99%) Strand = Plus / Minus Query: 107 acgtatagtcaaatttaattcaaatttacgtaagcaatgcgcacacagtcgtaagaccaa 166 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 625 acgtatagtcaaatttaattcaaatttacgtaagcaatgcgcacacagtcgtaagaccaa 566 Query: 167 aatttgtaaaaaatatgtcgagccaatagtgagtgtttcttaaaacagaaatattggtca 226 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 565 aatttgtaaaaaatatgtcgagccaatagtgagtgtttcttaaaacagaaatattggtca 506 Query: 227 gtacacatccttctagggctccattccaccagattcggcatcgatcttgtgatcggtata 286 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 505 gtacacatccttctagggctccattccaccagattcggcatcgatcttgtgatcggtata 446 Query: 287 gatgggttgcaatatctcacgggcagcttcgtgatcagcttttcccagggcctgtgatct 346 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 445 gatgggttgcaatatctcacgggcagcttcgtgatcagcttttcccagggcctgtgatct 386 Query: 347 tccatacagcttgatgtacttcttttccttgtcgtgaaccaagtaaccacctccaagacc 406 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 385 tccatacagcttgatgtacttcttttccttgtcgtgaaccaagtaaccacctccaagacc 326 Query: 407 ctgggtgcacaagcccatcgactcagcctcctttttcaactcatcgtatacatcaagatg 466 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 325 ctgggtgcacaagcccatcgactcagcctcctttttcaactcatcgtatacatcaagatg 266 Query: 467 gtacttggccttggaaaggctacgaatcacctgcttggcgctacccatttccccatggat 526 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 265 gtacttggccttggaaaggctacgaatcacctgcttggcgctacccatttccccatggat 206 Query: 527 ataaacgtgggccatcatgtactttgattttccactttccaccttggcaacaggaaaagc 586 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 205 ataaacgtgggccatcatgtactttgattttccactttccaccttggcaacaggaaaagc 146 Query: 587 gactagacttcgcattggcttctcacaataaagtcgagccgcttgcatcattggccgcca 646 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 145 gactagacttcgcattggcttctcacaataaagtcgagccgcttgcatcattggccgcca 86 Query: 647 aacgggtttaagaaattatccagcaaactacatgtc 682 ||||||||||||||||| ||||||||||| |||||| Sbjct: 85 aacgggtttaagaaattttccagcaaactccatgtc 50 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,411 Number of Sequences: 18737 Number of extensions: 15411 Number of successful extensions: 432 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 431 Number of HSP's gapped (non-prelim): 1 length of query: 763 length of database: 41,270,998 effective HSP length: 17 effective length of query: 746 effective length of database: 40,952,469 effective search space: 30550541874 effective search space used: 30550541874 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI114218|AI114218 GH10978.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH10978 3prime, mRNA sequence. (553 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG4169-RA feature: mRNA loc=3L:join(16533003..16533323,16533468.... 1088 0.0 >CG4169-RA feature: mRNA loc=3L:join(16533003..16533323,16533468..16533601, 16533658..16533961, 16534064..16534995);ID=FBan0004169;gene_id=FBgn0036642;g ene_sym=CG4169;sym=CG4169;scaffold=AE003526;len=1691 Length = 1691 Score = 1088 bits (549), Expect = 0.0 Identities = 552/553 (99%) Strand = Plus / Plus Query: 1 ctgtatgaatgtaactgccaaggaaaaacatttgttaaattttttcacttagtcaaatta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ctgtatgaatgtaactgccaaggaaaaacatttgttaaattttttcacttagtcaaatta 60 Query: 61 ttcaagatcacgatatttcgaaaatcccgtgacttaccataagtcacagctggtactcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ttcaagatcacgatatttcgaaaatcccgtgacttaccataagtcacagctggtactcgg 120 Query: 121 tgtgaccattttggagcgcattgaaaaactagggcttagttgaaccccgtgcgacggcca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tgtgaccattttggagcgcattgaaaaactagggcttagttgaaccccgtgcgacggcca 180 Query: 181 cactagcgcgaacgaccgtaaaaattttcgctctgcgaatatttgtaaaaaattgcttag 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 cactagcgcgaacgaccgtaaaaattttcgctctgcgaatatttgtaaaaaattgcttag 240 Query: 241 aaagcaaatagaagaaattgtagcataatccacgccatggcctgtaacgctagcaagacg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 aaagcaaatagaagaaattgtagcataatccacgccatggcctgtaacgctagcaagacg 300 Query: 301 tcgctcctgcgcgccatcgccaaacgaggctacgccacctgcccgcgtcccgtcggcgac 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 tcgctcctgcgcgccatcgccaaacgaggctacgccacctgcccgcgtcccgtcggcgac 360 Query: 361 ctgtccgccgtgaacgtcaaggtgctggagaacaaactggtggtagccaccgccgatgca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 ctgtccgccgtgaacgtcaaggtgctggagaacaaactggtggtagccaccgccgatgca 420 Query: 421 actcttcccgtttcgcgcgtctctttggtgctgggagccggatcacgaaacgagtcctac 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 actcttcccgtttcgcgcgtctctttggtgctgggagccggatcacgaaacgagtcctac 480 Query: 481 gacatccagggagcctcgcacctgcttcgtttggccggaggactgatcacccagaactcg 540 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 481 gacatccagggagcctcgcacctgcttcgtttggccggaggactgagcacccagaactcg 540 Query: 541 accgccttcgcca 553 ||||||||||||| Sbjct: 541 accgccttcgcca 553 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,290 Number of Sequences: 18737 Number of extensions: 12290 Number of successful extensions: 282 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 281 Number of HSP's gapped (non-prelim): 1 length of query: 553 length of database: 41,270,998 effective HSP length: 17 effective length of query: 536 effective length of database: 40,952,469 effective search space: 21950523384 effective search space used: 21950523384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI114385|AI114385 GH11240.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH11240 5prime, mRNA sequence. (573 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG11089-RA feature: mRNA loc=3R:join(20693447..20693513,20695436... 1136 0.0 >CG11089-RA feature: mRNA loc=3R:join(20693447..20693513,20695436..20695498, 20695556..20696628,20696692..20697125, 20697185..20697311, 20697373..20697857);ID=FBan0011089;gene_id=FBgn0039241;g ene_sym=CG11089;sym=CG11089;scaffold=AE003749;len=2249 Length = 2249 Score = 1136 bits (573), Expect = 0.0 Identities = 573/573 (100%) Strand = Plus / Plus Query: 1 aattttgtgtggttccactatttccctttaaaactctaccattatttttcgatttttgcc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 13 aattttgtgtggttccactatttccctttaaaactctaccattatttttcgatttttgcc 72 Query: 61 cagcggttcagacgcaattagagaaaccaatcatcaaccatgagctccagcaagattgct 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 73 cagcggttcagacgcaattagagaaaccaatcatcaaccatgagctccagcaagattgct 132 Query: 121 cttctcagtgtgtcggacaagacgggcctgctcgacttgggcaagagtttggtggcactg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 133 cttctcagtgtgtcggacaagacgggcctgctcgacttgggcaagagtttggtggcactg 192 Query: 181 ggctttgacctggttgccagtggaggcactgcaactagcttgcgtggcgctggcctgaag 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 193 ggctttgacctggttgccagtggaggcactgcaactagcttgcgtggcgctggcctgaag 252 Query: 241 gtgagggatgtctcggagattacaggagcacctgagatgctcggtggacgtgtgaagacg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 253 gtgagggatgtctcggagattacaggagcacctgagatgctcggtggacgtgtgaagacg 312 Query: 301 ctgcacccggctgtgcatgctggaatcctttcccgcaccaccgactctgatctggctgac 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 313 ctgcacccggctgtgcatgctggaatcctttcccgcaccaccgactctgatctggctgac 372 Query: 361 atgcgcaagcagggcttcgatcttatccagctggtggtctgcaatctgtaccccttcgcc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 373 atgcgcaagcagggcttcgatcttatccagctggtggtctgcaatctgtaccccttcgcc 432 Query: 421 agcaccgtagcgaagcctgatgttacgctggccgatgccgtggagaacatcgatattgga 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 433 agcaccgtagcgaagcctgatgttacgctggccgatgccgtggagaacatcgatattgga 492 Query: 481 ggcgttactctgctccgggcggctgctaagaatcaccagcgagtcacagttgtctgcgaa 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 493 ggcgttactctgctccgggcggctgctaagaatcaccagcgagtcacagttgtctgcgaa 552 Query: 541 gcagtggattatgatcgtgtcctgtcggagttg 573 ||||||||||||||||||||||||||||||||| Sbjct: 553 gcagtggattatgatcgtgtcctgtcggagttg 585 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,499 Number of Sequences: 18737 Number of extensions: 13499 Number of successful extensions: 302 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 301 Number of HSP's gapped (non-prelim): 1 length of query: 573 length of database: 41,270,998 effective HSP length: 17 effective length of query: 556 effective length of database: 40,952,469 effective search space: 22769572764 effective search space used: 22769572764 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI134036|AI134036 GH11373.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH11373 5prime, mRNA sequence. (617 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31538-RA feature: mRNA loc=3R:complement(1101391..1103554);ID=... 1223 0.0 >CG31538-RA feature: mRNA loc=3R:complement(1101391..1103554);ID=FBan0031538;gene_ id=FBgn0051538;gene_sym=CG31538;sym=CG31538;scaffold=AE0 03603;len=2164 Length = 2164 Score = 1223 bits (617), Expect = 0.0 Identities = 617/617 (100%) Strand = Plus / Plus Query: 1 ctctccaaaatagaaaattcgaatttatttattcagtgttttgttggtcttacgagtccg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 93 ctctccaaaatagaaaattcgaatttatttattcagtgttttgttggtcttacgagtccg 152 Query: 61 tgaaatcgagttctttagtccgtgaagaaacgtgcttcgttttcgcaggtttttgctaaa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 153 tgaaatcgagttctttagtccgtgaagaaacgtgcttcgttttcgcaggtttttgctaaa 212 Query: 121 ttgttcgtgtatccattggttcacattatgagtactcatcagtatagcctggggaggctg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 213 ttgttcgtgtatccattggttcacattatgagtactcatcagtatagcctggggaggctg 272 Query: 181 gcccgccgaggcttcagcctgcggatgaatccgctggccggcacactgcaaaggctttac 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 273 gcccgccgaggcttcagcctgcggatgaatccgctggccggcacactgcaaaggctttac 332 Query: 241 cacacccgtagcaggccatgtgtggcccagagtgtgagccaggtgggtgaacggtccaag 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 333 cacacccgtagcaggccatgtgtggcccagagtgtgagccaggtgggtgaacggtccaag 392 Query: 301 ccaacgttgcagccctacgacttcgaccgaagccgggtgcgtaaaattgccggcgagagg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 393 ccaacgttgcagccctacgacttcgaccgaagccgggtgcgtaaaattgccggcgagagg 452 Query: 361 aagacgctggtcgaccaggtgcggggcatgagcacaagcctgggacatgccaagttggtg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 453 aagacgctggtcgaccaggtgcggggcatgagcacaagcctgggacatgccaagttggtg 512 Query: 421 ccccaaaagatgtacggcaagacgaggctgttctcctccggaagcaccctctacagtcgc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 513 ccccaaaagatgtacggcaagacgaggctgttctcctccggaagcaccctctacagtcgc 572 Query: 481 ttgcagcatctggaacagcagaacgaggaatattcgagtcgagagtcccagccgacgcac 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 573 ttgcagcatctggaacagcagaacgaggaatattcgagtcgagagtcccagccgacgcac 632 Query: 541 accacagcctcattgtcggccacccagcagaggtacaatcaggcggcaggattcggcaag 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 633 accacagcctcattgtcggccacccagcagaggtacaatcaggcggcaggattcggcaag 692 Query: 601 ggcatggccatacagac 617 ||||||||||||||||| Sbjct: 693 ggcatggccatacagac 709 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,569 Number of Sequences: 18737 Number of extensions: 13569 Number of successful extensions: 218 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 217 Number of HSP's gapped (non-prelim): 1 length of query: 617 length of database: 41,270,998 effective HSP length: 17 effective length of query: 600 effective length of database: 40,952,469 effective search space: 24571481400 effective search space used: 24571481400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI134342|AI134342 GH11778.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH11778 5prime similar to X52286: Cat FBgn0000261 PID:g7690 SWISS-PROT:P17336, mRNA sequence. (587 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Cat-RA feature: mRNA loc=3L:join(18771485..18771721,18775217..18... 793 0.0 >Cat-RA feature: mRNA loc=3L:join(18771485..18771721,18775217..18776137, 18776235..18777073);ID=FBan0006871;gene_id=FBgn0000261;ge ne_sym=Cat;sym=CG6871;scaffold=AE003519;len=1997 Length = 1997 Score = 793 bits (400), Expect = 0.0 Identities = 403/404 (99%) Strand = Plus / Minus Query: 20 ggaagttctcaatcttcaccttgtacgggcagttcaccgggatctgcgagtagttcggtc 79 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 1333 ggaagttctcaatcttcaccttgtacgggcagttcaccgggatctgcaagtagttcggtc 1274 Query: 80 ccaggcgatggcgatgggtgtccgagtaggagaacagacgaccatgcagcatcttgtccg 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1273 ccaggcgatggcgatgggtgtccgagtaggagaacagacgaccatgcagcatcttgtccg 1214 Query: 140 gagagggctcaacgccgggcaccaggtgagcgggactgaaggcgatctgctccacctcag 199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1213 gagagggctcaacgccgggcaccaggtgagcgggactgaaggcgatctgctccacctcag 1154 Query: 200 caaagtagttcttgggattgcgatccagcaccattttgcccacaggaatcagagggtact 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1153 caaagtagttcttgggattgcgatccagcaccattttgcccacaggaatcagagggtact 1094 Query: 260 ccttctgcgaccagaccttggtgacatcgaaggggttgtacttgaacttcttggcctgct 319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1093 ccttctgcgaccagaccttggtgacatcgaaggggttgtacttgaacttcttggcctgct 1034 Query: 320 cgtaggtcatgacctgaatgtacatcgtccaactggggaacttgcaggtcttgatcctgt 379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1033 cgtaggtcatgacctgaatgtacatcgtccaactggggaacttgcaggtcttgatcctgt 974 Query: 380 tgtacagatcgcgaatgctgtaatccggatcagtgctagccaac 423 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 973 tgtacagatcgcgaatgctgtaatccggatcagtgctagccaac 930 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,138 Number of Sequences: 18737 Number of extensions: 13138 Number of successful extensions: 353 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 351 Number of HSP's gapped (non-prelim): 2 length of query: 587 length of database: 41,270,998 effective HSP length: 17 effective length of query: 570 effective length of database: 40,952,469 effective search space: 23342907330 effective search space used: 23342907330 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI134428|AI134428 GH11893.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH11893 5prime similar to M21017: D.melanogaster 18S, 5.8S 2S and 28S rRNA genes, complete, and 18S rRNA gene, 5' end, clone pDm238, mRNA sequence. (562 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6925 Number of Sequences: 18737 Number of extensions: 6925 Number of successful extensions: 134 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 134 Number of HSP's gapped (non-prelim): 0 length of query: 562 length of database: 41,270,998 effective HSP length: 17 effective length of query: 545 effective length of database: 40,952,469 effective search space: 22319095605 effective search space used: 22319095605 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI134984|AI134984 GH12586.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH12586 5 similar to CG4461: FBan0004461 'chaperone' located on: 3L 67B1-67B1;: 04/10/2001, mRNA sequence. (651 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG4461-RA feature: mRNA loc=3L:9334139..9334979;ID=FBan0004461;g... 1285 0.0 >CG4461-RA feature: mRNA loc=3L:9334139..9334979;ID=FBan0004461;gene_id=FBgn00359 82;gene_sym=CG4461;sym=CG4461;scaffold=AE003552;len=841 Length = 841 Score = 1285 bits (648), Expect = 0.0 Identities = 650/651 (99%) Strand = Plus / Plus Query: 1 actcgtacataagcgaatcgctgccctaatcccggcgagaaatgtctctggtgcctacca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 15 actcgtacataagcgaatcgctgccctaatcccggcgagaaatgtctctggtgcctacca 74 Query: 61 catatcgcgatttgtcgcgcgaatttgatcgactccgtccgctctaccatccgccgtatg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 75 catatcgcgatttgtcgcgcgaatttgatcgactccgtccgctctaccatccgccgtatg 134 Query: 121 atttccagctatatccgtatctgtgggacgattcgcgtctctggtggccatcgcctcaca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 135 atttccagctatatccgtatctgtgggacgattcgcgtctctggtggccatcgcctcaca 194 Query: 181 ccagcagaagtgacctactccgacctctggatgagctggtgtcgcgtcgagtgcgcaacc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 195 ccagcagaagtgacctactccgacctctggatgagctggtgtcgcgtcgagtgcgcaacc 254 Query: 241 agttgatccaatcgacgccgtatgagtgggcgcatccaatgaggtgggacaactactatt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 255 agttgatccaatcgacgccgtatgagtgggcgcatccaatgaggtgggacaactactatt 314 Query: 301 ccggtgagcgtgtccatgtggatgagaagggatttcggattgacatcgatgtgcgacaat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 315 ccggtgagcgtgtccatgtggatgagaagggatttcggattgacatcgatgtgcgacaat 374 Query: 361 ttcatccccacgacattgtggtcaaaaccaatgacgactatgtcatcgtccagggaaatc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 375 ttcatccccacgacattgtggtcaaaaccaatgacgactatgtcatcgtccagggaaatc 434 Query: 421 acaatcgtcgcgacgagggttccaatggcctggtggagcggcactttgtgaggaagtacc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 435 acaatcgtcgcgacgagggttccaatggcctggtggagcggcactttgtgaggaagtacc 494 Query: 481 ttctgccccgcggatacaatgccaatgaggtaatctcggacatatccagcgatggcatcc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 495 ttctgccccgcggatacaatgccaatgaggtaatctcggacatatccagcgatggcatcc 554 Query: 541 tcaccatcaaggctccaccaccgncgccagccaagtactacacgcccggagagagattgg 600 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 555 tcaccatcaaggctccaccaccgccgccagccaagtactacacgcccggagagagattgg 614 Query: 601 tccgcgttcatgaaaccggaaagctggccctgccctggaaatagtggacca 651 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 615 tccgcgttcatgaaaccggaaagctggccctgccctggaaatagtggacca 665 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,656 Number of Sequences: 18737 Number of extensions: 14656 Number of successful extensions: 296 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 295 Number of HSP's gapped (non-prelim): 1 length of query: 651 length of database: 41,270,998 effective HSP length: 17 effective length of query: 634 effective length of database: 40,952,469 effective search space: 25963865346 effective search space used: 25963865346 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI238003|AI238003 GH13953.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH13953 5 similar to CG10252: FBan0010252 GO:[] located on: 3R 95B2-95B3;: 08/12/2002, mRNA sequence. (811 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG10252-RA feature: mRNA loc=3R:complement(19511593..19511924,19... 1578 0.0 >CG10252-RA feature: mRNA loc=3R:complement(19511593..19511924,19511996..19512182, 19512243..19512461, 19512523..19512657);ID=FBan0010252;gene_id=FBgn0039104;g ene_sym=CG10252;sym=CG10252;scaffold=AE003744;len=873 Length = 873 Score = 1578 bits (796), Expect = 0.0 Identities = 802/804 (99%) Strand = Plus / Plus Query: 1 ccaacacctaatattgggttctaaattttcaaaatagattttctttctaatattgcacaa 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 46 ccaacacctaatattgggttctaaattttcaaaatagattttctttctaatattgcacaa 105 Query: 61 aactaacaaaaatggcggtgcgaccttttggccctggacccggcgtttacatgctgcccc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 106 aactaacaaaaatggcggtgcgaccttttggccctggacccggcgtttacatgctgcccc 165 Query: 121 ccactgtgggctatgataagcatgacaaccgcaaacagcggttgccgcagtactctttcg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 166 ccactgtgggctatgataagcatgacaaccgcaaacagcggttgccgcagtactctttcg 225 Query: 181 gcatgcgcacccgtgctcctggtgaggatctgggtcctggtccaggggcctacaaggtgg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 226 gcatgcgcacccgtgctcctggtgaggatctgggtcctggtccaggggcctacaaggtgg 285 Query: 241 acaagttgactcgctatggcacgagcaagggtttggagttctcgatggcgcccagaacca 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 286 acaagttgactcgctatggcacgagcaagggtttggagttctcgatggcgcccagaacca 345 Query: 301 atgtcatcgataagcgaagcagtcccggtccgggagcacacgatgttcataataggccat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 346 atgtcatcgataagcgaagcagtcccggtccgggagcacacgatgttcataataggccat 405 Query: 361 tctttaagggggttaatgctccttcgtattcgatgggcctacgaacggactttaacttca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 406 tctttaagggggttaatgctccttcgtattcgatgggcctacgaacggactttaacttca 465 Query: 421 agaaggatggtcccggtcccaatgcctacaagtacgaggtcaatgccgttcgtcctggag 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 466 agaaggatggtcccggtcccaatgcctacaagtacgaggtcaatgccgttcgtcctggag 525 Query: 481 tcccgagctatagcatgggactacaaacaaagattttgaacaagacgaattctccgggtc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 526 tcccgagctatagcatgggactacaaacaaagattttgaacaagacgaattctccgggtc 585 Query: 541 cggctgcatatggcggtggtgatatcaatgtcaaactgacacgtgctccgatatactcga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 586 cggctgcatatggcggtggtgatatcaatgtcaaactgacacgtgctccgatatactcga 645 Query: 601 tgcagccgcgcaccactattccgggcgagaatgtcggacctggacccaactactacgacc 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 646 tgcagccgcgcaccactattccgggcgagaatgtcggacctggacccaactactacgacc 705 Query: 661 tcatgtactatcgtcctggcaagagtggaccgggctactcctttggtgtgcgccaccacc 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 706 tcatgtactatcgtcctggcaagagtggaccgggctactcctttggtgtgcgccaccacc 765 Query: 721 agttcgctccgcctatgatagttagatgtgacaatatgtagaccaagtgcaatattgtga 780 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 766 agttcgctccgcctatgatagttagatgtgacaatatgtagaccaagtgcaatattggaa 825 Query: 781 gaaatatatgctaaaatttttgtg 804 |||||||||||||||||||||||| Sbjct: 826 gaaatatatgctaaaatttttgtg 849 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,492 Number of Sequences: 18737 Number of extensions: 16492 Number of successful extensions: 319 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 318 Number of HSP's gapped (non-prelim): 1 length of query: 811 length of database: 41,270,998 effective HSP length: 17 effective length of query: 794 effective length of database: 40,952,469 effective search space: 32516260386 effective search space used: 32516260386 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI238065|AI238065 GH14051.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH14051 5 similar to CG9699: FBan0009699 'cytoskeletal structural protein' located on: X 15A1-15A1;: 04/10/2001, mRNA sequence. (593 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG9699-RG feature: mRNA loc=X:complement(16415231..16416431,1641... 1049 0.0 CG9699-RF feature: mRNA loc=X:complement(16415231..16416431,1641... 1049 0.0 CG9699-RE feature: mRNA loc=X:complement(16415231..16416431,1641... 1049 0.0 CG9699-RD feature: mRNA loc=X:complement(16415231..16416431,1641... 1049 0.0 CG9699-RC feature: mRNA loc=X:complement(16415231..16416431,1641... 1049 0.0 CG9699-RB feature: mRNA loc=X:complement(16415231..16416431,1641... 1049 0.0 CG9699-RA feature: mRNA loc=X:complement(16415231..16416431,1641... 1049 0.0 >CG9699-RG feature: mRNA loc=X:complement(16415231..16416431,16416528..16416930, 16417330..16417789, 16418180..16418534);ID=FBan0009699;gene_id=FBgn0030772;ge ne_sym=CG9699;sym=CG9699;scaffold=AE003503;len=2419 Length = 2419 Score = 1049 bits (529), Expect = 0.0 Identities = 529/529 (100%) Strand = Plus / Minus Query: 65 ttaaaaagtctgtgctagcttataaacaaagtcgatttggttgcagctgctccaggattt 124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1622 ttaaaaagtctgtgctagcttataaacaaagtcgatttggttgcagctgctccaggattt 1563 Query: 125 ctctgggtcaccatataagtcctatatagtaggtagatgcatatatggcggtgcaaaatt 184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1562 ctctgggtcaccatataagtcctatatagtaggtagatgcatatatggcggtgcaaaatt 1503 Query: 185 gaacacgttcccatttccgttccctagacgtcgatcacgctgtcattcttcttcatctcc 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1502 gaacacgttcccatttccgttccctagacgtcgatcacgctgtcattcttcttcatctcc 1443 Query: 245 atgagatgggtctgcttgagcttctcctgcatctgggtgagcatgtcctgcatcctcctt 304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1442 atgagatgggtctgcttgagcttctcctgcatctgggtgagcatgtcctgcatcctcctt 1383 Query: 305 atctcctcgtccttttgcaggagcagcctgtccgtctccgagatggccgcgtcgaatcca 364 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1382 atctcctcgtccttttgcaggagcagcctgtccgtctccgagatggccgcgtcgaatcca 1323 Query: 365 ttggtcgagctaatcgagtcccgcttcaacttgccgcgctcacgcagcgcgtgctgcgaa 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1322 ttggtcgagctaatcgagtcccgcttcaacttgccgcgctcacgcagcgcgtgctgcgaa 1263 Query: 425 atctgcgagatgcactgcgcccggaagttctcgtagtgcacgtcctgcgtggtgtccttg 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1262 atctgcgagatgcactgcgcccggaagttctcgtagtgcacgtcctgcgtggtgtccttg 1203 Query: 485 aggtcctgcatgtgcgtggatatcaagaaggtgcgcagcttgatgaagtcgctgtgctcc 544 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1202 aggtcctgcatgtgcgtggatatcaagaaggtgcgcagcttgatgaagtcgctgtgctcc 1143 Query: 545 ggatcctccacgtttaccacgccccacggatactggcgccctcggacct 593 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1142 ggatcctccacgtttaccacgccccacggatactggcgccctcggacct 1094 >CG9699-RF feature: mRNA loc=X:complement(16415231..16416431,16416528..16416930, 16417330..16417789,16425063..16425439, 16425851..16426192);ID=FBan0009699;gene_id=FBgn0030772;ge ne_sym=CG9699;sym=CG9699;scaffold=AE003503;len=2783 Length = 2783 Score = 1049 bits (529), Expect = 0.0 Identities = 529/529 (100%) Strand = Plus / Minus Query: 65 ttaaaaagtctgtgctagcttataaacaaagtcgatttggttgcagctgctccaggattt 124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1986 ttaaaaagtctgtgctagcttataaacaaagtcgatttggttgcagctgctccaggattt 1927 Query: 125 ctctgggtcaccatataagtcctatatagtaggtagatgcatatatggcggtgcaaaatt 184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1926 ctctgggtcaccatataagtcctatatagtaggtagatgcatatatggcggtgcaaaatt 1867 Query: 185 gaacacgttcccatttccgttccctagacgtcgatcacgctgtcattcttcttcatctcc 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1866 gaacacgttcccatttccgttccctagacgtcgatcacgctgtcattcttcttcatctcc 1807 Query: 245 atgagatgggtctgcttgagcttctcctgcatctgggtgagcatgtcctgcatcctcctt 304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1806 atgagatgggtctgcttgagcttctcctgcatctgggtgagcatgtcctgcatcctcctt 1747 Query: 305 atctcctcgtccttttgcaggagcagcctgtccgtctccgagatggccgcgtcgaatcca 364 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1746 atctcctcgtccttttgcaggagcagcctgtccgtctccgagatggccgcgtcgaatcca 1687 Query: 365 ttggtcgagctaatcgagtcccgcttcaacttgccgcgctcacgcagcgcgtgctgcgaa 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1686 ttggtcgagctaatcgagtcccgcttcaacttgccgcgctcacgcagcgcgtgctgcgaa 1627 Query: 425 atctgcgagatgcactgcgcccggaagttctcgtagtgcacgtcctgcgtggtgtccttg 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1626 atctgcgagatgcactgcgcccggaagttctcgtagtgcacgtcctgcgtggtgtccttg 1567 Query: 485 aggtcctgcatgtgcgtggatatcaagaaggtgcgcagcttgatgaagtcgctgtgctcc 544 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1566 aggtcctgcatgtgcgtggatatcaagaaggtgcgcagcttgatgaagtcgctgtgctcc 1507 Query: 545 ggatcctccacgtttaccacgccccacggatactggcgccctcggacct 593 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1506 ggatcctccacgtttaccacgccccacggatactggcgccctcggacct 1458 >CG9699-RE feature: mRNA loc=X:complement(16415231..16416431,16416528..16416930, 16417330..16417789,16425063..16425391, 16425638..16426187);ID=FBan0009699;gene_id=FBgn0030772;ge ne_sym=CG9699;sym=CG9699;scaffold=AE003503;len=2943 Length = 2943 Score = 1049 bits (529), Expect = 0.0 Identities = 529/529 (100%) Strand = Plus / Minus Query: 65 ttaaaaagtctgtgctagcttataaacaaagtcgatttggttgcagctgctccaggattt 124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2146 ttaaaaagtctgtgctagcttataaacaaagtcgatttggttgcagctgctccaggattt 2087 Query: 125 ctctgggtcaccatataagtcctatatagtaggtagatgcatatatggcggtgcaaaatt 184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2086 ctctgggtcaccatataagtcctatatagtaggtagatgcatatatggcggtgcaaaatt 2027 Query: 185 gaacacgttcccatttccgttccctagacgtcgatcacgctgtcattcttcttcatctcc 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2026 gaacacgttcccatttccgttccctagacgtcgatcacgctgtcattcttcttcatctcc 1967 Query: 245 atgagatgggtctgcttgagcttctcctgcatctgggtgagcatgtcctgcatcctcctt 304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1966 atgagatgggtctgcttgagcttctcctgcatctgggtgagcatgtcctgcatcctcctt 1907 Query: 305 atctcctcgtccttttgcaggagcagcctgtccgtctccgagatggccgcgtcgaatcca 364 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1906 atctcctcgtccttttgcaggagcagcctgtccgtctccgagatggccgcgtcgaatcca 1847 Query: 365 ttggtcgagctaatcgagtcccgcttcaacttgccgcgctcacgcagcgcgtgctgcgaa 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1846 ttggtcgagctaatcgagtcccgcttcaacttgccgcgctcacgcagcgcgtgctgcgaa 1787 Query: 425 atctgcgagatgcactgcgcccggaagttctcgtagtgcacgtcctgcgtggtgtccttg 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1786 atctgcgagatgcactgcgcccggaagttctcgtagtgcacgtcctgcgtggtgtccttg 1727 Query: 485 aggtcctgcatgtgcgtggatatcaagaaggtgcgcagcttgatgaagtcgctgtgctcc 544 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1726 aggtcctgcatgtgcgtggatatcaagaaggtgcgcagcttgatgaagtcgctgtgctcc 1667 Query: 545 ggatcctccacgtttaccacgccccacggatactggcgccctcggacct 593 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1666 ggatcctccacgtttaccacgccccacggatactggcgccctcggacct 1618 >CG9699-RD feature: mRNA loc=X:complement(16415231..16416431,16416528..16416930, 16417330..16417789,16425063..16425391, 16425634..16426187);ID=FBan0009699;gene_id=FBgn0030772;ge ne_sym=CG9699;sym=CG9699;scaffold=AE003503;len=2947 Length = 2947 Score = 1049 bits (529), Expect = 0.0 Identities = 529/529 (100%) Strand = Plus / Minus Query: 65 ttaaaaagtctgtgctagcttataaacaaagtcgatttggttgcagctgctccaggattt 124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2150 ttaaaaagtctgtgctagcttataaacaaagtcgatttggttgcagctgctccaggattt 2091 Query: 125 ctctgggtcaccatataagtcctatatagtaggtagatgcatatatggcggtgcaaaatt 184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2090 ctctgggtcaccatataagtcctatatagtaggtagatgcatatatggcggtgcaaaatt 2031 Query: 185 gaacacgttcccatttccgttccctagacgtcgatcacgctgtcattcttcttcatctcc 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2030 gaacacgttcccatttccgttccctagacgtcgatcacgctgtcattcttcttcatctcc 1971 Query: 245 atgagatgggtctgcttgagcttctcctgcatctgggtgagcatgtcctgcatcctcctt 304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1970 atgagatgggtctgcttgagcttctcctgcatctgggtgagcatgtcctgcatcctcctt 1911 Query: 305 atctcctcgtccttttgcaggagcagcctgtccgtctccgagatggccgcgtcgaatcca 364 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1910 atctcctcgtccttttgcaggagcagcctgtccgtctccgagatggccgcgtcgaatcca 1851 Query: 365 ttggtcgagctaatcgagtcccgcttcaacttgccgcgctcacgcagcgcgtgctgcgaa 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1850 ttggtcgagctaatcgagtcccgcttcaacttgccgcgctcacgcagcgcgtgctgcgaa 1791 Query: 425 atctgcgagatgcactgcgcccggaagttctcgtagtgcacgtcctgcgtggtgtccttg 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1790 atctgcgagatgcactgcgcccggaagttctcgtagtgcacgtcctgcgtggtgtccttg 1731 Query: 485 aggtcctgcatgtgcgtggatatcaagaaggtgcgcagcttgatgaagtcgctgtgctcc 544 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1730 aggtcctgcatgtgcgtggatatcaagaaggtgcgcagcttgatgaagtcgctgtgctcc 1671 Query: 545 ggatcctccacgtttaccacgccccacggatactggcgccctcggacct 593 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1670 ggatcctccacgtttaccacgccccacggatactggcgccctcggacct 1622 >CG9699-RC feature: mRNA loc=X:complement(16415231..16416431,16416528..16416930, 16417330..16417789,16425063..16425372, 16425638..16426164);ID=FBan0009699;gene_id=FBgn0030772;ge ne_sym=CG9699;sym=CG9699;scaffold=AE003503;len=2901 Length = 2901 Score = 1049 bits (529), Expect = 0.0 Identities = 529/529 (100%) Strand = Plus / Minus Query: 65 ttaaaaagtctgtgctagcttataaacaaagtcgatttggttgcagctgctccaggattt 124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2104 ttaaaaagtctgtgctagcttataaacaaagtcgatttggttgcagctgctccaggattt 2045 Query: 125 ctctgggtcaccatataagtcctatatagtaggtagatgcatatatggcggtgcaaaatt 184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2044 ctctgggtcaccatataagtcctatatagtaggtagatgcatatatggcggtgcaaaatt 1985 Query: 185 gaacacgttcccatttccgttccctagacgtcgatcacgctgtcattcttcttcatctcc 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1984 gaacacgttcccatttccgttccctagacgtcgatcacgctgtcattcttcttcatctcc 1925 Query: 245 atgagatgggtctgcttgagcttctcctgcatctgggtgagcatgtcctgcatcctcctt 304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1924 atgagatgggtctgcttgagcttctcctgcatctgggtgagcatgtcctgcatcctcctt 1865 Query: 305 atctcctcgtccttttgcaggagcagcctgtccgtctccgagatggccgcgtcgaatcca 364 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1864 atctcctcgtccttttgcaggagcagcctgtccgtctccgagatggccgcgtcgaatcca 1805 Query: 365 ttggtcgagctaatcgagtcccgcttcaacttgccgcgctcacgcagcgcgtgctgcgaa 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1804 ttggtcgagctaatcgagtcccgcttcaacttgccgcgctcacgcagcgcgtgctgcgaa 1745 Query: 425 atctgcgagatgcactgcgcccggaagttctcgtagtgcacgtcctgcgtggtgtccttg 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1744 atctgcgagatgcactgcgcccggaagttctcgtagtgcacgtcctgcgtggtgtccttg 1685 Query: 485 aggtcctgcatgtgcgtggatatcaagaaggtgcgcagcttgatgaagtcgctgtgctcc 544 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1684 aggtcctgcatgtgcgtggatatcaagaaggtgcgcagcttgatgaagtcgctgtgctcc 1625 Query: 545 ggatcctccacgtttaccacgccccacggatactggcgccctcggacct 593 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1624 ggatcctccacgtttaccacgccccacggatactggcgccctcggacct 1576 >CG9699-RB feature: mRNA loc=X:complement(16415231..16416431,16416528..16416930, 16417330..16417789,16425063..16425391, 16425971..16426187);ID=FBan0009699;gene_id=FBgn0030772;ge ne_sym=CG9699;sym=CG9699;scaffold=AE003503;len=2610 Length = 2610 Score = 1049 bits (529), Expect = 0.0 Identities = 529/529 (100%) Strand = Plus / Minus Query: 65 ttaaaaagtctgtgctagcttataaacaaagtcgatttggttgcagctgctccaggattt 124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1813 ttaaaaagtctgtgctagcttataaacaaagtcgatttggttgcagctgctccaggattt 1754 Query: 125 ctctgggtcaccatataagtcctatatagtaggtagatgcatatatggcggtgcaaaatt 184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1753 ctctgggtcaccatataagtcctatatagtaggtagatgcatatatggcggtgcaaaatt 1694 Query: 185 gaacacgttcccatttccgttccctagacgtcgatcacgctgtcattcttcttcatctcc 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1693 gaacacgttcccatttccgttccctagacgtcgatcacgctgtcattcttcttcatctcc 1634 Query: 245 atgagatgggtctgcttgagcttctcctgcatctgggtgagcatgtcctgcatcctcctt 304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1633 atgagatgggtctgcttgagcttctcctgcatctgggtgagcatgtcctgcatcctcctt 1574 Query: 305 atctcctcgtccttttgcaggagcagcctgtccgtctccgagatggccgcgtcgaatcca 364 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1573 atctcctcgtccttttgcaggagcagcctgtccgtctccgagatggccgcgtcgaatcca 1514 Query: 365 ttggtcgagctaatcgagtcccgcttcaacttgccgcgctcacgcagcgcgtgctgcgaa 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1513 ttggtcgagctaatcgagtcccgcttcaacttgccgcgctcacgcagcgcgtgctgcgaa 1454 Query: 425 atctgcgagatgcactgcgcccggaagttctcgtagtgcacgtcctgcgtggtgtccttg 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1453 atctgcgagatgcactgcgcccggaagttctcgtagtgcacgtcctgcgtggtgtccttg 1394 Query: 485 aggtcctgcatgtgcgtggatatcaagaaggtgcgcagcttgatgaagtcgctgtgctcc 544 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1393 aggtcctgcatgtgcgtggatatcaagaaggtgcgcagcttgatgaagtcgctgtgctcc 1334 Query: 545 ggatcctccacgtttaccacgccccacggatactggcgccctcggacct 593 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1333 ggatcctccacgtttaccacgccccacggatactggcgccctcggacct 1285 >CG9699-RA feature: mRNA loc=X:complement(16415231..16416431,16416528..16416930, 16417330..16417789,16425063..16425391, 16426138..16426193);ID=FBan0009699;gene_id=FBgn0030772;ge ne_sym=CG9699;sym=CG9699;scaffold=AE003503;len=2449 Length = 2449 Score = 1049 bits (529), Expect = 0.0 Identities = 529/529 (100%) Strand = Plus / Minus Query: 65 ttaaaaagtctgtgctagcttataaacaaagtcgatttggttgcagctgctccaggattt 124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1652 ttaaaaagtctgtgctagcttataaacaaagtcgatttggttgcagctgctccaggattt 1593 Query: 125 ctctgggtcaccatataagtcctatatagtaggtagatgcatatatggcggtgcaaaatt 184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1592 ctctgggtcaccatataagtcctatatagtaggtagatgcatatatggcggtgcaaaatt 1533 Query: 185 gaacacgttcccatttccgttccctagacgtcgatcacgctgtcattcttcttcatctcc 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1532 gaacacgttcccatttccgttccctagacgtcgatcacgctgtcattcttcttcatctcc 1473 Query: 245 atgagatgggtctgcttgagcttctcctgcatctgggtgagcatgtcctgcatcctcctt 304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1472 atgagatgggtctgcttgagcttctcctgcatctgggtgagcatgtcctgcatcctcctt 1413 Query: 305 atctcctcgtccttttgcaggagcagcctgtccgtctccgagatggccgcgtcgaatcca 364 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1412 atctcctcgtccttttgcaggagcagcctgtccgtctccgagatggccgcgtcgaatcca 1353 Query: 365 ttggtcgagctaatcgagtcccgcttcaacttgccgcgctcacgcagcgcgtgctgcgaa 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1352 ttggtcgagctaatcgagtcccgcttcaacttgccgcgctcacgcagcgcgtgctgcgaa 1293 Query: 425 atctgcgagatgcactgcgcccggaagttctcgtagtgcacgtcctgcgtggtgtccttg 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1292 atctgcgagatgcactgcgcccggaagttctcgtagtgcacgtcctgcgtggtgtccttg 1233 Query: 485 aggtcctgcatgtgcgtggatatcaagaaggtgcgcagcttgatgaagtcgctgtgctcc 544 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1232 aggtcctgcatgtgcgtggatatcaagaaggtgcgcagcttgatgaagtcgctgtgctcc 1173 Query: 545 ggatcctccacgtttaccacgccccacggatactggcgccctcggacct 593 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1172 ggatcctccacgtttaccacgccccacggatactggcgccctcggacct 1124 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,850 Number of Sequences: 18737 Number of extensions: 15850 Number of successful extensions: 430 Number of sequences better than 1.0e-100: 7 Number of HSP's better than 0.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 416 Number of HSP's gapped (non-prelim): 14 length of query: 593 length of database: 41,270,998 effective HSP length: 17 effective length of query: 576 effective length of database: 40,952,469 effective search space: 23588622144 effective search space used: 23588622144 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI238971|AI238971 GH15129.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH15129 5 similar to CG4523: FBan0004523 'protein kinase' located on: X 6C7-6C7;: 04/10/2001, mRNA sequence. (571 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG4523-RB feature: mRNA loc=X:join(6424224..6424450,6424595..642... 1124 0.0 CG4523-RA feature: mRNA loc=X:join(6424224..6424450,6424509..642... 1124 0.0 >CG4523-RB feature: mRNA loc=X:join(6424224..6424450,6424595..6424837, 6424894..6425097,6425162..6425947,6426011..6427024, 6427089..6427394);ID=FBan0004523;gene_id=FBgn0029891;gene _sym=CG4523;sym=CG4523;scaffold=AE003438;len=2780 Length = 2780 Score = 1124 bits (567), Expect = 0.0 Identities = 570/571 (99%) Strand = Plus / Minus Query: 1 cggcgggcaagcatcgcccattggcggcaattggtcctgtcggtaatcgctgttcctcag 60 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2330 cggcgggcaagcatcgctcattggcggcaattggtcctgtcggtaatcgctgttcctcag 2271 Query: 61 cgaaagcgtcatctcaccgcgttcgcgcgccatcccaccgctgctcgaatagaacggatt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2270 cgaaagcgtcatctcaccgcgttcgcgcgccatcccaccgctgctcgaatagaacggatt 2211 Query: 121 gcggttgccaaagatttcgtaagccagggcaccgcaagcccacagatcggccttgccata 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2210 gcggttgccaaagatttcgtaagccagggcaccgcaagcccacagatcggccttgccata 2151 Query: 181 attgagtacggcaaacggaccgggcatcgtattgaagatctctggcgccatcaacgccgc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2150 attgagtacggcaaacggaccgggcatcgtattgaagatctctggcgccatcaacgccgc 2091 Query: 241 attgccgcccttgtcgacgtcgtgcgaaacgtacggcaggcgcaggccatgcaccttgtc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2090 attgccgcccttgtcgacgtcgtgcgaaacgtacggcaggcgcaggccatgcaccttgtc 2031 Query: 301 cgccagacaacagccaaagtcggagagcactagcaccggcgccgcatcgtcctgcagctc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2030 cgccagacaacagccaaagtcggagagcactagcaccggcgccgcatcgtcctgcagctc 1971 Query: 361 gattagcacattatcagactttaggtcacgatgggcaacgccgtgacggctcaaatggtt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1970 gattagcacattatcagactttaggtcacgatgggcaacgccgtgacggctcaaatggtt 1911 Query: 421 gacagcctcgagcatttgagccagcagcaggatgcgattgcgcgtgctcagatcctggct 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1910 gacagcctcgagcatttgagccagcagcaggatgcgattgcgcgtgctcagatcctggct 1851 Query: 481 atcgagcaggccgcgaagactgtgatcgtagcgtttcatcagcagatacagcgacatatt 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1850 atcgagcaggccgcgaagactgtgatcgtagcgtttcatcagcagatacagcgacatatt 1791 Query: 541 gcggccatagccctgtggattgatgcgttgc 571 ||||||||||||||||||||||||||||||| Sbjct: 1790 gcggccatagccctgtggattgatgcgttgc 1760 >CG4523-RA feature: mRNA loc=X:join(6424224..6424450,6424509..6424837, 6424900..6425097,6425162..6425947,6426011..6427024, 6427089..6427394);ID=FBan0004523;gene_id=FBgn0029891;gene _sym=CG4523;sym=CG4523;scaffold=AE003438;len=2860 Length = 2860 Score = 1124 bits (567), Expect = 0.0 Identities = 570/571 (99%) Strand = Plus / Minus Query: 1 cggcgggcaagcatcgcccattggcggcaattggtcctgtcggtaatcgctgttcctcag 60 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2410 cggcgggcaagcatcgctcattggcggcaattggtcctgtcggtaatcgctgttcctcag 2351 Query: 61 cgaaagcgtcatctcaccgcgttcgcgcgccatcccaccgctgctcgaatagaacggatt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2350 cgaaagcgtcatctcaccgcgttcgcgcgccatcccaccgctgctcgaatagaacggatt 2291 Query: 121 gcggttgccaaagatttcgtaagccagggcaccgcaagcccacagatcggccttgccata 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2290 gcggttgccaaagatttcgtaagccagggcaccgcaagcccacagatcggccttgccata 2231 Query: 181 attgagtacggcaaacggaccgggcatcgtattgaagatctctggcgccatcaacgccgc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2230 attgagtacggcaaacggaccgggcatcgtattgaagatctctggcgccatcaacgccgc 2171 Query: 241 attgccgcccttgtcgacgtcgtgcgaaacgtacggcaggcgcaggccatgcaccttgtc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2170 attgccgcccttgtcgacgtcgtgcgaaacgtacggcaggcgcaggccatgcaccttgtc 2111 Query: 301 cgccagacaacagccaaagtcggagagcactagcaccggcgccgcatcgtcctgcagctc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2110 cgccagacaacagccaaagtcggagagcactagcaccggcgccgcatcgtcctgcagctc 2051 Query: 361 gattagcacattatcagactttaggtcacgatgggcaacgccgtgacggctcaaatggtt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2050 gattagcacattatcagactttaggtcacgatgggcaacgccgtgacggctcaaatggtt 1991 Query: 421 gacagcctcgagcatttgagccagcagcaggatgcgattgcgcgtgctcagatcctggct 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1990 gacagcctcgagcatttgagccagcagcaggatgcgattgcgcgtgctcagatcctggct 1931 Query: 481 atcgagcaggccgcgaagactgtgatcgtagcgtttcatcagcagatacagcgacatatt 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1930 atcgagcaggccgcgaagactgtgatcgtagcgtttcatcagcagatacagcgacatatt 1871 Query: 541 gcggccatagccctgtggattgatgcgttgc 571 ||||||||||||||||||||||||||||||| Sbjct: 1870 gcggccatagccctgtggattgatgcgttgc 1840 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,184 Number of Sequences: 18737 Number of extensions: 14184 Number of successful extensions: 324 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 322 Number of HSP's gapped (non-prelim): 2 length of query: 571 length of database: 41,270,998 effective HSP length: 17 effective length of query: 554 effective length of database: 40,952,469 effective search space: 22687667826 effective search space used: 22687667826 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI292461|AI292461 GH15369.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH15369 5prime similar to M21017: D.melanogaster 18S, 5.8S 2S and 28S rRNA genes, complete, and 18S rRNA gene, 5' end, clone pDm238, mRNA sequence. (382 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4456 Number of Sequences: 18737 Number of extensions: 4456 Number of successful extensions: 292 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 292 Number of HSP's gapped (non-prelim): 0 length of query: 382 length of database: 41,270,998 effective HSP length: 17 effective length of query: 365 effective length of database: 40,952,469 effective search space: 14947651185 effective search space used: 14947651185 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI292834|AI292834 GH15838.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH15838 5prime, mRNA sequence. (484 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG6195-RA feature: mRNA loc=3R:complement(15472658..15472870,154... 955 0.0 >CG6195-RA feature: mRNA loc=3R:complement(15472658..15472870,15472952..15473616, 15473670..15473870, 15473968..15474241);ID=FBan0006195;gene_id=FBgn0038723;g ene_sym=CG6195;sym=CG6195;scaffold=AE003727;len=1353 Length = 1353 Score = 955 bits (482), Expect = 0.0 Identities = 482/482 (100%) Strand = Plus / Plus Query: 3 gcaccgctggtcaataaataaaagcgaacatttgtttaatttgaacttttgcatgctctg 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 127 gcaccgctggtcaataaataaaagcgaacatttgtttaatttgaacttttgcatgctctg 186 Query: 63 ccccgaactaagagagccaacagcatgggcatcctagagaagatcgcggagatcgagcga 122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 187 ccccgaactaagagagccaacagcatgggcatcctagagaagatcgcggagatcgagcga 246 Query: 123 gagatcgcgcggacgcagaagaacaaagccaccgaataccatctgggcctgctgaaggcc 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 247 gagatcgcgcggacgcagaagaacaaagccaccgaataccatctgggcctgctgaaggcc 306 Query: 183 aagttggccaagtatcgctcccagctgctggagccatccaagaagggcgaaaagggcgac 242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 307 aagttggccaagtatcgctcccagctgctggagccatccaagaagggcgaaaagggcgac 366 Query: 243 ggatttgatgtgctcaagagcggcgacgcccgggtggccctcattggctttccctccgtg 302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 367 ggatttgatgtgctcaagagcggcgacgcccgggtggccctcattggctttccctccgtg 426 Query: 303 gggaagtccacaatgttgtccactttgaccaaaacggaatcggaggcggcaaactatgag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 427 gggaagtccacaatgttgtccactttgaccaaaacggaatcggaggcggcaaactatgag 486 Query: 363 ttcaccactttgacctgcattccgggtgtcattgagtatcagggtgccaatatccagttg 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 487 ttcaccactttgacctgcattccgggtgtcattgagtatcagggtgccaatatccagttg 546 Query: 423 ctggatctgcccggaatcatcgagggcgctgcccagggcaaggggcgtggtcgtcaggtc 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 547 ctggatctgcccggaatcatcgagggcgctgcccagggcaaggggcgtggtcgtcaggtc 606 Query: 483 at 484 || Sbjct: 607 at 608 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,790 Number of Sequences: 18737 Number of extensions: 14790 Number of successful extensions: 423 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 422 Number of HSP's gapped (non-prelim): 1 length of query: 484 length of database: 41,270,998 effective HSP length: 17 effective length of query: 467 effective length of database: 40,952,469 effective search space: 19124803023 effective search space used: 19124803023 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI293153|AI293153 GH16259.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH16259 5prime similar to K01581: d.melanogaster 28s rrna gene, clone pdm238, mRNA sequence. (641 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8544 Number of Sequences: 18737 Number of extensions: 8544 Number of successful extensions: 153 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 153 Number of HSP's gapped (non-prelim): 0 length of query: 641 length of database: 41,270,998 effective HSP length: 17 effective length of query: 624 effective length of database: 40,952,469 effective search space: 25554340656 effective search space used: 25554340656 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI293286|AI293286 GH16447.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH16447 5, mRNA sequence. (612 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31003-RA feature: mRNA loc=3R:27187515..27189155;ID=FBan003100... 1148 0.0 >CG31003-RA feature: mRNA loc=3R:27187515..27189155;ID=FBan0031003;gene_id=FBgn005 1003;gene_sym=CG31003;sym=CG31003;scaffold=AE003778;len= 1641 Length = 1641 Score = 1148 bits (579), Expect = 0.0 Identities = 602/612 (98%) Strand = Plus / Plus Query: 1 gcagttccacacgcatacgcacaannnnnnnaaattttgtttgatattttaaacacatga 60 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 12 gcagttccacacgcatacgcacaatttttttaaattttgtttgatattttaaacacatga 71 Query: 61 aatctcgtggataaccaaagtcatactcatactcataccgacatactcaggaatctcaga 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 72 aatctcgtggataaccaaagtcatactcatactcataccgacatactcaggaatctcaga 131 Query: 121 tcagatggcttcccagagtaagaacagtgggttgaccaacaaggtgaccacggtggtggc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 132 tcagatggcttcccagagtaagaacagtgggttgaccaacaaggtgaccacggtggtggc 191 Query: 181 caccaatgccttcggcgctgatgtgatgagcgagatcagctacacggacgcgaaagttgt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 192 caccaatgccttcggcgctgatgtgatgagcgagatcagctacacggacgcgaaagttgt 251 Query: 241 gggcaatggcagcttcggcgtggtcttccaggccaaaatggtgcccagcaacgaaatggt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 252 gggcaatggcagcttcggcgtggtcttccaggccaaaatggtgcccagcaacgaaatggt 311 Query: 301 ggccataaagaaggtcctgcaggatcggcgcttcaagaatcgggaactgcaaatcatgcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 312 ggccataaagaaggtcctgcaggatcggcgcttcaagaatcgggaactgcaaatcatgcg 371 Query: 361 caagctgcgccacgataacatcataactctcaagtggttcttcttttcaagtggcgagaa 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 372 caagctgcgccacgataacatcataactctcaagtggttcttcttttcaagtggcgagaa 431 Query: 421 aagggacgaggtctatctgaacctggtcatggggttcttgccggagacgctgtataaagt 480 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 432 aagggacgaggtctatctgaacctggtcatggagttcttgccggagacgctgtataaagt 491 Query: 481 ggagcgacagtacgcaagggcaaagcaaaccttgccagttaactttgtccgactttacat 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 492 ggagcgacagtacgcaagggcaaagcaaaccttgccagttaactttgtccgactttacat 551 Query: 541 gtaccagctgctgaggagcatgggatatctccacagcttgggtttttgtcacagggacat 600 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct: 552 gtaccagctgctgaggagcatgggatatctccacagcttgggattctgtcacagggacat 611 Query: 601 caagccgcagaa 612 |||||||||||| Sbjct: 612 caagccgcagaa 623 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,240 Number of Sequences: 18737 Number of extensions: 15240 Number of successful extensions: 408 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 406 Number of HSP's gapped (non-prelim): 1 length of query: 612 length of database: 41,270,998 effective HSP length: 17 effective length of query: 595 effective length of database: 40,952,469 effective search space: 24366719055 effective search space used: 24366719055 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI294233|AI294233 LP07554.5prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP07554 5prime, mRNA sequence. (660 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,260 Number of Sequences: 18737 Number of extensions: 13260 Number of successful extensions: 322 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 322 Number of HSP's gapped (non-prelim): 0 length of query: 660 length of database: 41,270,998 effective HSP length: 17 effective length of query: 643 effective length of database: 40,952,469 effective search space: 26332437567 effective search space used: 26332437567 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI386606|AI386606 GH16741.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH16741 5prime, mRNA sequence. (480 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,539 Number of Sequences: 18737 Number of extensions: 11539 Number of successful extensions: 285 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 285 Number of HSP's gapped (non-prelim): 0 length of query: 480 length of database: 41,270,998 effective HSP length: 17 effective length of query: 463 effective length of database: 40,952,469 effective search space: 18960993147 effective search space used: 18960993147 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI386941|AI386941 GH17330.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH17330 5prime, mRNA sequence. (458 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6703 Number of Sequences: 18737 Number of extensions: 6703 Number of successful extensions: 133 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 133 Number of HSP's gapped (non-prelim): 0 length of query: 458 length of database: 41,270,998 effective HSP length: 17 effective length of query: 441 effective length of database: 40,952,469 effective search space: 18060038829 effective search space used: 18060038829 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI387468|AI387468 GH18008.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH18008 5 similar to CG7560: FBan0007560 'enzyme' located on: 3L 68C2-68C2;: 04/10/2001, mRNA sequence. (654 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG7560-RA feature: mRNA loc=3L:join(11382682..11383221,11383286.... 1296 0.0 >CG7560-RA feature: mRNA loc=3L:join(11382682..11383221,11383286..11383386, 11383454..11383927);ID=FBan0007560;gene_id=FBgn0036157;g ene_sym=CG7560;sym=CG7560;scaffold=AE003545;len=1115 Length = 1115 Score = 1296 bits (654), Expect = 0.0 Identities = 654/654 (100%) Strand = Plus / Plus Query: 1 atctgccgttgagcgagcgtggttccaaatcaatgcatgcgattcaagtgcccgccggtg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atctgccgttgagcgagcgtggttccaaatcaatgcatgcgattcaagtgcccgccggtg 60 Query: 61 gttcgtcgcctggtgctgcctcctacattccctgcgtgacctttgcccccgatcaaaatg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gttcgtcgcctggtgctgcctcctacattccctgcgtgacctttgcccccgatcaaaatg 120 Query: 121 aatccgtagtgacgaagcagcggataggaacgctcgtggcggagcgaacagcccaacatc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aatccgtagtgacgaagcagcggataggaacgctcgtggcggagcgaacagcccaacatc 180 Query: 181 gcctcttctacggcatcgaggtgatggccagcgatccgagtggccggccaacctgcctgg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 gcctcttctacggcatcgaggtgatggccagcgatccgagtggccggccaacctgcctgg 240 Query: 241 actttaatcacttcctgccgctcctgcccaccttcgtgagcttcgtttggctgagtcagc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 actttaatcacttcctgccgctcctgcccaccttcgtgagcttcgtttggctgagtcagc 300 Query: 301 ggtactgggacgtggagccagtgggtcaggtggagagccttcagatggcccaacacctgg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 ggtactgggacgtggagccagtgggtcaggtggagagccttcagatggcccaacacctgg 360 Query: 361 ccacacgcattcccgtgctgccccatgtgtccgcctatcgaatgagtaggcagcgactgg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 ccacacgcattcccgtgctgccccatgtgtccgcctatcgaatgagtaggcagcgactgg 420 Query: 421 atcagtttttggccctcaactttagcagtcttttggccgttcgaggggatcgagttcacg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 atcagtttttggccctcaactttagcagtcttttggccgttcgaggggatcgagttcacg 480 Query: 481 aggatcaggatttctcgattagctaccccatggtggagcaatcgatacggcagaggggtg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 aggatcaggatttctcgattagctaccccatggtggagcaatcgatacggcagaggggtg 540 Query: 541 aaacaatatcagtctgtgtgggtggatatccagagggatacactagtttaggcgacatac 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 aaacaatatcagtctgtgtgggtggatatccagagggatacactagtttaggcgacatac 600 Query: 601 cacaaaattcagctaagaacatggagtttctaaaggcaaagattgatgctggag 654 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 601 cacaaaattcagctaagaacatggagtttctaaaggcaaagattgatgctggag 654 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,366 Number of Sequences: 18737 Number of extensions: 14366 Number of successful extensions: 345 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 344 Number of HSP's gapped (non-prelim): 1 length of query: 654 length of database: 41,270,998 effective HSP length: 17 effective length of query: 637 effective length of database: 40,952,469 effective search space: 26086722753 effective search space used: 26086722753 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI387493|AI387493 GH18038.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH18038 5 similar to Tequila: FBan0004821 'endopeptidase' located on: 3L 66F4-66F4;: 04/10/2001, mRNA sequence. (592 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Tequila-RD feature: mRNA loc=3L:join(9033368..9033539,9033774..9... 850 0.0 Tequila-RB feature: mRNA loc=3L:join(9045910..9045977,9046034..9... 850 0.0 Tequila-RA feature: mRNA loc=3L:join(9033392..9033539,9033774..9... 850 0.0 >Tequila-RD feature: mRNA loc=3L:join(9033368..9033539,9033774..9034332, 9046559..9048658,9048729..9049120,9049178..9049333, 9049395..9050175,9050243..9050335,9050447..9050530, 9050592..9050835);ID=FBan0004821;gene_id=FBgn0023479;gene _sym=Tequila;sym=CG4821;scaffold=AE003553;len=4581 Length = 4581 Score = 850 bits (429), Expect = 0.0 Identities = 429/429 (100%) Strand = Plus / Plus Query: 164 atgaacatagtgctgacttccatattcgtcatccggagctacccaacccatttccactaa 223 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2493 atgaacatagtgctgacttccatattcgtcatccggagctacccaacccatttccactaa 2552 Query: 224 agaatgaaactccgcaacatcaggatctcaatgatgactgggatctgctacccaattcca 283 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2553 agaatgaaactccgcaacatcaggatctcaatgatgactgggatctgctacccaattcca 2612 Query: 284 atgctgaggaagtgactcccaaattagctacccgttcaagcttcaacacccaatgtgatt 343 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2613 atgctgaggaagtgactcccaaattagctacccgttcaagcttcaacacccaatgtgatt 2672 Query: 344 tcgattgcggcaacggccaatgcctgaagaaggaggagatttgcgatgggaagaaaaatt 403 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2673 tcgattgcggcaacggccaatgcctgaagaaggaggagatttgcgatgggaagaaaaatt 2732 Query: 404 gccccaatggcaaagatgaggctaactgcccgccatcggactacgaggtgcggctatcag 463 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2733 gccccaatggcaaagatgaggctaactgcccgccatcggactacgaggtgcggctatcag 2792 Query: 464 ggggcgagagtccaaacatgggccgtatcgaagtcaaggctaatggtcaatggggatatg 523 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2793 ggggcgagagtccaaacatgggccgtatcgaagtcaaggctaatggtcaatggggatatg 2852 Query: 524 tgtgtgatgacaagttcggtttgaaggatgcagatgtcgtttgccgagaacttggctttc 583 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2853 tgtgtgatgacaagttcggtttgaaggatgcagatgtcgtttgccgagaacttggctttc 2912 Query: 584 agatgggcg 592 ||||||||| Sbjct: 2913 agatgggcg 2921 >Tequila-RB feature: mRNA loc=3L:join(9045910..9045977,9046034..9046498, 9046559..9048658,9048729..9049120,9049178..9049333, 9049395..9050175,9050243..9050335,9050447..9050530, 9050592..9050831);ID=FBan0004821;gene_id=FBgn0023479;gene _sym=Tequila;sym=CG4821;scaffold=AE003553;len=4379 Length = 4379 Score = 850 bits (429), Expect = 0.0 Identities = 429/429 (100%) Strand = Plus / Plus Query: 164 atgaacatagtgctgacttccatattcgtcatccggagctacccaacccatttccactaa 223 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2295 atgaacatagtgctgacttccatattcgtcatccggagctacccaacccatttccactaa 2354 Query: 224 agaatgaaactccgcaacatcaggatctcaatgatgactgggatctgctacccaattcca 283 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2355 agaatgaaactccgcaacatcaggatctcaatgatgactgggatctgctacccaattcca 2414 Query: 284 atgctgaggaagtgactcccaaattagctacccgttcaagcttcaacacccaatgtgatt 343 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2415 atgctgaggaagtgactcccaaattagctacccgttcaagcttcaacacccaatgtgatt 2474 Query: 344 tcgattgcggcaacggccaatgcctgaagaaggaggagatttgcgatgggaagaaaaatt 403 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2475 tcgattgcggcaacggccaatgcctgaagaaggaggagatttgcgatgggaagaaaaatt 2534 Query: 404 gccccaatggcaaagatgaggctaactgcccgccatcggactacgaggtgcggctatcag 463 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2535 gccccaatggcaaagatgaggctaactgcccgccatcggactacgaggtgcggctatcag 2594 Query: 464 ggggcgagagtccaaacatgggccgtatcgaagtcaaggctaatggtcaatggggatatg 523 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2595 ggggcgagagtccaaacatgggccgtatcgaagtcaaggctaatggtcaatggggatatg 2654 Query: 524 tgtgtgatgacaagttcggtttgaaggatgcagatgtcgtttgccgagaacttggctttc 583 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2655 tgtgtgatgacaagttcggtttgaaggatgcagatgtcgtttgccgagaacttggctttc 2714 Query: 584 agatgggcg 592 ||||||||| Sbjct: 2715 agatgggcg 2723 >Tequila-RA feature: mRNA loc=3L:join(9033392..9033539,9033774..9034332, 9034382..9034576,9034730..9034975,9035029..9035505, 9035568..9035670,9043196..9043629,9043768..9044010, 9044075..9044539,9044598..9045977,9046034..9046498, 9046559..9048658,9048729..9049120,9049178..9049333, 9049395..9050175,9050243..9050335,9050447..9050530, 9050592..9050835);ID=FBan0004821;gene_id=FBgn0023479;gene _sym=Tequila;sym=CG4821;scaffold=AE003553;len=8565 Length = 8565 Score = 850 bits (429), Expect = 0.0 Identities = 429/429 (100%) Strand = Plus / Plus Query: 164 atgaacatagtgctgacttccatattcgtcatccggagctacccaacccatttccactaa 223 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6477 atgaacatagtgctgacttccatattcgtcatccggagctacccaacccatttccactaa 6536 Query: 224 agaatgaaactccgcaacatcaggatctcaatgatgactgggatctgctacccaattcca 283 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6537 agaatgaaactccgcaacatcaggatctcaatgatgactgggatctgctacccaattcca 6596 Query: 284 atgctgaggaagtgactcccaaattagctacccgttcaagcttcaacacccaatgtgatt 343 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6597 atgctgaggaagtgactcccaaattagctacccgttcaagcttcaacacccaatgtgatt 6656 Query: 344 tcgattgcggcaacggccaatgcctgaagaaggaggagatttgcgatgggaagaaaaatt 403 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6657 tcgattgcggcaacggccaatgcctgaagaaggaggagatttgcgatgggaagaaaaatt 6716 Query: 404 gccccaatggcaaagatgaggctaactgcccgccatcggactacgaggtgcggctatcag 463 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6717 gccccaatggcaaagatgaggctaactgcccgccatcggactacgaggtgcggctatcag 6776 Query: 464 ggggcgagagtccaaacatgggccgtatcgaagtcaaggctaatggtcaatggggatatg 523 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6777 ggggcgagagtccaaacatgggccgtatcgaagtcaaggctaatggtcaatggggatatg 6836 Query: 524 tgtgtgatgacaagttcggtttgaaggatgcagatgtcgtttgccgagaacttggctttc 583 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6837 tgtgtgatgacaagttcggtttgaaggatgcagatgtcgtttgccgagaacttggctttc 6896 Query: 584 agatgggcg 592 ||||||||| Sbjct: 6897 agatgggcg 6905 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,052 Number of Sequences: 18737 Number of extensions: 11052 Number of successful extensions: 282 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 276 Number of HSP's gapped (non-prelim): 6 length of query: 592 length of database: 41,270,998 effective HSP length: 17 effective length of query: 575 effective length of database: 40,952,469 effective search space: 23547669675 effective search space used: 23547669675 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI387537|AI387537 GH18088.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH18088 5 similar to CG5651: FBan0005651 'enzyme inhibitor' located on: 3L 66E5-66E5;: 04/10/2001, mRNA sequence. (645 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG5651-RA feature: mRNA loc=3L:complement(8930770..8931337,89313... 722 0.0 CG5651-RB feature: mRNA loc=3L:complement(8930770..8931337,89313... 628 e-179 CG30487-RA feature: mRNA loc=2R:complement(8002380..8003057);ID=... 502 e-141 >CG5651-RA feature: mRNA loc=3L:complement(8930770..8931337,8931395..8932111, 8932171..8932781,8932844..8933057, 8933367..8933464);ID=FBan0005651;gene_id=FBgn0035946;gen e_sym=CG5651;sym=CG5651;scaffold=AE003553;len=2208 Length = 2208 Score = 722 bits (364), Expect = 0.0 Identities = 364/364 (100%) Strand = Plus / Plus Query: 282 caagagcgtgcgttctgtctgttttacaacaatttcggccaagttcgcagcatgtcgcgc 341 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 49 caagagcgtgcgttctgtctgttttacaacaatttcggccaagttcgcagcatgtcgcgc 108 Query: 342 agaaaggagaacgaggaggtggacaagcagacgcgtattgccatcgtcagcgatgacaag 401 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 109 agaaaggagaacgaggaggtggacaagcagacgcgtattgccatcgtcagcgatgacaag 168 Query: 402 tgcaagcccaaacggtgtcggcaggagtgcaagaagacctgcccagtggtgcgcatgggc 461 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 169 tgcaagcccaaacggtgtcggcaggagtgcaagaagacctgcccagtggtgcgcatgggc 228 Query: 462 aagctctgcatcgaggtgacgcccacgtccaagatagcctcgttgtccgaggagctgtgc 521 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 229 aagctctgcatcgaggtgacgcccacgtccaagatagcctcgttgtccgaggagctgtgc 288 Query: 522 atcggttgcggtatttgcgtcaagaaatgccccttcgaggccatcacaatcatcaacttg 581 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 289 atcggttgcggtatttgcgtcaagaaatgccccttcgaggccatcacaatcatcaacttg 348 Query: 582 cccagcaatctggagaagcacacaacgcatcgatacagcaagaactccttcaagctgcat 641 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 349 cccagcaatctggagaagcacacaacgcatcgatacagcaagaactccttcaagctgcat 408 Query: 642 cgtc 645 |||| Sbjct: 409 cgtc 412 >CG5651-RB feature: mRNA loc=3L:complement(8930770..8931337,8931395..8932111, 8932171..8932781, 8932844..8933127);ID=FBan0005651;gene_id=FBgn0035946;gen e_sym=CG5651;sym=CG5651;scaffold=AE003553;len=2180 Length = 2180 Score = 628 bits (317), Expect = e-179 Identities = 317/317 (100%) Strand = Plus / Plus Query: 329 cagcatgtcgcgcagaaaggagaacgaggaggtggacaagcagacgcgtattgccatcgt 388 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 68 cagcatgtcgcgcagaaaggagaacgaggaggtggacaagcagacgcgtattgccatcgt 127 Query: 389 cagcgatgacaagtgcaagcccaaacggtgtcggcaggagtgcaagaagacctgcccagt 448 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 128 cagcgatgacaagtgcaagcccaaacggtgtcggcaggagtgcaagaagacctgcccagt 187 Query: 449 ggtgcgcatgggcaagctctgcatcgaggtgacgcccacgtccaagatagcctcgttgtc 508 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 188 ggtgcgcatgggcaagctctgcatcgaggtgacgcccacgtccaagatagcctcgttgtc 247 Query: 509 cgaggagctgtgcatcggttgcggtatttgcgtcaagaaatgccccttcgaggccatcac 568 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 248 cgaggagctgtgcatcggttgcggtatttgcgtcaagaaatgccccttcgaggccatcac 307 Query: 569 aatcatcaacttgcccagcaatctggagaagcacacaacgcatcgatacagcaagaactc 628 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 308 aatcatcaacttgcccagcaatctggagaagcacacaacgcatcgatacagcaagaactc 367 Query: 629 cttcaagctgcatcgtc 645 ||||||||||||||||| Sbjct: 368 cttcaagctgcatcgtc 384 >CG30487-RA feature: mRNA loc=2R:complement(8002380..8003057);ID=FBan0030487;gene_ id=FBgn0050487;gene_sym=CG30487;sym=CG30487;scaffold=AE0 03820;len=678 Length = 678 Score = 502 bits (253), Expect = e-141 Identities = 253/253 (100%) Strand = Plus / Plus Query: 1 gaaacgccataaacttgacggtcccaagggtggacaaactacaggatctggctaaatcga 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 426 gaaacgccataaacttgacggtcccaagggtggacaaactacaggatctggctaaatcga 485 Query: 61 tcccaacggatcccgatacagtctacctgacctgtcaatgtgatgatattttctctaatg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 486 tcccaacggatcccgatacagtctacctgacctgtcaatgtgatgatattttctctaatg 545 Query: 121 gaggcacagaagctccgactcaaagccccgacgaagttaatttcgaagagctgtccagct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 546 gaggcacagaagctccgactcaaagccccgacgaagttaatttcgaagagctgtccagct 605 Query: 181 acttcgaaaatatgctcaacatacccaagaatcttccgctcagcgctgaaataatgtata 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 606 acttcgaaaatatgctcaacatacccaagaatcttccgctcagcgctgaaataatgtata 665 Query: 241 cttaatgattgga 253 ||||||||||||| Sbjct: 666 cttaatgattgga 678 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,777 Number of Sequences: 18737 Number of extensions: 15777 Number of successful extensions: 415 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 412 Number of HSP's gapped (non-prelim): 3 length of query: 645 length of database: 41,270,998 effective HSP length: 17 effective length of query: 628 effective length of database: 40,952,469 effective search space: 25718150532 effective search space used: 25718150532 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI387853|AI387853 GH18528.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH18528 5, mRNA sequence. (673 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value R-RA feature: mRNA loc=3L:complement(1839743..1842305,1842690..1... 906 0.0 >R-RA feature: mRNA loc=3L:complement(1839743..1842305, 1842690..1842863);ID=FBan0001956;gene_id=FBgn0004636;gene _sym=R;sym=CG1956;scaffold=AE003473;len=2737 Length = 2737 Score = 906 bits (457), Expect = 0.0 Identities = 457/457 (100%) Strand = Plus / Plus Query: 217 ctacatatttaaatatatttgtcgttcgtttttgagccgttttttaaattatgcaacaag 276 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1505 ctacatatttaaatatatttgtcgttcgtttttgagccgttttttaaattatgcaacaag 1564 Query: 277 tgaaacattcgtaaactaaaacattcgtatttattgattcttttcgattgtactctacac 336 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1565 tgaaacattcgtaaactaaaacattcgtatttattgattcttttcgattgtactctacac 1624 Query: 337 atctacaactacaactacttatacacgcgaaagcccaaccaacaacaagtatatctttaa 396 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1625 atctacaactacaactacttatacacgcgaaagcccaaccaacaacaagtatatctttaa 1684 Query: 397 atagaaccgaaaacaacattcgaaacacaaatcaaattaagctaaactaaattgtacgcc 456 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1685 atagaaccgaaaacaacattcgaaacacaaatcaaattaagctaaactaaattgtacgcc 1744 Query: 457 taaaagataaagataacaaattccacgagagaaatgagcaaataaatcgagaaaggaaat 516 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1745 taaaagataaagataacaaattccacgagagaaatgagcaaataaatcgagaaaggaaat 1804 Query: 517 gaatcatgaataaggaacatattttataaaaatattgtatgcaaatgatgtcaaaatgtt 576 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1805 gaatcatgaataaggaacatattttataaaaatattgtatgcaaatgatgtcaaaatgtt 1864 Query: 577 gcaaacaaccagaagtaatgagccccctcccccttagaaattagtttaaaacaaatttac 636 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1865 gcaaacaaccagaagtaatgagccccctcccccttagaaattagtttaaaacaaatttac 1924 Query: 637 aattaattgtttaccacgatcagttgcatcaaatctg 673 ||||||||||||||||||||||||||||||||||||| Sbjct: 1925 aattaattgtttaccacgatcagttgcatcaaatctg 1961 Score = 369 bits (186), Expect = e-101 Identities = 186/186 (100%) Strand = Plus / Plus Query: 18 cgttctcgtttcgttttggatccgatggcaattgtcgaattgaaataaccaatctactat 77 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1306 cgttctcgtttcgttttggatccgatggcaattgtcgaattgaaataaccaatctactat 1365 Query: 78 atacaagcaaaacttaaactgacaaatgtttttaactgtttcaagtttttgtaattatta 137 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1366 atacaagcaaaacttaaactgacaaatgtttttaactgtttcaagtttttgtaattatta 1425 Query: 138 ccatttactactattatgattgtactatttttcgctgattaaccattaattcatatgggg 197 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1426 ccatttactactattatgattgtactatttttcgctgattaaccattaattcatatgggg 1485 Query: 198 aattat 203 |||||| Sbjct: 1486 aattat 1491 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 17,902 Number of Sequences: 18737 Number of extensions: 17902 Number of successful extensions: 547 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 545 Number of HSP's gapped (non-prelim): 2 length of query: 673 length of database: 41,270,998 effective HSP length: 17 effective length of query: 656 effective length of database: 40,952,469 effective search space: 26864819664 effective search space used: 26864819664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI388218|AI388218 GH19041.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH19041 5prime, mRNA sequence. (554 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG10249-RC feature: mRNA loc=2R:complement(9965201..9965866,9965... 1098 0.0 CG10249-RB feature: mRNA loc=2R:complement(9965201..9965866,9965... 1098 0.0 CG10249-RA feature: mRNA loc=2R:complement(9965201..9965866,9965... 1098 0.0 >CG10249-RC feature: mRNA loc=2R:complement(9965201..9965866,9965929..9966129, 9966237..9966449,9966511..9966757,9966862..9967290, 9967799..9969177,9969240..9969679,9973950..9974442, 9974830..9975098, 9975732..9975943);ID=FBan0010249;gene_id=FBgn0027596;gene _sym=CG10249;sym=CG10249;scaffold=AE003812;len=4549 Length = 4549 Score = 1098 bits (554), Expect = 0.0 Identities = 554/554 (100%) Strand = Plus / Plus Query: 1 ccattgcctgtgcagccaactactgtgattcctgcaaggaggccatccaggatctggcca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2529 ccattgcctgtgcagccaactactgtgattcctgcaaggaggccatccaggatctggcca 2588 Query: 61 ggggtttctcgaaggccagtcccacggccaccagaacgggaggagcagtgcgacgctcca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2589 ggggtttctcgaaggccagtcccacggccaccagaacgggaggagcagtgcgacgctcca 2648 Query: 121 cgtcggcggactcgagaattccgcgacccaagcacctctccagtccgagtccggtgcgca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2649 cgtcggcggactcgagaattccgcgacccaagcacctctccagtccgagtccggtgcgca 2708 Query: 181 aagagttcatgcggcagaacacctacacgctggccacgccttcgccaactccaagtccac 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2709 aagagttcatgcggcagaacacctacacgctggccacgccttcgccaactccaagtccac 2768 Query: 241 aggtggaaaggaaggcgcgattgagctccctgcaagagaagccaccgtcagtgtccagtt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2769 aggtggaaaggaaggcgcgattgagctccctgcaagagaagccaccgtcagtgtccagtt 2828 Query: 301 tccaggcatcggagccattgcccgaatcccaaagcttcatccgtcaaccgcagaaggatt 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2829 tccaggcatcggagccattgcccgaatcccaaagcttcatccgtcaaccgcagaaggatt 2888 Query: 361 cattggatctgagtctcttgggcgaggatgagttgatagtccgagaggagaagcgggtga 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2889 cattggatctgagtctcttgggcgaggatgagttgatagtccgagaggagaagcgggtga 2948 Query: 421 gcatcagctggtcgcgcgatgcctcaccagctccgctgatgacctcctcgggcactacca 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2949 gcatcagctggtcgcgcgatgcctcaccagctccgctgatgacctcctcgggcactacca 3008 Query: 481 agtccgaatcaccggaacaggagccggcaatgagctcctcaagtgattcaagtccgccca 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3009 agtccgaatcaccggaacaggagccggcaatgagctcctcaagtgattcaagtccgccca 3068 Query: 541 tcgacgtccagatt 554 |||||||||||||| Sbjct: 3069 tcgacgtccagatt 3082 >CG10249-RB feature: mRNA loc=2R:complement(9965201..9965866,9965929..9966129, 9966237..9966449,9966511..9966757,9966862..9967290, 9967799..9969177,9969240..9969679, 9969744..9969807);ID=FBan0010249;gene_id=FBgn0027596;gene _sym=CG10249;sym=CG10249;scaffold=AE003812;len=3639 Length = 3639 Score = 1098 bits (554), Expect = 0.0 Identities = 554/554 (100%) Strand = Plus / Plus Query: 1 ccattgcctgtgcagccaactactgtgattcctgcaaggaggccatccaggatctggcca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1619 ccattgcctgtgcagccaactactgtgattcctgcaaggaggccatccaggatctggcca 1678 Query: 61 ggggtttctcgaaggccagtcccacggccaccagaacgggaggagcagtgcgacgctcca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1679 ggggtttctcgaaggccagtcccacggccaccagaacgggaggagcagtgcgacgctcca 1738 Query: 121 cgtcggcggactcgagaattccgcgacccaagcacctctccagtccgagtccggtgcgca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1739 cgtcggcggactcgagaattccgcgacccaagcacctctccagtccgagtccggtgcgca 1798 Query: 181 aagagttcatgcggcagaacacctacacgctggccacgccttcgccaactccaagtccac 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1799 aagagttcatgcggcagaacacctacacgctggccacgccttcgccaactccaagtccac 1858 Query: 241 aggtggaaaggaaggcgcgattgagctccctgcaagagaagccaccgtcagtgtccagtt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1859 aggtggaaaggaaggcgcgattgagctccctgcaagagaagccaccgtcagtgtccagtt 1918 Query: 301 tccaggcatcggagccattgcccgaatcccaaagcttcatccgtcaaccgcagaaggatt 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1919 tccaggcatcggagccattgcccgaatcccaaagcttcatccgtcaaccgcagaaggatt 1978 Query: 361 cattggatctgagtctcttgggcgaggatgagttgatagtccgagaggagaagcgggtga 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1979 cattggatctgagtctcttgggcgaggatgagttgatagtccgagaggagaagcgggtga 2038 Query: 421 gcatcagctggtcgcgcgatgcctcaccagctccgctgatgacctcctcgggcactacca 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2039 gcatcagctggtcgcgcgatgcctcaccagctccgctgatgacctcctcgggcactacca 2098 Query: 481 agtccgaatcaccggaacaggagccggcaatgagctcctcaagtgattcaagtccgccca 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2099 agtccgaatcaccggaacaggagccggcaatgagctcctcaagtgattcaagtccgccca 2158 Query: 541 tcgacgtccagatt 554 |||||||||||||| Sbjct: 2159 tcgacgtccagatt 2172 >CG10249-RA feature: mRNA loc=2R:complement(9965201..9965866,9965929..9966129, 9966237..9966449,9966511..9966757,9966862..9967290, 9967799..9969177,9969240..9969679, 9973950..9974595);ID=FBan0010249;gene_id=FBgn0027596;gene _sym=CG10249;sym=CG10249;scaffold=AE003812;len=4221 Length = 4221 Score = 1098 bits (554), Expect = 0.0 Identities = 554/554 (100%) Strand = Plus / Plus Query: 1 ccattgcctgtgcagccaactactgtgattcctgcaaggaggccatccaggatctggcca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2201 ccattgcctgtgcagccaactactgtgattcctgcaaggaggccatccaggatctggcca 2260 Query: 61 ggggtttctcgaaggccagtcccacggccaccagaacgggaggagcagtgcgacgctcca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2261 ggggtttctcgaaggccagtcccacggccaccagaacgggaggagcagtgcgacgctcca 2320 Query: 121 cgtcggcggactcgagaattccgcgacccaagcacctctccagtccgagtccggtgcgca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2321 cgtcggcggactcgagaattccgcgacccaagcacctctccagtccgagtccggtgcgca 2380 Query: 181 aagagttcatgcggcagaacacctacacgctggccacgccttcgccaactccaagtccac 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2381 aagagttcatgcggcagaacacctacacgctggccacgccttcgccaactccaagtccac 2440 Query: 241 aggtggaaaggaaggcgcgattgagctccctgcaagagaagccaccgtcagtgtccagtt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2441 aggtggaaaggaaggcgcgattgagctccctgcaagagaagccaccgtcagtgtccagtt 2500 Query: 301 tccaggcatcggagccattgcccgaatcccaaagcttcatccgtcaaccgcagaaggatt 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2501 tccaggcatcggagccattgcccgaatcccaaagcttcatccgtcaaccgcagaaggatt 2560 Query: 361 cattggatctgagtctcttgggcgaggatgagttgatagtccgagaggagaagcgggtga 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2561 cattggatctgagtctcttgggcgaggatgagttgatagtccgagaggagaagcgggtga 2620 Query: 421 gcatcagctggtcgcgcgatgcctcaccagctccgctgatgacctcctcgggcactacca 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2621 gcatcagctggtcgcgcgatgcctcaccagctccgctgatgacctcctcgggcactacca 2680 Query: 481 agtccgaatcaccggaacaggagccggcaatgagctcctcaagtgattcaagtccgccca 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2681 agtccgaatcaccggaacaggagccggcaatgagctcctcaagtgattcaagtccgccca 2740 Query: 541 tcgacgtccagatt 554 |||||||||||||| Sbjct: 2741 tcgacgtccagatt 2754 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,462 Number of Sequences: 18737 Number of extensions: 14462 Number of successful extensions: 317 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 314 Number of HSP's gapped (non-prelim): 3 length of query: 554 length of database: 41,270,998 effective HSP length: 17 effective length of query: 537 effective length of database: 40,952,469 effective search space: 21991475853 effective search space used: 21991475853 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI388382|AI388382 GH19274.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH19274 5 similar to CG9130: FBan0009130 located on: 3L 61F4-61F4;: 04/10/2001, mRNA sequence. (482 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32332-RE feature: mRNA loc=3L:join(1232641..1233861,1233933..1... 955 0.0 CG32332-RD feature: mRNA loc=3L:join(1232641..1233861,1233933..1... 955 0.0 CG32332-RC feature: mRNA loc=3L:join(1232641..1233861,1233933..1... 955 0.0 CG32332-RB feature: mRNA loc=3L:join(1232641..1233861,1233933..1... 955 0.0 >CG32332-RE feature: mRNA loc=3L:join(1232641..1233861,1233933..1234352, 1234705..1235673, 1236117..1236617);ID=FBan0032332;gene_id=FBgn0052332;gene _sym=CG32332;sym=CG32332;scaffold=AE003471;len=3111 Length = 3111 Score = 955 bits (482), Expect = 0.0 Identities = 482/482 (100%) Strand = Plus / Plus Query: 1 agaatcctgactgggaagacgccatgctggggcacatcgcccagctgcccaagatgaagg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 574 agaatcctgactgggaagacgccatgctggggcacatcgcccagctgcccaagatgaagg 633 Query: 61 gtcccaccagcaagggcctcctggacaactgtgcctgctacgagaagctgaacgaacgtc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 634 gtcccaccagcaagggcctcctggacaactgtgcctgctacgagaagctgaacgaacgtc 693 Query: 121 acgagcagtggtgtcccacatcggagttgtccaagcgactgctgcccctcttcaatctct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 694 acgagcagtggtgtcccacatcggagttgtccaagcgactgctgcccctcttcaatctct 753 Query: 181 gcaagatgcagactggcaacatagtgctgatccttagattggtgtgcaatggtccgacca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 754 gcaagatgcagactggcaacatagtgctgatccttagattggtgtgcaatggtccgacca 813 Query: 241 ttgtgtccacgttccccttcagcaaggtctgctcccgcaatcccaagtgcccggagccct 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 814 ttgtgtccacgttccccttcagcaaggtctgctcccgcaatcccaagtgcccggagccct 873 Query: 301 gctgcggtccttgtggcccctgtggtccctgcggcccctgcccaccacctcccagctgcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 874 gctgcggtccttgtggcccctgtggtccctgcggcccctgcccaccacctcccagctgcg 933 Query: 361 gctcgtgcccaccgcctcctagctgtggcccaccatgtcctccaccctgcgacccctgcg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 934 gctcgtgcccaccgcctcctagctgtggcccaccatgtcctccaccctgcgacccctgcg 993 Query: 421 atccgtgcgatccctgcagtccctgctgtggcggcggaactgccaccggcgggcccatgg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 994 atccgtgcgatccctgcagtccctgctgtggcggcggaactgccaccggcgggcccatgg 1053 Query: 481 at 482 || Sbjct: 1054 at 1055 >CG32332-RD feature: mRNA loc=3L:join(1232641..1233861,1233933..1234352, 1234705..1235673, 1236117..1236617);ID=FBan0032332;gene_id=FBgn0052332;gene _sym=CG32332;sym=CG32332;scaffold=AE003471;len=3111 Length = 3111 Score = 955 bits (482), Expect = 0.0 Identities = 482/482 (100%) Strand = Plus / Plus Query: 1 agaatcctgactgggaagacgccatgctggggcacatcgcccagctgcccaagatgaagg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 574 agaatcctgactgggaagacgccatgctggggcacatcgcccagctgcccaagatgaagg 633 Query: 61 gtcccaccagcaagggcctcctggacaactgtgcctgctacgagaagctgaacgaacgtc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 634 gtcccaccagcaagggcctcctggacaactgtgcctgctacgagaagctgaacgaacgtc 693 Query: 121 acgagcagtggtgtcccacatcggagttgtccaagcgactgctgcccctcttcaatctct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 694 acgagcagtggtgtcccacatcggagttgtccaagcgactgctgcccctcttcaatctct 753 Query: 181 gcaagatgcagactggcaacatagtgctgatccttagattggtgtgcaatggtccgacca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 754 gcaagatgcagactggcaacatagtgctgatccttagattggtgtgcaatggtccgacca 813 Query: 241 ttgtgtccacgttccccttcagcaaggtctgctcccgcaatcccaagtgcccggagccct 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 814 ttgtgtccacgttccccttcagcaaggtctgctcccgcaatcccaagtgcccggagccct 873 Query: 301 gctgcggtccttgtggcccctgtggtccctgcggcccctgcccaccacctcccagctgcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 874 gctgcggtccttgtggcccctgtggtccctgcggcccctgcccaccacctcccagctgcg 933 Query: 361 gctcgtgcccaccgcctcctagctgtggcccaccatgtcctccaccctgcgacccctgcg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 934 gctcgtgcccaccgcctcctagctgtggcccaccatgtcctccaccctgcgacccctgcg 993 Query: 421 atccgtgcgatccctgcagtccctgctgtggcggcggaactgccaccggcgggcccatgg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 994 atccgtgcgatccctgcagtccctgctgtggcggcggaactgccaccggcgggcccatgg 1053 Query: 481 at 482 || Sbjct: 1054 at 1055 >CG32332-RC feature: mRNA loc=3L:join(1232641..1233861,1233933..1234352, 1234705..1234953,1235027..1235673, 1236117..1236617);ID=FBan0032332;gene_id=FBgn0052332;gene _sym=CG32332;sym=CG32332;scaffold=AE003471;len=3038 Length = 3038 Score = 955 bits (482), Expect = 0.0 Identities = 482/482 (100%) Strand = Plus / Plus Query: 1 agaatcctgactgggaagacgccatgctggggcacatcgcccagctgcccaagatgaagg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 574 agaatcctgactgggaagacgccatgctggggcacatcgcccagctgcccaagatgaagg 633 Query: 61 gtcccaccagcaagggcctcctggacaactgtgcctgctacgagaagctgaacgaacgtc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 634 gtcccaccagcaagggcctcctggacaactgtgcctgctacgagaagctgaacgaacgtc 693 Query: 121 acgagcagtggtgtcccacatcggagttgtccaagcgactgctgcccctcttcaatctct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 694 acgagcagtggtgtcccacatcggagttgtccaagcgactgctgcccctcttcaatctct 753 Query: 181 gcaagatgcagactggcaacatagtgctgatccttagattggtgtgcaatggtccgacca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 754 gcaagatgcagactggcaacatagtgctgatccttagattggtgtgcaatggtccgacca 813 Query: 241 ttgtgtccacgttccccttcagcaaggtctgctcccgcaatcccaagtgcccggagccct 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 814 ttgtgtccacgttccccttcagcaaggtctgctcccgcaatcccaagtgcccggagccct 873 Query: 301 gctgcggtccttgtggcccctgtggtccctgcggcccctgcccaccacctcccagctgcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 874 gctgcggtccttgtggcccctgtggtccctgcggcccctgcccaccacctcccagctgcg 933 Query: 361 gctcgtgcccaccgcctcctagctgtggcccaccatgtcctccaccctgcgacccctgcg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 934 gctcgtgcccaccgcctcctagctgtggcccaccatgtcctccaccctgcgacccctgcg 993 Query: 421 atccgtgcgatccctgcagtccctgctgtggcggcggaactgccaccggcgggcccatgg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 994 atccgtgcgatccctgcagtccctgctgtggcggcggaactgccaccggcgggcccatgg 1053 Query: 481 at 482 || Sbjct: 1054 at 1055 >CG32332-RB feature: mRNA loc=3L:join(1232641..1233861,1233933..1234352, 1234705..1234953,1235027..1235673, 1236117..1236617);ID=FBan0032332;gene_id=FBgn0052332;gene _sym=CG32332;sym=CG32332;scaffold=AE003471;len=3038 Length = 3038 Score = 955 bits (482), Expect = 0.0 Identities = 482/482 (100%) Strand = Plus / Plus Query: 1 agaatcctgactgggaagacgccatgctggggcacatcgcccagctgcccaagatgaagg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 574 agaatcctgactgggaagacgccatgctggggcacatcgcccagctgcccaagatgaagg 633 Query: 61 gtcccaccagcaagggcctcctggacaactgtgcctgctacgagaagctgaacgaacgtc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 634 gtcccaccagcaagggcctcctggacaactgtgcctgctacgagaagctgaacgaacgtc 693 Query: 121 acgagcagtggtgtcccacatcggagttgtccaagcgactgctgcccctcttcaatctct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 694 acgagcagtggtgtcccacatcggagttgtccaagcgactgctgcccctcttcaatctct 753 Query: 181 gcaagatgcagactggcaacatagtgctgatccttagattggtgtgcaatggtccgacca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 754 gcaagatgcagactggcaacatagtgctgatccttagattggtgtgcaatggtccgacca 813 Query: 241 ttgtgtccacgttccccttcagcaaggtctgctcccgcaatcccaagtgcccggagccct 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 814 ttgtgtccacgttccccttcagcaaggtctgctcccgcaatcccaagtgcccggagccct 873 Query: 301 gctgcggtccttgtggcccctgtggtccctgcggcccctgcccaccacctcccagctgcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 874 gctgcggtccttgtggcccctgtggtccctgcggcccctgcccaccacctcccagctgcg 933 Query: 361 gctcgtgcccaccgcctcctagctgtggcccaccatgtcctccaccctgcgacccctgcg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 934 gctcgtgcccaccgcctcctagctgtggcccaccatgtcctccaccctgcgacccctgcg 993 Query: 421 atccgtgcgatccctgcagtccctgctgtggcggcggaactgccaccggcgggcccatgg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 994 atccgtgcgatccctgcagtccctgctgtggcggcggaactgccaccggcgggcccatgg 1053 Query: 481 at 482 || Sbjct: 1054 at 1055 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,344 Number of Sequences: 18737 Number of extensions: 14344 Number of successful extensions: 371 Number of sequences better than 1.0e-100: 4 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 367 Number of HSP's gapped (non-prelim): 4 length of query: 482 length of database: 41,270,998 effective HSP length: 17 effective length of query: 465 effective length of database: 40,952,469 effective search space: 19042898085 effective search space used: 19042898085 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI401911|AI401911 GH03396.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH03396 3prime, mRNA sequence. (505 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG1287-RA feature: mRNA loc=3R:complement(3326692..3328117);ID=F... 995 0.0 >CG1287-RA feature: mRNA loc=3R:complement(3326692..3328117);ID=FBan0001287;gene_i d=FBgn0037506;gene_sym=CG1287;sym=CG1287;scaffold=AE00367 1;len=1426 Length = 1426 Score = 995 bits (502), Expect = 0.0 Identities = 504/505 (99%) Strand = Plus / Minus Query: 1 agatttgtgctttagcttcgaacaatttcgaaaagatacatttcaaaatatgaaaatggg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1386 agatttgtgctttagcttcgaacaatttcgaaaagatacatttcaaaatatgaaaatggg 1327 Query: 61 taattctaactaaattatacaatttgtggtaaaaccccaggcggtttattttgtgtatct 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1326 taattctaactaaattatacaatttgtggtaaaaccccaggcggtttattttgtgtatct 1267 Query: 121 gaataaatttaggttttcctacaccttaaaccaactcagttcttcctcttttggtctcca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1266 gaataaatttaggttttcctacaccttaaaccaactcagttcttcctcttttggtctcca 1207 Query: 181 gccaatataattgcgatgcggataaagatgttgagcgcatccatgtaaatggccagggca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1206 gccaatataattgcgatgcggataaagatgttgagcgcatccatgtaaatggccagggca 1147 Query: 241 tgattaattggatcgtaagggaatttactgtactggggatacaactccgccgacttaacg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1146 tgattaattggatcgtaagggaatttactgtactggggatacaactccgccgacttaacg 1087 Query: 301 atcctttgggtatcgtacagaagaaatccgctgaacagaatcagtccgccgtacaacgac 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1086 atcctttgggtatcgtacagaagaaatccgctgaacagaatcagtccgccgtacaacgac 1027 Query: 361 atgctggccagtcccgcccccactgcagtagtgggcggcaaccacatggaggctancgag 420 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 1026 atgctggccagtcccgcccccactgcagtagtgggcggcaaccacatggaggctagcgag 967 Query: 421 gaggcgaagaccacgcccaatccaatggccagcggtccgcccatatgcaggaacttttcg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 966 gaggcgaagaccacgcccaatccaatggccagcggtccgcccatatgcaggaacttttcg 907 Query: 481 ctcggggcacaagcggccacggtgg 505 ||||||||||||||||||||||||| Sbjct: 906 ctcggggcacaagcggccacggtgg 882 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,860 Number of Sequences: 18737 Number of extensions: 11860 Number of successful extensions: 284 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 283 Number of HSP's gapped (non-prelim): 1 length of query: 505 length of database: 41,270,998 effective HSP length: 17 effective length of query: 488 effective length of database: 40,952,469 effective search space: 19984804872 effective search space used: 19984804872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI402104|AI402104 GH07823.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH07823 3prime, mRNA sequence. (523 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG8430-RB feature: mRNA loc=2R:join(11202077..11202163,11202492.... 1037 0.0 CG8430-RA feature: mRNA loc=2R:join(11202401..11202609,11204055.... 1037 0.0 >CG8430-RB feature: mRNA loc=2R:join(11202077..11202163,11202492..11202609, 11204055..11204162,11204225..11204298, 11204359..11205659);ID=FBan0008430;gene_id=FBgn0034079;ge ne_sym=CG8430;sym=CG8430;scaffold=AE003808;len=1688 Length = 1688 Score = 1037 bits (523), Expect = 0.0 Identities = 523/523 (100%) Strand = Plus / Minus Query: 1 aatgatattgtcgatttatttagttactacacacaggtcaataaacgttgtaagcttaaa 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1682 aatgatattgtcgatttatttagttactacacacaggtcaataaacgttgtaagcttaaa 1623 Query: 61 ttatttaaccaatcttcgacggctttcaatagtgcgtaatttttgtaaagtttttacttt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1622 ttatttaaccaatcttcgacggctttcaatagtgcgtaatttttgtaaagtttttacttt 1563 Query: 121 aatgtggaacattcgtttccggtgtataatatgtgtatatccatctaaaagccgcgtata 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1562 aatgtggaacattcgtttccggtgtataatatgtgtatatccatctaaaagccgcgtata 1503 Query: 181 aacgtttagtaattgcaattgttgttggtttgatttaaatgccaatggtgcagacatctg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1502 aacgtttagtaattgcaattgttgttggtttgatttaaatgccaatggtgcagacatctg 1443 Query: 241 tgatccagctttgggatttctaaatcgcatgcccaatatatgtacatagctagtcgttgt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1442 tgatccagctttgggatttctaaatcgcatgcccaatatatgtacatagctagtcgttgt 1383 Query: 301 acgtatctatccaatggtgcgatccaatggtacgattacaatttgttttcgcaaggacat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1382 acgtatctatccaatggtgcgatccaatggtacgattacaatttgttttcgcaaggacat 1323 Query: 361 gatgcactttctcctgatccggtgacagcggcatggatcgccttggccacatattcaacg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1322 gatgcactttctcctgatccggtgacagcggcatggatcgccttggccacatattcaacg 1263 Query: 421 ttgcccttattcaggccactcatgctgatgcgtcccgtcttcagcaggtaaatgtggtac 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1262 ttgcccttattcaggccactcatgctgatgcgtcccgtcttcagcaggtaaatgtggtac 1203 Query: 481 tggtcgatcagcacacgaacatggctctcgttcagaccggtgt 523 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1202 tggtcgatcagcacacgaacatggctctcgttcagaccggtgt 1160 >CG8430-RA feature: mRNA loc=2R:join(11202401..11202609,11204055..11204162, 11204225..11204298, 11204359..11205659);ID=FBan0008430;gene_id=FBgn0034079;ge ne_sym=CG8430;sym=CG8430;scaffold=AE003808;len=1692 Length = 1692 Score = 1037 bits (523), Expect = 0.0 Identities = 523/523 (100%) Strand = Plus / Minus Query: 1 aatgatattgtcgatttatttagttactacacacaggtcaataaacgttgtaagcttaaa 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1686 aatgatattgtcgatttatttagttactacacacaggtcaataaacgttgtaagcttaaa 1627 Query: 61 ttatttaaccaatcttcgacggctttcaatagtgcgtaatttttgtaaagtttttacttt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1626 ttatttaaccaatcttcgacggctttcaatagtgcgtaatttttgtaaagtttttacttt 1567 Query: 121 aatgtggaacattcgtttccggtgtataatatgtgtatatccatctaaaagccgcgtata 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1566 aatgtggaacattcgtttccggtgtataatatgtgtatatccatctaaaagccgcgtata 1507 Query: 181 aacgtttagtaattgcaattgttgttggtttgatttaaatgccaatggtgcagacatctg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1506 aacgtttagtaattgcaattgttgttggtttgatttaaatgccaatggtgcagacatctg 1447 Query: 241 tgatccagctttgggatttctaaatcgcatgcccaatatatgtacatagctagtcgttgt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1446 tgatccagctttgggatttctaaatcgcatgcccaatatatgtacatagctagtcgttgt 1387 Query: 301 acgtatctatccaatggtgcgatccaatggtacgattacaatttgttttcgcaaggacat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1386 acgtatctatccaatggtgcgatccaatggtacgattacaatttgttttcgcaaggacat 1327 Query: 361 gatgcactttctcctgatccggtgacagcggcatggatcgccttggccacatattcaacg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1326 gatgcactttctcctgatccggtgacagcggcatggatcgccttggccacatattcaacg 1267 Query: 421 ttgcccttattcaggccactcatgctgatgcgtcccgtcttcagcaggtaaatgtggtac 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1266 ttgcccttattcaggccactcatgctgatgcgtcccgtcttcagcaggtaaatgtggtac 1207 Query: 481 tggtcgatcagcacacgaacatggctctcgttcagaccggtgt 523 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1206 tggtcgatcagcacacgaacatggctctcgttcagaccggtgt 1164 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,866 Number of Sequences: 18737 Number of extensions: 12866 Number of successful extensions: 265 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 263 Number of HSP's gapped (non-prelim): 2 length of query: 523 length of database: 41,270,998 effective HSP length: 17 effective length of query: 506 effective length of database: 40,952,469 effective search space: 20721949314 effective search space used: 20721949314 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI402253|AI402253 GH11240.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH11240 3prime, mRNA sequence. (626 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG11089-RA feature: mRNA loc=3R:join(20693447..20693513,20695436... 1158 0.0 >CG11089-RA feature: mRNA loc=3R:join(20693447..20693513,20695436..20695498, 20695556..20696628,20696692..20697125,20697185..20697311, 20697373..20697857);ID=FBan0011089;gene_id=FBgn0039241;ge ne_sym=CG11089;sym=CG11089;scaffold=AE003749;len=2249 Length = 2249 Score = 1158 bits (584), Expect = 0.0 Identities = 615/626 (98%) Strand = Plus / Minus Query: 1 cgtttaactaactaaaggcaagtggttttattgagcttggaatggtcataaggcagtttg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2249 cgtttaactaactaaaggcaagtggttttattgagcttggaatggtcataaggcagtttg 2190 Query: 61 atggggtttgattaacagggtgtttctataaaaatacttaaaacgctacaaatgttatca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2189 atggggtttgattaacagggtgtttctataaaaatacttaaaacgctacaaatgttatca 2130 Query: 121 aaaatatttcaaatacaactacaattatttcaaatatgtaattttgctacatatttaaaa 180 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 2129 aaaatatttcaaatacaactacaattatttcagatatgtaattttgctacatatttaaaa 2070 Query: 181 atgcctttctacgtaggttataaatttcagtttaaaacgtaaatcaaattaactgaattg 240 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 2069 atgcctttctacgtaggttatagatttcagtttagaacgtaaatcaaattaactgaattg 2010 Query: 241 aaaattatttacaattctcttatgtattcgacttgaaaagttgggatttaaagttgaact 300 | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 2009 agaattatttacaattctcttatgtattcgacttgagaagttgggatttaaagttgaact 1950 Query: 301 ttatggaaatcaaagaaagagcttaaaaactgggaatgaatcgtatactcaagagtgtgt 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1949 ttatggaaatcaaagaaagagcttaaaaactgggaatgaatcgtatactcaagagtgtgt 1890 Query: 361 tgaacctaatggtggaacaatcgcagattggtatgggccatgatgataccgtgctcatcg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1889 tgaacctaatggtggaacaatcgcagattggtatgggccatgatgataccgtgctcatcg 1830 Query: 421 caggcggcaatgacaccagcatcattggtggatcctgcgggactggctatgtangagacg 480 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 1829 caggcggcaatgacaccagcatcattggtggatcctgcgggactggctatgtaggagacg 1770 Query: 481 ccgctcaggctatcgcgatcgatattatcacggaaggggaataaggcatcngatcccaag 540 |||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct: 1769 ccgctcaggctagcgcgatcgatattatcacggaaggggaagaaggcatcggatcccaag 1710 Query: 541 gccaccccactcagctgctttaaccattccactttttgctcactggtcagttgggctggt 600 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1709 gccacgccactcagctgctttaaccattccactttttgctcactggtcagttgggctggt 1650 Query: 601 gccttatcgaacattccctccaactg 626 |||||||||||||||||||| ||||| Sbjct: 1649 gccttatcgaacattccctcgaactg 1624 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,412 Number of Sequences: 18737 Number of extensions: 13412 Number of successful extensions: 314 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 313 Number of HSP's gapped (non-prelim): 1 length of query: 626 length of database: 41,270,998 effective HSP length: 17 effective length of query: 609 effective length of database: 40,952,469 effective search space: 24940053621 effective search space used: 24940053621 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944531|AI944531 bs03f01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs03f01 5', mRNA sequence. (357 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8533 Number of Sequences: 18737 Number of extensions: 8533 Number of successful extensions: 784 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 784 Number of HSP's gapped (non-prelim): 0 length of query: 357 length of database: 41,270,998 effective HSP length: 17 effective length of query: 340 effective length of database: 40,952,469 effective search space: 13923839460 effective search space used: 13923839460 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944569|AI944569 bs05a05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs05a05 5', mRNA sequence. (329 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32039-RA feature: mRNA loc=3L:join(9317733..9317897,9317956..9... 563 e-160 >CG32039-RA feature: mRNA loc=3L:join(9317733..9317897,9317956..9318126, 9318186..9318714);ID=FBan0032039;gene_id=FBgn0052039;gen e_sym=CG32039;sym=CG32039;scaffold=AE003552;len=865 Length = 865 Score = 563 bits (284), Expect = e-160 Identities = 293/296 (98%) Strand = Plus / Plus Query: 34 ctataaacaaacccatattatagcttattcaattcaatttaacaccatgggagcctgtct 93 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 57 ctataaacaaacccatattataacttattcaattcaatttaacaccatgggagcctgtct 116 Query: 94 gtcctgctgcggccaaagcgccgaggaaaccaacctgatgccatcgcctgaggagcgccg 153 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 117 gtcctgctgcggccaaagcgccgaggaaaccaacctgatgccatcgcctgaggagcgccg 176 Query: 154 ccagcagcagttggatgcggcggaaaagcgtcgccaggagaatgaacatcggggcattaa 213 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 177 ccagcagcagttggatgcggcggaaaagcgtcgccaggagaatgaacatcggggcattaa 236 Query: 214 gaatccggacagcgtacgccgacagcaacaaagagcggaggaaatgcaacgcagggagga 273 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 237 gaatccggacagcgtacgccgacagcaacaaagagcggaggaaatgcaacgcagggagga 296 Query: 274 ggaagccgaccgtcagggtcaaggacaatccaatcttaggtggcaaactagctaaa 329 ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 297 ggaggccgcccgtcagggtcaaggacaatccaatcttaggtggcaaactagctaaa 352 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9178 Number of Sequences: 18737 Number of extensions: 9178 Number of successful extensions: 822 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 820 Number of HSP's gapped (non-prelim): 2 length of query: 329 length of database: 41,270,998 effective HSP length: 16 effective length of query: 313 effective length of database: 40,971,206 effective search space: 12823987478 effective search space used: 12823987478 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944726|AI944726 bs04f10.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs04f10 5', mRNA sequence. (480 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG9485-RC feature: mRNA loc=2R:join(16357449..16357530,16357975.... 381 e-105 CG9485-RB feature: mRNA loc=2R:join(16356972..16357267,16357975.... 381 e-105 CG9485-RA feature: mRNA loc=2R:join(16356231..16356334,16357975.... 381 e-105 >CG9485-RC feature: mRNA loc=2R:join(16357449..16357530,16357975..16358315, 16358379..16358736,16358787..16360190,16360248..16361103, 16361160..16361337,16361398..16361567, 16361632..16363120);ID=FBan0009485;gene_id=FBgn0034618;ge ne_sym=CG9485;sym=CG9485;scaffold=AE003453;len=4878 Length = 4878 Score = 381 bits (192), Expect = e-105 Identities = 201/204 (98%) Strand = Plus / Minus Query: 7 gatgcagtacatccaccaccagatggcatcgcggcagttgaatctcggcttgctgccgct 66 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 3592 gatgcagtacatccaccaccagatagcatcgcggcagttgaatctcggcttgctgccgct 3533 Query: 67 gtccaaaagattcggaatgagtccgtgtcgaagggtctgaccaaatccaatgatgatgaa 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3532 gtccaaaagattcggaatgagtccgtgtcgaagggtctgaccaaatccaatgatgatgaa 3473 Query: 127 gcgagcttcgttgtaacggccggtgaggaacatggagccacgcagagcgatgaaggtatc 186 |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 3472 gcgagcctcgttgtaacggccagtgaggaacatggagccacgcagagcgatgaaggtatc 3413 Query: 187 acggccccagcaccgcatatagcc 210 |||||||||||||||||||||||| Sbjct: 3412 acggccccagcaccgcatatagcc 3389 >CG9485-RB feature: mRNA loc=2R:join(16356972..16357267,16357975..16358315, 16358379..16358736,16358787..16360190,16360248..16361103, 16361160..16361337,16361398..16361567, 16361632..16363120);ID=FBan0009485;gene_id=FBgn0034618;ge ne_sym=CG9485;sym=CG9485;scaffold=AE003453;len=5092 Length = 5092 Score = 381 bits (192), Expect = e-105 Identities = 201/204 (98%) Strand = Plus / Minus Query: 7 gatgcagtacatccaccaccagatggcatcgcggcagttgaatctcggcttgctgccgct 66 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 3806 gatgcagtacatccaccaccagatagcatcgcggcagttgaatctcggcttgctgccgct 3747 Query: 67 gtccaaaagattcggaatgagtccgtgtcgaagggtctgaccaaatccaatgatgatgaa 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3746 gtccaaaagattcggaatgagtccgtgtcgaagggtctgaccaaatccaatgatgatgaa 3687 Query: 127 gcgagcttcgttgtaacggccggtgaggaacatggagccacgcagagcgatgaaggtatc 186 |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 3686 gcgagcctcgttgtaacggccagtgaggaacatggagccacgcagagcgatgaaggtatc 3627 Query: 187 acggccccagcaccgcatatagcc 210 |||||||||||||||||||||||| Sbjct: 3626 acggccccagcaccgcatatagcc 3603 >CG9485-RA feature: mRNA loc=2R:join(16356231..16356334,16357975..16358315, 16358379..16358736,16358787..16360190,16360248..16361103, 16361160..16361337,16361398..16361567, 16361632..16363120);ID=FBan0009485;gene_id=FBgn0034618;ge ne_sym=CG9485;sym=CG9485;scaffold=AE003453;len=4900 Length = 4900 Score = 381 bits (192), Expect = e-105 Identities = 201/204 (98%) Strand = Plus / Minus Query: 7 gatgcagtacatccaccaccagatggcatcgcggcagttgaatctcggcttgctgccgct 66 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 3614 gatgcagtacatccaccaccagatagcatcgcggcagttgaatctcggcttgctgccgct 3555 Query: 67 gtccaaaagattcggaatgagtccgtgtcgaagggtctgaccaaatccaatgatgatgaa 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3554 gtccaaaagattcggaatgagtccgtgtcgaagggtctgaccaaatccaatgatgatgaa 3495 Query: 127 gcgagcttcgttgtaacggccggtgaggaacatggagccacgcagagcgatgaaggtatc 186 |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 3494 gcgagcctcgttgtaacggccagtgaggaacatggagccacgcagagcgatgaaggtatc 3435 Query: 187 acggccccagcaccgcatatagcc 210 |||||||||||||||||||||||| Sbjct: 3434 acggccccagcaccgcatatagcc 3411 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,022 Number of Sequences: 18737 Number of extensions: 12022 Number of successful extensions: 264 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 258 Number of HSP's gapped (non-prelim): 6 length of query: 480 length of database: 41,270,998 effective HSP length: 17 effective length of query: 463 effective length of database: 40,952,469 effective search space: 18960993147 effective search space used: 18960993147 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944894|AI944894 bs06f11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs06f11 5', mRNA sequence. (475 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value BEST:GH09435-RA feature: mRNA loc=2L:join(15982656..15983099,159... 811 0.0 >BEST:GH09435-RA feature: mRNA loc=2L:join(15982656..15983099, 15983172..15983551);ID=FBan0013245;gene_id=FBgn0045827;g ene_sym=BEST:GH09435;sym=CG13245;scaffold=AE003649;len=8 24 Length = 824 Score = 811 bits (409), Expect = 0.0 Identities = 409/409 (100%) Strand = Plus / Plus Query: 67 caatagtaaaaagagcacacgtttcggaaaacctaaaccaagtcaagatgtgtggtggct 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 76 caatagtaaaaagagcacacgtttcggaaaacctaaaccaagtcaagatgtgtggtggct 135 Query: 127 gggcctgtgcctcctacaatatcgcctgctgcaatccccgcctgtcgacactgcgattct 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 136 gggcctgtgcctcctacaatatcgcctgctgcaatccccgcctgtcgacactgcgattct 195 Query: 187 ctggccgctgtttcgcacccacgccctgcggtccatgtgatgactgttccatttacggcg 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 196 ctggccgctgtttcgcacccacgccctgcggtccatgtgatgactgttccatttacggcg 255 Query: 247 gttgctgcggtggctgctgcgggtgctaggtgatctctgacctggagtagccacagagtt 306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 256 gttgctgcggtggctgctgcgggtgctaggtgatctctgacctggagtagccacagagtt 315 Query: 307 gggtggagagtccggaattcaactatcttgaagtaggccttgggaactgttggctgtcag 366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 316 gggtggagagtccggaattcaactatcttgaagtaggccttgggaactgttggctgtcag 375 Query: 367 ccatgaaacaaatatcattcagtcccagtccagtccttgtcggaacaacaaccttaaacg 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 376 ccatgaaacaaatatcattcagtcccagtccagtccttgtcggaacaacaaccttaaacg 435 Query: 427 ttcaccgggttcccacatccgtttcctaaccatgtgtggtggctgggct 475 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 436 ttcaccgggttcccacatccgtttcctaaccatgtgtggtggctgggct 484 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,403 Number of Sequences: 18737 Number of extensions: 10403 Number of successful extensions: 292 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 287 Number of HSP's gapped (non-prelim): 4 length of query: 475 length of database: 41,270,998 effective HSP length: 17 effective length of query: 458 effective length of database: 40,952,469 effective search space: 18756230802 effective search space used: 18756230802 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944898|AI944898 bs06g05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs06g05 5', mRNA sequence. (499 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31003-RA feature: mRNA loc=3R:27187515..27189155;ID=FBan003100... 926 0.0 >CG31003-RA feature: mRNA loc=3R:27187515..27189155;ID=FBan0031003;gene_id=FBgn005 1003;gene_sym=CG31003;sym=CG31003;scaffold=AE003778;len= 1641 Length = 1641 Score = 926 bits (467), Expect = 0.0 Identities = 484/492 (98%) Strand = Plus / Plus Query: 8 ggcagttccacacgcatacgcacaannnnnnnaaattttgtttgatattttaaacacatg 67 ||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 11 ggcagttccacacgcatacgcacaatttttttaaattttgtttgatattttaaacacatg 70 Query: 68 aaatctcgtggataaccaaagtcatactcatactcataccgacatactcaggaatctcag 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 71 aaatctcgtggataaccaaagtcatactcatactcataccgacatactcaggaatctcag 130 Query: 128 atcagatggcttcccagagtaagaacagtgggttgaccaacaaggtgaccacggtggtgg 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 131 atcagatggcttcccagagtaagaacagtgggttgaccaacaaggtgaccacggtggtgg 190 Query: 188 ccaccaatgccttcggcgctgatgtgatgagcgagatcagctacacggacgcgaaagttg 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 191 ccaccaatgccttcggcgctgatgtgatgagcgagatcagctacacggacgcgaaagttg 250 Query: 248 tgggcaatggcagcttcggcgtggtcttccaggccaaaatggtgcccagcaacgaaatgg 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 251 tgggcaatggcagcttcggcgtggtcttccaggccaaaatggtgcccagcaacgaaatgg 310 Query: 308 tggccataaagaaggtcctgcaggatcggcgcttcaagaatcgggaactgcaaatcatgc 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 311 tggccataaagaaggtcctgcaggatcggcgcttcaagaatcgggaactgcaaatcatgc 370 Query: 368 gcaagctgcgccacgataacatcatcactctcaagtggttcttcttttcaagtggcgaga 427 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 371 gcaagctgcgccacgataacatcataactctcaagtggttcttcttttcaagtggcgaga 430 Query: 428 aaagggacgaggtctatctgaacctggtcatggagttcttgccggagacgctgtataaag 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 431 aaagggacgaggtctatctgaacctggtcatggagttcttgccggagacgctgtataaag 490 Query: 488 tggagcgacagt 499 |||||||||||| Sbjct: 491 tggagcgacagt 502 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,325 Number of Sequences: 18737 Number of extensions: 13325 Number of successful extensions: 353 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 351 Number of HSP's gapped (non-prelim): 1 length of query: 499 length of database: 41,270,998 effective HSP length: 17 effective length of query: 482 effective length of database: 40,952,469 effective search space: 19739090058 effective search space used: 19739090058 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945401|AI945401 bs12e02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs12e02 5', mRNA sequence. (554 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG18662-RA feature: mRNA loc=2L:join(8972911..8973014,8973086..8... 928 0.0 >CG18662-RA feature: mRNA loc=2L:join(8972911..8973014,8973086..8973250, 8973308..8973668);ID=FBan0018662;gene_id=FBgn0040963;gen e_sym=CG18662;sym=CG18662;scaffold=AE003623;len=630 Length = 630 Score = 928 bits (468), Expect = 0.0 Identities = 508/522 (97%) Strand = Plus / Minus Query: 33 acgtatagtcaaatttaattcaaatttacgtaagctatgcgcacacagtcgtaagaccga 92 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | Sbjct: 625 acgtatagtcaaatttaattcaaatttacgtaagcaatgcgcacacagtcgtaagaccaa 566 Query: 93 aatttgtaaaaaatatttcgagccaatagtgagtgtttcttaacncagaaatattggtca 152 |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct: 565 aatttgtaaaaaatatgtcgagccaatagtgagtgtttcttaaaacagaaatattggtca 506 Query: 153 gtacacatccttctagggctccattccaccagattcagcatcgatcttgtgatcggtata 212 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 505 gtacacatccttctagggctccattccaccagattcggcatcgatcttgtgatcggtata 446 Query: 213 gatgggttgcaatatctcacgggcagcttcgtgatcagcttttcccagggcctgtgatct 272 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 445 gatgggttgcaatatctcacgggcagcttcgtgatcagcttttcccagggcctgtgatct 386 Query: 273 tccatacagcttgatgtacttcttttccttgtcgtgaaccaagtaaccacctccaagacc 332 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 385 tccatacagcttgatgtacttcttttccttgtcgtgaaccaagtaaccacctccaagacc 326 Query: 333 ctgggtgcacaagcccatcgactcagcttcctttnttaactcatcgtatacatcaagatg 392 ||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||| Sbjct: 325 ctgggtgcacaagcccatcgactcagcctcctttttcaactcatcgtatacatcaagatg 266 Query: 393 gtacttggccttggagaggctacgaatcacctgcttggcgctacccatttccccatggat 452 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 265 gtacttggccttggaaaggctacgaatcacctgcttggcgctacccatttccccatggat 206 Query: 453 gtaaacgtgggccatcatgtatttcgattttccactttccaccttggcaacaggaaaagc 512 |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 205 ataaacgtgggccatcatgtactttgattttccactttccaccttggcaacaggaaaagc 146 Query: 513 gactagacttcgcatcggcttctcacaataaagtcgagccgc 554 ||||||||||||||| |||||||||||||||||||||||||| Sbjct: 145 gactagacttcgcattggcttctcacaataaagtcgagccgc 104 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,657 Number of Sequences: 18737 Number of extensions: 10657 Number of successful extensions: 197 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 196 Number of HSP's gapped (non-prelim): 1 length of query: 554 length of database: 41,270,998 effective HSP length: 17 effective length of query: 537 effective length of database: 40,952,469 effective search space: 21991475853 effective search space used: 21991475853 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945496|AI945496 bs13e08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs13e08 5', mRNA sequence. (624 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31538-RA feature: mRNA loc=3R:complement(1101391..1103554);ID=... 1223 0.0 >CG31538-RA feature: mRNA loc=3R:complement(1101391..1103554);ID=FBan0031538;gene_ id=FBgn0051538;gene_sym=CG31538;sym=CG31538;scaffold=AE0 03603;len=2164 Length = 2164 Score = 1223 bits (617), Expect = 0.0 Identities = 617/617 (100%) Strand = Plus / Plus Query: 8 gtttcgtacagagctctccaaaatagaaaattcgaatttatttattcagtgttttgttgg 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 80 gtttcgtacagagctctccaaaatagaaaattcgaatttatttattcagtgttttgttgg 139 Query: 68 tcttacgagtccgtgaaatcgagttctttagtccgtgaagaaacgtgcttcgttttcgca 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 140 tcttacgagtccgtgaaatcgagttctttagtccgtgaagaaacgtgcttcgttttcgca 199 Query: 128 ggtttttgctaaattgttcgtgtatccattggttcacattatgagtactcatcagtatag 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 200 ggtttttgctaaattgttcgtgtatccattggttcacattatgagtactcatcagtatag 259 Query: 188 cctggggaggctggcccgccgaggcttcagcctgcggatgaatccgctggccggcacact 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 260 cctggggaggctggcccgccgaggcttcagcctgcggatgaatccgctggccggcacact 319 Query: 248 gcaaaggctttaccacacccgtagcaggccatgtgtggcccagagtgtgagccaggtggg 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 320 gcaaaggctttaccacacccgtagcaggccatgtgtggcccagagtgtgagccaggtggg 379 Query: 308 tgaacggtccaagccaacgttgcagccctacgacttcgaccgaagccgggtgcgtaaaat 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 380 tgaacggtccaagccaacgttgcagccctacgacttcgaccgaagccgggtgcgtaaaat 439 Query: 368 tgccggcgagaggaagacgctggtcgaccaggtgcggggcatgagcacaagcctgggaca 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 440 tgccggcgagaggaagacgctggtcgaccaggtgcggggcatgagcacaagcctgggaca 499 Query: 428 tgccaagttggtgccccaaaagatgtacggcaagacgaggctgttctcctccggaagcac 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 500 tgccaagttggtgccccaaaagatgtacggcaagacgaggctgttctcctccggaagcac 559 Query: 488 cctctacagtcgcttgcagcatctggaacagcagaacgaggaatattcgagtcgagagtc 547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 560 cctctacagtcgcttgcagcatctggaacagcagaacgaggaatattcgagtcgagagtc 619 Query: 548 ccagccgacgcacaccacagcctcattgtcggccacccagcagaggtacaatcaggcggc 607 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 620 ccagccgacgcacaccacagcctcattgtcggccacccagcagaggtacaatcaggcggc 679 Query: 608 aggattcggcaagggca 624 ||||||||||||||||| Sbjct: 680 aggattcggcaagggca 696 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,403 Number of Sequences: 18737 Number of extensions: 13403 Number of successful extensions: 221 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 220 Number of HSP's gapped (non-prelim): 1 length of query: 624 length of database: 41,270,998 effective HSP length: 17 effective length of query: 607 effective length of database: 40,952,469 effective search space: 24858148683 effective search space used: 24858148683 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945622|AI945622 bs14h06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs14h06 5', mRNA sequence. (288 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3599 Number of Sequences: 18737 Number of extensions: 3599 Number of successful extensions: 226 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 226 Number of HSP's gapped (non-prelim): 0 length of query: 288 length of database: 41,270,998 effective HSP length: 16 effective length of query: 272 effective length of database: 40,971,206 effective search space: 11144168032 effective search space used: 11144168032 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945640|AI945640 bs15b02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs15b02 5', mRNA sequence. (479 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6541 Number of Sequences: 18737 Number of extensions: 6541 Number of successful extensions: 130 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 130 Number of HSP's gapped (non-prelim): 0 length of query: 479 length of database: 41,270,998 effective HSP length: 17 effective length of query: 462 effective length of database: 40,952,469 effective search space: 18920040678 effective search space used: 18920040678 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945784|AI945784 bs16g12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs16g12 5', mRNA sequence. (305 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value R-RA feature: mRNA loc=3L:complement(1839743..1842305,1842690..1... 402 e-112 >R-RA feature: mRNA loc=3L:complement(1839743..1842305, 1842690..1842863);ID=FBan0001956;gene_id=FBgn0004636;gene _sym=R;sym=CG1956;scaffold=AE003473;len=2737 Length = 2737 Score = 402 bits (203), Expect = e-112 Identities = 219/227 (96%) Strand = Plus / Plus Query: 56 caaaagtataagcgtaaagtaaagaattttcaannnnnnnncgttctcgtttcgttttgg 115 ||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1265 caaaagtataagcgtaaagtaaagaattttcaaatttttttcgttctcgtttcgttttgg 1324 Query: 116 atccgatggcaattgtcgaattgaaataaccaatctactatatacaagcaaaacttaaac 175 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1325 atccgatggcaattgtcgaattgaaataaccaatctactatatacaagcaaaacttaaac 1384 Query: 176 tgacaaatgtttttaactgtttcaagtttttgtaattattaccatttactactattatga 235 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1385 tgacaaatgtttttaactgtttcaagtttttgtaattattaccatttactactattatga 1444 Query: 236 ttgtactatttttcgctgattaaccattaattcatatggggaattat 282 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1445 ttgtactatttttcgctgattaaccattaattcatatggggaattat 1491 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4962 Number of Sequences: 18737 Number of extensions: 4962 Number of successful extensions: 425 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 423 Number of HSP's gapped (non-prelim): 2 length of query: 305 length of database: 41,270,998 effective HSP length: 16 effective length of query: 289 effective length of database: 40,971,206 effective search space: 11840678534 effective search space used: 11840678534 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945874|AI945874 bs17h01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs17h01 5', mRNA sequence. (398 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value BEST:GH09435-RA feature: mRNA loc=2L:join(15982656..15983099,159... 656 0.0 >BEST:GH09435-RA feature: mRNA loc=2L:join(15982656..15983099, 15983172..15983551);ID=FBan0013245;gene_id=FBgn0045827;g ene_sym=BEST:GH09435;sym=CG13245;scaffold=AE003649;len=8 24 Length = 824 Score = 656 bits (331), Expect = 0.0 Identities = 331/331 (100%) Strand = Plus / Plus Query: 68 caatagtaaaaagagcacacgtttcggaaaacctaaaccaagtcaagatgtgtggtggct 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 76 caatagtaaaaagagcacacgtttcggaaaacctaaaccaagtcaagatgtgtggtggct 135 Query: 128 gggcctgtgcctcctacaatatcgcctgctgcaatccccgcctgtcgacactgcgattct 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 136 gggcctgtgcctcctacaatatcgcctgctgcaatccccgcctgtcgacactgcgattct 195 Query: 188 ctggccgctgtttcgcacccacgccctgcggtccatgtgatgactgttccatttacggcg 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 196 ctggccgctgtttcgcacccacgccctgcggtccatgtgatgactgttccatttacggcg 255 Query: 248 gttgctgcggtggctgctgcgggtgctaggtgatctctgacctggagtagccacagagtt 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 256 gttgctgcggtggctgctgcgggtgctaggtgatctctgacctggagtagccacagagtt 315 Query: 308 gggtggagagtccggaattcaactatcttgaagtaggccttgggaactgttggctgtcag 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 316 gggtggagagtccggaattcaactatcttgaagtaggccttgggaactgttggctgtcag 375 Query: 368 ccatgaaacaaatatcattcagtcccagtcc 398 ||||||||||||||||||||||||||||||| Sbjct: 376 ccatgaaacaaatatcattcagtcccagtcc 406 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8605 Number of Sequences: 18737 Number of extensions: 8605 Number of successful extensions: 744 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 740 Number of HSP's gapped (non-prelim): 4 length of query: 398 length of database: 41,270,998 effective HSP length: 17 effective length of query: 381 effective length of database: 40,952,469 effective search space: 15602890689 effective search space used: 15602890689 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946003|AI946003 bs19d09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs19d09 5', mRNA sequence. (194 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3373 Number of Sequences: 18737 Number of extensions: 3373 Number of successful extensions: 247 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 247 Number of HSP's gapped (non-prelim): 0 length of query: 194 length of database: 41,270,998 effective HSP length: 16 effective length of query: 178 effective length of database: 40,971,206 effective search space: 7292874668 effective search space used: 7292874668 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946215|AI946215 bs22c01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs22c01 5', mRNA sequence. (685 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,383 Number of Sequences: 18737 Number of extensions: 12383 Number of successful extensions: 300 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 300 Number of HSP's gapped (non-prelim): 0 length of query: 685 length of database: 41,270,998 effective HSP length: 17 effective length of query: 668 effective length of database: 40,952,469 effective search space: 27356249292 effective search space used: 27356249292 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946324|AI946324 bs23f03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs23f03 5', mRNA sequence. (463 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG30156-RA feature: mRNA loc=2R:complement(2042348..2042587,2042... 872 0.0 >CG30156-RA feature: mRNA loc=2R:complement(2042348..2042587,2042645..2042811, 2042871..2043888);ID=FBan0030156;gene_id=FBgn0050156;gen e_sym=CG30156;sym=CG30156;scaffold=AE003790;len=1425 Length = 1425 Score = 872 bits (440), Expect = 0.0 Identities = 452/456 (99%) Strand = Plus / Plus Query: 8 ctatttcggttacctctaatatacatacaaaggcactttgttaaattcaccaactcggtg 67 ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 88 ctatttcggctacctctaatatacatacaaaagcactttgttaaattcaccaactcggtg 147 Query: 68 gattgtcccagaacaacaaaccaaaatttaaaatttgcaaacgaacagagaaaaacgaat 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 148 gattgtcccagaacaacaaaccaaaatttaaaatttgcaaacgaacagagaaaaacgaat 207 Query: 128 ccttttttgtcttctcacgctgctgggaaggagaagaaagtaaccaagaactggaggacg 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 208 ccttttttgtcttctcacgctgctgggaaggagaagaaagtaaccaagaactggaggacg 267 Query: 188 acgacttcacaatgggaatcctgcaggcgaggaggcatcactgcgtcgacaaagtggtga 247 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 268 acgacttcacaatgggaatcctgcaggcgaggaggcatcactgcgtcgacaaggtggtga 327 Query: 248 gtgacctgtgcttgggacactacgagcacgctctgaggcagatcaacgaggatctggaag 307 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 328 gtgacctgtgcctgggacactacgagcacgctctgaggcagatcaacgaggatctggaag 387 Query: 308 gcttacagaaccacgatgagatcatggcgctgctggagctaaagaatatcattttgagac 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 388 gcttacagaaccacgatgagatcatggcgctgctggagctaaagaatatcattttgagac 447 Query: 368 tgaggctgaagggcgaggcccagcggaccataggcccaactcgcaaatctgacgccctgc 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 448 tgaggctgaagggcgaggcccagcggaccataggcccaactcgcaaatctgacgccctgc 507 Query: 428 cccacaagttcacactcgagatgctggacgtggtgc 463 |||||||||||||||||||||||||||||||||||| Sbjct: 508 cccacaagttcacactcgagatgctggacgtggtgc 543 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,097 Number of Sequences: 18737 Number of extensions: 14097 Number of successful extensions: 343 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 342 Number of HSP's gapped (non-prelim): 1 length of query: 463 length of database: 41,270,998 effective HSP length: 17 effective length of query: 446 effective length of database: 40,952,469 effective search space: 18264801174 effective search space used: 18264801174 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946604|AI946604 bs28f01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs28f01 5', mRNA sequence. (414 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31538-RA feature: mRNA loc=3R:complement(1101391..1103554);ID=... 807 0.0 >CG31538-RA feature: mRNA loc=3R:complement(1101391..1103554);ID=FBan0031538;gene_ id=FBgn0051538;gene_sym=CG31538;sym=CG31538;scaffold=AE0 03603;len=2164 Length = 2164 Score = 807 bits (407), Expect = 0.0 Identities = 407/407 (100%) Strand = Plus / Plus Query: 8 gcttcagcctgcggatgaatccgctggccggcacactgcaaaggctttaccacacccgta 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 283 gcttcagcctgcggatgaatccgctggccggcacactgcaaaggctttaccacacccgta 342 Query: 68 gcaggccatgtgtggcccagagtgtgagccaggtgggtgaacggtccaagccaacgttgc 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 343 gcaggccatgtgtggcccagagtgtgagccaggtgggtgaacggtccaagccaacgttgc 402 Query: 128 agccctacgacttcgaccgaagccgggtgcgtaaaattgccggcgagaggaagacgctgg 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 403 agccctacgacttcgaccgaagccgggtgcgtaaaattgccggcgagaggaagacgctgg 462 Query: 188 tcgaccaggtgcggggcatgagcacaagcctgggacatgccaagttggtgccccaaaaga 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 463 tcgaccaggtgcggggcatgagcacaagcctgggacatgccaagttggtgccccaaaaga 522 Query: 248 tgtacggcaagacgaggctgttctcctccggaagcaccctctacagtcgcttgcagcatc 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 523 tgtacggcaagacgaggctgttctcctccggaagcaccctctacagtcgcttgcagcatc 582 Query: 308 tggaacagcagaacgaggaatattcgagtcgagagtcccagccgacgcacaccacagcct 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 583 tggaacagcagaacgaggaatattcgagtcgagagtcccagccgacgcacaccacagcct 642 Query: 368 cattgtcggccacccagcagaggtacaatcaggcggcaggattcggc 414 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 643 cattgtcggccacccagcagaggtacaatcaggcggcaggattcggc 689 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8706 Number of Sequences: 18737 Number of extensions: 8706 Number of successful extensions: 563 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 562 Number of HSP's gapped (non-prelim): 1 length of query: 414 length of database: 41,270,998 effective HSP length: 17 effective length of query: 397 effective length of database: 40,952,469 effective search space: 16258130193 effective search space used: 16258130193 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946960|AI946960 bs33e02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs33e02 5', mRNA sequence. (685 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG30487-RA feature: mRNA loc=2R:complement(8002380..8003057);ID=... 1336 0.0 >CG30487-RA feature: mRNA loc=2R:complement(8002380..8003057);ID=FBan0030487;gene_ id=FBgn0050487;gene_sym=CG30487;sym=CG30487;scaffold=AE0 03820;len=678 Length = 678 Score = 1336 bits (674), Expect = 0.0 Identities = 677/678 (99%) Strand = Plus / Plus Query: 8 ccatcacacatctcaagattctcaaaattaggtcacacacataagcgccaacaattcttt 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ccatcacacatctcaagattctcaaaattaggtcacacacataagcgccaacaattcttt 60 Query: 68 acaattaaaaagcatgtctatagaaaaaatctcctccgagctgcgtaagatgataatatc 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 acaattaaaaagcatgtctatagaaaaaatctcctccgagctgcgtaagatgataatatc 120 Query: 128 tgacaatccaatcgaagcaacaactttcgataaatctgcaatagaggcaactttggattc 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tgacaatccaatcgaagcaacaactttcgataaatctgcaatagaggcaactttggattc 180 Query: 188 caacaaattcgaagatctacgaattccgaagcatacactgaagcaaaagtttcttcttcg 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 caacaaattcgaagatctacgaattccgaagcatacactgaagcaaaagtttcttcttcg 240 Query: 248 aaagtcaataattgaacatccctttaaaagaattcgtgccgaaggagtggattgggctca 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 aaagtcaataattgaacatccctttaaaagaattcgtgccgaaggagtggattgggctca 300 Query: 308 caaaattcgagacaccgacgaagagaaggaatctaattgggcaaagattgcgactggaaa 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 caaaattcgagacaccgacgaagagaaggaatctaattgggcaaagattgcgactggaaa 360 Query: 368 ggttactggcaatgcctacgatcttaaaaccatgatgagcgagtgtgaaaatatttgtgg 427 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 ggtttctggcaatgcctacgatcttaaaaccatgatgagcgagtgtgaaaatatttgtgg 420 Query: 428 ttacggaaacgccataaacttgacggtcccaagggtggacaaactacaggatctggctaa 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 ttacggaaacgccataaacttgacggtcccaagggtggacaaactacaggatctggctaa 480 Query: 488 atcgatcccaacggatcccgatacagtctacctgacctgtcaatgtgatgatattttctc 547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 atcgatcccaacggatcccgatacagtctacctgacctgtcaatgtgatgatattttctc 540 Query: 548 taatggaggcacagaagctccgactcaaagccccgacgaagttaatttcgaagagctgtc 607 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 taatggaggcacagaagctccgactcaaagccccgacgaagttaatttcgaagagctgtc 600 Query: 608 cagctacttcgaaaatatgctcaacatacccaagaatcttccgctcagcgctgaaataat 667 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 601 cagctacttcgaaaatatgctcaacatacccaagaatcttccgctcagcgctgaaataat 660 Query: 668 gtatacttaatgattgga 685 |||||||||||||||||| Sbjct: 661 gtatacttaatgattgga 678 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,263 Number of Sequences: 18737 Number of extensions: 13263 Number of successful extensions: 223 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 222 Number of HSP's gapped (non-prelim): 1 length of query: 685 length of database: 41,270,998 effective HSP length: 17 effective length of query: 668 effective length of database: 40,952,469 effective search space: 27356249292 effective search space used: 27356249292 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI947185|AI947185 bs36a11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs36a11 5', mRNA sequence. (593 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,207 Number of Sequences: 18737 Number of extensions: 15207 Number of successful extensions: 522 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 522 Number of HSP's gapped (non-prelim): 0 length of query: 593 length of database: 41,270,998 effective HSP length: 17 effective length of query: 576 effective length of database: 40,952,469 effective search space: 23588622144 effective search space used: 23588622144 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662047|BE662047 bs16e04.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs16e04 5', mRNA sequence. (291 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG30156-RA feature: mRNA loc=2R:complement(2042348..2042587,2042... 446 e-125 >CG30156-RA feature: mRNA loc=2R:complement(2042348..2042587,2042645..2042811, 2042871..2043888);ID=FBan0030156;gene_id=FBgn0050156;gen e_sym=CG30156;sym=CG30156;scaffold=AE003790;len=1425 Length = 1425 Score = 446 bits (225), Expect = e-125 Identities = 267/281 (95%) Strand = Plus / Plus Query: 11 cagtcaacttaagtcgaaactatttcggcttcctttaatatacatacaaaggcgctgtgt 70 ||||||||||| ||||||||||||||||| ||| ||||||||||||||| || || ||| Sbjct: 69 cagtcaacttagttcgaaactatttcggctacctctaatatacatacaaaagcactttgt 128 Query: 71 taaattcaccaactcggtggattgtcccagaacaacaaaccactatttgggatttgcaaa 130 |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct: 129 taaattcaccaactcggtggattgtcccagaacaacaaaccaaaatttaaaatttgcaaa 188 Query: 131 cgaacagagaaaaacgaatccttttttgtcttctcacgctgctgggaaggagaagaaagt 190 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 189 cgaacagagaaaaacgaatccttttttgtcttctcacgctgctgggaaggagaagaaagt 248 Query: 191 aaccaagaactggaggacgacgacttcacaatgggaatcctgcaggcgaggaggcatcac 250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 249 aaccaagaactggaggacgacgacttcacaatgggaatcctgcaggcgaggaggcatcac 308 Query: 251 tgcgtcgacaaagtggtgagtgacctgtgcttgggacacta 291 ||||||||||| |||||||||||||||||| |||||||||| Sbjct: 309 tgcgtcgacaaggtggtgagtgacctgtgcctgggacacta 349 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8254 Number of Sequences: 18737 Number of extensions: 8254 Number of successful extensions: 695 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 694 Number of HSP's gapped (non-prelim): 1 length of query: 291 length of database: 41,270,998 effective HSP length: 16 effective length of query: 275 effective length of database: 40,971,206 effective search space: 11267081650 effective search space used: 11267081650 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662160|BE662160 bs25d01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs25d01 5', mRNA sequence. (270 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG18662-RA feature: mRNA loc=2L:join(8972911..8973014,8973086..8... 391 e-108 >CG18662-RA feature: mRNA loc=2L:join(8972911..8973014,8973086..8973250, 8973308..8973668);ID=FBan0018662;gene_id=FBgn0040963;gen e_sym=CG18662;sym=CG18662;scaffold=AE003623;len=630 Length = 630 Score = 391 bits (197), Expect = e-108 Identities = 227/237 (95%) Strand = Plus / Minus Query: 34 acgtatagtcaaatttaattcaaatttacgtaagctatgcgcacacagttgtaagaccaa 93 ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| Sbjct: 625 acgtatagtcaaatttaattcaaatttacgtaagcaatgcgcacacagtcgtaagaccaa 566 Query: 94 aatttgtaaaaaatatttcgagccaatagtgagtgtttcttaaaacagaaatattggtta 153 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct: 565 aatttgtaaaaaatatgtcgagccaatagtgagtgtttcttaaaacagaaatattggtca 506 Query: 154 gtacacattcttctagggctccattccaccagattcagcatcgatcttgtgatcggtata 213 |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 505 gtacacatccttctagggctccattccaccagattcggcatcgatcttgtgatcggtata 446 Query: 214 gatgggttggaatatttcacgggcagctttgtgatcagctttttccagggcctgtga 270 ||||||||| ||||| ||||||||||||| ||||||||||||| ||||||||||||| Sbjct: 445 gatgggttgcaatatctcacgggcagcttcgtgatcagcttttcccagggcctgtga 389 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4967 Number of Sequences: 18737 Number of extensions: 4967 Number of successful extensions: 365 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 364 Number of HSP's gapped (non-prelim): 1 length of query: 270 length of database: 41,270,998 effective HSP length: 16 effective length of query: 254 effective length of database: 40,971,206 effective search space: 10406686324 effective search space used: 10406686324 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662181|BE662181 bs28b08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs28b08 5', mRNA sequence. (444 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value His-Psi:CR31616-RA feature: pseudogene loc=2L:21373859..21374323... 827 0.0 His-PsiCR31615-RA feature: pseudogene loc=2L:21374707..21375105;... 716 0.0 His2A:CG31618-RA feature: mRNA loc=2L:21389579..21390160;ID=FBan... 589 e-168 >His-Psi:CR31616-RA feature: pseudogene loc=2L:21373859..21374323;ID=FBan0031616;gene_id=FBgn005 1616;gene_sym=His- Psi:CR31616;sym=CR31616;type=pseudogene;scaffold=AE00367 0;len=465 Length = 465 Score = 827 bits (417), Expect = 0.0 Identities = 428/432 (99%) Strand = Plus / Plus Query: 8 ggttcgactagcattcgtgttccatgtgtaaagtgaatttattaaaataaatgaaacaaa 67 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7 ggttccactagcattcgtgttccatgtgtaaagtgaatttattaaaataaatgaaacaaa 66 Query: 68 atgtctggacgtggaaaaggtggcaaagtgaagggaaaggcaaagtcccgctcaaaccgt 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 67 atgtctggacgtggaaaaggtggcaaagtgaagggaaaggcaaagtcccgctcaaaccgt 126 Query: 128 gccggtcttcaattccctgtgggccgtattcaccgttngttccggaagggcaactacgca 187 ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct: 127 gccggtcttcaattccctgtgggccgtattcaccgtttgctccggaagggcaactacgca 186 Query: 188 gagcgtgttggtgcaggcgctccagtttacctagctgccgtaatggaatatctggccgct 247 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 187 gagcgtgttggtgcaggcgctccagtttacctagctgccgtaatggaatatctagccgct 246 Query: 248 gaggttctcaagttggctggcaatgctgctcgtgagaacaagaagacgagaattattccg 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 247 gaggttctcaagttggctggcaatgctgctcgtgagaacaagaagacgagaattattccg 306 Query: 308 cgtcatctgcaactggccatccggaacgacgaggagttaaacaagctgctctccggcgtc 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 307 cgtcatctgcaactggccatccggaacgacgaggagttaaacaagctgctctccggcgtc 366 Query: 368 acaattgcacaaggtcgtcaatcaaaccgtccttttcaggacgaccaaattattagcaaa 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 367 acaattgcacaaggtcgtcaatcaaaccgtccttttcaggacgaccaaattattagcaaa 426 Query: 428 gaattgaaaaaa 439 |||||||||||| Sbjct: 427 gaattgaaaaaa 438 >His-PsiCR31615-RA feature: pseudogene loc=2L:21374707..21375105;ID=FBan0031615;gene_id=FBgn005 1615;gene_sym=His- PsiCR31615;sym=CR31615;type=pseudogene;scaffold=AE003670 ;len=399 Length = 399 Score = 716 bits (361), Expect = 0.0 Identities = 369/372 (99%) Strand = Plus / Plus Query: 68 atgtctggacgtggaaaaggtggcaaagtgaagggaaaggcaaagtcccgctcaaaccgt 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atgtctggacgtggaaaaggtggcaaagtgaagggaaaggcaaagtcccgctcaaaccgt 60 Query: 128 gccggtcttcaattccctgtgggccgtattcaccgttngttccggaagggcaactacgca 187 ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct: 61 gccggtcttcaattccctgtgggccgtattcaccgtttgctccggaagggcaactacgca 120 Query: 188 gagcgtgttggtgcaggcgctccagtttacctagctgccgtaatggaatatctggccgct 247 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 121 gagcgtgttggtgcaggcgctccagtttacctagctgccgtaatggaatatctagccgct 180 Query: 248 gaggttctcaagttggctggcaatgctgctcgtgagaacaagaagacgagaattattccg 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 gaggttctcaagttggctggcaatgctgctcgtgagaacaagaagacgagaattattccg 240 Query: 308 cgtcatctgcaactggccatccggaacgacgaggagttaaacaagctgctctccggcgtc 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 cgtcatctgcaactggccatccggaacgacgaggagttaaacaagctgctctccggcgtc 300 Query: 368 acaattgcacaaggtcgtcaatcaaaccgtccttttcaggacgaccaaattattagcaaa 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 acaattgcacaaggtcgtcaatcaaaccgtccttttcaggacgaccaaattattagcaaa 360 Query: 428 gaattgaaaaaa 439 |||||||||||| Sbjct: 361 gaattgaaaaaa 372 >His2A:CG31618-RA feature: mRNA loc=2L:21389579..21390160;ID=FBan0031618;gene_id=FBgn005 1618;gene_sym=His2A:CG31618;sym=CG31618;scaffold=AE00367 0;len=582 Length = 582 Score = 589 bits (297), Expect = e-168 Identities = 350/367 (95%), Gaps = 2/367 (0%) Strand = Plus / Plus Query: 18 gcattcgtgttccatgtgtaaagtgaatttattaaaataaatgaaa--caaaatgtctgg 75 ||||||||||||| || |||||||||| | | | ||||||| | || |||||||||||| Sbjct: 1 gcattcgtgttccgtgcgtaaagtgaactaagtgaaataaacgcaaagcaaaatgtctgg 60 Query: 76 acgtggaaaaggtggcaaagtgaagggaaaggcaaagtcccgctcaaaccgtgccggtct 135 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 acgtggaaaaggtggcaaagtgaagggaaaggcaaagtcccgctcaaaccgtgccggtct 120 Query: 136 tcaattccctgtgggccgtattcaccgttngttccggaagggcaactacgcagagcgtgt 195 ||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||| Sbjct: 121 tcaattccctgtgggccgtattcaccgtttgctccggaagggaaactacgcagagcgtgt 180 Query: 196 tggtgcaggcgctccagtttacctagctgccgtaatggaatatctggccgctgaggttct 255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 tggtgcaggcgctccagtttacctagctgccgtaatggaatatctggccgctgaggttct 240 Query: 256 caagttggctggcaatgctgctcgtgagaacaagaagacgagaattattccgcgtcatct 315 | ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 241 cgagttggctggcaatgctgctcgtgacaacaagaagactagaattattccgcgtcatct 300 Query: 316 gcaactggccatccggaacgacgaggagttaaacaagctgctctccggcgtcacaattgc 375 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 gcaactggccatccgcaacgacgaggagttaaacaagctgctctccggcgtcacaattgc 360 Query: 376 acaaggt 382 ||||||| Sbjct: 361 acaaggt 367 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,420 Number of Sequences: 18737 Number of extensions: 10420 Number of successful extensions: 841 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 836 Number of HSP's gapped (non-prelim): 4 length of query: 444 length of database: 41,270,998 effective HSP length: 17 effective length of query: 427 effective length of database: 40,952,469 effective search space: 17486704263 effective search space used: 17486704263 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BF485996|BF485996 AT20116.5prime AT Drosophila melanogaster adult testes pOTB7 Drosophila melanogaster cDNA clone AT20116 5, mRNA sequence. (704 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,314 Number of Sequences: 18737 Number of extensions: 14314 Number of successful extensions: 336 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 336 Number of HSP's gapped (non-prelim): 0 length of query: 704 length of database: 41,270,998 effective HSP length: 17 effective length of query: 687 effective length of database: 40,952,469 effective search space: 28134346203 effective search space used: 28134346203 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG632137|BG632137 GH03983.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH03983 3, mRNA sequence. (554 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,426 Number of Sequences: 18737 Number of extensions: 10426 Number of successful extensions: 189 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 189 Number of HSP's gapped (non-prelim): 0 length of query: 554 length of database: 41,270,998 effective HSP length: 17 effective length of query: 537 effective length of database: 40,952,469 effective search space: 21991475853 effective search space used: 21991475853 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG632206|BG632206 GH05015.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH05015 3 similar to CG17646: FBan0017646 'transporter' located on: 2L 22B2-22B2;: 04/10/2001, mRNA sequence. (784 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG17646-RB feature: mRNA loc=2L:join(1734191..1734319,1743325..1... 1548 0.0 CG17646-RA feature: mRNA loc=2L:join(1739134..1739684,1743325..1... 1548 0.0 >CG17646-RB feature: mRNA loc=2L:join(1734191..1734319,1743325..1743741, 1743808..1743925,1745010..1745205,1745299..1745444, 1746588..1746826,1746886..1747026,1747384..1747694, 1749357..1749525,1750439..1750539,1751183..1751341, 1751407..1752278);ID=FBan0017646;gene_id=FBgn0031362;gene _sym=CG17646;sym=CG17646;scaffold=AE003585;len=2998 Length = 2998 Score = 1548 bits (781), Expect = 0.0 Identities = 783/784 (99%) Strand = Plus / Minus Query: 1 atatgtcatatacaagtaattcgaacttagggctaaaactaaagctaatcactaaagaga 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2941 atatgtcatatacaagtaattcgaacttagggctaaaactaaagctaatcactaaagaga 2882 Query: 61 cgaaacaaattattgatcacaaaagtatctttgtagcggaccttatagaagtagatgaat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2881 cgaaacaaattattgatcacaaaagtatctttgtagcggaccttatagaagtagatgaat 2822 Query: 121 attcaagacttggcatagctggagtcttcgcggagatccagctcagtggatgaagtattg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2821 attcaagacttggcatagctggagtcttcgcggagatccagctcagtggatgaagtattg 2762 Query: 181 tgtttacagggcaagatggaaacggggttatagagattgtgttgcagttgatcttccttt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2761 tgtttacagggcaagatggaaacggggttatagagattgtgttgcagttgatcttccttt 2702 Query: 241 ttggtatatcagcacttaaactggatttaagctaccctaaagccttcttgcgtacaatat 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2701 ttggtatatcagcacttaaactggatttaagctaccctaaagccttcttgcgtacaatat 2642 Query: 301 ttcagagaatatttaaataaatacctaagctaacatcgaatcggtcgatcaattgtaaaa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2641 ttcagagaatatttaaataaatacctaagctaacatcgaatcggtcgatcaattgtaaaa 2582 Query: 361 acacaaaaagggtagtttcgaatttggaacttaaaacgaggagagatggaaagacacccg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2581 acacaaaaagggtagtttcgaatttggaacttaaaacgaggagagatggaaagacacccg 2522 Query: 421 actatgtacaaaaggattgcagccatggaccaaacattggccatggtatcttatcgcttg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2521 actatgtacaaaaggattgcagccatggaccaaacattggccatggtatcttatcgcttg 2462 Query: 481 ttgagcttgtgccacagcgtgatgagggtcagcacatgcatgactccaatcacgatgccc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2461 ttgagcttgtgccacagcgtgatgagggtcagcacatgcatgactccaatcacgatgccc 2402 Query: 541 atgaggatcaggcagtcggacatgtgcacatccgatatcatcatgtacttgagaaagacc 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2401 atgaggatcaggcagtcggacatgtgcacatccgatatcatcatgtacttgagaaagacc 2342 Query: 601 ttcgggctgcggaagtggcaatacatcgcagtctcggggcactccagaaagggtcgatcc 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2341 ttcgggctgcggaagtggcaatacatcgcagtctcggggcactccagaaagggtcgatcc 2282 Query: 661 atgccgtaaatggcgttcaacgccccgtggaatccggnccggaagtaactcaggtgccac 720 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 2281 atgccgtaaatggcgttcaacgccccgtggaatccggcccggaagtaactcaggtgccac 2222 Query: 721 atccatcggaagaggggcgtgatgtcgatgtagcgcgtgcagaatccaaaaacggagaac 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2221 atccatcggaagaggggcgtgatgtcgatgtagcgcgtgcagaatccaaaaacggagaac 2162 Query: 781 atca 784 |||| Sbjct: 2161 atca 2158 >CG17646-RA feature: mRNA loc=2L:join(1739134..1739684,1743325..1743741, 1743808..1743925,1745010..1745205,1745299..1745444, 1746588..1746826,1746886..1747026,1747384..1747694, 1749357..1749525,1750439..1750539,1751183..1751341, 1751407..1752278);ID=FBan0017646;gene_id=FBgn0031362;gene _sym=CG17646;sym=CG17646;scaffold=AE003585;len=3420 Length = 3420 Score = 1548 bits (781), Expect = 0.0 Identities = 783/784 (99%) Strand = Plus / Minus Query: 1 atatgtcatatacaagtaattcgaacttagggctaaaactaaagctaatcactaaagaga 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3363 atatgtcatatacaagtaattcgaacttagggctaaaactaaagctaatcactaaagaga 3304 Query: 61 cgaaacaaattattgatcacaaaagtatctttgtagcggaccttatagaagtagatgaat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3303 cgaaacaaattattgatcacaaaagtatctttgtagcggaccttatagaagtagatgaat 3244 Query: 121 attcaagacttggcatagctggagtcttcgcggagatccagctcagtggatgaagtattg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3243 attcaagacttggcatagctggagtcttcgcggagatccagctcagtggatgaagtattg 3184 Query: 181 tgtttacagggcaagatggaaacggggttatagagattgtgttgcagttgatcttccttt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3183 tgtttacagggcaagatggaaacggggttatagagattgtgttgcagttgatcttccttt 3124 Query: 241 ttggtatatcagcacttaaactggatttaagctaccctaaagccttcttgcgtacaatat 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3123 ttggtatatcagcacttaaactggatttaagctaccctaaagccttcttgcgtacaatat 3064 Query: 301 ttcagagaatatttaaataaatacctaagctaacatcgaatcggtcgatcaattgtaaaa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3063 ttcagagaatatttaaataaatacctaagctaacatcgaatcggtcgatcaattgtaaaa 3004 Query: 361 acacaaaaagggtagtttcgaatttggaacttaaaacgaggagagatggaaagacacccg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3003 acacaaaaagggtagtttcgaatttggaacttaaaacgaggagagatggaaagacacccg 2944 Query: 421 actatgtacaaaaggattgcagccatggaccaaacattggccatggtatcttatcgcttg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2943 actatgtacaaaaggattgcagccatggaccaaacattggccatggtatcttatcgcttg 2884 Query: 481 ttgagcttgtgccacagcgtgatgagggtcagcacatgcatgactccaatcacgatgccc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2883 ttgagcttgtgccacagcgtgatgagggtcagcacatgcatgactccaatcacgatgccc 2824 Query: 541 atgaggatcaggcagtcggacatgtgcacatccgatatcatcatgtacttgagaaagacc 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2823 atgaggatcaggcagtcggacatgtgcacatccgatatcatcatgtacttgagaaagacc 2764 Query: 601 ttcgggctgcggaagtggcaatacatcgcagtctcggggcactccagaaagggtcgatcc 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2763 ttcgggctgcggaagtggcaatacatcgcagtctcggggcactccagaaagggtcgatcc 2704 Query: 661 atgccgtaaatggcgttcaacgccccgtggaatccggnccggaagtaactcaggtgccac 720 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 2703 atgccgtaaatggcgttcaacgccccgtggaatccggcccggaagtaactcaggtgccac 2644 Query: 721 atccatcggaagaggggcgtgatgtcgatgtagcgcgtgcagaatccaaaaacggagaac 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2643 atccatcggaagaggggcgtgatgtcgatgtagcgcgtgcagaatccaaaaacggagaac 2584 Query: 781 atca 784 |||| Sbjct: 2583 atca 2580 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,870 Number of Sequences: 18737 Number of extensions: 15870 Number of successful extensions: 345 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 343 Number of HSP's gapped (non-prelim): 2 length of query: 784 length of database: 41,270,998 effective HSP length: 17 effective length of query: 767 effective length of database: 40,952,469 effective search space: 31410543723 effective search space used: 31410543723 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG632209|BG632209 GH05123.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH05123 3 similar to T-cp1: FBan0005374 'chaperone' located on: 3R 94B4-94B4;: 04/10/2001, mRNA sequence. (478 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value T-cp1-RB feature: mRNA loc=3R:complement(18305463..18306236,1830... 940 0.0 T-cp1-RA feature: mRNA loc=3R:complement(18305463..18306236,1830... 940 0.0 >T-cp1-RB feature: mRNA loc=3R:complement(18305463..18306236,18306300..18307190, 18307246..18307399,18307637..18307729, 18307794..18307809);ID=FBan0005374;gene_id=FBgn0003676;ge ne_sym=T-cp1;sym=CG5374;scaffold=AE003739;len=1928 Length = 1928 Score = 940 bits (474), Expect = 0.0 Identities = 477/478 (99%) Strand = Plus / Minus Query: 1 attctgaagatcagtttattatacattgaagcatggatgagaaaggattgcggatgtgcg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1911 attctgaagatcagtttattatacattgaagcatggatgagaaaggattgcggatgtgcg 1852 Query: 61 gtgttaatacagatcgcgaagggcaacacaattaaattgttgttacaatcaatggggcga 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1851 gtgttaatacagatcgcgaagggcaacacaattaaattgttgttacaatcaatggggcga 1792 Query: 121 caattgaaagtgagtgatttgattaaaattaaatgcctaaacaagatagaagaaatgtgc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1791 caattgaaagtgagtgatttgattaaaattaaatgcctaaacaagatagaagaaatgtgc 1732 Query: 181 ttcgctcgcggtgaagaatgtctaaccgtccagctcgccggcagcgcatgcatcggcgta 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1731 ttcgctcgcggtgaagaatgtctaaccgtccagctcgccggcagcgcatgcatcggcgta 1672 Query: 241 actcttgccgctcttgtcctccggattcagcttgatcatgtcgtcaatacgcaaaatggt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1671 actcttgccgctcttgtcctccggattcagcttgatcatgtcgtcaatacgcaaaatggt 1612 Query: 301 aatggcggcctccgtggcgaacttgagcgacttgatcttggacatggcgggctccaaaac 360 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1611 aatggcggcctccgtggcgaacttcagcgacttgatcttggacatggcgggctccaaaac 1552 Query: 361 tccagccttcttgttgtcccttaccactccctcgatcagatccagaccggtccacttaag 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1551 tccagccttcttgttgtcccttaccactccctcgatcagatccagaccggtccacttaag 1492 Query: 421 atccgaacgctcgggcttcgtctggctggagttgtggtaggagcggagcttggccact 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1491 atccgaacgctcgggcttcgtctggctggagttgtggtaggagcggagcttggccact 1434 >T-cp1-RA feature: mRNA loc=3R:complement(18305463..18306236,18306300..18307190, 18307246..18307399, 18307637..18307809);ID=FBan0005374;gene_id=FBgn0003676;ge ne_sym=T-cp1;sym=CG5374;scaffold=AE003739;len=1992 Length = 1992 Score = 940 bits (474), Expect = 0.0 Identities = 477/478 (99%) Strand = Plus / Minus Query: 1 attctgaagatcagtttattatacattgaagcatggatgagaaaggattgcggatgtgcg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1975 attctgaagatcagtttattatacattgaagcatggatgagaaaggattgcggatgtgcg 1916 Query: 61 gtgttaatacagatcgcgaagggcaacacaattaaattgttgttacaatcaatggggcga 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1915 gtgttaatacagatcgcgaagggcaacacaattaaattgttgttacaatcaatggggcga 1856 Query: 121 caattgaaagtgagtgatttgattaaaattaaatgcctaaacaagatagaagaaatgtgc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1855 caattgaaagtgagtgatttgattaaaattaaatgcctaaacaagatagaagaaatgtgc 1796 Query: 181 ttcgctcgcggtgaagaatgtctaaccgtccagctcgccggcagcgcatgcatcggcgta 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1795 ttcgctcgcggtgaagaatgtctaaccgtccagctcgccggcagcgcatgcatcggcgta 1736 Query: 241 actcttgccgctcttgtcctccggattcagcttgatcatgtcgtcaatacgcaaaatggt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1735 actcttgccgctcttgtcctccggattcagcttgatcatgtcgtcaatacgcaaaatggt 1676 Query: 301 aatggcggcctccgtggcgaacttgagcgacttgatcttggacatggcgggctccaaaac 360 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1675 aatggcggcctccgtggcgaacttcagcgacttgatcttggacatggcgggctccaaaac 1616 Query: 361 tccagccttcttgttgtcccttaccactccctcgatcagatccagaccggtccacttaag 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1615 tccagccttcttgttgtcccttaccactccctcgatcagatccagaccggtccacttaag 1556 Query: 421 atccgaacgctcgggcttcgtctggctggagttgtggtaggagcggagcttggccact 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1555 atccgaacgctcgggcttcgtctggctggagttgtggtaggagcggagcttggccact 1498 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,647 Number of Sequences: 18737 Number of extensions: 10647 Number of successful extensions: 253 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 251 Number of HSP's gapped (non-prelim): 2 length of query: 478 length of database: 41,270,998 effective HSP length: 17 effective length of query: 461 effective length of database: 40,952,469 effective search space: 18879088209 effective search space used: 18879088209 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG632280|BG632280 GH06087.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH06087 3, mRNA sequence. (569 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,384 Number of Sequences: 18737 Number of extensions: 16384 Number of successful extensions: 695 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 695 Number of HSP's gapped (non-prelim): 0 length of query: 569 length of database: 41,270,998 effective HSP length: 17 effective length of query: 552 effective length of database: 40,952,469 effective search space: 22605762888 effective search space used: 22605762888 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG632302|BG632302 GH06341.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH06341 3 similar to CG11711: FBan0011711 located on: 3L 68C5-68C7;: 04/10/2001, mRNA sequence. (462 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,458 Number of Sequences: 18737 Number of extensions: 11458 Number of successful extensions: 714 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 714 Number of HSP's gapped (non-prelim): 0 length of query: 462 length of database: 41,270,998 effective HSP length: 17 effective length of query: 445 effective length of database: 40,952,469 effective search space: 18223848705 effective search space used: 18223848705 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG632346|BG632346 GH06752.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH06752 3 similar to mfas: FBan0003359 'signal transduction' located on: 3R 87A8-87A9;: 04/10/2001, mRNA sequence. (735 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value mfas-RP feature: mRNA loc=3R:complement(7810602..7811227,7811289... 1449 0.0 mfas-RO feature: mRNA loc=3R:complement(7810602..7811227,7811289... 1449 0.0 mfas-RN feature: mRNA loc=3R:complement(7810602..7811227,7811289... 1449 0.0 mfas-RM feature: mRNA loc=3R:complement(7810602..7811227,7811289... 1449 0.0 mfas-RL feature: mRNA loc=3R:complement(7810602..7811227,7811289... 1449 0.0 mfas-RK feature: mRNA loc=3R:complement(7810602..7811227,7811289... 1449 0.0 mfas-RJ feature: mRNA loc=3R:complement(7810602..7811227,7811289... 1449 0.0 mfas-RI feature: mRNA loc=3R:complement(7810602..7811227,7811289... 1449 0.0 mfas-RH feature: mRNA loc=3R:complement(7810602..7811227,7811289... 1449 0.0 mfas-RG feature: mRNA loc=3R:complement(7810602..7811227,7811289... 1449 0.0 mfas-RF feature: mRNA loc=3R:complement(7810602..7811227,7811289... 1449 0.0 mfas-RE feature: mRNA loc=3R:complement(7810602..7811227,7811289... 1449 0.0 mfas-RD feature: mRNA loc=3R:complement(7810602..7811227,7811289... 1449 0.0 mfas-RC feature: mRNA loc=3R:complement(7810602..7811227,7811289... 1449 0.0 mfas-RB feature: mRNA loc=3R:complement(7810602..7811227,7811289... 1449 0.0 >mfas-RP feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815068,7818482..7818614, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2717 Length = 2717 Score = 1449 bits (731), Expect = 0.0 Identities = 734/735 (99%) Strand = Plus / Minus Query: 1 gttttaatactatttattttatttatgagaggagattctgagctttttgcggcttccaat 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2717 gttttaatactatttattttatttatcagaggagattctgagctttttgcggcttccaat 2658 Query: 61 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2657 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 2598 Query: 121 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2597 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 2538 Query: 181 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2537 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 2478 Query: 241 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2477 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 2418 Query: 301 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2417 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 2358 Query: 361 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2357 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 2298 Query: 421 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2297 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 2238 Query: 481 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2237 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 2178 Query: 541 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2177 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 2118 Query: 601 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2117 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 2058 Query: 661 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2057 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 1998 Query: 721 gcccggttcatcacg 735 ||||||||||||||| Sbjct: 1997 gcccggttcatcacg 1983 >mfas-RO feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815065,7817812..7817883, 7818482..7818592, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2764 Length = 2764 Score = 1449 bits (731), Expect = 0.0 Identities = 734/735 (99%) Strand = Plus / Minus Query: 1 gttttaatactatttattttatttatgagaggagattctgagctttttgcggcttccaat 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2764 gttttaatactatttattttatttatcagaggagattctgagctttttgcggcttccaat 2705 Query: 61 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2704 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 2645 Query: 121 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2644 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 2585 Query: 181 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2584 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 2525 Query: 241 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2524 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 2465 Query: 301 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2464 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 2405 Query: 361 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2404 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 2345 Query: 421 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2344 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 2285 Query: 481 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2284 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 2225 Query: 541 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2224 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 2165 Query: 601 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2164 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 2105 Query: 661 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2104 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 2045 Query: 721 gcccggttcatcacg 735 ||||||||||||||| Sbjct: 2044 gcccggttcatcacg 2030 >mfas-RN feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815065,7818482..7818592, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2692 Length = 2692 Score = 1449 bits (731), Expect = 0.0 Identities = 734/735 (99%) Strand = Plus / Minus Query: 1 gttttaatactatttattttatttatgagaggagattctgagctttttgcggcttccaat 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2692 gttttaatactatttattttatttatcagaggagattctgagctttttgcggcttccaat 2633 Query: 61 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2632 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 2573 Query: 121 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2572 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 2513 Query: 181 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2512 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 2453 Query: 241 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2452 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 2393 Query: 301 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2392 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 2333 Query: 361 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2332 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 2273 Query: 421 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2272 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 2213 Query: 481 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2212 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 2153 Query: 541 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2152 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 2093 Query: 601 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2092 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 2033 Query: 661 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2032 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 1973 Query: 721 gcccggttcatcacg 735 ||||||||||||||| Sbjct: 1972 gcccggttcatcacg 1958 >mfas-RM feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815068,7817812..7817883, 7818482..7818614, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2789 Length = 2789 Score = 1449 bits (731), Expect = 0.0 Identities = 734/735 (99%) Strand = Plus / Minus Query: 1 gttttaatactatttattttatttatgagaggagattctgagctttttgcggcttccaat 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2789 gttttaatactatttattttatttatcagaggagattctgagctttttgcggcttccaat 2730 Query: 61 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2729 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 2670 Query: 121 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2669 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 2610 Query: 181 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2609 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 2550 Query: 241 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2549 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 2490 Query: 301 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2489 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 2430 Query: 361 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2429 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 2370 Query: 421 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2369 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 2310 Query: 481 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2309 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 2250 Query: 541 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2249 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 2190 Query: 601 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2189 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 2130 Query: 661 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2129 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 2070 Query: 721 gcccggttcatcacg 735 ||||||||||||||| Sbjct: 2069 gcccggttcatcacg 2055 >mfas-RL feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815068,7818482..7818592, 7818872..7819014);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2771 Length = 2771 Score = 1449 bits (731), Expect = 0.0 Identities = 734/735 (99%) Strand = Plus / Minus Query: 1 gttttaatactatttattttatttatgagaggagattctgagctttttgcggcttccaat 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2771 gttttaatactatttattttatttatcagaggagattctgagctttttgcggcttccaat 2712 Query: 61 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2711 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 2652 Query: 121 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2651 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 2592 Query: 181 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2591 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 2532 Query: 241 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2531 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 2472 Query: 301 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2471 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 2412 Query: 361 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2411 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 2352 Query: 421 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2351 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 2292 Query: 481 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2291 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 2232 Query: 541 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2231 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 2172 Query: 601 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2171 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 2112 Query: 661 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2111 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 2052 Query: 721 gcccggttcatcacg 735 ||||||||||||||| Sbjct: 2051 gcccggttcatcacg 2037 >mfas-RK feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815263,7818482..7818614, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2912 Length = 2912 Score = 1449 bits (731), Expect = 0.0 Identities = 734/735 (99%) Strand = Plus / Minus Query: 1 gttttaatactatttattttatttatgagaggagattctgagctttttgcggcttccaat 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2912 gttttaatactatttattttatttatcagaggagattctgagctttttgcggcttccaat 2853 Query: 61 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2852 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 2793 Query: 121 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2792 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 2733 Query: 181 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2732 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 2673 Query: 241 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2672 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 2613 Query: 301 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2612 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 2553 Query: 361 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2552 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 2493 Query: 421 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2492 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 2433 Query: 481 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2432 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 2373 Query: 541 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2372 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 2313 Query: 601 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2312 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 2253 Query: 661 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2252 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 2193 Query: 721 gcccggttcatcacg 735 ||||||||||||||| Sbjct: 2192 gcccggttcatcacg 2178 >mfas-RJ feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815263,7817812..7817883, 7818482..7818592, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2962 Length = 2962 Score = 1449 bits (731), Expect = 0.0 Identities = 734/735 (99%) Strand = Plus / Minus Query: 1 gttttaatactatttattttatttatgagaggagattctgagctttttgcggcttccaat 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2962 gttttaatactatttattttatttatcagaggagattctgagctttttgcggcttccaat 2903 Query: 61 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2902 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 2843 Query: 121 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2842 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 2783 Query: 181 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2782 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 2723 Query: 241 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2722 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 2663 Query: 301 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2662 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 2603 Query: 361 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2602 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 2543 Query: 421 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2542 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 2483 Query: 481 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2482 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 2423 Query: 541 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2422 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 2363 Query: 601 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2362 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 2303 Query: 661 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2302 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 2243 Query: 721 gcccggttcatcacg 735 ||||||||||||||| Sbjct: 2242 gcccggttcatcacg 2228 >mfas-RI feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815263,7818482..7818592, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2890 Length = 2890 Score = 1449 bits (731), Expect = 0.0 Identities = 734/735 (99%) Strand = Plus / Minus Query: 1 gttttaatactatttattttatttatgagaggagattctgagctttttgcggcttccaat 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2890 gttttaatactatttattttatttatcagaggagattctgagctttttgcggcttccaat 2831 Query: 61 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2830 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 2771 Query: 121 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2770 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 2711 Query: 181 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2710 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 2651 Query: 241 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2650 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 2591 Query: 301 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2590 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 2531 Query: 361 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2530 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 2471 Query: 421 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2470 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 2411 Query: 481 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2410 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 2351 Query: 541 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2350 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 2291 Query: 601 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2290 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 2231 Query: 661 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2230 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 2171 Query: 721 gcccggttcatcacg 735 ||||||||||||||| Sbjct: 2170 gcccggttcatcacg 2156 >mfas-RH feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815065,7818482..7818614, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2714 Length = 2714 Score = 1449 bits (731), Expect = 0.0 Identities = 734/735 (99%) Strand = Plus / Minus Query: 1 gttttaatactatttattttatttatgagaggagattctgagctttttgcggcttccaat 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2714 gttttaatactatttattttatttatcagaggagattctgagctttttgcggcttccaat 2655 Query: 61 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2654 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 2595 Query: 121 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2594 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 2535 Query: 181 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2534 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 2475 Query: 241 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2474 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 2415 Query: 301 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2414 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 2355 Query: 361 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2354 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 2295 Query: 421 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2294 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 2235 Query: 481 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2234 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 2175 Query: 541 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2174 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 2115 Query: 601 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2114 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 2055 Query: 661 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2054 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 1995 Query: 721 gcccggttcatcacg 735 ||||||||||||||| Sbjct: 1994 gcccggttcatcacg 1980 >mfas-RG feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815068,7817812..7817883, 7818482..7818592, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2767 Length = 2767 Score = 1449 bits (731), Expect = 0.0 Identities = 734/735 (99%) Strand = Plus / Minus Query: 1 gttttaatactatttattttatttatgagaggagattctgagctttttgcggcttccaat 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2767 gttttaatactatttattttatttatcagaggagattctgagctttttgcggcttccaat 2708 Query: 61 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2707 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 2648 Query: 121 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2647 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 2588 Query: 181 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2587 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 2528 Query: 241 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2527 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 2468 Query: 301 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2467 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 2408 Query: 361 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2407 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 2348 Query: 421 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2347 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 2288 Query: 481 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2287 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 2228 Query: 541 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2227 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 2168 Query: 601 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2167 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 2108 Query: 661 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2107 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 2048 Query: 721 gcccggttcatcacg 735 ||||||||||||||| Sbjct: 2047 gcccggttcatcacg 2033 >mfas-RF feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815068,7817812..7817883, 7818482..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=3163 Length = 3163 Score = 1449 bits (731), Expect = 0.0 Identities = 734/735 (99%) Strand = Plus / Minus Query: 1 gttttaatactatttattttatttatgagaggagattctgagctttttgcggcttccaat 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 3163 gttttaatactatttattttatttatcagaggagattctgagctttttgcggcttccaat 3104 Query: 61 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3103 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 3044 Query: 121 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3043 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 2984 Query: 181 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2983 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 2924 Query: 241 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2923 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 2864 Query: 301 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2863 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 2804 Query: 361 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2803 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 2744 Query: 421 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2743 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 2684 Query: 481 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2683 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 2624 Query: 541 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2623 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 2564 Query: 601 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2563 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 2504 Query: 661 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2503 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 2444 Query: 721 gcccggttcatcacg 735 ||||||||||||||| Sbjct: 2443 gcccggttcatcacg 2429 >mfas-RE feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815065,7817812..7817883, 7818482..7818614, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2786 Length = 2786 Score = 1449 bits (731), Expect = 0.0 Identities = 734/735 (99%) Strand = Plus / Minus Query: 1 gttttaatactatttattttatttatgagaggagattctgagctttttgcggcttccaat 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2786 gttttaatactatttattttatttatcagaggagattctgagctttttgcggcttccaat 2727 Query: 61 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2726 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 2667 Query: 121 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2666 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 2607 Query: 181 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2606 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 2547 Query: 241 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2546 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 2487 Query: 301 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2486 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 2427 Query: 361 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2426 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 2367 Query: 421 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2366 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 2307 Query: 481 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2306 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 2247 Query: 541 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2246 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 2187 Query: 601 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2186 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 2127 Query: 661 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2126 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 2067 Query: 721 gcccggttcatcacg 735 ||||||||||||||| Sbjct: 2066 gcccggttcatcacg 2052 >mfas-RD feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815068, 7818482..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=3091 Length = 3091 Score = 1449 bits (731), Expect = 0.0 Identities = 734/735 (99%) Strand = Plus / Minus Query: 1 gttttaatactatttattttatttatgagaggagattctgagctttttgcggcttccaat 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 3091 gttttaatactatttattttatttatcagaggagattctgagctttttgcggcttccaat 3032 Query: 61 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3031 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 2972 Query: 121 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2971 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 2912 Query: 181 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2911 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 2852 Query: 241 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2851 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 2792 Query: 301 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2791 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 2732 Query: 361 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2731 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 2672 Query: 421 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2671 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 2612 Query: 481 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2611 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 2552 Query: 541 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2551 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 2492 Query: 601 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2491 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 2432 Query: 661 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2431 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 2372 Query: 721 gcccggttcatcacg 735 ||||||||||||||| Sbjct: 2371 gcccggttcatcacg 2357 >mfas-RC feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815263,7818482..7818592, 7818872..7819014);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2966 Length = 2966 Score = 1449 bits (731), Expect = 0.0 Identities = 734/735 (99%) Strand = Plus / Minus Query: 1 gttttaatactatttattttatttatgagaggagattctgagctttttgcggcttccaat 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2966 gttttaatactatttattttatttatcagaggagattctgagctttttgcggcttccaat 2907 Query: 61 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2906 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 2847 Query: 121 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2846 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 2787 Query: 181 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2786 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 2727 Query: 241 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2726 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 2667 Query: 301 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2666 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 2607 Query: 361 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2606 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 2547 Query: 421 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2546 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 2487 Query: 481 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2486 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 2427 Query: 541 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2426 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 2367 Query: 601 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2366 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 2307 Query: 661 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2306 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 2247 Query: 721 gcccggttcatcacg 735 ||||||||||||||| Sbjct: 2246 gcccggttcatcacg 2232 >mfas-RB feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815068,7818482..7818592, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2695 Length = 2695 Score = 1449 bits (731), Expect = 0.0 Identities = 734/735 (99%) Strand = Plus / Minus Query: 1 gttttaatactatttattttatttatgagaggagattctgagctttttgcggcttccaat 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2695 gttttaatactatttattttatttatcagaggagattctgagctttttgcggcttccaat 2636 Query: 61 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2635 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 2576 Query: 121 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2575 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 2516 Query: 181 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2515 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 2456 Query: 241 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2455 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 2396 Query: 301 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2395 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 2336 Query: 361 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2335 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 2276 Query: 421 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2275 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 2216 Query: 481 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2215 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 2156 Query: 541 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2155 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 2096 Query: 601 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2095 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 2036 Query: 661 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2035 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 1976 Query: 721 gcccggttcatcacg 735 ||||||||||||||| Sbjct: 1975 gcccggttcatcacg 1961 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 27,997 Number of Sequences: 18737 Number of extensions: 27997 Number of successful extensions: 916 Number of sequences better than 1.0e-100: 15 Number of HSP's better than 0.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 901 Number of HSP's gapped (non-prelim): 15 length of query: 735 length of database: 41,270,998 effective HSP length: 17 effective length of query: 718 effective length of database: 40,952,469 effective search space: 29403872742 effective search space used: 29403872742 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG632449|BG632449 GH08762.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH08762 3, mRNA sequence. (674 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,191 Number of Sequences: 18737 Number of extensions: 15191 Number of successful extensions: 251 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 251 Number of HSP's gapped (non-prelim): 0 length of query: 674 length of database: 41,270,998 effective HSP length: 17 effective length of query: 657 effective length of database: 40,952,469 effective search space: 26905772133 effective search space used: 26905772133 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG632467|BG632467 GH09055.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH09055 3 similar to CG4408: FBan0004408 'carboxypeptidase A' located on: 3R 94F1-94F1;: 04/10/2001, mRNA sequence. (829 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG4408-RA feature: mRNA loc=3R:complement(19178268..19180417);ID... 1612 0.0 >CG4408-RA feature: mRNA loc=3R:complement(19178268..19180417);ID=FBan0004408;gene _id=FBgn0039073;gene_sym=CG4408;sym=CG4408;scaffold=AE003 743;len=2150 Length = 2150 Score = 1612 bits (813), Expect = 0.0 Identities = 825/829 (99%) Strand = Plus / Minus Query: 1 aaggttgttcgagtctgactatatttgctttgatttaccaacattattatgaggttttgt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2150 aaggttgttcgagtctgactatatttgctttgatttaccaacattattatgaggttttgt 2091 Query: 61 gtcatgattttgccatcattatttagcattaagaaacgatggcgcgtaatgtgtttttca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2090 gtcatgattttgccatcattatttagcattaagaaacgatggcgcgtaatgtgtttttca 2031 Query: 121 tgtgaactgccatggccagacgacatttatgatcatcatacccatcagatggtgggtgca 180 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 2030 tgtgaactgccatggccagacgacatttatcatcatcatacccatcagatggtgggtgca 1971 Query: 181 tggatgcggattcggaatcggatttgtagttgatggtggaatttcagttagagccggagc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1970 tggatgcggattcggaatcggatttgtagttgatggtggaatttcagttagagccggagc 1911 Query: 241 ccctgatcattggtaatagccacgtttgcctgcctcctgcacgatcgtttggatggatgc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1910 ccctgatcattggtaatagccacgtttgcctgcctcctgcacgatcgtttggatggatgc 1851 Query: 301 gaaggcctcggcagcggtgggttcgatttccttggcggacaaaatgaacagatcctcgct 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1850 gaaggcctcggcagcggtgggttcgatttccttggcggacaaaatgaacagatcctcgct 1791 Query: 361 gtcagcgggtccacgcagttcgtaggagaaggtaatcggtatcttgagctgaccatgggc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1790 gtcagcgggtccacgcagttcgtaggagaaggtaatcggtatcttgagctgaccatgggc 1731 Query: 421 ccaatcctttgagccacctgatgagggatatatggtctcgtagatgctgccactcttgta 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1730 ccaatcctttgagccacctgatgagggatatatggtctcgtagatgctgccactcttgta 1671 Query: 481 gatcctgccgcttacatcctttatcttattggccgccagcttaccaatatcagtcagatc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1670 gatcctgccgcttacatcctttatcttattggccgccagcttaccaatatcagtcagatc 1611 Query: 541 gtgatagttgtccacacgttcggcactgtgtccgtagggaaacatgatcatctgggagta 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1610 gtgatagttgtccacacgttcggcactgtgtccgtagggaaacatgatcatctgggagta 1551 Query: 601 gctgtgcagcgatataaaggtacgtatgcgctcgctttcgacgcgatgccttatgaactc 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1550 gctgtgcagcgatataaaggtacgtatgcgctcgctttcgacgcgatgccttatgaactc 1491 Query: 661 gatcatccgttgggtttccacctcactggcagccgatggtcccgagtagtcatagcggca 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1490 gatcatccgttgggtttccacctcactggcagccgatggtcccgagtagtcatagcggca 1431 Query: 721 aggatctccactggctccggtgacgttccagtggaatggaaagttccggttgagagtcac 780 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 1430 aggatctccactggctccggtgacgttccagtggaatggaaagttccggttgagatccac 1371 Query: 781 accacggcaaatgccacagagagcacgatttttgcgccacatgcgatcg 829 |||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1370 accacggcaaatgccaaagagagcacgatttttgcgccacatgcgatcg 1322 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 17,582 Number of Sequences: 18737 Number of extensions: 17582 Number of successful extensions: 368 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 367 Number of HSP's gapped (non-prelim): 1 length of query: 829 length of database: 41,270,998 effective HSP length: 17 effective length of query: 812 effective length of database: 40,952,469 effective search space: 33253404828 effective search space used: 33253404828 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG632482|BG632482 GH09377.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH09377 3, mRNA sequence. (322 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG3239-RB feature: mRNA loc=X:complement(5234654..5236386,523660... 624 e-179 CG3239-RA feature: mRNA loc=X:complement(5234654..5236386,523645... 624 e-179 >CG3239-RB feature: mRNA loc=X:complement(5234654..5236386, 5236606..5236663);ID=FBan0003239;gene_id=FBgn0029769;gene _sym=CG3239;sym=CG3239;scaffold=AE003434;len=1791 Length = 1791 Score = 624 bits (315), Expect = e-179 Identities = 322/323 (99%), Gaps = 1/323 (0%) Strand = Plus / Minus Query: 1 ggtgtgtaaa-attcgtaagtatattaggagaataaattgcaatttattcatcaatcgtt 59 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1772 ggtgtgtaaacattcgtaagtatattaggagaataaattgcaatttattcatcaatcgtt 1713 Query: 60 ctaaaagttcgttgatccaggcatttgctaatacaatcgacactgccttcgcctgggcga 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1712 ctaaaagttcgttgatccaggcatttgctaatacaatcgacactgccttcgcctgggcga 1653 Query: 120 ggggccacaggagaaggcctcccgaaatggctcaaagtgggcaactgcatcgttgaccct 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1652 ggggccacaggagaaggcctcccgaaatggctcaaagtgggcaactgcatcgttgaccct 1593 Query: 180 cttcctatcgctgccatgatcgtgcgcctgcaagagctccttatcggagcagaagaattg 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1592 cttcctatcgctgccatgatcgtgcgcctgcaagagctccttatcggagcagaagaattg 1533 Query: 240 ggcaaagttatgaaagaactgctgcttctgagtgaccaactcctcggcacttcgattccg 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1532 ggcaaagttatgaaagaactgctgcttctgagtgaccaactcctcggcacttcgattccg 1473 Query: 300 cttatgatccgtttgtgcggtgt 322 ||||||||||||||||||||||| Sbjct: 1472 cttatgatccgtttgtgcggtgt 1450 >CG3239-RA feature: mRNA loc=X:complement(5234654..5236386, 5236451..5236644);ID=FBan0003239;gene_id=FBgn0029769;gene _sym=CG3239;sym=CG3239;scaffold=AE003434;len=1927 Length = 1927 Score = 624 bits (315), Expect = e-179 Identities = 322/323 (99%), Gaps = 1/323 (0%) Strand = Plus / Minus Query: 1 ggtgtgtaaa-attcgtaagtatattaggagaataaattgcaatttattcatcaatcgtt 59 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1908 ggtgtgtaaacattcgtaagtatattaggagaataaattgcaatttattcatcaatcgtt 1849 Query: 60 ctaaaagttcgttgatccaggcatttgctaatacaatcgacactgccttcgcctgggcga 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1848 ctaaaagttcgttgatccaggcatttgctaatacaatcgacactgccttcgcctgggcga 1789 Query: 120 ggggccacaggagaaggcctcccgaaatggctcaaagtgggcaactgcatcgttgaccct 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1788 ggggccacaggagaaggcctcccgaaatggctcaaagtgggcaactgcatcgttgaccct 1729 Query: 180 cttcctatcgctgccatgatcgtgcgcctgcaagagctccttatcggagcagaagaattg 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1728 cttcctatcgctgccatgatcgtgcgcctgcaagagctccttatcggagcagaagaattg 1669 Query: 240 ggcaaagttatgaaagaactgctgcttctgagtgaccaactcctcggcacttcgattccg 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1668 ggcaaagttatgaaagaactgctgcttctgagtgaccaactcctcggcacttcgattccg 1609 Query: 300 cttatgatccgtttgtgcggtgt 322 ||||||||||||||||||||||| Sbjct: 1608 cttatgatccgtttgtgcggtgt 1586 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7914 Number of Sequences: 18737 Number of extensions: 7914 Number of successful extensions: 532 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 528 Number of HSP's gapped (non-prelim): 4 length of query: 322 length of database: 41,270,998 effective HSP length: 16 effective length of query: 306 effective length of database: 40,971,206 effective search space: 12537189036 effective search space used: 12537189036 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG632553|BG632553 GH10483.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH10483 3 similar to Cyp28a5: FBan0008864 'cytochrome P450' located on: 2L 34E2-34E2;: 04/10/2001, mRNA sequence. (693 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Cyp28a5-RA feature: mRNA loc=2L:join(13959455..13959699,13959844... 1374 0.0 >Cyp28a5-RA feature: mRNA loc=2L:join(13959455..13959699,13959844..13960090, 13960155..13960259,13960347..13960893,13960960..13961226, 13961368..13961725);ID=FBan0008864;gene_id=FBgn0028940;ge ne_sym=Cyp28a5;sym=CG8864;scaffold=AE003642;len=1769 Length = 1769 Score = 1374 bits (693), Expect = 0.0 Identities = 693/693 (100%) Strand = Plus / Minus Query: 1 atatacgaaatatatttaatatagaaacaacaaatatacatatgcaataacaaagtcagc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1765 atatacgaaatatatttaatatagaaacaacaaatatacatatgcaataacaaagtcagc 1706 Query: 61 caattgcgagcttaagtgtaccactgggtatacatatcaaatattctgtaaaaatagact 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1705 caattgcgagcttaagtgtaccactgggtatacatatcaaatattctgtaaaaatagact 1646 Query: 121 ggggaactacgccactcaattttcacattagtttccgtcgctggtggggagttattaagt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1645 ggggaactacgccactcaattttcacattagtttccgtcgctggtggggagttattaagt 1586 Query: 181 aattgaatctctaaagcttttcaaggtcgagccaaatgcccccacgcagaccagtgataa 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1585 aattgaatctctaaagcttttcaaggtcgagccaaatgcccccacgcagaccagtgataa 1526 Query: 241 tttggccgggttcataatcattgtctttgcgggttttgtcattgatcttgacattgaact 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1525 tttggccgggttcataatcattgtctttgcgggttttgtcattgatcttgacattgaact 1466 Query: 301 ttgatatcagttccacaatagcagccttaatctggaccgtcgcaaatcgcattccaatgc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1465 ttgatatcagttccacaatagcagccttaatctggaccgtcgcaaatcgcattccaatgc 1406 Query: 361 acacacgcggtccatccccgaatcccatgaagacaccccgttccctaaatgtttttgcag 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1405 acacacgcggtccatccccgaatcccatgaagacaccccgttccctaaatgtttttgcag 1346 Query: 421 catctggctccaggaatcgctcgggctggaaggactggggattgggaaagaattcctcat 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1345 catctggctccaggaatcgctcgggctggaaggactggggattgggaaagaattcctcat 1286 Query: 481 ccagcatgaagcagtagtgaggtacaaccacagtggtgcccttctccacgacgaagttgg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1285 ccagcatgaagcagtagtgaggtacaaccacagtggtgcccttctccacgacgaagttgg 1226 Query: 541 gaccttccttgttgggaatctcgatggattcggtgcacagtttattcgacataaatccgg 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1225 gaccttccttgttgggaatctcgatggattcggtgcacagtttattcgacataaatccgg 1166 Query: 601 gcgggaagagtcggatggtttcctgcacacaagcgtccaggtagggcaaatcgctaagct 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1165 gcgggaagagtcggatggtttcctgcacacaagcgtccaggtagggcaaatcgctaagct 1106 Query: 661 tttcaaaggcaatggtgccatcctgcagatggg 693 ||||||||||||||||||||||||||||||||| Sbjct: 1105 tttcaaaggcaatggtgccatcctgcagatggg 1073 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,976 Number of Sequences: 18737 Number of extensions: 14976 Number of successful extensions: 321 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 320 Number of HSP's gapped (non-prelim): 1 length of query: 693 length of database: 41,270,998 effective HSP length: 17 effective length of query: 676 effective length of database: 40,952,469 effective search space: 27683869044 effective search space used: 27683869044 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG632558|BG632558 GH10550.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH10550 3 similar to Acon: FBan0009244 'enzyme' located on: 2L 39B3-39B4;: 04/10/2001, mRNA sequence. (589 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Acon-RB feature: mRNA loc=2L:join(21138100..21138548,21139935..2... 1168 0.0 >Acon-RB feature: mRNA loc=2L:join(21138100..21138548,21139935..21141572, 21141639..21142142, 21142204..21142768);ID=FBan0009244;gene_id=FBgn0010100;ge ne_sym=Acon;sym=CG9244;scaffold=AE003669;len=3156 Length = 3156 Score = 1168 bits (589), Expect = 0.0 Identities = 589/589 (100%) Strand = Plus / Minus Query: 1 aatacatattacttgagttttattcgcacttaaaacagtttcatagtagaggcaatctgt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3149 aatacatattacttgagttttattcgcacttaaaacagtttcatagtagaggcaatctgt 3090 Query: 61 agagcatttggacaaattcaaaaagaacaaaaattgaaggaaacgcatgcatagccagaa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3089 agagcatttggacaaattcaaaaagaacaaaaattgaaggaaacgcatgcatagccagaa 3030 Query: 121 ttaaaaataaaattgtgtataattatatatataaaactcttacaatttctcgctatcgtt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3029 ttaaaaataaaattgtgtataattatatatataaaactcttacaatttctcgctatcgtt 2970 Query: 181 cggctacataattcacttttaaagctgcacactcgatatagtcaaaatataatataaaca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2969 cggctacataattcacttttaaagctgcacactcgatatagtcaaaatataatataaaca 2910 Query: 241 atttgaaaagaattgaataacaataccataattcgattgcttccgttgtgaatttgagtg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2909 atttgaaaagaattgaataacaataccataattcgattgcttccgttgtgaatttgagtg 2850 Query: 301 tgttcacctacaggaagaaggttgggatcaggcttcttgactgggtgtcttaagtaggtc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2849 tgttcacctacaggaagaaggttgggatcaggcttcttgactgggtgtcttaagtaggtc 2790 Query: 361 caggaccatttactgggccagctccttcatgcggttgagagcgctgccggccttgaacca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2789 caggaccatttactgggccagctccttcatgcggttgagagcgctgccggccttgaacca 2730 Query: 421 gccgatctgtaggtcgttcagggtgtggttaagcttgatcctctcgaccttgtcgccatt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2729 gccgatctgtaggtcgttcagggtgtggttaagcttgatcctctcgaccttgtcgccatt 2670 Query: 481 cttgatttcggcatctacgggctttccaggcgcaagggatttcaggttgagcagggagat 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2669 cttgatttcggcatctacgggctttccaggcgcaagggatttcaggttgagcagggagat 2610 Query: 541 tttgctcgtgggctggatcttatcgtaatcagcgggattggcgaaggtg 589 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2609 tttgctcgtgggctggatcttatcgtaatcagcgggattggcgaaggtg 2561 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,645 Number of Sequences: 18737 Number of extensions: 15645 Number of successful extensions: 463 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 462 Number of HSP's gapped (non-prelim): 1 length of query: 589 length of database: 41,270,998 effective HSP length: 17 effective length of query: 572 effective length of database: 40,952,469 effective search space: 23424812268 effective search space used: 23424812268 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG632702|BG632702 GH12586.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH12586 3 similar to Gapdh2: FBan0008893 located on: X 13F6-13F6;: 04/10/2001, mRNA sequence. (481 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Gapdh1-RA feature: mRNA loc=2R:complement(2852799..2854281);ID=F... 906 0.0 >Gapdh1-RA feature: mRNA loc=2R:complement(2852799..2854281);ID=FBan0012055;gene_i d=FBgn0001091;gene_sym=Gapdh1;sym=CG12055;scaffold=AE0038 39;len=1483 Length = 1483 Score = 906 bits (457), Expect = 0.0 Identities = 473/481 (98%) Strand = Plus / Minus Query: 1 acagtaacagggcgatactttattcaacaacaataaatatgtagctttgcgtaattatgg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1432 acagtaacagggcgatactttattcaacaacaataaatatgtagctttgcgtaattatgg 1373 Query: 61 ctattttgtgcatttgnnnnnnnngcatcctcaattgcgccccttgcggattatgcaaca 120 |||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 1372 ctattttgtgcatttgaaaaaaaagcatcctcaattgcgccccttgcggattatgcaaca 1313 Query: 121 gtgattcccgaccagctgctgggcgccgggtttgtacgatagttttggctagtttagtcc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1312 gtgattcccgaccagctgctgggcgccgggtttgtacgatagttttggctagtttagtcc 1253 Query: 181 ttgctctgcatatacttgatcaggtcgatgacgcggttggagtaaccgaactcgttgtcg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1252 ttgctctgcatatacttgatcaggtcgatgacgcggttggagtaaccgaactcgttgtcg 1193 Query: 241 taccacgagattagcttgacgaacttatcgttcagcgaaatgccagccttggcgtcgaac 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1192 taccacgagattagcttgacgaacttatcgttcagcgaaatgccagccttggcgtcgaac 1133 Query: 301 acagacgaatgggtgtcgctgaagaagtcggtggagaccacctcctcatcggtgtagccc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1132 acagacgaatgggtgtcgctgaagaagtcggtggagaccacctcctcatcggtgtagccc 1073 Query: 361 aggattcccttcaggggtcccttggaggcctcctcgaccttagccttgatttcgtcatag 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1072 aggattcccttcaggggtcccttggaggcctcctcgaccttagccttgatttcgtcatag 1013 Query: 421 gtggctcccttgcccaagcggacggtaagatccacaacggagacattgggcgtgggcacg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1012 gtggctcccttgcccaagcggacggtaagatccacaacggagacattgggcgtgggcacg 953 Query: 481 c 481 | Sbjct: 952 c 952 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,856 Number of Sequences: 18737 Number of extensions: 11856 Number of successful extensions: 317 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 315 Number of HSP's gapped (non-prelim): 2 length of query: 481 length of database: 41,270,998 effective HSP length: 17 effective length of query: 464 effective length of database: 40,952,469 effective search space: 19001945616 effective search space used: 19001945616 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG632994|BG632994 GH18008.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH18008 3 similar to CG4716: FBan0004716 located on: 2R 50A1-50A1;: 04/10/2001, mRNA sequence. (364 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9009 Number of Sequences: 18737 Number of extensions: 9009 Number of successful extensions: 842 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 842 Number of HSP's gapped (non-prelim): 0 length of query: 364 length of database: 41,270,998 effective HSP length: 17 effective length of query: 347 effective length of database: 40,952,469 effective search space: 14210506743 effective search space used: 14210506743 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG632998|BG632998 GH18038.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH18038 3 similar to Tequila: FBan0004821 'endopeptidase' located on: 3L 66F4-66F4;: 04/10/2001, mRNA sequence. (321 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Tequila-RD feature: mRNA loc=3L:join(9033368..9033539,9033774..9... 630 e-180 Tequila-RA feature: mRNA loc=3L:join(9033392..9033539,9033774..9... 630 e-180 Tequila-RB feature: mRNA loc=3L:join(9045910..9045977,9046034..9... 624 e-179 >Tequila-RD feature: mRNA loc=3L:join(9033368..9033539,9033774..9034332, 9046559..9048658,9048729..9049120,9049178..9049333, 9049395..9050175,9050243..9050335,9050447..9050530, 9050592..9050835);ID=FBan0004821;gene_id=FBgn0023479;gene _sym=Tequila;sym=CG4821;scaffold=AE003553;len=4581 Length = 4581 Score = 630 bits (318), Expect = e-180 Identities = 318/318 (100%) Strand = Plus / Minus Query: 4 cgttctaaaaaagtctgctttattagcaagttcactacaaaattcttataaattagtagt 63 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4580 cgttctaaaaaagtctgctttattagcaagttcactacaaaattcttataaattagtagt 4521 Query: 64 catgtaagaaggtggatattaaagtgtaaagtgagtatatgctcccttaaaagcgtagca 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4520 catgtaagaaggtggatattaaagtgtaaagtgagtatatgctcccttaaaagcgtagca 4461 Query: 124 agctctcattgattttctcgtagatccaatcgatatagtgattcacacggacgtagacac 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4460 agctctcattgattttctcgtagatccaatcgatatagtgattcacacggacgtagacac 4401 Query: 184 ccggtctgttcttgaagccgcagtgctgaccccacgaaataagcccgtacagagtctcgc 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4400 ccggtctgttcttgaagccgcagtgctgaccccacgaaataagcccgtacagagtctcgc 4341 Query: 244 catcgtcatcggagcagacaagtggaccgcctgagtcaccttcacaggcatccacactct 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4340 catcgtcatcggagcagacaagtggaccgcctgagtcaccttcacaggcatccacactct 4281 Query: 304 cgtccatggagccggcgc 321 |||||||||||||||||| Sbjct: 4280 cgtccatggagccggcgc 4263 >Tequila-RA feature: mRNA loc=3L:join(9033392..9033539,9033774..9034332, 9034382..9034576,9034730..9034975,9035029..9035505, 9035568..9035670,9043196..9043629,9043768..9044010, 9044075..9044539,9044598..9045977,9046034..9046498, 9046559..9048658,9048729..9049120,9049178..9049333, 9049395..9050175,9050243..9050335,9050447..9050530, 9050592..9050835);ID=FBan0004821;gene_id=FBgn0023479;gene _sym=Tequila;sym=CG4821;scaffold=AE003553;len=8565 Length = 8565 Score = 630 bits (318), Expect = e-180 Identities = 318/318 (100%) Strand = Plus / Minus Query: 4 cgttctaaaaaagtctgctttattagcaagttcactacaaaattcttataaattagtagt 63 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8564 cgttctaaaaaagtctgctttattagcaagttcactacaaaattcttataaattagtagt 8505 Query: 64 catgtaagaaggtggatattaaagtgtaaagtgagtatatgctcccttaaaagcgtagca 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8504 catgtaagaaggtggatattaaagtgtaaagtgagtatatgctcccttaaaagcgtagca 8445 Query: 124 agctctcattgattttctcgtagatccaatcgatatagtgattcacacggacgtagacac 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8444 agctctcattgattttctcgtagatccaatcgatatagtgattcacacggacgtagacac 8385 Query: 184 ccggtctgttcttgaagccgcagtgctgaccccacgaaataagcccgtacagagtctcgc 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8384 ccggtctgttcttgaagccgcagtgctgaccccacgaaataagcccgtacagagtctcgc 8325 Query: 244 catcgtcatcggagcagacaagtggaccgcctgagtcaccttcacaggcatccacactct 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8324 catcgtcatcggagcagacaagtggaccgcctgagtcaccttcacaggcatccacactct 8265 Query: 304 cgtccatggagccggcgc 321 |||||||||||||||||| Sbjct: 8264 cgtccatggagccggcgc 8247 >Tequila-RB feature: mRNA loc=3L:join(9045910..9045977,9046034..9046498, 9046559..9048658,9048729..9049120,9049178..9049333, 9049395..9050175,9050243..9050335,9050447..9050530, 9050592..9050831);ID=FBan0004821;gene_id=FBgn0023479;gene _sym=Tequila;sym=CG4821;scaffold=AE003553;len=4379 Length = 4379 Score = 624 bits (315), Expect = e-179 Identities = 315/315 (100%) Strand = Plus / Minus Query: 7 tctaaaaaagtctgctttattagcaagttcactacaaaattcttataaattagtagtcat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4379 tctaaaaaagtctgctttattagcaagttcactacaaaattcttataaattagtagtcat 4320 Query: 67 gtaagaaggtggatattaaagtgtaaagtgagtatatgctcccttaaaagcgtagcaagc 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4319 gtaagaaggtggatattaaagtgtaaagtgagtatatgctcccttaaaagcgtagcaagc 4260 Query: 127 tctcattgattttctcgtagatccaatcgatatagtgattcacacggacgtagacacccg 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4259 tctcattgattttctcgtagatccaatcgatatagtgattcacacggacgtagacacccg 4200 Query: 187 gtctgttcttgaagccgcagtgctgaccccacgaaataagcccgtacagagtctcgccat 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4199 gtctgttcttgaagccgcagtgctgaccccacgaaataagcccgtacagagtctcgccat 4140 Query: 247 cgtcatcggagcagacaagtggaccgcctgagtcaccttcacaggcatccacactctcgt 306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4139 cgtcatcggagcagacaagtggaccgcctgagtcaccttcacaggcatccacactctcgt 4080 Query: 307 ccatggagccggcgc 321 ||||||||||||||| Sbjct: 4079 ccatggagccggcgc 4065 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5496 Number of Sequences: 18737 Number of extensions: 5496 Number of successful extensions: 420 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 417 Number of HSP's gapped (non-prelim): 3 length of query: 321 length of database: 41,270,998 effective HSP length: 16 effective length of query: 305 effective length of database: 40,971,206 effective search space: 12496217830 effective search space used: 12496217830 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AQ025445|AQ025445 EP(X)1408 Drosophila melanogaster EP line Drosophila melanogaster genomic Sequence recovered from 5' end of P element, DNA sequence. (144 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 360 Number of Sequences: 18737 Number of extensions: 360 Number of successful extensions: 37 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 0 length of query: 144 length of database: 41,270,998 effective HSP length: 16 effective length of query: 128 effective length of database: 40,971,206 effective search space: 5244314368 effective search space used: 5244314368 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA201639|DMAA1639 LD04705.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD04705 5 similar to CG4049: FBan0004049 'enzyme' located on: 2R 60B5-60B6;: 04/10/2001, mRNA sequence. (511 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG4049-RB feature: mRNA loc=2R:complement(19151474..19152219,191... 825 0.0 CG4049-RA feature: mRNA loc=2R:complement(19151474..19152219,191... 825 0.0 >CG4049-RB feature: mRNA loc=2R:complement(19151474..19152219,19152269..19152502, 19152560..19152671,19152737..19153406, 19153470..19153637,19154479..19156839, 19157573..19157838);ID=FBan0004049;gene_id=FBgn0034976;g ene_sym=CG4049;sym=CG4049;scaffold=AE003463;len=4557 Length = 4557 Score = 825 bits (416), Expect = 0.0 Identities = 416/416 (100%) Strand = Plus / Plus Query: 1 tatatacaaacgtacatgttgaaaacagcgagaaaataaatcgagaataacattttaaat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tatatacaaacgtacatgttgaaaacagcgagaaaataaatcgagaataacattttaaat 60 Query: 61 taatataataacaatcggaaggacttggtcctcgcaatcacagtggcgcacgcgataagc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 taatataataacaatcggaaggacttggtcctcgcaatcacagtggcgcacgcgataagc 120 Query: 121 caagtatctcaagaacgttcaccaattaagagaacctcccaatcgtgcacatagaaaaat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 caagtatctcaagaacgttcaccaattaagagaacctcccaatcgtgcacatagaaaaat 180 Query: 181 atccatatgtataaaataacaataattaagaacctgcgttgttaattcttttatctgaaa 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 atccatatgtataaaataacaataattaagaacctgcgttgttaattcttttatctgaaa 240 Query: 241 accccgttcgccggctgcatgtaaatggataatccagaagccaacatggaagagtcaaac 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 accccgttcgccggctgcatgtaaatggataatccagaagccaacatggaagagtcaaac 300 Query: 301 ccaaattacgatgttaaccaaagactacaaaagccggagggttggccgcacgtcaatgag 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 ccaaattacgatgttaaccaaagactacaaaagccggagggttggccgcacgtcaatgag 360 Query: 361 ttccatccctccatgatgtatccggatgatcccaggcggtacttccacaatgcctc 416 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 ttccatccctccatgatgtatccggatgatcccaggcggtacttccacaatgcctc 416 >CG4049-RA feature: mRNA loc=2R:complement(19151474..19152219,19152269..19152502, 19152560..19152671,19152737..19153406, 19153834..19154334,19154479..19156839, 19157573..19157838);ID=FBan0004049;gene_id=FBgn0034976;g ene_sym=CG4049;sym=CG4049;scaffold=AE003463;len=4890 Length = 4890 Score = 825 bits (416), Expect = 0.0 Identities = 416/416 (100%) Strand = Plus / Plus Query: 1 tatatacaaacgtacatgttgaaaacagcgagaaaataaatcgagaataacattttaaat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tatatacaaacgtacatgttgaaaacagcgagaaaataaatcgagaataacattttaaat 60 Query: 61 taatataataacaatcggaaggacttggtcctcgcaatcacagtggcgcacgcgataagc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 taatataataacaatcggaaggacttggtcctcgcaatcacagtggcgcacgcgataagc 120 Query: 121 caagtatctcaagaacgttcaccaattaagagaacctcccaatcgtgcacatagaaaaat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 caagtatctcaagaacgttcaccaattaagagaacctcccaatcgtgcacatagaaaaat 180 Query: 181 atccatatgtataaaataacaataattaagaacctgcgttgttaattcttttatctgaaa 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 atccatatgtataaaataacaataattaagaacctgcgttgttaattcttttatctgaaa 240 Query: 241 accccgttcgccggctgcatgtaaatggataatccagaagccaacatggaagagtcaaac 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 accccgttcgccggctgcatgtaaatggataatccagaagccaacatggaagagtcaaac 300 Query: 301 ccaaattacgatgttaaccaaagactacaaaagccggagggttggccgcacgtcaatgag 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 ccaaattacgatgttaaccaaagactacaaaagccggagggttggccgcacgtcaatgag 360 Query: 361 ttccatccctccatgatgtatccggatgatcccaggcggtacttccacaatgcctc 416 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 ttccatccctccatgatgtatccggatgatcccaggcggtacttccacaatgcctc 416 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9507 Number of Sequences: 18737 Number of extensions: 9507 Number of successful extensions: 208 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 204 Number of HSP's gapped (non-prelim): 4 length of query: 511 length of database: 41,270,998 effective HSP length: 17 effective length of query: 494 effective length of database: 40,952,469 effective search space: 20230519686 effective search space used: 20230519686 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA202251|DMAA2251 LD02396.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD02396 5, mRNA sequence. (575 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value AlkB-RA feature: mRNA loc=X:complement(15589148..15589551,155896... 1140 0.0 >AlkB-RA feature: mRNA loc=X:complement(15589148..15589551,15589614..15590155, 15590207..15590501);ID=FBan0033250;gene_id=FBgn0053250;g ene_sym=AlkB;sym=CG33250;scaffold=AE003500;len=1241 Length = 1241 Score = 1140 bits (575), Expect = 0.0 Identities = 575/575 (100%) Strand = Plus / Plus Query: 1 caatgtctcttatgaattgcattcatttttaatttttatatctatcccatagtatttcca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 caatgtctcttatgaattgcattcatttttaatttttatatctatcccatagtatttcca 60 Query: 61 ccacatgtctgatttctaaacgtgctcaaaagcatttaagatttctccaaacgcagtcac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ccacatgtctgatttctaaacgtgctcaaaagcatttaagatttctccaaacgcagtcac 120 Query: 121 actattgctatcgtttatattaacttattgtttatattgtacttattgtttatgaagcat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 actattgctatcgtttatattaacttattgtttatattgtacttattgtttatgaagcat 180 Query: 181 gttcaagctagtttttaagcagtacaagtgcaaaagtaccagtcctgatttaacggaagt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 gttcaagctagtttttaagcagtacaagtgcaaaagtaccagtcctgatttaacggaagt 240 Query: 241 tgttaagatcgatgattgtgtagtcaaggggaatgatcaagaaaagagtgataataatat 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 tgttaagatcgatgattgtgtagtcaaggggaatgatcaagaaaagagtgataataatat 300 Query: 301 tgttcaacgattaagtatcagcaatgtagaaagcctacagacaatgccaggcgttaaatc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 tgttcaacgattaagtatcagcaatgtagaaagcctacagacaatgccaggcgttaaatc 360 Query: 361 gccaaaagattggcgaacctatacattaactaaccatcccggcattattgtgattcggaa 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 gccaaaagattggcgaacctatacattaactaaccatcccggcattattgtgattcggaa 420 Query: 421 tccattctcggaacgaggccggcgttattggagcgcccgatgtctgcgggattttccgcg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 tccattctcggaacgaggccggcgttattggagcgcccgatgtctgcgggattttccgcg 480 Query: 481 aacgccaaatatagtcaatttaaatgaaaggctcttcgatgaatccgtcaggtcggactg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 aacgccaaatatagtcaatttaaatgaaaggctcttcgatgaatccgtcaggtcggactg 540 Query: 541 gtggaaacagcttaatctgtgcagcgatggcgttg 575 ||||||||||||||||||||||||||||||||||| Sbjct: 541 gtggaaacagcttaatctgtgcagcgatggcgttg 575 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,469 Number of Sequences: 18737 Number of extensions: 11469 Number of successful extensions: 227 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 226 Number of HSP's gapped (non-prelim): 1 length of query: 575 length of database: 41,270,998 effective HSP length: 17 effective length of query: 558 effective length of database: 40,952,469 effective search space: 22851477702 effective search space used: 22851477702 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA202301|DMAA2301 LD02456.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD02456 5prime, mRNA sequence. (533 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value wdb-RA feature: mRNA loc=3R:complement(23380125..23380941,233810... 545 e-154 >wdb-RA feature: mRNA loc=3R:complement(23380125..23380941,23381005..23381234, 23381294..23381627,23381692..23381882, 23381948..23382142,23382239..23382438, 23382503..23383292,23383366..23383678, 23396768..23397294);ID=FBan0005643;gene_id=FBgn0027492;g ene_sym=wdb;sym=CG5643;scaffold=AE003761;len=3597 Length = 3597 Score = 545 bits (275), Expect = e-154 Identities = 289/296 (97%) Strand = Plus / Plus Query: 1 attctagttgccgctggagaaaattcgtaattctcgcataaagcgcacctgccggttacc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27 attctagttgccgctggagaaaattcgtaattctcgcataaagcgcacctgccggttacc 86 Query: 61 aaaatcgattgaaaagcgaacgtcccatattgcggcgcgataagcgggtgaaattgtggc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 87 aaaatcgattgaaaagcgaacgtcccatattgcggcgcgataagcgggtgaaattgtggc 146 Query: 121 agtgcgtgcgcgatagactgttagaaaagcagtgcaaattggaagtccggatgctcgaag 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 147 agtgcgtgcgcgatagactgttagaaaagcagtgcaaattggaagtccggatgctcgaag 206 Query: 181 gtgtgtgtgtgcgtcgcnnnnnnngtgcggttttcagctgcagtcggccaacagtgcaac 240 ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 207 gtgtgtgtgtgcgtcgctttttttgtgcggttttcagctgcagtcggccaacagtgcaac 266 Query: 241 gcaaacattgtgttctaaattacataaagcagggaatttctgcacgaaggcaaccg 296 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 267 gcaaacattgtgttctaaattacataaagcagggaatttctgcacgaaggcaaccg 322 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,676 Number of Sequences: 18737 Number of extensions: 13676 Number of successful extensions: 341 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 338 Number of HSP's gapped (non-prelim): 2 length of query: 533 length of database: 41,270,998 effective HSP length: 17 effective length of query: 516 effective length of database: 40,952,469 effective search space: 21131474004 effective search space used: 21131474004 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA202560|DMAA2560 LD02743.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD02743 5 similar to CG2093: FBan0002093 GO:[] located on: 2R 43D7-43E1;: 08/13/2002, mRNA sequence. (568 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG2093-RA feature: mRNA loc=2R:join(2628166..2628265,2629780..26... 1074 0.0 >CG2093-RA feature: mRNA loc=2R:join(2628166..2628265,2629780..2629866, 2629933..2630130,2630201..2630554,2630611..2630832, 2631168..2631332,2631385..2632900,2632962..2633592, 2633648..2633803,2633865..2634207,2634274..2634419, 2634483..2634729,2634787..2635059,2635128..2635340, 2635400..2635509,2635576..2636175,2636299..2636826, 2636888..2637046,2637108..2637716,2637778..2637905, 2637963..2638805,2638879..2639251,2639327..2640148, 2640211..2640311,2640377..2640515,2640577..2640860, 2640932..2641070, 2641130..2641576);ID=FBan0002093;gene_id=FBgn0033194;gene _sym=CG2093;sym=CG2093;scaffold=AE003840;len=9933 Length = 9933 Score = 1074 bits (542), Expect = 0.0 Identities = 552/556 (99%) Strand = Plus / Plus Query: 13 gcagcatggtgcagcgcatcatgccgaactcaactgtgcgtcagttcaagtacgccagga 72 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8240 gcagcatggtgcagcgcatcatgccgaactcaactgtgcgtcagttcaagtacgccagga 8299 Query: 73 tactgatccaagagttcctcttcaaagtcgatttgaacttccttactgccatcgccgaaa 132 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8300 tactgatccaagagttcctcttcaaagtcgatttgaacttccttactgccatcgccgaaa 8359 Query: 133 tgtttgccaaggaggtctcggacgaggcagcagctaagcagttccgtcagantgttgaat 192 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 8360 tgtttgccaaggaggtctcggacgaggcagcagctaagcagttccgtcaggatgttgaat 8419 Query: 193 caattgagctcccgctttcagcgttctttgaagagcactcgttggaggagcagaagagct 252 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8420 caattgagctcccgctttcagcgttctttgaagagcactcgttggaggagcagaagagct 8479 Query: 253 tttacgataacctgcatttgggtccgctcaagatccatgtcagcttctcgatggccgggt 312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8480 tttacgataacctgcatttgggtccgctcaagatccatgtcagcttctcgatggccgggt 8539 Query: 313 cggacacaaaggcgttgcccggtttcttgggctcattggtccagggcgtgggtgtgactc 372 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8540 cggacacaaaggcgttgcccggtttcttgggctcattggtccagggcgtgggtgtgactc 8599 Query: 373 taacggacgtaaacgatgttgttttccgtctggccttcttcgagcgcgagtatcaattct 432 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8600 taacggacgtaaacgatgttgttttccgtctggccttcttcgagcgcgagtatcaattct 8659 Query: 433 tctcccaaaagcagctaatcaacgagatcacctcacactacactggccaagcgttaaagc 492 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8660 tctcccaaaagcagctaatcaacgagatcacctcacactacactggccaagcgttaaagc 8719 Query: 493 agctgtatgtgctcgtcctcggacttgatgntctgggcaatccctatggcctagtggttg 552 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 8720 agctgtatgtgctcgtcctcggacttgatgtcctgggcaatccctatggcctagtggttg 8779 Query: 553 gtcttaagaagggcgt 568 |||||||||||||||| Sbjct: 8780 gtcttaagaagggcgt 8795 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,121 Number of Sequences: 18737 Number of extensions: 13121 Number of successful extensions: 322 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 321 Number of HSP's gapped (non-prelim): 1 length of query: 568 length of database: 41,270,998 effective HSP length: 17 effective length of query: 551 effective length of database: 40,952,469 effective search space: 22564810419 effective search space used: 22564810419 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA246707|DMAA46707 LD05774.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD05774 5prime, mRNA sequence. (586 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG15893-RA feature: mRNA loc=X:6071215..6073143;ID=FBan0015893;g... 924 0.0 >CG15893-RA feature: mRNA loc=X:6071215..6073143;ID=FBan0015893;gene_id=FBgn002986 5;gene_sym=CG15893;sym=CG15893;scaffold=AE003437;len=192 9 Length = 1929 Score = 924 bits (466), Expect = 0.0 Identities = 482/485 (99%), Gaps = 2/485 (0%) Strand = Plus / Plus Query: 93 tccaagcaaaacgagccgaaagaccgttttatttctttttgttttgtgttctgaaagaga 152 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 125 tccaagcaaaacgagccgaaagaccgttttatttctttttgttttgtgttctgaaagaga 184 Query: 153 gagggaaaaaggcaagcagcagaaagtgatcgagatggcgttcatgatgcccgtgatgaa 212 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 185 gagggaaaaaggcaagcagcagaaagtgatcgagatggcgttcatgatgcccgtgatgaa 244 Query: 213 gaacaattacgatatttacaaggacacgcgttcccgcaaaacgtcagaatgttcgaatgc 272 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 245 gaacaattacgatatttacaaggacacgcgttcccgcaaaacgtcagaatgttcgaatgc 304 Query: 273 gagtagtaacggtacaacggctttggccaccgctcttggaacgcccgcccagggacaaca 332 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 305 gagtagtaacggtacaacggctttggccaccgctcttggaacgcccgcccagggacaaca 364 Query: 333 acaacagcgacgccgcaaggtgtccgaatgcaagtcggagagcttcgccacctcaccatc 392 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 365 acaacagcgacgccgcaaggtgtccgaatgcaagtcggagagcttcgccacctcaccatc 424 Query: 393 gcacggtcaactgggcgtgtcctccccccaccaaaggatgcaaatgcagcgctgccacag 452 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 425 gcacggtcaactgggcgtgtcctccccccaccaaaggatgcaaatgcagcgctgccacag 484 Query: 453 ttcgcgcgcttttccacgcaacgcatcgcgcagttcgcacggttcgctgcagcaaatggt 512 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 485 ttcgcgcgcttttccacgcaacgcatcgcgcagttcgcacggttcgctgcagcaaatggt 544 Query: 513 ngtcg-ccacgcgcagtagtccgcncagccgctcgcacaccgcatccgcactggaaaggc 571 |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 545 -gtcgcccacgcgcagtagtccgcccagccgctcgcacaccgcatccgcactggaaaggc 603 Query: 572 aggcg 576 ||||| Sbjct: 604 aggcg 608 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 18,158 Number of Sequences: 18737 Number of extensions: 18158 Number of successful extensions: 800 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 797 Number of HSP's gapped (non-prelim): 2 length of query: 586 length of database: 41,270,998 effective HSP length: 17 effective length of query: 569 effective length of database: 40,952,469 effective search space: 23301954861 effective search space used: 23301954861 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA246803|DMAA46803 LD05795.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD05795 5prime, mRNA sequence. (596 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG2183-RA feature: mRNA loc=2R:join(3228694..3228873,3228937..32... 1074 0.0 >CG2183-RA feature: mRNA loc=2R:join(3228694..3228873,3228937..3229820, 3229876..3229938,3229992..3230187, 3230251..3230838);ID=FBan0002183;gene_id=FBgn0033273;gen e_sym=CG2183;sym=CG2183;scaffold=AE003838;len=1911 Length = 1911 Score = 1074 bits (542), Expect = 0.0 Identities = 563/570 (98%) Strand = Plus / Plus Query: 27 tacgagggtttcaacttctcggataaggtgaaaccctcgaaaccagctccttacgtggat 86 ||||| || ||| ||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 154 tacgatggattctacttctcggataaggtgaaacgctcgaaaccagctccttacgtggat 213 Query: 87 cccgagcaaaagctctacgatgcagtcgtcgctggggatctcaagacgatgcaggaggag 146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 214 cccgagcaaaagctctacgatgcagtcgtcgctggggatctcaagacgatgcaggaggag 273 Query: 147 atgcgcaaactcgtcctccaagtggatcagccagtaaaaggtggtcttaacttactgatg 206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 274 atgcgcaaactcgtcctccaagtggatcagccagtaaaaggtggtcttaacttactgatg 333 Query: 207 ctcgcctgtcgcgagggccactacaaaatagttgaatggctgctggaaagggcaggggcc 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 334 ctcgcctgtcgcgagggccactacaaaatagttgaatggctgctggaaagggcaggggcc 393 Query: 267 aacgtgaatcggcagctggattccttgatgccgctgatgatggcctgcaataccacccac 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 394 aacgtgaatcggcagctggattccttgatgccgctgatgatggcctgcaataccacccac 453 Query: 327 aaggatccgtgcctggcggagagaattgtgggcctgctcttgcggcacggagccgtgatc 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 454 aaggatccgtgcctggcggagagaattgtgggcctgctcttgcggcacggagccgtgatc 513 Query: 387 aatgtttcggaaaaatatggaatgacaccctttatgttcgcctgccaaaatggctttgcg 446 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 514 aatgtttcggaaaaatatggaatgacaccctttatgttcgcctgccaaaatggctttgcc 573 Query: 447 gccgttgtgcgtctgcttattaaggatgctagtttcgatgctgtggataatcagggctgc 506 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 574 ggcgttgtgcgtctgcttattaaggatgctagtttcgatgctgtggataatcagggctgc 633 Query: 507 actgccatctttcatgccatcgagaacaatcacgtggaagtggtcaagctgttggtggag 566 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 634 actgccatctttcatgccatcgagaaaaatcacgtggaagtggtcaagctgttggtggag 693 Query: 567 gcgggcgcgaatgccacgatagccaacaac 596 |||||||||||||||||||||||||||||| Sbjct: 694 gcgggcgcgaatgccacgatagccaacaac 723 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,484 Number of Sequences: 18737 Number of extensions: 14484 Number of successful extensions: 329 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 328 Number of HSP's gapped (non-prelim): 1 length of query: 596 length of database: 41,270,998 effective HSP length: 17 effective length of query: 579 effective length of database: 40,952,469 effective search space: 23711479551 effective search space used: 23711479551 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA263425|DMAA63425 LD07241.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD07241 5prime, mRNA sequence. (471 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,166 Number of Sequences: 18737 Number of extensions: 10166 Number of successful extensions: 244 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 244 Number of HSP's gapped (non-prelim): 0 length of query: 471 length of database: 41,270,998 effective HSP length: 17 effective length of query: 454 effective length of database: 40,952,469 effective search space: 18592420926 effective search space used: 18592420926 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA263927|DMAA63927 LD07107.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD07107 5prime, mRNA sequence. (572 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG6169-RA feature: mRNA loc=3L:complement(15769866..15770890,157... 513 e-145 >CG6169-RA feature: mRNA loc=3L:complement(15769866..15770890,15770950..15771687, 15771838..15772060,15772126..15772868, 15774350..15775298);ID=FBan0006169;gene_id=FBgn0036534;g ene_sym=CG6169;sym=CG6169;scaffold=AE003529;len=3678 Length = 3678 Score = 513 bits (259), Expect = e-145 Identities = 259/259 (100%) Strand = Plus / Plus Query: 1 aaggcgagttttgagcagttgaaaagcccgttaaatagtgcaaaatagtagctaatttta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 30 aaggcgagttttgagcagttgaaaagcccgttaaatagtgcaaaatagtagctaatttta 89 Query: 61 agtgcaacgtgtaaataaaggcaatttagatcgcgaaaaagttcggtgagcaaataataa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 90 agtgcaacgtgtaaataaaggcaatttagatcgcgaaaaagttcggtgagcaaataataa 149 Query: 121 tttgagattggaaagtggaaagtacgtgaactgggcgagaaaagaaaacggaaaaacgtg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 150 tttgagattggaaagtggaaagtacgtgaactgggcgagaaaagaaaacggaaaaacgtg 209 Query: 181 agactgtgtgcgtgcgaagaattttccgtctccctcgcaccaaagtggagcgcactcaat 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 210 agactgtgtgcgtgcgaagaattttccgtctccctcgcaccaaagtggagcgcactcaat 269 Query: 241 tattttgtggatggagtgg 259 ||||||||||||||||||| Sbjct: 270 tattttgtggatggagtgg 288 Score = 476 bits (240), Expect = e-133 Identities = 249/252 (98%) Strand = Plus / Plus Query: 321 aaacagcaatagcaacaacagaattaaatgcaaatgcaaaacatgttgagggaaagagag 380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 350 aaacagcaatagcaacaacagaattaaatgcaaatgcaaaacatgttgagggaaagagag 409 Query: 381 cgaaaatcgagagaacaatagcaaaaggatgtaatgcaaccgatggaataactagagtac 440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 410 cgaaaatcgagagaacaatagcaaaaggatgtaatgcaaccgatggaataactagagtac 469 Query: 441 aagtacaaaaattgcattggaaatttaaattcgtgcgacagaagcggacgattgcagaaa 500 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 470 aagtacaaaaattgcattggaaatttaaattcgtgcgacaaaagcggacgattgcagaaa 529 Query: 501 ttttcgaaacttggcagccctatttactaccaaagcaacgccgttgtaaaaatacgtgac 560 ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| Sbjct: 530 ttttcgaaacttggcagccatatttactacaaaagcaacgccgttgtaaaaatacgtgac 589 Query: 561 aaaacgcttaca 572 |||||||||||| Sbjct: 590 aaaacgcttaca 601 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,254 Number of Sequences: 18737 Number of extensions: 13254 Number of successful extensions: 491 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 489 Number of HSP's gapped (non-prelim): 2 length of query: 572 length of database: 41,270,998 effective HSP length: 17 effective length of query: 555 effective length of database: 40,952,469 effective search space: 22728620295 effective search space used: 22728620295 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA264033|DMAA64033 LD07441.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD07441 5, mRNA sequence. (597 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Lap1-RA feature: mRNA loc=2R:join(9999402..9999744,9999818..1000... 1183 0.0 >Lap1-RA feature: mRNA loc=2R:join(9999402..9999744,9999818..10000024, 10000081..10000216,10000273..10000562,10000776..10002569, 10002631..10004028);ID=FBan0010255;gene_id=FBgn0033984;ge ne_sym=Lap1;sym=CG10255;scaffold=AE003812;len=4168 Length = 4168 Score = 1183 bits (597), Expect = 0.0 Identities = 597/597 (100%) Strand = Plus / Minus Query: 1 ccaaacatattattgcttccttaagtgcataacttaactatttacataagatatcgatta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3443 ccaaacatattattgcttccttaagtgcataacttaactatttacataagatatcgatta 3384 Query: 61 gatactgattaaataaatccaacttataagtggctcaattcgaattataaacagctttaa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3383 gatactgattaaataaatccaacttataagtggctcaattcgaattataaacagctttaa 3324 Query: 121 agtcaaatcataaattcaattcatcttcattcaacttaaattttgagaatacttgttgtg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3323 agtcaaatcataaattcaattcatcttcattcaacttaaattttgagaatacttgttgtg 3264 Query: 181 ggctataactactaaatttggccgtcttctggtaatattcttctatcgagtatggaggtg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3263 ggctataactactaaatttggccgtcttctggtaatattcttctatcgagtatggaggtg 3204 Query: 241 caaagaaaatggcagtttggattcgtctatctaatatacaaaaagcatgggatcctctag 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3203 caaagaaaatggcagtttggattcgtctatctaatatacaaaaagcatgggatcctctag 3144 Query: 301 ctggcgattgtgctctatgactgatggtttgaccgccagtacggaagggtattatgaact 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3143 ctggcgattgtgctctatgactgatggtttgaccgccagtacggaagggtattatgaact 3084 Query: 361 aacactatgatcggtccaagtaatttgttatccgatttcggcgatgctgcttattggaaa 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3083 aacactatgatcggtccaagtaatttgttatccgatttcggcgatgctgcttattggaaa 3024 Query: 421 aatgcgttagaaaaatgcacaaaaagtcttcggtctcgggatgggaatcggcttaggtcg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3023 aatgcgttagaaaaatgcacaaaaagtcttcggtctcgggatgggaatcggcttaggtcg 2964 Query: 481 gtaaatagatggtccatcattttctcgacaacattatgttcatgaccgtgccgcagttta 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2963 gtaaatagatggtccatcattttctcgacaacattatgttcatgaccgtgccgcagttta 2904 Query: 541 gcagcactcgtttggcatcgctcaggttggcattggtcaggtcgtagccgtcgattt 597 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2903 gcagcactcgtttggcatcgctcaggttggcattggtcaggtcgtagccgtcgattt 2847 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,471 Number of Sequences: 18737 Number of extensions: 11471 Number of successful extensions: 202 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 201 Number of HSP's gapped (non-prelim): 1 length of query: 597 length of database: 41,270,998 effective HSP length: 17 effective length of query: 580 effective length of database: 40,952,469 effective search space: 23752432020 effective search space used: 23752432020 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA264761|DMAA64761 LD08455.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD08455 5 similar to CG17450: FBan0017450 GO:[] located on: U;: 08/13/2002, mRNA sequence. (620 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32820-RA feature: mRNA loc=X:complement(21284100..21284637,212... 1229 0.0 CG32819-RA feature: mRNA loc=X:complement(21290192..21290729,212... 1229 0.0 CG17450-RB feature: mRNA loc=X:complement(21278018..21278555,212... 1098 0.0 CG17450-RA feature: mRNA loc=X:complement(21278018..21278555,212... 458 e-128 CG32820-RB feature: mRNA loc=X:complement(21284100..21284637,212... 458 e-128 CG32819-RB feature: mRNA loc=X:complement(21290192..21290729,212... 458 e-128 >CG32820-RA feature: mRNA loc=X:complement(21284100..21284637,21284798..21285385, 21285509..21285861, 21286534..21286922);ID=FBan0032820;gene_id=FBgn0052820;g ene_sym=CG32820;sym=CG32820;scaffold=AE003122;len=1868 Length = 1868 Score = 1229 bits (620), Expect = 0.0 Identities = 620/620 (100%) Strand = Plus / Plus Query: 1 cagacccaaagtaaagggatctccgaggaagagaagtggtaatatatcgagtccgtcgac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 cagacccaaagtaaagggatctccgaggaagagaagtggtaatatatcgagtccgtcgac 60 Query: 61 aaatgctctgctgggccaacgaggatcactatctgagccaacgctacccgaatccgcagc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 aaatgctctgctgggccaacgaggatcactatctgagccaacgctacccgaatccgcagc 120 Query: 121 aaaaggcgccagaaacgcttaagaacctgctgttgcgatccagtgtaccgatagtgggtg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aaaaggcgccagaaacgcttaagaacctgctgttgcgatccagtgtaccgatagtgggtg 180 Query: 181 ctccgaatcccgagaaggactcgcatttcgccggcaccatggcaccgctcaagggtcagg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 ctccgaatcccgagaaggactcgcatttcgccggcaccatggcaccgctcaagggtcagg 240 Query: 241 aggtgcttaagttccacaagcactcctacctcgagaaccgcatcttcgatcaccgcctgg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 aggtgcttaagttccacaagcactcctacctcgagaaccgcatcttcgatcaccgcctgg 300 Query: 301 tcaaggacaacctgctggacaagtggcccaccgctgacatgaacgagtacaacgagcgca 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 tcaaggacaacctgctggacaagtggcccaccgctgacatgaacgagtacaacgagcgca 360 Query: 361 aggaccaccgcaacctcatggagtcctatccatggagccaggcgggcgctccgccctgca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 aggaccaccgcaacctcatggagtcctatccatggagccaggcgggcgctccgccctgca 420 Query: 421 tggagcccgtcatggggccttcgatcccgccgagagttggcgccgcctacgagacgccca 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 tggagcccgtcatggggccttcgatcccgccgagagttggcgccgcctacgagacgccca 480 Query: 481 cgaagcacccgtggcgccctgctatggcctatgagctaatccaggtgaagcatatgcccg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 cgaagcacccgtggcgccctgctatggcctatgagctaatccaggtgaagcatatgcccg 540 Query: 541 agcagccggtgaccaaccagctgaccaagcagtgcttcctgcccaagggcatgaagacgg 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 agcagccggtgaccaaccagctgaccaagcagtgcttcctgcccaagggcatgaagacgg 600 Query: 601 acggcatgatattccccaac 620 |||||||||||||||||||| Sbjct: 601 acggcatgatattccccaac 620 >CG32819-RA feature: mRNA loc=X:complement(21290192..21290729,21290890..21291477, 21291601..21291953, 21292626..21293014);ID=FBan0032819;gene_id=FBgn0052819;g ene_sym=CG32819;sym=CG32819;scaffold=AE003122;len=1868 Length = 1868 Score = 1229 bits (620), Expect = 0.0 Identities = 620/620 (100%) Strand = Plus / Plus Query: 1 cagacccaaagtaaagggatctccgaggaagagaagtggtaatatatcgagtccgtcgac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 cagacccaaagtaaagggatctccgaggaagagaagtggtaatatatcgagtccgtcgac 60 Query: 61 aaatgctctgctgggccaacgaggatcactatctgagccaacgctacccgaatccgcagc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 aaatgctctgctgggccaacgaggatcactatctgagccaacgctacccgaatccgcagc 120 Query: 121 aaaaggcgccagaaacgcttaagaacctgctgttgcgatccagtgtaccgatagtgggtg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aaaaggcgccagaaacgcttaagaacctgctgttgcgatccagtgtaccgatagtgggtg 180 Query: 181 ctccgaatcccgagaaggactcgcatttcgccggcaccatggcaccgctcaagggtcagg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 ctccgaatcccgagaaggactcgcatttcgccggcaccatggcaccgctcaagggtcagg 240 Query: 241 aggtgcttaagttccacaagcactcctacctcgagaaccgcatcttcgatcaccgcctgg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 aggtgcttaagttccacaagcactcctacctcgagaaccgcatcttcgatcaccgcctgg 300 Query: 301 tcaaggacaacctgctggacaagtggcccaccgctgacatgaacgagtacaacgagcgca 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 tcaaggacaacctgctggacaagtggcccaccgctgacatgaacgagtacaacgagcgca 360 Query: 361 aggaccaccgcaacctcatggagtcctatccatggagccaggcgggcgctccgccctgca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 aggaccaccgcaacctcatggagtcctatccatggagccaggcgggcgctccgccctgca 420 Query: 421 tggagcccgtcatggggccttcgatcccgccgagagttggcgccgcctacgagacgccca 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 tggagcccgtcatggggccttcgatcccgccgagagttggcgccgcctacgagacgccca 480 Query: 481 cgaagcacccgtggcgccctgctatggcctatgagctaatccaggtgaagcatatgcccg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 cgaagcacccgtggcgccctgctatggcctatgagctaatccaggtgaagcatatgcccg 540 Query: 541 agcagccggtgaccaaccagctgaccaagcagtgcttcctgcccaagggcatgaagacgg 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 agcagccggtgaccaaccagctgaccaagcagtgcttcctgcccaagggcatgaagacgg 600 Query: 601 acggcatgatattccccaac 620 |||||||||||||||||||| Sbjct: 601 acggcatgatattccccaac 620 >CG17450-RB feature: mRNA loc=X:complement(21278018..21278555,21278713..21279300, 21279424..21279776, 21280442..21280768);ID=FBan0017450;gene_id=FBgn0040028;g ene_sym=CG17450;sym=CG17450;scaffold=AE003122;len=1806 Length = 1806 Score = 1098 bits (554), Expect = 0.0 Identities = 557/558 (99%) Strand = Plus / Plus Query: 63 atgctctgctgggccaacgaggatcactatctgagccaacgctacccgaatccgcagcaa 122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atgctctgctgggccaacgaggatcactatctgagccaacgctacccgaatccgcagcaa 60 Query: 123 aaggcgccagaaacgcttaagaacctgctgttgcgatccagtgtaccgatagtgggtgct 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 61 aaggcgccagaaacgcttaagaacctgctgttgcgatccagtgtaccgatagtgagtgct 120 Query: 183 ccgaatcccgagaaggactcgcatttcgccggcaccatggcaccgctcaagggtcaggag 242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 ccgaatcccgagaaggactcgcatttcgccggcaccatggcaccgctcaagggtcaggag 180 Query: 243 gtgcttaagttccacaagcactcctacctcgagaaccgcatcttcgatcaccgcctggtc 302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 gtgcttaagttccacaagcactcctacctcgagaaccgcatcttcgatcaccgcctggtc 240 Query: 303 aaggacaacctgctggacaagtggcccaccgctgacatgaacgagtacaacgagcgcaag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 aaggacaacctgctggacaagtggcccaccgctgacatgaacgagtacaacgagcgcaag 300 Query: 363 gaccaccgcaacctcatggagtcctatccatggagccaggcgggcgctccgccctgcatg 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 gaccaccgcaacctcatggagtcctatccatggagccaggcgggcgctccgccctgcatg 360 Query: 423 gagcccgtcatggggccttcgatcccgccgagagttggcgccgcctacgagacgcccacg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 gagcccgtcatggggccttcgatcccgccgagagttggcgccgcctacgagacgcccacg 420 Query: 483 aagcacccgtggcgccctgctatggcctatgagctaatccaggtgaagcatatgcccgag 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 aagcacccgtggcgccctgctatggcctatgagctaatccaggtgaagcatatgcccgag 480 Query: 543 cagccggtgaccaaccagctgaccaagcagtgcttcctgcccaagggcatgaagacggac 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 cagccggtgaccaaccagctgaccaagcagtgcttcctgcccaagggcatgaagacggac 540 Query: 603 ggcatgatattccccaac 620 |||||||||||||||||| Sbjct: 541 ggcatgatattccccaac 558 >CG17450-RA feature: mRNA loc=X:complement(21278018..21278555,21278713..21279300, 21279424..21280004);ID=FBan0017450;gene_id=FBgn0040028;g ene_sym=CG17450;sym=CG17450;scaffold=AE003122;len=1707 Length = 1707 Score = 458 bits (231), Expect = e-128 Identities = 231/231 (100%) Strand = Plus / Plus Query: 390 ccatggagccaggcgggcgctccgccctgcatggagcccgtcatggggccttcgatcccg 449 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 229 ccatggagccaggcgggcgctccgccctgcatggagcccgtcatggggccttcgatcccg 288 Query: 450 ccgagagttggcgccgcctacgagacgcccacgaagcacccgtggcgccctgctatggcc 509 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 289 ccgagagttggcgccgcctacgagacgcccacgaagcacccgtggcgccctgctatggcc 348 Query: 510 tatgagctaatccaggtgaagcatatgcccgagcagccggtgaccaaccagctgaccaag 569 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 349 tatgagctaatccaggtgaagcatatgcccgagcagccggtgaccaaccagctgaccaag 408 Query: 570 cagtgcttcctgcccaagggcatgaagacggacggcatgatattccccaac 620 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 409 cagtgcttcctgcccaagggcatgaagacggacggcatgatattccccaac 459 >CG32820-RB feature: mRNA loc=X:complement(21284100..21284637,21284798..21285385, 21285509..21285945);ID=FBan0032820;gene_id=FBgn0052820;g ene_sym=CG32820;sym=CG32820;scaffold=AE003122;len=1563 Length = 1563 Score = 458 bits (231), Expect = e-128 Identities = 231/231 (100%) Strand = Plus / Plus Query: 390 ccatggagccaggcgggcgctccgccctgcatggagcccgtcatggggccttcgatcccg 449 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 85 ccatggagccaggcgggcgctccgccctgcatggagcccgtcatggggccttcgatcccg 144 Query: 450 ccgagagttggcgccgcctacgagacgcccacgaagcacccgtggcgccctgctatggcc 509 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 145 ccgagagttggcgccgcctacgagacgcccacgaagcacccgtggcgccctgctatggcc 204 Query: 510 tatgagctaatccaggtgaagcatatgcccgagcagccggtgaccaaccagctgaccaag 569 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 205 tatgagctaatccaggtgaagcatatgcccgagcagccggtgaccaaccagctgaccaag 264 Query: 570 cagtgcttcctgcccaagggcatgaagacggacggcatgatattccccaac 620 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 265 cagtgcttcctgcccaagggcatgaagacggacggcatgatattccccaac 315 >CG32819-RB feature: mRNA loc=X:complement(21290192..21290729,21290890..21291477, 21291601..21292181);ID=FBan0032819;gene_id=FBgn0052819;g ene_sym=CG32819;sym=CG32819;scaffold=AE003122;len=1707 Length = 1707 Score = 458 bits (231), Expect = e-128 Identities = 231/231 (100%) Strand = Plus / Plus Query: 390 ccatggagccaggcgggcgctccgccctgcatggagcccgtcatggggccttcgatcccg 449 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 229 ccatggagccaggcgggcgctccgccctgcatggagcccgtcatggggccttcgatcccg 288 Query: 450 ccgagagttggcgccgcctacgagacgcccacgaagcacccgtggcgccctgctatggcc 509 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 289 ccgagagttggcgccgcctacgagacgcccacgaagcacccgtggcgccctgctatggcc 348 Query: 510 tatgagctaatccaggtgaagcatatgcccgagcagccggtgaccaaccagctgaccaag 569 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 349 tatgagctaatccaggtgaagcatatgcccgagcagccggtgaccaaccagctgaccaag 408 Query: 570 cagtgcttcctgcccaagggcatgaagacggacggcatgatattccccaac 620 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 409 cagtgcttcctgcccaagggcatgaagacggacggcatgatattccccaac 459 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,256 Number of Sequences: 18737 Number of extensions: 15256 Number of successful extensions: 348 Number of sequences better than 1.0e-100: 6 Number of HSP's better than 0.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 342 Number of HSP's gapped (non-prelim): 6 length of query: 620 length of database: 41,270,998 effective HSP length: 17 effective length of query: 603 effective length of database: 40,952,469 effective search space: 24694338807 effective search space used: 24694338807 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA391545|DMAA91545 LD10566.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD10566 5prime, mRNA sequence. (489 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32594-RC feature: mRNA loc=X:join(14755448..14755968,14761600.... 850 0.0 CG32594-RB feature: mRNA loc=X:join(14755448..14755968,14761600.... 850 0.0 >CG32594-RC feature: mRNA loc=X:join(14755448..14755968,14761600..14761861, 14761925..14762082,14762192..14762481, 14762557..14763587,14764620..14765154, 14772630..14773074);ID=FBan0032594;gene_id=FBgn0052594;g ene_sym=CG32594;sym=CG32594;scaffold=AE003497;len=3242 Length = 3242 Score = 850 bits (429), Expect = 0.0 Identities = 470/489 (96%) Strand = Plus / Plus Query: 1 ccatccggtaaacacgtctcacaacgttatttgtgttgaatatatatatannnnnnngtt 60 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 21 ccatccggtaaacacgtctcacaacgttatttgtgttgaatatatatatatttttttgtt 80 Query: 61 gtggctcnnnnnnnnnaatttctgcggcccctaaagttcgacgatcgtgagaagggaaaa 120 ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 81 gtggctctttttttttaatttctgcggcccctaaagttcgacgatcgtgagaagggaaaa 140 Query: 121 agagtgtgaagtgacctaagcggttttgaaatatctatcttggcaaaacgagaacaaatt 180 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 141 agagtgtgaagtgacctaagcggttttgaaatatctatcttggcaaaacgaaaacaaatt 200 Query: 181 tgttaaagcacatataaacaaaaacaaaataacaacaataaaagtgaagcaaaggtgaag 240 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 201 tgttaaagcacatataaacaaaaacaaaataacaaaaataaaagtgaagcaaaggtgaag 260 Query: 241 aagaccagaatgaattcgcgacggattgctctggtcctcctaatcggcataatcgtttcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 261 aagaccagaatgaattcgcgacggattgctctggtcctcctaatcggcataatcgtttcg 320 Query: 301 ttttctggccatgatgcactaacctatccggagcgcttcgatcgcctgcccacttggggt 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 321 ttttctggccatgatgcactaacctatccggagcgcttcgatcgcctgcccacttggggt 380 Query: 361 ggtcattcccaaattggtgggccgctgctggataccgcccaccgggagaatcgtgagaaa 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 381 ggtcattcccaaattggtgggccgctgctggataccgcccaccgggagaatcgtgagaaa 440 Query: 421 agggagaatagggtggacctgtgccggcactgtttctgcattcatctccaggcaatctgt 480 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 441 agggagaatagggtggacctgtgccggcactgtttctgcattcatctcaaggcaatctgt 500 Query: 481 gattacaag 489 ||||||||| Sbjct: 501 gattacaag 509 >CG32594-RB feature: mRNA loc=X:join(14755448..14755968,14761600..14761861, 14761925..14762082,14762192..14762481, 14762557..14764361,14764620..14765154, 14772630..14773074);ID=FBan0032594;gene_id=FBgn0052594;g ene_sym=CG32594;sym=CG32594;scaffold=AE003497;len=4016 Length = 4016 Score = 850 bits (429), Expect = 0.0 Identities = 470/489 (96%) Strand = Plus / Plus Query: 1 ccatccggtaaacacgtctcacaacgttatttgtgttgaatatatatatannnnnnngtt 60 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 21 ccatccggtaaacacgtctcacaacgttatttgtgttgaatatatatatatttttttgtt 80 Query: 61 gtggctcnnnnnnnnnaatttctgcggcccctaaagttcgacgatcgtgagaagggaaaa 120 ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 81 gtggctctttttttttaatttctgcggcccctaaagttcgacgatcgtgagaagggaaaa 140 Query: 121 agagtgtgaagtgacctaagcggttttgaaatatctatcttggcaaaacgagaacaaatt 180 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 141 agagtgtgaagtgacctaagcggttttgaaatatctatcttggcaaaacgaaaacaaatt 200 Query: 181 tgttaaagcacatataaacaaaaacaaaataacaacaataaaagtgaagcaaaggtgaag 240 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 201 tgttaaagcacatataaacaaaaacaaaataacaaaaataaaagtgaagcaaaggtgaag 260 Query: 241 aagaccagaatgaattcgcgacggattgctctggtcctcctaatcggcataatcgtttcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 261 aagaccagaatgaattcgcgacggattgctctggtcctcctaatcggcataatcgtttcg 320 Query: 301 ttttctggccatgatgcactaacctatccggagcgcttcgatcgcctgcccacttggggt 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 321 ttttctggccatgatgcactaacctatccggagcgcttcgatcgcctgcccacttggggt 380 Query: 361 ggtcattcccaaattggtgggccgctgctggataccgcccaccgggagaatcgtgagaaa 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 381 ggtcattcccaaattggtgggccgctgctggataccgcccaccgggagaatcgtgagaaa 440 Query: 421 agggagaatagggtggacctgtgccggcactgtttctgcattcatctccaggcaatctgt 480 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 441 agggagaatagggtggacctgtgccggcactgtttctgcattcatctcaaggcaatctgt 500 Query: 481 gattacaag 489 ||||||||| Sbjct: 501 gattacaag 509 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 21,216 Number of Sequences: 18737 Number of extensions: 21216 Number of successful extensions: 482 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 478 Number of HSP's gapped (non-prelim): 4 length of query: 489 length of database: 41,270,998 effective HSP length: 17 effective length of query: 472 effective length of database: 40,952,469 effective search space: 19329565368 effective search space used: 19329565368 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA391571|DMAA91571 LD10585.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD10585 5prime, mRNA sequence. (596 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,740 Number of Sequences: 18737 Number of extensions: 13740 Number of successful extensions: 405 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 405 Number of HSP's gapped (non-prelim): 0 length of query: 596 length of database: 41,270,998 effective HSP length: 17 effective length of query: 579 effective length of database: 40,952,469 effective search space: 23711479551 effective search space used: 23711479551 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA392262|DMAA92262 LD11278.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD11278 5prime, mRNA sequence. (572 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,817 Number of Sequences: 18737 Number of extensions: 12817 Number of successful extensions: 359 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 359 Number of HSP's gapped (non-prelim): 0 length of query: 572 length of database: 41,270,998 effective HSP length: 17 effective length of query: 555 effective length of database: 40,952,469 effective search space: 22728620295 effective search space used: 22728620295 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA392735|DMAA92735 LD11861.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD11861 5, mRNA sequence. (634 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,795 Number of Sequences: 18737 Number of extensions: 11795 Number of successful extensions: 267 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 267 Number of HSP's gapped (non-prelim): 0 length of query: 634 length of database: 41,270,998 effective HSP length: 17 effective length of query: 617 effective length of database: 40,952,469 effective search space: 25267673373 effective search space used: 25267673373 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA438826|DMAA38826 LD13184.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD13184 5 similar to CG6661: FBan0006661 GO:[1-pyrroline-5-carboxylate dehydrogenase (GO:0003842)] located on: 3L 70C11-70C11;: 08/13/2002, mRNA sequence. (650 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG6661-RA feature: mRNA loc=3L:13983656..13985630;ID=FBan0006661... 1251 0.0 >CG6661-RA feature: mRNA loc=3L:13983656..13985630;ID=FBan0006661;gene_id=FBgn0036 403;gene_sym=CG6661;sym=CG6661;scaffold=AE003536;len=1975 Length = 1975 Score = 1251 bits (631), Expect = 0.0 Identities = 647/650 (99%), Gaps = 2/650 (0%) Strand = Plus / Minus Query: 1 taaaaacgccactgcaaatacatttattgtaattttgaaacacccgccacccatcagcaa 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1957 taaaaacgccactgcaaatacatttattgtaattttgaaacacccgccacccatcagcaa 1898 Query: 61 gctcagggaaacgtatttgatccacgcatgggaggtggaccatcaacagtctcctcgatg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1897 gctcagggaaacgtatttgatccacgcatgggaggtggaccatcaacagtctcctcgatg 1838 Query: 121 agcagcggcgagctccagcgcattaggaagtaggcagatccggatttatcgtttgtcccg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1837 agcagcggcgagctccagcgcattaggaagtaggcagatccggatttatcgtttgtcccg 1778 Query: 181 gacaaccgatttccaccaaagggagtcagcccgtacgtgctacccgtgcatcgctcattc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1777 gacaaccgatttccaccaaagggagtcagcccgtacgtgctacccgtgcatcgctcattc 1718 Query: 241 acgtagagattactagcggacattcgcagttggttcaggcagtgaaggataacctcatcc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1717 acgtagagattactagcggacattcgcagttggttcaggcagtgaaggataacctcatcc 1658 Query: 301 tgacttgcgaatatggagccggagagcgcgtatctggactgattggcggcaagcttgaga 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1657 tgacttgcgaatatggagccggagagcgcgtatctggactgattggcggcaagcttgaga 1598 Query: 361 gcctcactgaaggaatcgtccgaatagacgaacaccggcaagaacggtccgcagcagggc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1597 gcctcactgaaggaatcgtccgaatagacgaacaccggcaagaacggtccgcagcagggc 1538 Query: 421 tcacacagcagtggatccaatggatccgacacccggacaatcgttggatcaacgaatcta 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1537 tcacacagcagtggatccaatggatccgacacccggacaatcgttggatcaacgaatcta 1478 Query: 481 ccagtgctgtcatcacagctgcctccgcacaactgctccatgttcttggtgcgctgcagt 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1477 ccagtgctgtcatcacagctgcctccgcacaactgctccatgttcttggtgcgctgcagt 1418 Query: 541 agtttctgcatccgcc-gaagtcatttatatgcaccatcgctcctatatccgtttccgat 599 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1417 agtttctgcatccgccggaagtcatttatatgcaccatcgctcctatatccgtttccgat 1358 Query: 600 tcgatgggggtctccgatggtcagttgctccgtggcctccancaactcct 649 ||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1357 tcgat-ggggtctccgatggtcagttgctccgtggcctccaccaactcct 1309 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,267 Number of Sequences: 18737 Number of extensions: 14267 Number of successful extensions: 378 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 375 Number of HSP's gapped (non-prelim): 1 length of query: 650 length of database: 41,270,998 effective HSP length: 17 effective length of query: 633 effective length of database: 40,952,469 effective search space: 25922912877 effective search space used: 25922912877 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA440080|DMAA40080 LD15161.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD15161 5prime similar to M20571: D.melanogaster enhancer of split mRNA, complete cds, mRNA sequence. (559 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value gro-RD feature: mRNA loc=3R:join(21857217..21857271,21858082..21... 989 0.0 gro-RC feature: mRNA loc=3R:join(21857907..21857990,21858082..21... 989 0.0 gro-RB feature: mRNA loc=3R:join(21856797..21856988,21858082..21... 989 0.0 gro-RA feature: mRNA loc=3R:join(21857217..21857351,21858082..21... 989 0.0 gro-RE feature: mRNA loc=3R:join(21856797..21856988,21858082..21... 632 0.0 >gro-RD feature: mRNA loc=3R:join(21857217..21857271,21858082..21858466, 21858602..21858696,21859397..21859460,21859531..21859713, 21860556..21860750,21860816..21860914,21861623..21861679, 21861820..21861996,21862061..21862332,21862583..21863256, 21863323..21863522, 21863585..21864999);ID=FBan0008384;gene_id=FBgn0001139;ge ne_sym=gro;sym=CG8384;scaffold=AE003754;len=3871 Length = 3871 Score = 989 bits (499), Expect = 0.0 Identities = 542/551 (98%), Gaps = 4/551 (0%) Strand = Plus / Plus Query: 6 cattatgttatgtactacgagatgtcctatggccttaacgtggagatgcacaagcagacc 65 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 588 cattatgttatgtactacgagatgtcctatggccttaacgtggagatgcacaagcagacc 647 Query: 66 gagatcgccaagcggctgaacacactgatcaaccagctacttccattccttcaggccgac 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 648 gagatcgccaagcggctgaacacactgatcaaccagctacttccattccttcaggccgac 707 Query: 126 caccagcagcaagtgctgcaggcggtggagcgggcgaa-caggctgaccatgcaggagct 184 |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct: 708 caccagcagcaagtgctgcaggcggtggagcgggcgaagcagg-tgaccatgcaggagct 766 Query: 185 caacctgatcattgggcaacagatccacgcccagcaggtgccaggtggaccacctcagcc 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 767 caacctgatcattgggcaacagatccacgcccagcaggtgccaggtggaccacctcagcc 826 Query: 245 gatgggcgcactgaatccgtttggcgccctggcagcc-cattgggcctgccacacggacc 303 |||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||| Sbjct: 827 gatgggcgcactgaatccgtttggcgccctgggcgccaccatgggcctgccacacggacc 886 Query: 304 gcaa-gtctgctgaacaaaccgcccgaacaccacaggccggacatcaagccgacgggtct 362 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 887 gcaaggtctgctgaacaaaccgcccgaacaccacaggccggacatcaagccgacgggtct 946 Query: 363 agaggggccagcagccgccgaggagcgattgcgcaattcggtttcgccggccgatcgtga 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 947 agaggggccagcagccgccgaggagcgattgcgcaattcggtttcgccggccgatcgtga 1006 Query: 423 gaagtatcgcacacgctcgccgctggacatcgagaacgactcgaagcgtcgaaaagatga 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1007 gaagtatcgcacacgctcgccgctggacatcgagaacgactcgaagcgtcgaaaagatga 1066 Query: 483 gaaactgcaagaggatgaaggcgagaagagcgatcaagatttagtcgtagatgttgcaaa 542 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1067 gaaactgcaagaggatgaaggcgagaaaagcgatcaagatttagtcgtagatgttgcaaa 1126 Query: 543 tgaaatggaat 553 ||||||||||| Sbjct: 1127 tgaaatggaat 1137 >gro-RC feature: mRNA loc=3R:join(21857907..21857990,21858082..21858466, 21858602..21858696,21859397..21859460,21859531..21859713, 21860556..21860750,21860816..21860914,21861623..21861679, 21861820..21861996,21862061..21862332,21862583..21863256, 21863323..21863522, 21863585..21864999);ID=FBan0008384;gene_id=FBgn0001139;ge ne_sym=gro;sym=CG8384;scaffold=AE003754;len=3900 Length = 3900 Score = 989 bits (499), Expect = 0.0 Identities = 542/551 (98%), Gaps = 4/551 (0%) Strand = Plus / Plus Query: 6 cattatgttatgtactacgagatgtcctatggccttaacgtggagatgcacaagcagacc 65 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 617 cattatgttatgtactacgagatgtcctatggccttaacgtggagatgcacaagcagacc 676 Query: 66 gagatcgccaagcggctgaacacactgatcaaccagctacttccattccttcaggccgac 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 677 gagatcgccaagcggctgaacacactgatcaaccagctacttccattccttcaggccgac 736 Query: 126 caccagcagcaagtgctgcaggcggtggagcgggcgaa-caggctgaccatgcaggagct 184 |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct: 737 caccagcagcaagtgctgcaggcggtggagcgggcgaagcagg-tgaccatgcaggagct 795 Query: 185 caacctgatcattgggcaacagatccacgcccagcaggtgccaggtggaccacctcagcc 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 796 caacctgatcattgggcaacagatccacgcccagcaggtgccaggtggaccacctcagcc 855 Query: 245 gatgggcgcactgaatccgtttggcgccctggcagcc-cattgggcctgccacacggacc 303 |||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||| Sbjct: 856 gatgggcgcactgaatccgtttggcgccctgggcgccaccatgggcctgccacacggacc 915 Query: 304 gcaa-gtctgctgaacaaaccgcccgaacaccacaggccggacatcaagccgacgggtct 362 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 916 gcaaggtctgctgaacaaaccgcccgaacaccacaggccggacatcaagccgacgggtct 975 Query: 363 agaggggccagcagccgccgaggagcgattgcgcaattcggtttcgccggccgatcgtga 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 976 agaggggccagcagccgccgaggagcgattgcgcaattcggtttcgccggccgatcgtga 1035 Query: 423 gaagtatcgcacacgctcgccgctggacatcgagaacgactcgaagcgtcgaaaagatga 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1036 gaagtatcgcacacgctcgccgctggacatcgagaacgactcgaagcgtcgaaaagatga 1095 Query: 483 gaaactgcaagaggatgaaggcgagaagagcgatcaagatttagtcgtagatgttgcaaa 542 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1096 gaaactgcaagaggatgaaggcgagaaaagcgatcaagatttagtcgtagatgttgcaaa 1155 Query: 543 tgaaatggaat 553 ||||||||||| Sbjct: 1156 tgaaatggaat 1166 >gro-RB feature: mRNA loc=3R:join(21856797..21856988,21858082..21858466, 21858602..21858696,21859397..21859460,21859531..21859713, 21860556..21860750,21860816..21860914,21861623..21861679, 21861820..21861996,21862061..21862332,21862583..21863256, 21863323..21863522, 21863585..21864999);ID=FBan0008384;gene_id=FBgn0001139;ge ne_sym=gro;sym=CG8384;scaffold=AE003754;len=4008 Length = 4008 Score = 989 bits (499), Expect = 0.0 Identities = 542/551 (98%), Gaps = 4/551 (0%) Strand = Plus / Plus Query: 6 cattatgttatgtactacgagatgtcctatggccttaacgtggagatgcacaagcagacc 65 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 725 cattatgttatgtactacgagatgtcctatggccttaacgtggagatgcacaagcagacc 784 Query: 66 gagatcgccaagcggctgaacacactgatcaaccagctacttccattccttcaggccgac 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 785 gagatcgccaagcggctgaacacactgatcaaccagctacttccattccttcaggccgac 844 Query: 126 caccagcagcaagtgctgcaggcggtggagcgggcgaa-caggctgaccatgcaggagct 184 |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct: 845 caccagcagcaagtgctgcaggcggtggagcgggcgaagcagg-tgaccatgcaggagct 903 Query: 185 caacctgatcattgggcaacagatccacgcccagcaggtgccaggtggaccacctcagcc 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 904 caacctgatcattgggcaacagatccacgcccagcaggtgccaggtggaccacctcagcc 963 Query: 245 gatgggcgcactgaatccgtttggcgccctggcagcc-cattgggcctgccacacggacc 303 |||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||| Sbjct: 964 gatgggcgcactgaatccgtttggcgccctgggcgccaccatgggcctgccacacggacc 1023 Query: 304 gcaa-gtctgctgaacaaaccgcccgaacaccacaggccggacatcaagccgacgggtct 362 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1024 gcaaggtctgctgaacaaaccgcccgaacaccacaggccggacatcaagccgacgggtct 1083 Query: 363 agaggggccagcagccgccgaggagcgattgcgcaattcggtttcgccggccgatcgtga 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1084 agaggggccagcagccgccgaggagcgattgcgcaattcggtttcgccggccgatcgtga 1143 Query: 423 gaagtatcgcacacgctcgccgctggacatcgagaacgactcgaagcgtcgaaaagatga 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1144 gaagtatcgcacacgctcgccgctggacatcgagaacgactcgaagcgtcgaaaagatga 1203 Query: 483 gaaactgcaagaggatgaaggcgagaagagcgatcaagatttagtcgtagatgttgcaaa 542 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1204 gaaactgcaagaggatgaaggcgagaaaagcgatcaagatttagtcgtagatgttgcaaa 1263 Query: 543 tgaaatggaat 553 ||||||||||| Sbjct: 1264 tgaaatggaat 1274 >gro-RA feature: mRNA loc=3R:join(21857217..21857351,21858082..21858466, 21858602..21858696,21859397..21859460,21859531..21859713, 21860556..21860750,21860816..21860914,21861623..21861679, 21861820..21861996,21862061..21862332,21862583..21863256, 21863323..21863522, 21863585..21864999);ID=FBan0008384;gene_id=FBgn0001139;ge ne_sym=gro;sym=CG8384;scaffold=AE003754;len=3951 Length = 3951 Score = 989 bits (499), Expect = 0.0 Identities = 542/551 (98%), Gaps = 4/551 (0%) Strand = Plus / Plus Query: 6 cattatgttatgtactacgagatgtcctatggccttaacgtggagatgcacaagcagacc 65 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 668 cattatgttatgtactacgagatgtcctatggccttaacgtggagatgcacaagcagacc 727 Query: 66 gagatcgccaagcggctgaacacactgatcaaccagctacttccattccttcaggccgac 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 728 gagatcgccaagcggctgaacacactgatcaaccagctacttccattccttcaggccgac 787 Query: 126 caccagcagcaagtgctgcaggcggtggagcgggcgaa-caggctgaccatgcaggagct 184 |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct: 788 caccagcagcaagtgctgcaggcggtggagcgggcgaagcagg-tgaccatgcaggagct 846 Query: 185 caacctgatcattgggcaacagatccacgcccagcaggtgccaggtggaccacctcagcc 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 847 caacctgatcattgggcaacagatccacgcccagcaggtgccaggtggaccacctcagcc 906 Query: 245 gatgggcgcactgaatccgtttggcgccctggcagcc-cattgggcctgccacacggacc 303 |||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||| Sbjct: 907 gatgggcgcactgaatccgtttggcgccctgggcgccaccatgggcctgccacacggacc 966 Query: 304 gcaa-gtctgctgaacaaaccgcccgaacaccacaggccggacatcaagccgacgggtct 362 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 967 gcaaggtctgctgaacaaaccgcccgaacaccacaggccggacatcaagccgacgggtct 1026 Query: 363 agaggggccagcagccgccgaggagcgattgcgcaattcggtttcgccggccgatcgtga 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1027 agaggggccagcagccgccgaggagcgattgcgcaattcggtttcgccggccgatcgtga 1086 Query: 423 gaagtatcgcacacgctcgccgctggacatcgagaacgactcgaagcgtcgaaaagatga 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1087 gaagtatcgcacacgctcgccgctggacatcgagaacgactcgaagcgtcgaaaagatga 1146 Query: 483 gaaactgcaagaggatgaaggcgagaagagcgatcaagatttagtcgtagatgttgcaaa 542 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1147 gaaactgcaagaggatgaaggcgagaaaagcgatcaagatttagtcgtagatgttgcaaa 1206 Query: 543 tgaaatggaat 553 ||||||||||| Sbjct: 1207 tgaaatggaat 1217 >gro-RE feature: mRNA loc=3R:join(21856797..21856988,21858082..21858466, 21858602..21858696,21859397..21859460,21859531..21859713, 21860091..21860123,21860556..21860750,21860816..21860914, 21861623..21861679,21861820..21861996,21862061..21862332, 21862583..21863256,21863323..21863522, 21863585..21864999);ID=FBan0008384;gene_id=FBgn0001139;ge ne_sym=gro;sym=CG8384;scaffold=AE003754;len=4041 Length = 4041 Score = 632 bits (319), Expect = 0.0 Identities = 348/355 (98%), Gaps = 2/355 (0%) Strand = Plus / Plus Query: 201 caacagatccacgcccagcaggtgccaggtggaccacctcagccgatgggcgcactgaat 260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 953 caacagatccacgcccagcaggtgccaggtggaccacctcagccgatgggcgcactgaat 1012 Query: 261 ccgtttggcgccctggcagcc-cattgggcctgccacacggaccgcaag-tctgctgaac 318 |||||||||||||||| ||| | |||||||||||||||||||||||| |||||||||| Sbjct: 1013 ccgtttggcgccctgggcgccaccatgggcctgccacacggaccgcaaggtctgctgaac 1072 Query: 319 aaaccgcccgaacaccacaggccggacatcaagccgacgggtctagaggggccagcagcc 378 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1073 aaaccgcccgaacaccacaggccggacatcaagccgacgggtctagaggggccagcagcc 1132 Query: 379 gccgaggagcgattgcgcaattcggtttcgccggccgatcgtgagaagtatcgcacacgc 438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1133 gccgaggagcgattgcgcaattcggtttcgccggccgatcgtgagaagtatcgcacacgc 1192 Query: 439 tcgccgctggacatcgagaacgactcgaagcgtcgaaaagatgagaaactgcaagaggat 498 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1193 tcgccgctggacatcgagaacgactcgaagcgtcgaaaagatgagaaactgcaagaggat 1252 Query: 499 gaaggcgagaagagcgatcaagatttagtcgtagatgttgcaaatgaaatggaat 553 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1253 gaaggcgagaaaagcgatcaagatttagtcgtagatgttgcaaatgaaatggaat 1307 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,838 Number of Sequences: 18737 Number of extensions: 16838 Number of successful extensions: 483 Number of sequences better than 1.0e-100: 5 Number of HSP's better than 0.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 467 Number of HSP's gapped (non-prelim): 6 length of query: 559 length of database: 41,270,998 effective HSP length: 17 effective length of query: 542 effective length of database: 40,952,469 effective search space: 22196238198 effective search space used: 22196238198 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA440503|DMAA40503 LD13774.3prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD13774 3prime, mRNA sequence. (319 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value mei-S332-RA feature: mRNA loc=2R:join(17165652..17165751,1716645... 436 e-122 >mei-S332-RA feature: mRNA loc=2R:join(17165652..17165751,17166454..17167025, 17167087..17168119);ID=FBan0005303;gene_id=FBgn0002715;ge ne_sym=mei-S332;sym=CG5303;scaffold=AE003456;len=1705 Length = 1705 Score = 436 bits (220), Expect = e-122 Identities = 240/247 (97%) Strand = Plus / Minus Query: 73 ttgggtggtgatgatgatggagtgtcctccttccgataacgccggaagaactgaatatgc 132 ||||||| |||||||||||||||||| ||||||||||| ||| ||| ||||||||||||| Sbjct: 1631 ttgggtgatgatgatgatggagtgtcttccttccgatagcgctggatgaactgaatatgc 1572 Query: 133 cctctattggaggcaaaaagtaatccgatgtcagcttntagtctataaattaaacttatc 192 ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1571 cctctattgcaggcaaaaagtaatccgatgtcagcttttagtctataaattaaacttatc 1512 Query: 193 agggcctgacgatttaaaaatattattcatattaaaaatggtaaaaagtggtattgaaaa 252 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1511 agggcctgacgatttaaaaatattattcatattaaaaatggtaaaaagtggtattgaaaa 1452 Query: 253 ccaatgaaattacagaaacaacattaaagcctattaaaaaattcgtctatctactttttg 312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1451 ccaatgaaattacagaaacaacattaaagcctattaaaaaattcgtctatctactttttg 1392 Query: 313 gccttgg 319 ||||||| Sbjct: 1391 gccttgg 1385 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7570 Number of Sequences: 18737 Number of extensions: 7570 Number of successful extensions: 655 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 653 Number of HSP's gapped (non-prelim): 1 length of query: 319 length of database: 41,270,998 effective HSP length: 16 effective length of query: 303 effective length of database: 40,971,206 effective search space: 12414275418 effective search space used: 12414275418 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA440644|DM1239842 LD15491.3prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD15491 3prime, mRNA sequence. (476 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Eno-RE feature: mRNA loc=2L:complement(1726636..1728320,1729311.... 549 e-156 Eno-RD feature: mRNA loc=2L:complement(1726636..1728320,1729311.... 549 e-156 Eno-RC feature: mRNA loc=2L:complement(1726636..1728320,1729311.... 549 e-156 Eno-RB feature: mRNA loc=2L:complement(1726636..1728320,1729311.... 549 e-156 Eno-RA feature: mRNA loc=2L:complement(1726636..1728320,1729311.... 549 e-156 >Eno-RE feature: mRNA loc=2L:complement(1726636..1728320,1729311..1729545, 1729719..1729897, 1730940..1731243);ID=FBan0017654;gene_id=FBgn0000579;gene _sym=Eno;sym=CG17654;scaffold=AE003585;len=2403 Length = 2403 Score = 549 bits (277), Expect = e-156 Identities = 277/277 (100%) Strand = Plus / Minus Query: 200 tttggtgtttgtgtagatcaatttataatttcataacgattacagcgattacattgaaga 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2403 tttggtgtttgtgtagatcaatttataatttcataacgattacagcgattacattgaaga 2344 Query: 260 tattcaaagctctcggcaactgaacgaatatcttgcacatagtgttttttattcttttgt 319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2343 tattcaaagctctcggcaactgaacgaatatcttgcacatagtgttttttattcttttgt 2284 Query: 320 ttataaataatgattagatcaaggtttagcattaattaataatgtctaagaacgaagcat 379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2283 ttataaataatgattagatcaaggtttagcattaattaataatgtctaagaacgaagcat 2224 Query: 380 agagacagcaaatgggtttggtagtttaattctgatgtatttgtgcgccagacacaagtt 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2223 agagacagcaaatgggtttggtagtttaattctgatgtatttgtgcgccagacacaagtt 2164 Query: 440 ccgaacgtaaaaggttgacgaacacgtgcaccgccgc 476 ||||||||||||||||||||||||||||||||||||| Sbjct: 2163 ccgaacgtaaaaggttgacgaacacgtgcaccgccgc 2127 >Eno-RD feature: mRNA loc=2L:complement(1726636..1728320,1729311..1729545, 1729719..1729897, 1730027..1730080);ID=FBan0017654;gene_id=FBgn0000579;gene _sym=Eno;sym=CG17654;scaffold=AE003585;len=2153 Length = 2153 Score = 549 bits (277), Expect = e-156 Identities = 277/277 (100%) Strand = Plus / Minus Query: 200 tttggtgtttgtgtagatcaatttataatttcataacgattacagcgattacattgaaga 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2153 tttggtgtttgtgtagatcaatttataatttcataacgattacagcgattacattgaaga 2094 Query: 260 tattcaaagctctcggcaactgaacgaatatcttgcacatagtgttttttattcttttgt 319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2093 tattcaaagctctcggcaactgaacgaatatcttgcacatagtgttttttattcttttgt 2034 Query: 320 ttataaataatgattagatcaaggtttagcattaattaataatgtctaagaacgaagcat 379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2033 ttataaataatgattagatcaaggtttagcattaattaataatgtctaagaacgaagcat 1974 Query: 380 agagacagcaaatgggtttggtagtttaattctgatgtatttgtgcgccagacacaagtt 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1973 agagacagcaaatgggtttggtagtttaattctgatgtatttgtgcgccagacacaagtt 1914 Query: 440 ccgaacgtaaaaggttgacgaacacgtgcaccgccgc 476 ||||||||||||||||||||||||||||||||||||| Sbjct: 1913 ccgaacgtaaaaggttgacgaacacgtgcaccgccgc 1877 >Eno-RC feature: mRNA loc=2L:complement(1726636..1728320,1729311..1729545, 1729719..1729897, 1729968..1730124);ID=FBan0017654;gene_id=FBgn0000579;gene _sym=Eno;sym=CG17654;scaffold=AE003585;len=2256 Length = 2256 Score = 549 bits (277), Expect = e-156 Identities = 277/277 (100%) Strand = Plus / Minus Query: 200 tttggtgtttgtgtagatcaatttataatttcataacgattacagcgattacattgaaga 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2256 tttggtgtttgtgtagatcaatttataatttcataacgattacagcgattacattgaaga 2197 Query: 260 tattcaaagctctcggcaactgaacgaatatcttgcacatagtgttttttattcttttgt 319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2196 tattcaaagctctcggcaactgaacgaatatcttgcacatagtgttttttattcttttgt 2137 Query: 320 ttataaataatgattagatcaaggtttagcattaattaataatgtctaagaacgaagcat 379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2136 ttataaataatgattagatcaaggtttagcattaattaataatgtctaagaacgaagcat 2077 Query: 380 agagacagcaaatgggtttggtagtttaattctgatgtatttgtgcgccagacacaagtt 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2076 agagacagcaaatgggtttggtagtttaattctgatgtatttgtgcgccagacacaagtt 2017 Query: 440 ccgaacgtaaaaggttgacgaacacgtgcaccgccgc 476 ||||||||||||||||||||||||||||||||||||| Sbjct: 2016 ccgaacgtaaaaggttgacgaacacgtgcaccgccgc 1980 >Eno-RB feature: mRNA loc=2L:complement(1726636..1728320,1729311..1729545, 1729719..1729897, 1731215..1731294);ID=FBan0017654;gene_id=FBgn0000579;gene _sym=Eno;sym=CG17654;scaffold=AE003585;len=2179 Length = 2179 Score = 549 bits (277), Expect = e-156 Identities = 277/277 (100%) Strand = Plus / Minus Query: 200 tttggtgtttgtgtagatcaatttataatttcataacgattacagcgattacattgaaga 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2179 tttggtgtttgtgtagatcaatttataatttcataacgattacagcgattacattgaaga 2120 Query: 260 tattcaaagctctcggcaactgaacgaatatcttgcacatagtgttttttattcttttgt 319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2119 tattcaaagctctcggcaactgaacgaatatcttgcacatagtgttttttattcttttgt 2060 Query: 320 ttataaataatgattagatcaaggtttagcattaattaataatgtctaagaacgaagcat 379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2059 ttataaataatgattagatcaaggtttagcattaattaataatgtctaagaacgaagcat 2000 Query: 380 agagacagcaaatgggtttggtagtttaattctgatgtatttgtgcgccagacacaagtt 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1999 agagacagcaaatgggtttggtagtttaattctgatgtatttgtgcgccagacacaagtt 1940 Query: 440 ccgaacgtaaaaggttgacgaacacgtgcaccgccgc 476 ||||||||||||||||||||||||||||||||||||| Sbjct: 1939 ccgaacgtaaaaggttgacgaacacgtgcaccgccgc 1903 >Eno-RA feature: mRNA loc=2L:complement(1726636..1728320, 1729311..1729378);ID=FBan0017654;gene_id=FBgn0000579;gene _sym=Eno;sym=CG17654;scaffold=AE003585;len=1753 Length = 1753 Score = 549 bits (277), Expect = e-156 Identities = 277/277 (100%) Strand = Plus / Minus Query: 200 tttggtgtttgtgtagatcaatttataatttcataacgattacagcgattacattgaaga 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1753 tttggtgtttgtgtagatcaatttataatttcataacgattacagcgattacattgaaga 1694 Query: 260 tattcaaagctctcggcaactgaacgaatatcttgcacatagtgttttttattcttttgt 319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1693 tattcaaagctctcggcaactgaacgaatatcttgcacatagtgttttttattcttttgt 1634 Query: 320 ttataaataatgattagatcaaggtttagcattaattaataatgtctaagaacgaagcat 379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1633 ttataaataatgattagatcaaggtttagcattaattaataatgtctaagaacgaagcat 1574 Query: 380 agagacagcaaatgggtttggtagtttaattctgatgtatttgtgcgccagacacaagtt 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1573 agagacagcaaatgggtttggtagtttaattctgatgtatttgtgcgccagacacaagtt 1514 Query: 440 ccgaacgtaaaaggttgacgaacacgtgcaccgccgc 476 ||||||||||||||||||||||||||||||||||||| Sbjct: 1513 ccgaacgtaaaaggttgacgaacacgtgcaccgccgc 1477 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9731 Number of Sequences: 18737 Number of extensions: 9731 Number of successful extensions: 195 Number of sequences better than 1.0e-100: 5 Number of HSP's better than 0.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 190 Number of HSP's gapped (non-prelim): 5 length of query: 476 length of database: 41,270,998 effective HSP length: 17 effective length of query: 459 effective length of database: 40,952,469 effective search space: 18797183271 effective search space used: 18797183271 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA441644|DM1240842 LD16643.3prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD16643 3prime, mRNA sequence. (619 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,790 Number of Sequences: 18737 Number of extensions: 10790 Number of successful extensions: 202 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 202 Number of HSP's gapped (non-prelim): 0 length of query: 619 length of database: 41,270,998 effective HSP length: 17 effective length of query: 602 effective length of database: 40,952,469 effective search space: 24653386338 effective search space used: 24653386338 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA567100|AA567100 GM01072.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM01072 5prime, mRNA sequence. (470 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG3191-RA feature: mRNA loc=X:complement(2006911..2007159,200721... 831 0.0 >CG3191-RA feature: mRNA loc=X:complement(2006911..2007159,2007216..2007352, 2007419..2007721,2007785..2007866,2007967..2008126, 2008444..2008756);ID=FBan0003191;gene_id=FBgn0023525;gen e_sym=CG3191;sym=CG3191;scaffold=AE003423;len=1244 Length = 1244 Score = 831 bits (419), Expect = 0.0 Identities = 460/471 (97%), Gaps = 2/471 (0%) Strand = Plus / Plus Query: 1 cccaaaggtttaaaagtgattcgaaagcgtttttgaaagtgattcgaaagcgattgctgc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 13 cccaaaggtttaaaagtgattcgaaagcgtttttgaaagtgattcgaaagcgattgctgc 72 Query: 61 gtccgatagccgatagcagaccaacctggcggagggagcagcgacggagcaatcgatacc 120 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 73 gtccgatagccgatagcagaccaacctggcggagggaacagcgacggagcaatcgatacc 132 Query: 121 caggccacagcaccaatgagccgcataggtgtgagagagactgggccgagcggtacgtcc 180 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 133 caggccacagcaccaatgagccgcataggtgtgagagagactggggcgagcggtacgtcc 192 Query: 181 gagcagctgcagcgcgaacaggatagcgacacatcggaacaggcggtgcggaa-caggcc 239 |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct: 193 gagcagctgcagcgggaacaggatagcgacacatcggaacaggcggtgcggaagcagg-a 251 Query: 240 acgggatctcaaggagctcctcgagtggttccggcagaatgacaagctgcccaaggagat 299 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 252 acgggatctcaaggagctcctcgagtggttccggcaaaatgacaagctgcccaaggagat 311 Query: 300 tgatccgctgctgctccggcgcttctaccagtgcatgtttggagacgtggaggagactcg 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 312 tgatccgctgctgctccggcgcttctaccagtgcatgtttggagacgtggaggagactcg 371 Query: 360 gaagctcatcgaggtgaactacgccctggacaaccggcagcctcacctgtttatcaagag 419 |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| Sbjct: 372 gaagctcatcgaggtgaactacgccctgcgcaaccggcaccctcacctgtttatcaagag 431 Query: 420 ggatcctctagacgcggacagcaagcgcacctttgactaggcagacattct 470 ||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 432 ggatcctctagacgcggacagcaagcgcacctttgactacgcagacattct 482 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,930 Number of Sequences: 18737 Number of extensions: 13930 Number of successful extensions: 370 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 366 Number of HSP's gapped (non-prelim): 1 length of query: 470 length of database: 41,270,998 effective HSP length: 17 effective length of query: 453 effective length of database: 40,952,469 effective search space: 18551468457 effective search space used: 18551468457 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA567604|AA567604 HL01520.5prime HL Drosophila melanogaster head BlueScript Drosophila melanogaster cDNA clone HL01520 5 similar to Mhc: FBan0017927 GO:[motor protein (GO:0003774)] located on: 2L 36A8-36A9;: 08/13/2002, mRNA sequence. (777 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Mhc-RM feature: mRNA loc=2L:join(16746663..16746968,16747543..16... 938 0.0 Mhc-RL feature: mRNA loc=2L:join(16746663..16746968,16747543..16... 938 0.0 Mhc-RK feature: mRNA loc=2L:join(16746663..16746968,16747543..16... 938 0.0 Mhc-RJ feature: mRNA loc=2L:join(16746663..16746968,16747231..16... 938 0.0 Mhc-RI feature: mRNA loc=2L:join(16746663..16746968,16747543..16... 938 0.0 Mhc-RH feature: mRNA loc=2L:join(16746663..16746968,16747543..16... 938 0.0 Mhc-RG feature: mRNA loc=2L:join(16746663..16746968,16747231..16... 938 0.0 Mhc-RF feature: mRNA loc=2L:join(16746663..16746968,16747543..16... 938 0.0 Mhc-RE feature: mRNA loc=2L:join(16746663..16746968,16747231..16... 938 0.0 Mhc-RD feature: mRNA loc=2L:join(16746663..16746968,16747543..16... 938 0.0 Mhc-RC feature: mRNA loc=2L:join(16746663..16746968,16747231..16... 938 0.0 Mhc-RB feature: mRNA loc=2L:join(16746663..16746968,16747543..16... 938 0.0 Mhc-RA feature: mRNA loc=2L:join(16746663..16746968,16747543..16... 938 0.0 >Mhc-RM feature: mRNA loc=2L:join(16746663..16746968,16747543..16747686, 16748541..16748921,16748995..16749058,16749127..16749225, 16751361..16751464,16752534..16752941,16753767..16753937, 16754934..16755523,16756474..16756591,16758634..16758897, 16760428..16760637,16760859..16761745,16761917..16761995, 16762750..16763925,16763993..16764898,16765163..16765641, 16766105..16766850);ID=FBan0017927;gene_id=FBgn0002741;ge ne_sym=Mhc;sym=CG17927;scaffold=AE003652;len=7132 Length = 7132 Score = 938 bits (473), Expect = 0.0 Identities = 487/494 (98%) Strand = Plus / Minus Query: 1 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7088 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 7029 Query: 61 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7028 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 6969 Query: 121 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6968 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 6909 Query: 181 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6908 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 6849 Query: 241 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6848 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 6789 Query: 301 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6788 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 6729 Query: 361 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6728 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 6669 Query: 421 gtgatcgattgttgttatatgattttannnnnnngcctaagtgcatctggcgttgttggt 480 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 6668 gtgatcgattgttgttatatgattttatttttttgcctaagtgcatctggcgttgttggt 6609 Query: 481 ggtttgcctcccgt 494 |||||||||||||| Sbjct: 6608 ggtttgcctcccgt 6595 >Mhc-RL feature: mRNA loc=2L:join(16746663..16746968,16747543..16747686, 16748541..16748921,16748995..16749058,16749127..16749225, 16751361..16751464,16752534..16752941,16753295..16753465, 16754934..16755523,16756474..16756591,16758634..16758897, 16760428..16760637,16760859..16761745,16761917..16761995, 16762750..16763925,16763993..16764898,16765163..16765641, 16766105..16766850);ID=FBan0017927;gene_id=FBgn0002741;ge ne_sym=Mhc;sym=CG17927;scaffold=AE003652;len=7132 Length = 7132 Score = 938 bits (473), Expect = 0.0 Identities = 487/494 (98%) Strand = Plus / Minus Query: 1 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7088 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 7029 Query: 61 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7028 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 6969 Query: 121 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6968 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 6909 Query: 181 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6908 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 6849 Query: 241 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6848 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 6789 Query: 301 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6788 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 6729 Query: 361 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6728 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 6669 Query: 421 gtgatcgattgttgttatatgattttannnnnnngcctaagtgcatctggcgttgttggt 480 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 6668 gtgatcgattgttgttatatgattttatttttttgcctaagtgcatctggcgttgttggt 6609 Query: 481 ggtttgcctcccgt 494 |||||||||||||| Sbjct: 6608 ggtttgcctcccgt 6595 >Mhc-RK feature: mRNA loc=2L:join(16746663..16746968,16747543..16747686, 16748541..16748921,16748995..16749058,16749127..16749225, 16751361..16751464,16752534..16752941,16753295..16753465, 16754934..16755523,16755715..16755832,16758634..16758897, 16760428..16760637,16760859..16761745,16761917..16761995, 16762750..16763925,16763993..16764898,16765163..16765641, 16766105..16766850);ID=FBan0017927;gene_id=FBgn0002741;ge ne_sym=Mhc;sym=CG17927;scaffold=AE003652;len=7132 Length = 7132 Score = 938 bits (473), Expect = 0.0 Identities = 487/494 (98%) Strand = Plus / Minus Query: 1 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7088 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 7029 Query: 61 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7028 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 6969 Query: 121 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6968 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 6909 Query: 181 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6908 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 6849 Query: 241 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6848 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 6789 Query: 301 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6788 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 6729 Query: 361 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6728 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 6669 Query: 421 gtgatcgattgttgttatatgattttannnnnnngcctaagtgcatctggcgttgttggt 480 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 6668 gtgatcgattgttgttatatgattttatttttttgcctaagtgcatctggcgttgttggt 6609 Query: 481 ggtttgcctcccgt 494 |||||||||||||| Sbjct: 6608 ggtttgcctcccgt 6595 >Mhc-RJ feature: mRNA loc=2L:join(16746663..16746968,16747231..16747374, 16748541..16748921,16748995..16749058,16749127..16749225, 16750026..16750123,16752534..16752941,16753767..16753937, 16754934..16755523,16757812..16757929,16758634..16758897, 16760428..16760637,16760859..16761745,16762335..16762413, 16762750..16763925,16763993..16764898, 16766105..16766850);ID=FBan0017927;gene_id=FBgn0002741;ge ne_sym=Mhc;sym=CG17927;scaffold=AE003652;len=6647 Length = 6647 Score = 938 bits (473), Expect = 0.0 Identities = 487/494 (98%) Strand = Plus / Minus Query: 1 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6603 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 6544 Query: 61 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6543 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 6484 Query: 121 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6483 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 6424 Query: 181 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6423 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 6364 Query: 241 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6363 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 6304 Query: 301 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6303 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 6244 Query: 361 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6243 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 6184 Query: 421 gtgatcgattgttgttatatgattttannnnnnngcctaagtgcatctggcgttgttggt 480 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 6183 gtgatcgattgttgttatatgattttatttttttgcctaagtgcatctggcgttgttggt 6124 Query: 481 ggtttgcctcccgt 494 |||||||||||||| Sbjct: 6123 ggtttgcctcccgt 6110 >Mhc-RI feature: mRNA loc=2L:join(16746663..16746968,16747543..16747686, 16748541..16748921,16748995..16749058,16749127..16749225, 16749427..16749530,16752534..16752941,16754347..16754517, 16754934..16755523,16757177..16757294,16758634..16758897, 16760428..16760637,16760859..16761745,16762335..16762413, 16762750..16763925,16763993..16764898, 16766105..16766850);ID=FBan0017927;gene_id=FBgn0002741;ge ne_sym=Mhc;sym=CG17927;scaffold=AE003652;len=6653 Length = 6653 Score = 938 bits (473), Expect = 0.0 Identities = 487/494 (98%) Strand = Plus / Minus Query: 1 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6609 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 6550 Query: 61 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6549 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 6490 Query: 121 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6489 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 6430 Query: 181 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6429 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 6370 Query: 241 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6369 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 6310 Query: 301 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6309 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 6250 Query: 361 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6249 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 6190 Query: 421 gtgatcgattgttgttatatgattttannnnnnngcctaagtgcatctggcgttgttggt 480 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 6189 gtgatcgattgttgttatatgattttatttttttgcctaagtgcatctggcgttgttggt 6130 Query: 481 ggtttgcctcccgt 494 |||||||||||||| Sbjct: 6129 ggtttgcctcccgt 6116 >Mhc-RH feature: mRNA loc=2L:join(16746663..16746968,16747543..16747686, 16748541..16748921,16748995..16749058,16749127..16749225, 16749427..16749530,16752534..16752941,16754347..16754517, 16754934..16755523,16757812..16757929,16758634..16758897, 16760428..16760637,16760859..16761745,16762335..16762413, 16762750..16763925,16763993..16764898, 16766105..16766850);ID=FBan0017927;gene_id=FBgn0002741;ge ne_sym=Mhc;sym=CG17927;scaffold=AE003652;len=6653 Length = 6653 Score = 938 bits (473), Expect = 0.0 Identities = 487/494 (98%) Strand = Plus / Minus Query: 1 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6609 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 6550 Query: 61 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6549 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 6490 Query: 121 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6489 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 6430 Query: 181 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6429 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 6370 Query: 241 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6369 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 6310 Query: 301 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6309 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 6250 Query: 361 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6249 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 6190 Query: 421 gtgatcgattgttgttatatgattttannnnnnngcctaagtgcatctggcgttgttggt 480 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 6189 gtgatcgattgttgttatatgattttatttttttgcctaagtgcatctggcgttgttggt 6130 Query: 481 ggtttgcctcccgt 494 |||||||||||||| Sbjct: 6129 ggtttgcctcccgt 6116 >Mhc-RG feature: mRNA loc=2L:join(16746663..16746968,16747231..16747374, 16748541..16748921,16748995..16749058,16749127..16749225, 16749427..16749530,16752534..16752941,16753767..16753937, 16754934..16755523,16757812..16757929,16758634..16758897, 16760428..16760637,16760859..16761745,16762335..16762413, 16762750..16763925,16763993..16764898, 16766105..16766850);ID=FBan0017927;gene_id=FBgn0002741;ge ne_sym=Mhc;sym=CG17927;scaffold=AE003652;len=6653 Length = 6653 Score = 938 bits (473), Expect = 0.0 Identities = 487/494 (98%) Strand = Plus / Minus Query: 1 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6609 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 6550 Query: 61 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6549 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 6490 Query: 121 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6489 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 6430 Query: 181 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6429 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 6370 Query: 241 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6369 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 6310 Query: 301 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6309 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 6250 Query: 361 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6249 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 6190 Query: 421 gtgatcgattgttgttatatgattttannnnnnngcctaagtgcatctggcgttgttggt 480 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 6189 gtgatcgattgttgttatatgattttatttttttgcctaagtgcatctggcgttgttggt 6130 Query: 481 ggtttgcctcccgt 494 |||||||||||||| Sbjct: 6129 ggtttgcctcccgt 6116 >Mhc-RF feature: mRNA loc=2L:join(16746663..16746968,16747543..16747686, 16748541..16748921,16748995..16749058,16749127..16749225, 16749427..16749530,16752534..16752941,16753767..16753937, 16754934..16755523,16756089..16756206,16758634..16758897, 16760428..16760637,16760859..16761745,16762335..16762413, 16762750..16763925,16763993..16764898, 16766105..16766850);ID=FBan0017927;gene_id=FBgn0002741;ge ne_sym=Mhc;sym=CG17927;scaffold=AE003652;len=6653 Length = 6653 Score = 938 bits (473), Expect = 0.0 Identities = 487/494 (98%) Strand = Plus / Minus Query: 1 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6609 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 6550 Query: 61 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6549 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 6490 Query: 121 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6489 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 6430 Query: 181 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6429 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 6370 Query: 241 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6369 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 6310 Query: 301 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6309 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 6250 Query: 361 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6249 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 6190 Query: 421 gtgatcgattgttgttatatgattttannnnnnngcctaagtgcatctggcgttgttggt 480 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 6189 gtgatcgattgttgttatatgattttatttttttgcctaagtgcatctggcgttgttggt 6130 Query: 481 ggtttgcctcccgt 494 |||||||||||||| Sbjct: 6129 ggtttgcctcccgt 6116 >Mhc-RE feature: mRNA loc=2L:join(16746663..16746968,16747231..16747374, 16748541..16748921,16748995..16749058,16749127..16749225, 16749427..16749530,16752534..16752941,16754347..16754517, 16754934..16755523,16757812..16757929,16758634..16758897, 16760428..16760637,16760859..16761745,16762335..16762413, 16762750..16763925,16763993..16764898, 16766105..16766850);ID=FBan0017927;gene_id=FBgn0002741;ge ne_sym=Mhc;sym=CG17927;scaffold=AE003652;len=6653 Length = 6653 Score = 938 bits (473), Expect = 0.0 Identities = 487/494 (98%) Strand = Plus / Minus Query: 1 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6609 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 6550 Query: 61 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6549 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 6490 Query: 121 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6489 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 6430 Query: 181 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6429 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 6370 Query: 241 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6369 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 6310 Query: 301 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6309 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 6250 Query: 361 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6249 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 6190 Query: 421 gtgatcgattgttgttatatgattttannnnnnngcctaagtgcatctggcgttgttggt 480 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 6189 gtgatcgattgttgttatatgattttatttttttgcctaagtgcatctggcgttgttggt 6130 Query: 481 ggtttgcctcccgt 494 |||||||||||||| Sbjct: 6129 ggtttgcctcccgt 6116 >Mhc-RD feature: mRNA loc=2L:join(16746663..16746968,16747543..16747686, 16748541..16748921,16748995..16749058,16749127..16749225, 16749427..16749530,16752534..16752941,16753767..16753937, 16754934..16755523,16757177..16757294,16758634..16758897, 16760428..16760637,16760859..16761745,16762335..16762413, 16762750..16763925,16763993..16764898, 16766105..16766850);ID=FBan0017927;gene_id=FBgn0002741;ge ne_sym=Mhc;sym=CG17927;scaffold=AE003652;len=6653 Length = 6653 Score = 938 bits (473), Expect = 0.0 Identities = 487/494 (98%) Strand = Plus / Minus Query: 1 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6609 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 6550 Query: 61 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6549 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 6490 Query: 121 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6489 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 6430 Query: 181 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6429 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 6370 Query: 241 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6369 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 6310 Query: 301 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6309 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 6250 Query: 361 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6249 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 6190 Query: 421 gtgatcgattgttgttatatgattttannnnnnngcctaagtgcatctggcgttgttggt 480 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 6189 gtgatcgattgttgttatatgattttatttttttgcctaagtgcatctggcgttgttggt 6130 Query: 481 ggtttgcctcccgt 494 |||||||||||||| Sbjct: 6129 ggtttgcctcccgt 6116 >Mhc-RC feature: mRNA loc=2L:join(16746663..16746968,16747231..16747374, 16748541..16748921,16748995..16749058,16749127..16749225, 16749427..16749530,16752534..16752941,16753767..16753937, 16754934..16755523,16757177..16757294,16758634..16758897, 16760428..16760637,16760859..16761745,16762335..16762413, 16762750..16763925,16763993..16764898, 16766105..16766850);ID=FBan0017927;gene_id=FBgn0002741;ge ne_sym=Mhc;sym=CG17927;scaffold=AE003652;len=6653 Length = 6653 Score = 938 bits (473), Expect = 0.0 Identities = 487/494 (98%) Strand = Plus / Minus Query: 1 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6609 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 6550 Query: 61 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6549 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 6490 Query: 121 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6489 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 6430 Query: 181 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6429 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 6370 Query: 241 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6369 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 6310 Query: 301 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6309 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 6250 Query: 361 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6249 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 6190 Query: 421 gtgatcgattgttgttatatgattttannnnnnngcctaagtgcatctggcgttgttggt 480 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 6189 gtgatcgattgttgttatatgattttatttttttgcctaagtgcatctggcgttgttggt 6130 Query: 481 ggtttgcctcccgt 494 |||||||||||||| Sbjct: 6129 ggtttgcctcccgt 6116 >Mhc-RB feature: mRNA loc=2L:join(16746663..16746968,16747543..16747686, 16748541..16748921,16748995..16749058,16749127..16749225, 16751361..16751464,16752534..16752941,16753767..16753937, 16754934..16755523,16756474..16756591,16758634..16758897, 16760428..16760637,16760859..16761745,16761917..16761995, 16762750..16763925,16763993..16764898, 16766105..16766850);ID=FBan0017927;gene_id=FBgn0002741;ge ne_sym=Mhc;sym=CG17927;scaffold=AE003652;len=6653 Length = 6653 Score = 938 bits (473), Expect = 0.0 Identities = 487/494 (98%) Strand = Plus / Minus Query: 1 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6609 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 6550 Query: 61 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6549 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 6490 Query: 121 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6489 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 6430 Query: 181 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6429 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 6370 Query: 241 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6369 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 6310 Query: 301 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6309 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 6250 Query: 361 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6249 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 6190 Query: 421 gtgatcgattgttgttatatgattttannnnnnngcctaagtgcatctggcgttgttggt 480 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 6189 gtgatcgattgttgttatatgattttatttttttgcctaagtgcatctggcgttgttggt 6130 Query: 481 ggtttgcctcccgt 494 |||||||||||||| Sbjct: 6129 ggtttgcctcccgt 6116 >Mhc-RA feature: mRNA loc=2L:join(16746663..16746968,16747543..16747686, 16748541..16748921,16748995..16749058,16749127..16749225, 16749427..16749530,16752534..16752941,16753767..16753937, 16754934..16755523,16757812..16757929,16758634..16758897, 16760428..16760637,16760859..16761745,16762335..16762413, 16762750..16763925,16763993..16764898, 16766105..16766850);ID=FBan0017927;gene_id=FBgn0002741;ge ne_sym=Mhc;sym=CG17927;scaffold=AE003652;len=6653 Length = 6653 Score = 938 bits (473), Expect = 0.0 Identities = 487/494 (98%) Strand = Plus / Minus Query: 1 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6609 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 6550 Query: 61 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6549 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 6490 Query: 121 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6489 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 6430 Query: 181 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6429 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 6370 Query: 241 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6369 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 6310 Query: 301 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6309 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 6250 Query: 361 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6249 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 6190 Query: 421 gtgatcgattgttgttatatgattttannnnnnngcctaagtgcatctggcgttgttggt 480 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 6189 gtgatcgattgttgttatatgattttatttttttgcctaagtgcatctggcgttgttggt 6130 Query: 481 ggtttgcctcccgt 494 |||||||||||||| Sbjct: 6129 ggtttgcctcccgt 6116 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,993 Number of Sequences: 18737 Number of extensions: 13993 Number of successful extensions: 504 Number of sequences better than 1.0e-100: 13 Number of HSP's better than 0.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 462 Number of HSP's gapped (non-prelim): 29 length of query: 777 length of database: 41,270,998 effective HSP length: 17 effective length of query: 760 effective length of database: 40,952,469 effective search space: 31123876440 effective search space used: 31123876440 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA567992|AA567992 HL02093..5prime HL Drosophila Head Drosophila melanogaster cDNA clone HL02093 5', mRNA sequence. (814 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,973 Number of Sequences: 18737 Number of extensions: 13973 Number of successful extensions: 234 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 234 Number of HSP's gapped (non-prelim): 0 length of query: 814 length of database: 41,270,998 effective HSP length: 17 effective length of query: 797 effective length of database: 40,952,469 effective search space: 32639117793 effective search space used: 32639117793 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA694807|AA694807 GM01575.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM01575 5prime similar to M20571: gro FBgn0001139 PID:g157365 SWISS-PROT:P16371, mRNA sequence. (585 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value gro-RE feature: mRNA loc=3R:join(21856797..21856988,21858082..21... 983 0.0 gro-RD feature: mRNA loc=3R:join(21857217..21857271,21858082..21... 555 e-157 gro-RC feature: mRNA loc=3R:join(21857907..21857990,21858082..21... 555 e-157 gro-RB feature: mRNA loc=3R:join(21856797..21856988,21858082..21... 555 e-157 gro-RA feature: mRNA loc=3R:join(21857217..21857351,21858082..21... 555 e-157 >gro-RE feature: mRNA loc=3R:join(21856797..21856988,21858082..21858466, 21858602..21858696,21859397..21859460,21859531..21859713, 21860091..21860123,21860556..21860750,21860816..21860914, 21861623..21861679,21861820..21861996,21862061..21862332, 21862583..21863256,21863323..21863522, 21863585..21864999);ID=FBan0008384;gene_id=FBgn0001139;ge ne_sym=gro;sym=CG8384;scaffold=AE003754;len=4041 Length = 4041 Score = 983 bits (496), Expect = 0.0 Identities = 567/587 (96%), Gaps = 3/587 (0%) Strand = Plus / Plus Query: 1 gagatgcagcccaattaggtaatgtactacgagatgtcctatggccttaacgtggagatg 60 |||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||| Sbjct: 713 gagatgcagcgccattatgttatgtactacgagatgtcctatggccttaacgtggagatg 772 Query: 61 cacaagcagaccgagatcgccaagcggctgaacacactgatcaaccagctacttccattc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 773 cacaagcagaccgagatcgccaagcggctgaacacactgatcaaccagctacttccattc 832 Query: 121 cttcaggccgaccaccagcagcaagtgctgcaggcggtggagcgggcgaacgaggtgacc 180 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 833 cttcaggccgaccaccagcagcaagtgctgcaggcggtggagcgggcgaagcaggtgacc 892 Query: 181 atgcaggagctcaacctgatcattgggcatcagcagcaacatggaattcagcaactttta 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 893 atgcaggagctcaacctgatcattgggcatcagcagcaacatggaattcagcaactttta 952 Query: 241 caacagatccacgcccagcaagtgccaggtggaccacctcagccgatgggcgcactgaat 300 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 953 caacagatccacgcccagcaggtgccaggtggaccacctcagccgatgggcgcactgaat 1012 Query: 301 ccgtttggcgccct-ggcaccccantgtggcctgccacacggaccgcaagctgt-ctgaa 358 |||||||||||||| ||| || | || |||||||||||||||||||||| | | ||||| Sbjct: 1013 ccgtttggcgccctgggcgccaccatg-ggcctgccacacggaccgcaaggtctgctgaa 1071 Query: 359 caaaccgcccgaacaccacaggccggacatcaagccgacgggtctagaggggccagcagc 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1072 caaaccgcccgaacaccacaggccggacatcaagccgacgggtctagaggggccagcagc 1131 Query: 419 cgccgaggagcgattgcgccattcggtttcgccggccgatcgtgagaagtatcgcacacg 478 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 1132 cgccgaggagcgattgcgcaattcggtttcgccggccgatcgtgagaagtatcgcacacg 1191 Query: 479 ctcgcagctggacatcgagaacgactcgaagcgtcgacaagatgagaaactgcaagagga 538 ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1192 ctcgccgctggacatcgagaacgactcgaagcgtcgaaaagatgagaaactgcaagagga 1251 Query: 539 tgaaggcgacaaaagcgatcaagatttagtcgtagatgttgcaaatg 585 ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1252 tgaaggcgagaaaagcgatcaagatttagtcgtagatgttgcaaatg 1298 >gro-RD feature: mRNA loc=3R:join(21857217..21857271,21858082..21858466, 21858602..21858696,21859397..21859460,21859531..21859713, 21860556..21860750,21860816..21860914,21861623..21861679, 21861820..21861996,21862061..21862332,21862583..21863256, 21863323..21863522, 21863585..21864999);ID=FBan0008384;gene_id=FBgn0001139;ge ne_sym=gro;sym=CG8384;scaffold=AE003754;len=3871 Length = 3871 Score = 555 bits (280), Expect = e-157 Identities = 333/347 (95%), Gaps = 3/347 (0%) Strand = Plus / Plus Query: 241 caacagatccacgcccagcaagtgccaggtggaccacctcagccgatgggcgcactgaat 300 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 783 caacagatccacgcccagcaggtgccaggtggaccacctcagccgatgggcgcactgaat 842 Query: 301 ccgtttggcgccctgg-caccccantgtggcctgccacacggaccgcaagctgt-ctgaa 358 |||||||||||||||| | || | || |||||||||||||||||||||| | | ||||| Sbjct: 843 ccgtttggcgccctgggcgccaccatg-ggcctgccacacggaccgcaaggtctgctgaa 901 Query: 359 caaaccgcccgaacaccacaggccggacatcaagccgacgggtctagaggggccagcagc 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 902 caaaccgcccgaacaccacaggccggacatcaagccgacgggtctagaggggccagcagc 961 Query: 419 cgccgaggagcgattgcgccattcggtttcgccggccgatcgtgagaagtatcgcacacg 478 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 962 cgccgaggagcgattgcgcaattcggtttcgccggccgatcgtgagaagtatcgcacacg 1021 Query: 479 ctcgcagctggacatcgagaacgactcgaagcgtcgacaagatgagaaactgcaagagga 538 ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1022 ctcgccgctggacatcgagaacgactcgaagcgtcgaaaagatgagaaactgcaagagga 1081 Query: 539 tgaaggcgacaaaagcgatcaagatttagtcgtagatgttgcaaatg 585 ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1082 tgaaggcgagaaaagcgatcaagatttagtcgtagatgttgcaaatg 1128 Score = 367 bits (185), Expect = e-101 Identities = 203/209 (97%) Strand = Plus / Plus Query: 1 gagatgcagcccaattaggtaatgtactacgagatgtcctatggccttaacgtggagatg 60 |||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||| Sbjct: 576 gagatgcagcgccattatgttatgtactacgagatgtcctatggccttaacgtggagatg 635 Query: 61 cacaagcagaccgagatcgccaagcggctgaacacactgatcaaccagctacttccattc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 636 cacaagcagaccgagatcgccaagcggctgaacacactgatcaaccagctacttccattc 695 Query: 121 cttcaggccgaccaccagcagcaagtgctgcaggcggtggagcgggcgaacgaggtgacc 180 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 696 cttcaggccgaccaccagcagcaagtgctgcaggcggtggagcgggcgaagcaggtgacc 755 Query: 181 atgcaggagctcaacctgatcattgggca 209 ||||||||||||||||||||||||||||| Sbjct: 756 atgcaggagctcaacctgatcattgggca 784 >gro-RC feature: mRNA loc=3R:join(21857907..21857990,21858082..21858466, 21858602..21858696,21859397..21859460,21859531..21859713, 21860556..21860750,21860816..21860914,21861623..21861679, 21861820..21861996,21862061..21862332,21862583..21863256, 21863323..21863522, 21863585..21864999);ID=FBan0008384;gene_id=FBgn0001139;ge ne_sym=gro;sym=CG8384;scaffold=AE003754;len=3900 Length = 3900 Score = 555 bits (280), Expect = e-157 Identities = 333/347 (95%), Gaps = 3/347 (0%) Strand = Plus / Plus Query: 241 caacagatccacgcccagcaagtgccaggtggaccacctcagccgatgggcgcactgaat 300 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 812 caacagatccacgcccagcaggtgccaggtggaccacctcagccgatgggcgcactgaat 871 Query: 301 ccgtttggcgccctgg-caccccantgtggcctgccacacggaccgcaagctgt-ctgaa 358 |||||||||||||||| | || | || |||||||||||||||||||||| | | ||||| Sbjct: 872 ccgtttggcgccctgggcgccaccatg-ggcctgccacacggaccgcaaggtctgctgaa 930 Query: 359 caaaccgcccgaacaccacaggccggacatcaagccgacgggtctagaggggccagcagc 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 931 caaaccgcccgaacaccacaggccggacatcaagccgacgggtctagaggggccagcagc 990 Query: 419 cgccgaggagcgattgcgccattcggtttcgccggccgatcgtgagaagtatcgcacacg 478 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 991 cgccgaggagcgattgcgcaattcggtttcgccggccgatcgtgagaagtatcgcacacg 1050 Query: 479 ctcgcagctggacatcgagaacgactcgaagcgtcgacaagatgagaaactgcaagagga 538 ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1051 ctcgccgctggacatcgagaacgactcgaagcgtcgaaaagatgagaaactgcaagagga 1110 Query: 539 tgaaggcgacaaaagcgatcaagatttagtcgtagatgttgcaaatg 585 ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1111 tgaaggcgagaaaagcgatcaagatttagtcgtagatgttgcaaatg 1157 Score = 367 bits (185), Expect = e-101 Identities = 203/209 (97%) Strand = Plus / Plus Query: 1 gagatgcagcccaattaggtaatgtactacgagatgtcctatggccttaacgtggagatg 60 |||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||| Sbjct: 605 gagatgcagcgccattatgttatgtactacgagatgtcctatggccttaacgtggagatg 664 Query: 61 cacaagcagaccgagatcgccaagcggctgaacacactgatcaaccagctacttccattc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 665 cacaagcagaccgagatcgccaagcggctgaacacactgatcaaccagctacttccattc 724 Query: 121 cttcaggccgaccaccagcagcaagtgctgcaggcggtggagcgggcgaacgaggtgacc 180 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 725 cttcaggccgaccaccagcagcaagtgctgcaggcggtggagcgggcgaagcaggtgacc 784 Query: 181 atgcaggagctcaacctgatcattgggca 209 ||||||||||||||||||||||||||||| Sbjct: 785 atgcaggagctcaacctgatcattgggca 813 >gro-RB feature: mRNA loc=3R:join(21856797..21856988,21858082..21858466, 21858602..21858696,21859397..21859460,21859531..21859713, 21860556..21860750,21860816..21860914,21861623..21861679, 21861820..21861996,21862061..21862332,21862583..21863256, 21863323..21863522, 21863585..21864999);ID=FBan0008384;gene_id=FBgn0001139;ge ne_sym=gro;sym=CG8384;scaffold=AE003754;len=4008 Length = 4008 Score = 555 bits (280), Expect = e-157 Identities = 333/347 (95%), Gaps = 3/347 (0%) Strand = Plus / Plus Query: 241 caacagatccacgcccagcaagtgccaggtggaccacctcagccgatgggcgcactgaat 300 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 920 caacagatccacgcccagcaggtgccaggtggaccacctcagccgatgggcgcactgaat 979 Query: 301 ccgtttggcgccctgg-caccccantgtggcctgccacacggaccgcaagctgt-ctgaa 358 |||||||||||||||| | || | || |||||||||||||||||||||| | | ||||| Sbjct: 980 ccgtttggcgccctgggcgccaccatg-ggcctgccacacggaccgcaaggtctgctgaa 1038 Query: 359 caaaccgcccgaacaccacaggccggacatcaagccgacgggtctagaggggccagcagc 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1039 caaaccgcccgaacaccacaggccggacatcaagccgacgggtctagaggggccagcagc 1098 Query: 419 cgccgaggagcgattgcgccattcggtttcgccggccgatcgtgagaagtatcgcacacg 478 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 1099 cgccgaggagcgattgcgcaattcggtttcgccggccgatcgtgagaagtatcgcacacg 1158 Query: 479 ctcgcagctggacatcgagaacgactcgaagcgtcgacaagatgagaaactgcaagagga 538 ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1159 ctcgccgctggacatcgagaacgactcgaagcgtcgaaaagatgagaaactgcaagagga 1218 Query: 539 tgaaggcgacaaaagcgatcaagatttagtcgtagatgttgcaaatg 585 ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1219 tgaaggcgagaaaagcgatcaagatttagtcgtagatgttgcaaatg 1265 Score = 367 bits (185), Expect = e-101 Identities = 203/209 (97%) Strand = Plus / Plus Query: 1 gagatgcagcccaattaggtaatgtactacgagatgtcctatggccttaacgtggagatg 60 |||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||| Sbjct: 713 gagatgcagcgccattatgttatgtactacgagatgtcctatggccttaacgtggagatg 772 Query: 61 cacaagcagaccgagatcgccaagcggctgaacacactgatcaaccagctacttccattc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 773 cacaagcagaccgagatcgccaagcggctgaacacactgatcaaccagctacttccattc 832 Query: 121 cttcaggccgaccaccagcagcaagtgctgcaggcggtggagcgggcgaacgaggtgacc 180 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 833 cttcaggccgaccaccagcagcaagtgctgcaggcggtggagcgggcgaagcaggtgacc 892 Query: 181 atgcaggagctcaacctgatcattgggca 209 ||||||||||||||||||||||||||||| Sbjct: 893 atgcaggagctcaacctgatcattgggca 921 >gro-RA feature: mRNA loc=3R:join(21857217..21857351,21858082..21858466, 21858602..21858696,21859397..21859460,21859531..21859713, 21860556..21860750,21860816..21860914,21861623..21861679, 21861820..21861996,21862061..21862332,21862583..21863256, 21863323..21863522, 21863585..21864999);ID=FBan0008384;gene_id=FBgn0001139;ge ne_sym=gro;sym=CG8384;scaffold=AE003754;len=3951 Length = 3951 Score = 555 bits (280), Expect = e-157 Identities = 333/347 (95%), Gaps = 3/347 (0%) Strand = Plus / Plus Query: 241 caacagatccacgcccagcaagtgccaggtggaccacctcagccgatgggcgcactgaat 300 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 863 caacagatccacgcccagcaggtgccaggtggaccacctcagccgatgggcgcactgaat 922 Query: 301 ccgtttggcgccctgg-caccccantgtggcctgccacacggaccgcaagctgt-ctgaa 358 |||||||||||||||| | || | || |||||||||||||||||||||| | | ||||| Sbjct: 923 ccgtttggcgccctgggcgccaccatg-ggcctgccacacggaccgcaaggtctgctgaa 981 Query: 359 caaaccgcccgaacaccacaggccggacatcaagccgacgggtctagaggggccagcagc 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 982 caaaccgcccgaacaccacaggccggacatcaagccgacgggtctagaggggccagcagc 1041 Query: 419 cgccgaggagcgattgcgccattcggtttcgccggccgatcgtgagaagtatcgcacacg 478 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 1042 cgccgaggagcgattgcgcaattcggtttcgccggccgatcgtgagaagtatcgcacacg 1101 Query: 479 ctcgcagctggacatcgagaacgactcgaagcgtcgacaagatgagaaactgcaagagga 538 ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1102 ctcgccgctggacatcgagaacgactcgaagcgtcgaaaagatgagaaactgcaagagga 1161 Query: 539 tgaaggcgacaaaagcgatcaagatttagtcgtagatgttgcaaatg 585 ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1162 tgaaggcgagaaaagcgatcaagatttagtcgtagatgttgcaaatg 1208 Score = 367 bits (185), Expect = e-101 Identities = 203/209 (97%) Strand = Plus / Plus Query: 1 gagatgcagcccaattaggtaatgtactacgagatgtcctatggccttaacgtggagatg 60 |||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||| Sbjct: 656 gagatgcagcgccattatgttatgtactacgagatgtcctatggccttaacgtggagatg 715 Query: 61 cacaagcagaccgagatcgccaagcggctgaacacactgatcaaccagctacttccattc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 716 cacaagcagaccgagatcgccaagcggctgaacacactgatcaaccagctacttccattc 775 Query: 121 cttcaggccgaccaccagcagcaagtgctgcaggcggtggagcgggcgaacgaggtgacc 180 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 776 cttcaggccgaccaccagcagcaagtgctgcaggcggtggagcgggcgaagcaggtgacc 835 Query: 181 atgcaggagctcaacctgatcattgggca 209 ||||||||||||||||||||||||||||| Sbjct: 836 atgcaggagctcaacctgatcattgggca 864 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 23,299 Number of Sequences: 18737 Number of extensions: 23299 Number of successful extensions: 737 Number of sequences better than 1.0e-100: 5 Number of HSP's better than 0.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 718 Number of HSP's gapped (non-prelim): 14 length of query: 585 length of database: 41,270,998 effective HSP length: 17 effective length of query: 568 effective length of database: 40,952,469 effective search space: 23261002392 effective search space used: 23261002392 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA694947|AA694947 GM01832.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM01832 5, mRNA sequence. (650 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG3861-RB feature: mRNA loc=X:join(6091005..6091330,6099278..610... 511 e-144 CG3861-RA feature: mRNA loc=X:join(6092657..6092857,6099278..610... 511 e-144 >CG3861-RB feature: mRNA loc=X:join(6091005..6091330,6099278..6100255, 6100368..6101569);ID=FBan0003861;gene_id=FBgn0029869;gene _sym=CG3861;sym=CG3861;scaffold=AE003437;len=2506 Length = 2506 Score = 511 bits (258), Expect = e-144 Identities = 278/288 (96%) Strand = Plus / Plus Query: 299 gggacaggcagagagagtaaaatgtttgcgcctattgtttatgttcagcatttcccccac 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2146 gggacaggcagagagagtaaaatgtttgcgcctattgtttatgttcagcatttcccccac 2205 Query: 359 ccgaaaccgcccacgatacccactctttattaagtttgttatgtttatattttgttcatc 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2206 ccgaaaccgcccacgatacccactctttattaagtttgttatgtttatattttgttcatc 2265 Query: 419 ttagccgatcgatggactaaccacgacacgaccttaatgatttatcccccaaaaagcccg 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2266 ttagccgatcgatggactaaccacgacacgaccttaatgatttatcccccaaaaagcccg 2325 Query: 479 cccgacccaccagcacccaccccgcctgaaaaacctnnnnnnnnnttactaacttgataa 538 |||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 2326 cccgacccaccagcacccaccccgcctgaaaaacctaaaaaaaaattactaacttgataa 2385 Query: 539 cattttacttttaatttaactataatttattatgcanacaagatacaa 586 |||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 2386 cattttacttttaatttaactataatttattatgcaaacaagatacaa 2433 Score = 460 bits (232), Expect = e-129 Identities = 232/232 (100%) Strand = Plus / Plus Query: 1 attggatggatatcgatatgacgacgctgatattgagggagttggagatgtgtagttgag 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1850 attggatggatatcgatatgacgacgctgatattgagggagttggagatgtgtagttgag 1909 Query: 61 gagaagagcaaccaaatacgaaccaataggacaaaaacgaaaaccagaagaaaactgcaa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1910 gagaagagcaaccaaatacgaaccaataggacaaaaacgaaaaccagaagaaaactgcaa 1969 Query: 121 cacactgcaactgcaaaacaataagttggaaataaggcagaaacatatttttagtagtaa 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1970 cacactgcaactgcaaaacaataagttggaaataaggcagaaacatatttttagtagtaa 2029 Query: 181 aataattaacgaagggcaaccgacaagcaaccacttaattatttgtataagc 232 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2030 aataattaacgaagggcaaccgacaagcaaccacttaattatttgtataagc 2081 >CG3861-RA feature: mRNA loc=X:join(6092657..6092857,6099278..6100255, 6100368..6101569);ID=FBan0003861;gene_id=FBgn0029869;gene _sym=CG3861;sym=CG3861;scaffold=AE003437;len=2381 Length = 2381 Score = 511 bits (258), Expect = e-144 Identities = 278/288 (96%) Strand = Plus / Plus Query: 299 gggacaggcagagagagtaaaatgtttgcgcctattgtttatgttcagcatttcccccac 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2021 gggacaggcagagagagtaaaatgtttgcgcctattgtttatgttcagcatttcccccac 2080 Query: 359 ccgaaaccgcccacgatacccactctttattaagtttgttatgtttatattttgttcatc 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2081 ccgaaaccgcccacgatacccactctttattaagtttgttatgtttatattttgttcatc 2140 Query: 419 ttagccgatcgatggactaaccacgacacgaccttaatgatttatcccccaaaaagcccg 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2141 ttagccgatcgatggactaaccacgacacgaccttaatgatttatcccccaaaaagcccg 2200 Query: 479 cccgacccaccagcacccaccccgcctgaaaaacctnnnnnnnnnttactaacttgataa 538 |||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 2201 cccgacccaccagcacccaccccgcctgaaaaacctaaaaaaaaattactaacttgataa 2260 Query: 539 cattttacttttaatttaactataatttattatgcanacaagatacaa 586 |||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 2261 cattttacttttaatttaactataatttattatgcaaacaagatacaa 2308 Score = 460 bits (232), Expect = e-129 Identities = 232/232 (100%) Strand = Plus / Plus Query: 1 attggatggatatcgatatgacgacgctgatattgagggagttggagatgtgtagttgag 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1725 attggatggatatcgatatgacgacgctgatattgagggagttggagatgtgtagttgag 1784 Query: 61 gagaagagcaaccaaatacgaaccaataggacaaaaacgaaaaccagaagaaaactgcaa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1785 gagaagagcaaccaaatacgaaccaataggacaaaaacgaaaaccagaagaaaactgcaa 1844 Query: 121 cacactgcaactgcaaaacaataagttggaaataaggcagaaacatatttttagtagtaa 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1845 cacactgcaactgcaaaacaataagttggaaataaggcagaaacatatttttagtagtaa 1904 Query: 181 aataattaacgaagggcaaccgacaagcaaccacttaattatttgtataagc 232 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1905 aataattaacgaagggcaaccgacaagcaaccacttaattatttgtataagc 1956 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,057 Number of Sequences: 18737 Number of extensions: 12057 Number of successful extensions: 253 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 247 Number of HSP's gapped (non-prelim): 6 length of query: 650 length of database: 41,270,998 effective HSP length: 17 effective length of query: 633 effective length of database: 40,952,469 effective search space: 25922912877 effective search space used: 25922912877 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA695190|AA695190 GM02380.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM02380 5prime, mRNA sequence. (342 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4865 Number of Sequences: 18737 Number of extensions: 4865 Number of successful extensions: 428 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 428 Number of HSP's gapped (non-prelim): 0 length of query: 342 length of database: 41,270,998 effective HSP length: 16 effective length of query: 326 effective length of database: 40,971,206 effective search space: 13356613156 effective search space used: 13356613156 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA695384|AA695384 GM02731.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM02731 5prime, mRNA sequence. (630 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG18811-RA feature: mRNA loc=3L:complement(18617198..18620067,18... 1168 0.0 >CG18811-RA feature: mRNA loc=3L:complement(18617198..18620067,18620147..18620313, 18620369..18620551, 18621510..18622068);ID=FBan0018811;gene_id=FBgn0042134;ge ne_sym=CG18811;sym=CG18811;scaffold=AE003519;len=3779 Length = 3779 Score = 1168 bits (589), Expect = 0.0 Identities = 615/621 (99%), Gaps = 2/621 (0%) Strand = Plus / Minus Query: 11 ttgatttgtgtgtcggcttcattttcggattcccaagttgcgttataaaggattcttttt 70 ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| Sbjct: 3299 ttgatttgtgtgtcggcttcattttcg-attccctagttgcgttataaaggattcttttt 3241 Query: 71 gatagatttccatttcttatggttgagagtggtttgcgtaacaataattgtacgtctacg 130 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3240 gatagatttccatttcttatggttgagagtggtttgcgtaacaataattgtacgtctacg 3181 Query: 131 tggccattacttgcatgttgatgattggtttccttgttttctgtatggaggttgtgttta 190 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3180 tggccattacttgcatgttgatgattggtttccttgttttctgtatggaggttgtgttta 3121 Query: 191 tggtttgcatgaattgtatgtgtgttttgtttgcggggttaatacgtattgtatgctcag 250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3120 tggtttgcatgaattgtatgtgtgttttgtttgcggggttaatacgtattgtatgctcag 3061 Query: 251 tttttgttctccagcccgagtggcatgcgttgcgactggttctgacggtttatgtagcca 310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3060 tttttgttctccagcccgagtggcatgcgttgcgactggttctgacggtttatgtagcca 3001 Query: 311 ccaccaccacctccctggttgcccgctccgccacgaccacgatcgcccatgggcctgccg 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3000 ccaccaccacctccctggttgcccgctccgccacgaccacgatcgcccatgggcctgccg 2941 Query: 371 ccgccatacgagccattcacattacgctgctggttgccaccgcgctggcctcgatagctt 430 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2940 ccgccatacgagccatttacattacgctgctggttgccaccgcgctggcctcgatagctt 2881 Query: 431 ccaccgccgccgccggaggattcgtagcgcgactccttgttgtaggtgccaccgccacct 490 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2880 ccaccgccgccgccggaggattcgtagcgcgactccttgttgtaggtgccaccgccacct 2821 Query: 491 cctccgttctggtagtagttgttgcct-caccattgctcgactcattgttgcggaagtac 549 ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| Sbjct: 2820 cctccgttctggtagtagttgttgcctccaccattgcccgactcattgttgcggaagtac 2761 Query: 550 acaccgctcgaattgcccgaattgcgtccgttcgtgttagatgagttgccgtattgacgc 609 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2760 acaccgctcgaattgcccgaattgcgtccgttcgtgttagatgagttgccgtattgacgc 2701 Query: 610 gacgggtagttgcccctgtcg 630 ||| ||||||||||||||||| Sbjct: 2700 gaccggtagttgcccctgtcg 2680 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 21,954 Number of Sequences: 18737 Number of extensions: 21954 Number of successful extensions: 1335 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1332 Number of HSP's gapped (non-prelim): 1 length of query: 630 length of database: 41,270,998 effective HSP length: 17 effective length of query: 613 effective length of database: 40,952,469 effective search space: 25103863497 effective search space used: 25103863497 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA695906|AA695906 GM04752.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM04752 5prime similar to M21017: D.melanogaster 18S, 5.8S 2S and 28S rRNA genes, complete, and 18S rRNA gene, 5' end, clone pDm238, mRNA sequence. (717 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,539 Number of Sequences: 18737 Number of extensions: 12539 Number of successful extensions: 196 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 196 Number of HSP's gapped (non-prelim): 0 length of query: 717 length of database: 41,270,998 effective HSP length: 17 effective length of query: 700 effective length of database: 40,952,469 effective search space: 28666728300 effective search space used: 28666728300 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA696493|AA696493 GM07780.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM07780 5prime, mRNA sequence. (479 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value robo-RA feature: mRNA loc=2R:complement(17736074..17738862,17738... 918 0.0 robo-RB feature: mRNA loc=2R:complement(17736074..17738862,17738... 779 0.0 >robo-RA feature: mRNA loc=2R:complement(17736074..17738862,17738938..17739269, 17739327..17739559,17739622..17739913, 17739969..17740243,17740302..17740500, 17740565..17740657,17740716..17740886, 17740952..17741033,17741095..17741255, 17741322..17741404,17741462..17741941, 17742002..17742455,17742516..17742634, 17742746..17742926,17743163..17743284, 17743352..17743584, 17744428..17744512);ID=FBan0013521;gene_id=FBgn0005631;g ene_sym=robo;sym=CG13521;scaffold=AE003458;len=6384 Length = 6384 Score = 918 bits (463), Expect = 0.0 Identities = 476/479 (99%), Gaps = 1/479 (0%) Strand = Plus / Plus Query: 1 acccacgtccaattgtgaattttcggctgcgcggtgaatcgcactaaagagcaggaaaat 60 |||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||| Sbjct: 1 acccacgtccaattgtgagttttcg-ctgcgccgtgaatcgcactaaagagcaggaaaat 59 Query: 61 agttaatttccaacagttaaattggagacccaaaaacaacgccaaaatgatcgccgctgc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 60 agttaatttccaacagttaaattggagacccaaaaacaacgccaaaatgatcgccgctgc 119 Query: 121 attgggtcatctgtagagtcgtcattgcaacagcaccaacaccataaaatgcatcccatg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 120 attgggtcatctgtagagtcgtcattgcaacagcaccaacaccataaaatgcatcccatg 179 Query: 181 catcccgaaaaccacgccatcgcccggagcacgagcaccactaataacccatctcgcagt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 180 catcccgaaaaccacgccatcgcccggagcacgagcaccactaataacccatctcgcagt 239 Query: 241 cggagcagcaggatgtggctcctgcccgcctggctgctcctcgtcctggtggccagcaat 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 240 cggagcagcaggatgtggctcctgcccgcctggctgctcctcgtcctggtggccagcaat 299 Query: 301 ggcctgccagcagtcagaggccagtaccaatcgccacgtatcatcgagcatcccacggat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 300 ggcctgccagcagtcagaggccagtaccaatcgccacgtatcatcgagcatcccacggat 359 Query: 361 ctggtcgttaagaagaatgaacccgccacgctcaactgcaaagtggagggcaagccggaa 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 360 ctggtcgttaagaagaatgaacccgccacgctcaactgcaaagtggagggcaagccggaa 419 Query: 421 cccaccattgagtggtttaaggatggcgaacccgtcagcaccaacgaaaagaaatcgca 479 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 420 cccaccattgagtggtttaaggatggcgaacccgtcagcaccaacgaaaagaaatcgca 478 >robo-RB feature: mRNA loc=2R:complement(17736074..17738862,17738938..17739269, 17739327..17739559,17739622..17739913, 17739969..17740243,17740302..17740500, 17740565..17740657,17740716..17740886, 17740952..17741033,17741095..17741255, 17741322..17741404,17741462..17741941, 17742002..17742455,17742516..17742634, 17742746..17742926,17743163..17743284, 17743352..17743584, 17743641..17743898);ID=FBan0013521;gene_id=FBgn0005631;g ene_sym=robo;sym=CG13521;scaffold=AE003458;len=6557 Length = 6557 Score = 779 bits (393), Expect = 0.0 Identities = 393/393 (100%) Strand = Plus / Plus Query: 87 gacccaaaaacaacgccaaaatgatcgccgctgcattgggtcatctgtagagtcgtcatt 146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 259 gacccaaaaacaacgccaaaatgatcgccgctgcattgggtcatctgtagagtcgtcatt 318 Query: 147 gcaacagcaccaacaccataaaatgcatcccatgcatcccgaaaaccacgccatcgcccg 206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 319 gcaacagcaccaacaccataaaatgcatcccatgcatcccgaaaaccacgccatcgcccg 378 Query: 207 gagcacgagcaccactaataacccatctcgcagtcggagcagcaggatgtggctcctgcc 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 379 gagcacgagcaccactaataacccatctcgcagtcggagcagcaggatgtggctcctgcc 438 Query: 267 cgcctggctgctcctcgtcctggtggccagcaatggcctgccagcagtcagaggccagta 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 439 cgcctggctgctcctcgtcctggtggccagcaatggcctgccagcagtcagaggccagta 498 Query: 327 ccaatcgccacgtatcatcgagcatcccacggatctggtcgttaagaagaatgaacccgc 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 499 ccaatcgccacgtatcatcgagcatcccacggatctggtcgttaagaagaatgaacccgc 558 Query: 387 cacgctcaactgcaaagtggagggcaagccggaacccaccattgagtggtttaaggatgg 446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 559 cacgctcaactgcaaagtggagggcaagccggaacccaccattgagtggtttaaggatgg 618 Query: 447 cgaacccgtcagcaccaacgaaaagaaatcgca 479 ||||||||||||||||||||||||||||||||| Sbjct: 619 cgaacccgtcagcaccaacgaaaagaaatcgca 651 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,278 Number of Sequences: 18737 Number of extensions: 15278 Number of successful extensions: 446 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 443 Number of HSP's gapped (non-prelim): 2 length of query: 479 length of database: 41,270,998 effective HSP length: 17 effective length of query: 462 effective length of database: 40,952,469 effective search space: 18920040678 effective search space used: 18920040678 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA696584|AA696584 GM07940.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM07940 5, mRNA sequence. (612 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG9924-RB feature: mRNA loc=3R:complement(9793693..9795071,97951... 759 0.0 >CG9924-RB feature: mRNA loc=3R:complement(9793693..9795071,9795138..9795280, 9795349..9795527,9795650..9795945,9796019..9796180, 9796249..9796370,9796693..9796843,9852619..9852685, 9857314..9857796);ID=FBan0009924;gene_id=FBgn0038192;gen e_sym=CG9924;sym=CG9924;scaffold=AE003702;len=2982 Length = 2982 Score = 759 bits (383), Expect = 0.0 Identities = 383/383 (100%) Strand = Plus / Plus Query: 230 gcgcagttcacacaacttggcctggaaaaagtgaaagagtattttttcggccatattgtg 289 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 262 gcgcagttcacacaacttggcctggaaaaagtgaaagagtattttttcggccatattgtg 321 Query: 290 ttgtcatagctggaaaaagtgcatttcccggccatatggagattcagatcatatgcgaat 349 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 322 ttgtcatagctggaaaaagtgcatttcccggccatatggagattcagatcatatgcgaat 381 Query: 350 aaatattcgctgagccaaagtttactcagaatccccccaatttcgagtaaatagggcgac 409 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 382 aaatattcgctgagccaaagtttactcagaatccccccaatttcgagtaaatagggcgac 441 Query: 410 ttatgtaaagcggagaacgagaaactatttacatttacaaagaaatcttgactcgcttgg 469 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 442 ttatgtaaagcggagaacgagaaactatttacatttacaaagaaatcttgactcgcttgg 501 Query: 470 ctttggcttgtaaattacaggaaggaacagcagtaataacttaaacaagattgccggtga 529 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 502 ctttggcttgtaaattacaggaaggaacagcagtaataacttaaacaagattgccggtga 561 Query: 530 acgaatgtcaggcaagccaaacagctagagtcacctcgaacctgcacgcatccagtagca 589 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 562 acgaatgtcaggcaagccaaacagctagagtcacctcgaacctgcacgcatccagtagca 621 Query: 590 cgatggcggtcagccgtgtacca 612 ||||||||||||||||||||||| Sbjct: 622 cgatggcggtcagccgtgtacca 644 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,366 Number of Sequences: 18737 Number of extensions: 10366 Number of successful extensions: 186 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 184 Number of HSP's gapped (non-prelim): 2 length of query: 612 length of database: 41,270,998 effective HSP length: 17 effective length of query: 595 effective length of database: 40,952,469 effective search space: 24366719055 effective search space used: 24366719055 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA697356|AA697356 HL02313.5prime HL Drosophila melanogaster head BlueScript Drosophila melanogaster cDNA clone HL02313 5prime, mRNA sequence. (781 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,497 Number of Sequences: 18737 Number of extensions: 14497 Number of successful extensions: 214 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 214 Number of HSP's gapped (non-prelim): 0 length of query: 781 length of database: 41,270,998 effective HSP length: 17 effective length of query: 764 effective length of database: 40,952,469 effective search space: 31287686316 effective search space used: 31287686316 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA697659|AA697659 HL02945.5prime HL Drosophila melanogaster head BlueScript Drosophila melanogaster cDNA clone HL02945 5prime, mRNA sequence. (660 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,710 Number of Sequences: 18737 Number of extensions: 13710 Number of successful extensions: 278 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 278 Number of HSP's gapped (non-prelim): 0 length of query: 660 length of database: 41,270,998 effective HSP length: 17 effective length of query: 643 effective length of database: 40,952,469 effective search space: 26332437567 effective search space used: 26332437567 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA697681|AA697681 HL02977.5prime HL Drosophila melanogaster head BlueScript Drosophila melanogaster cDNA clone HL02977 5prime similar to K01581: d.melanogaster 28s rrna gene, clone pdm238, mRNA sequence. (599 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9309 Number of Sequences: 18737 Number of extensions: 9309 Number of successful extensions: 185 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 185 Number of HSP's gapped (non-prelim): 0 length of query: 599 length of database: 41,270,998 effective HSP length: 17 effective length of query: 582 effective length of database: 40,952,469 effective search space: 23834336958 effective search space used: 23834336958 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA697897|AA697897 HL03427.5prime HL Drosophila melanogaster head BlueScript Drosophila melanogaster cDNA clone HL03427 5prime similar to M21017: D.melanogaster 18S, 5.8S 2S and 28S rRNA genes, complete, and 18S rRNA gene, 5' end, clone pDm238, mRNA sequence. (718 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,876 Number of Sequences: 18737 Number of extensions: 12876 Number of successful extensions: 218 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 218 Number of HSP's gapped (non-prelim): 0 length of query: 718 length of database: 41,270,998 effective HSP length: 17 effective length of query: 701 effective length of database: 40,952,469 effective search space: 28707680769 effective search space used: 28707680769 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA699178|AA699178 HL07869.5prime HL Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone HL07869 5 similar to CG1583: FBan0001583 'phospholipase A2' located on: X 7D14-7D14;: 04/10/2001, mRNA sequence. (449 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG1583-RA feature: mRNA loc=X:join(7896493..7897332,7897511..789... 559 e-159 >CG1583-RA feature: mRNA loc=X:join(7896493..7897332, 7897511..7897985);ID=FBan0001583;gene_id=FBgn0030013;gene _sym=CG1583;sym=CG1583;scaffold=AE003443;len=1315 Length = 1315 Score = 559 bits (282), Expect = e-159 Identities = 282/282 (100%) Strand = Plus / Plus Query: 1 aaggccgagaccgtttgcgttcagcggggcggctccggaaaggagaccgatccgtgcctc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 721 aaggccgagaccgtttgcgttcagcggggcggctccggaaaggagaccgatccgtgcctc 780 Query: 61 aaggaggaggtgcgtcacaaggccttcctgcgcgacaacaagcggttctaagagacctag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 781 aaggaggaggtgcgtcacaaggccttcctgcgcgacaacaagcggttctaagagacctag 840 Query: 121 ttggcccacgacgaccggcaggaatttgtgtatcccaaagtcgcctgcccgcaaaaggag 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 841 ttggcccacgacgaccggcaggaatttgtgtatcccaaagtcgcctgcccgcaaaaggag 900 Query: 181 ctaaccaaacataccgccacatagtgctgcaattgggtttgaaactcaatgggagagcat 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 901 ctaaccaaacataccgccacatagtgctgcaattgggtttgaaactcaatgggagagcat 960 Query: 241 ggcaaaacaccatcatcatccgtacttagatgaacagattgt 282 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 961 ggcaaaacaccatcatcatccgtacttagatgaacagattgt 1002 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8516 Number of Sequences: 18737 Number of extensions: 8516 Number of successful extensions: 710 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 708 Number of HSP's gapped (non-prelim): 2 length of query: 449 length of database: 41,270,998 effective HSP length: 17 effective length of query: 432 effective length of database: 40,952,469 effective search space: 17691466608 effective search space used: 17691466608 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA735228|AA735228 LD01639.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD01639 5prime, mRNA sequence. (510 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG9328-RB feature: mRNA loc=2L:join(20767473..20768256,20782898.... 842 0.0 >CG9328-RB feature: mRNA loc=2L:join(20767473..20768256,20782898..20783099, 20783175..20783792);ID=FBan0009328;gene_id=FBgn0032886;g ene_sym=CG9328;sym=CG9328;scaffold=AE003668;len=1604 Length = 1604 Score = 842 bits (425), Expect = 0.0 Identities = 439/446 (98%) Strand = Plus / Plus Query: 2 agcgtgcgcgtacggtgctttcctcgcatgaagagtaaaaacaaattaaataccactgtg 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 agcgtgcgcgtacggtgctttcctcgcatgaagagtaaaaacaaattaaataccactgtg 60 Query: 62 gaataacatctcagcgaacgagtatacgtcggaaaccgatttgtcgcgctaagtaacacg 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gaataacatctcagcgaacgagtatacgtcggaaaccgatttgtcgcgctaagtaacacg 120 Query: 122 agatgcttttgggattcnnnnnnncccatatttatgtgatgatatattaatgtaaaccca 181 ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 121 agatgcttttgggattcaaaaaaacccatatttatgtgatgatatattaatgtaaaccca 180 Query: 182 ctgtttcgtttacattttcgtttttgaatgactggctgcggaaataactatagattcgcg 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 ctgtttcgtttacattttcgtttttgaatgactggctgcggaaataactatagattcgcg 240 Query: 242 aaagtacactaaatcaggcagtaaaatcggattggcaatcttgggaaaaaatcgaaggaa 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 aaagtacactaaatcaggcagtaaaatcggattggcaatcttgggaaaaaatcgaaggaa 300 Query: 302 aagagacgccagcagcttcctcggattgttttgttgttttcagttcgttagtgtgtggcc 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 aagagacgccagcagcttcctcggattgttttgttgttttcagttcgttagtgtgtggcc 360 Query: 362 gtttttccgcctgtgtttgtgcaacaaagtcaaagtcgtcgaagctgctgcaaaaatacg 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 gtttttccgcctgtgtttgtgcaacaaagtcaaagtcgtcgaagctgctgcaaaaatacg 420 Query: 422 tgaaatgcaaattgtgaaaaagttgc 447 |||||||||||||||||||||||||| Sbjct: 421 tgaaatgcaaattgtgaaaaagttgc 446 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,321 Number of Sequences: 18737 Number of extensions: 11321 Number of successful extensions: 259 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 256 Number of HSP's gapped (non-prelim): 2 length of query: 510 length of database: 41,270,998 effective HSP length: 17 effective length of query: 493 effective length of database: 40,952,469 effective search space: 20189567217 effective search space used: 20189567217 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA802741|AA802741 GM06241.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM06241 5prime, mRNA sequence. (521 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG3800-RA feature: mRNA loc=2R:complement(17978141..17980498);ID... 930 0.0 >CG3800-RA feature: mRNA loc=2R:complement(17978141..17980498);ID=FBan0003800;gene _id=FBgn0034802;gene_sym=CG3800;sym=CG3800;scaffold=AE003 459;len=2358 Length = 2358 Score = 930 bits (469), Expect = 0.0 Identities = 472/473 (99%) Strand = Plus / Plus Query: 29 gcagctgtgcagccgagagagcagatgacaccgacgacgaggaagaggatgaggtagaag 88 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1401 gcagctgtgcagccgagagagcagatgacaccgacgacgaggaagaggatgaggtagaag 1460 Query: 89 atgaggaagaagacacgacgacccaatttgtaagatgagactaaaccacaacagcaacaa 148 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1461 atgaggaagaagacacgacgacccaatttgtaagatgagactaaaccacaacagcaacaa 1520 Query: 149 caaaagaaatcaccaagcaaaccactctactataattatacctatatgattatatgatta 208 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1521 caaaagaaatcaccaagcaaaccactctactataattatacctatatgattatatgatta 1580 Query: 209 tgctgcaagtgtttgaatttactaattacattataacgaatggaatgaaactatataaga 268 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1581 tgctgcaagtgtttgaatttactaattacattataacgaatggaatgaaactatataaga 1640 Query: 269 ttatataaagaaaaataccttaaagaatactatttaaagcaaatgatcctattaggagtt 328 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1641 ttatataaagaaaaataccttaaagaatactatttaaagcaaatgatcctattaggagtt 1700 Query: 329 ccacagccagaaacaaccgaaagaaaaacgtaaataagaattataaaaaccaatgaaaaa 388 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1701 ccacagccagaaacaaccgaaagaaaaacgtaaataaaaattataaaaaccaatgaaaaa 1760 Query: 389 gcgaagaatcaggcggctagaagatcaggccacgttaccactcgactccactcaactcca 448 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1761 gcgaagaatcaggcggctagaagatcaggccacgttaccactcgactccactcaactcca 1820 Query: 449 ctccatccagctgctgccggcgagccttgggaattatccaggatctaagactg 501 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1821 ctccatccagctgctgccggcgagccttgggaattatccaggatctaagactg 1873 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 19,053 Number of Sequences: 18737 Number of extensions: 19053 Number of successful extensions: 1070 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1066 Number of HSP's gapped (non-prelim): 4 length of query: 521 length of database: 41,270,998 effective HSP length: 17 effective length of query: 504 effective length of database: 40,952,469 effective search space: 20640044376 effective search space used: 20640044376 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA821174|AA821174 GM14784.5prime GM Drosophila melanogaster ovary pOT2 Drosophila melanogaster cDNA clone GM14784 5 similar to CG2803: FBan0002803 'ligand binding or carrier' located on: 2R 60E5-60E5;: 04/10/2001, mRNA sequence. (585 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Tina-1-RA feature: mRNA loc=2R:complement(19984192..19984624,199... 1144 0.0 >Tina-1-RA feature: mRNA loc=2R:complement(19984192..19984624,19984692..19985011, 19985820..19985979);ID=FBan0002803;gene_id=FBgn0035083;g ene_sym=Tina-1;sym=CG2803;scaffold=AE003465;len=913 Length = 913 Score = 1144 bits (577), Expect = 0.0 Identities = 583/585 (99%) Strand = Plus / Plus Query: 1 cgcggttgtatctctgctggagctcgtgcgcactatcctatccaatcccgaagagctctc 60 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 25 cgcggttgtatctctgctggagctcgtgcacactatcctatccaatcccgaagagctctc 84 Query: 61 tcgcctttgcttagtgcagcaatttgcaattttaattatctgcaggcggttcgacaagaa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 85 tcgcctttgcttagtgcagcaatttgcaattttaattatctgcaggcggttcgacaagaa 144 Query: 121 aatgggccaagcaaagaaagtctcctccgccttgagcaagctcttcgtgtacggcgccct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 145 aatgggccaagcaaagaaagtctcctccgccttgagcaagctcttcgtgtacggcgccct 204 Query: 181 caagtacggacagcccagcaactcaatcctggccagctctggcaacggcttcgctaagtt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 205 caagtacggacagcccagcaactcaatcctggccagctctggcaacggcttcgctaagtt 264 Query: 241 ctggtgcaaggcgaccaccacccaaaagctgccgctagtgatcgccacccgctacaacat 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 265 ctggtgcaaggcgaccaccacccaaaagctgccgctagtgatcgccacccgctacaacat 324 Query: 301 tcccttcctgctgaacaagcccggagtgggatattacgtaacaggggagatctacgaggt 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 325 tcccttcctgctgaacaagcccggagtgggatattacgtaacaggggagatctacgaggt 384 Query: 361 ggacgatcgaatgctgaattccctggacaacctggaggattgcgaggagatctacactcg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 385 ggacgatcgaatgctgaattccctggacaacctggaggattgcgaggagatctacactcg 444 Query: 421 cgagatgcacgatatgaacattggcgttggagaaggaaccgttccatgctgggtgtacct 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 445 cgagatgcacgatatgaacattggcgttggagaaggaaccgttccatgctgggtgtacct 504 Query: 481 gctgcagaagtacccggagaacctacttagtctgcgctacttgtccagctacgagaactc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 505 gctgcagaagtacccggagaacctacttagtctgcgctacttgtccagctacgagaactc 564 Query: 541 aaccacccatccatacattatgcgccatcgccggacccacaagca 585 ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 565 aaccacccatccatacattatgcgccatcgccgcacccacaagca 609 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,706 Number of Sequences: 18737 Number of extensions: 14706 Number of successful extensions: 320 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 319 Number of HSP's gapped (non-prelim): 1 length of query: 585 length of database: 41,270,998 effective HSP length: 17 effective length of query: 568 effective length of database: 40,952,469 effective search space: 23261002392 effective search space used: 23261002392 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI294235|AI294235 LP07557.5prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP07557 5, mRNA sequence. (705 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31997-RA feature: mRNA loc=4:complement(174959..175215,175277.... 1275 0.0 >CG31997-RA feature: mRNA loc=4:complement(174959..175215,175277..175397, 176015..176302);ID=FBan0031997;gene_id=FBgn0051997;gene_ sym=CG31997;sym=CG31997;scaffold=AE003844;len=666 Length = 666 Score = 1275 bits (643), Expect = 0.0 Identities = 643/643 (100%) Strand = Plus / Plus Query: 1 cttcatttaggctggttaggtggttaattccatttgtcttcgttcttttgtattattttt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16 cttcatttaggctggttaggtggttaattccatttgtcttcgttcttttgtattattttt 75 Query: 61 acaaagcgataatattttaatcgtttatgattattacaatataacaaaaagttaacatct 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 76 acaaagcgataatattttaatcgtttatgattattacaatataacaaaaagttaacatct 135 Query: 121 ttggaatcttaaaaatgagttttcattttgctgtactgacccttattttaacagccttca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 136 ttggaatcttaaaaatgagttttcattttgctgtactgacccttattttaacagccttca 195 Query: 181 cagtttctctgtgtgctgaacaaaaaattacaaagagtgacgcaggtgaaatacgaattt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 196 cagtttctctgtgtgctgaacaaaaaattacaaagagtgacgcaggtgaaatacgaattt 255 Query: 241 tcaaacgtcttattcctgccgatgttctacgagattttccgggaatgtgctttgcttcaa 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 256 tcaaacgtcttattcctgccgatgttctacgagattttccgggaatgtgctttgcttcaa 315 Query: 301 ctcgatgtgccactgttgagcctggaaagtcgtgggaccttactccattctgcggtcgat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 316 ctcgatgtgccactgttgagcctggaaagtcgtgggaccttactccattctgcggtcgat 375 Query: 361 ctacttgtgttcaaaatgaggaaaatgatgcaaagctattcgaactcgtagaagactgcg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 376 ctacttgtgttcaaaatgaggaaaatgatgcaaagctattcgaactcgtagaagactgcg 435 Query: 421 gcccattgccactggcgaatgacaaatgtaaattggacacagagaagactaataaaaccg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 436 gcccattgccactggcgaatgacaaatgtaaattggacacagagaagactaataaaaccg 495 Query: 481 catcgtttccttattgctgccccatctttacatgtgaccccggtgttaaattggaatacc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 496 catcgtttccttattgctgccccatctttacatgtgaccccggtgttaaattggaatacc 555 Query: 541 ccgagatcggaaaggataatgacaaaaagaattctgagtgattcaaaacaaatatattat 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 556 ccgagatcggaaaggataatgacaaaaagaattctgagtgattcaaaacaaatatattat 615 Query: 601 gaaaacgtctgtcaatacaataaaaacatttgttgctttagtc 643 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 616 gaaaacgtctgtcaatacaataaaaacatttgttgctttagtc 658 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,326 Number of Sequences: 18737 Number of extensions: 14326 Number of successful extensions: 327 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 326 Number of HSP's gapped (non-prelim): 1 length of query: 705 length of database: 41,270,998 effective HSP length: 17 effective length of query: 688 effective length of database: 40,952,469 effective search space: 28175298672 effective search space used: 28175298672 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI388468|AI388468 GH19401.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH19401 5prime, mRNA sequence. (600 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value BEST:LD22483-RA feature: mRNA loc=2L:join(9996220..9996535,99969... 1086 0.0 >BEST:LD22483-RA feature: mRNA loc=2L:join(9996220..9996535,9996944..9996980, 9997833..9997915,9997977..9998826,9998884..9998994, 9999317..9999587,9999664..9999750,9999823..9999912, 9999976..10000350);ID=FBan0004747;gene_id=FBgn0043456;ge ne_sym=BEST:LD22483;sym=CG4747;scaffold=AE003627;len=222 0 Length = 2220 Score = 1086 bits (548), Expect = 0.0 Identities = 554/556 (99%) Strand = Plus / Plus Query: 45 tacgggtggcctgcaagcgaatatctgcgaaattcattgaatcccgacgccgagatttgt 104 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 89 tacgggtggcctgcaagcgaatatctccgaaattcattgaatcccgacgccgagatttgt 148 Query: 105 gttccgatccgagaaacccattagcttccgtgcaccgtccgcccaagccagcaaaataac 164 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 149 gctccgatccgagaaacccattagcttccgtgcaccgtccgcccaagccagcaaaataac 208 Query: 165 caagttcaacatacgcctggacaacataatgtcgaagaataaaaaactgtcgctgtcggg 224 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 209 caagttcaacatacgcctggacaacataatgtcgaagaataaaaaactgtcgctgtcggg 268 Query: 225 cggcgatacgacggagaaatttatttacaaacccaaggatctgatatgggccaaaatgaa 284 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 269 cggcgatacgacggagaaatttatttacaaacccaaggatctgatatgggccaaaatgaa 328 Query: 285 gggcttcactccgtggccaggaatgattgtcgatcctccacttgatctgctcagccagca 344 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 329 gggcttcactccgtggccaggaatgattgtcgatcctccacttgatctgctcagccagca 388 Query: 345 gcgtcgggcgaataccaaatgcgtgtttttctttggatctaggaattttgcctggattga 404 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 389 gcgtcgggcgaataccaaatgcgtgtttttctttggatctaggaattttgcctggattga 448 Query: 405 ggagaacaacatcaagcccttcgaaggaccgtggaaggaggaactggccaaggtgagcaa 464 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 449 ggagaacaacatcaagcccttcgaaggaccgtggaaggaggaactggccaaggtgagcaa 508 Query: 465 gcccgctgctttccgacacgccatgacggatatcgaaaagtacatcgacgaccccgccga 524 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 509 gcccgctgctttccgacacgccatgacggatatcgaaaagtacatcgacgaccccgccga 568 Query: 525 ggtggacgagcaggtgaacaaaagctgcggtgcgccgaatcacgcaaccgaggctgattt 584 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 569 ggtggacgagcaggtgaacaaaagctgcggtgcgccgaatcacgcaaccgaggctgattt 628 Query: 585 tgacaagatccgggat 600 |||||||||||||||| Sbjct: 629 tgacaagatccgggat 644 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,876 Number of Sequences: 18737 Number of extensions: 15876 Number of successful extensions: 423 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 421 Number of HSP's gapped (non-prelim): 2 length of query: 600 length of database: 41,270,998 effective HSP length: 17 effective length of query: 583 effective length of database: 40,952,469 effective search space: 23875289427 effective search space used: 23875289427 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI388507|AI388507 GH19447.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH19447 5 similar to GRHR: FBan0011325 'G protein linked receptor' located on: 2L 27A1-27A1;: 04/10/2001, mRNA sequence. (664 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value GRHR-RC feature: mRNA loc=2L:complement(6703498..6703958,6704563... 1316 0.0 GRHR-RB feature: mRNA loc=2L:complement(6703508..6704891,6704956... 1316 0.0 GRHR-RA feature: mRNA loc=2L:complement(6703498..6703958,6704554... 1316 0.0 >GRHR-RC feature: mRNA loc=2L:complement(6703498..6703958,6704563..6704891, 6704956..6705444,6705582..6705681,6705791..6706063, 6706771..6706983, 6708242..6708399);ID=FBan0011325;gene_id=FBgn0025595;gen e_sym=GRHR;sym=CG11325;scaffold=AE003614;len=2023 Length = 2023 Score = 1316 bits (664), Expect = 0.0 Identities = 664/664 (100%) Strand = Plus / Plus Query: 1 tcgatcggtgtgagtgtggatctggagtaccgttagtcgtagtcgtgtgtgccgttaaga 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18 tcgatcggtgtgagtgtggatctggagtaccgttagtcgtagtcgtgtgtgccgttaaga 77 Query: 61 agctctcgcatcgtcgatagcgataactacgcgcgtgggcggtgggcagtgtgaacggtg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 78 agctctcgcatcgtcgatagcgataactacgcgcgtgggcggtgggcagtgtgaacggtg 137 Query: 121 tattttcgtcgctgctgggagaataaaagacgttatctttgaggcaaatccttgatgcag 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 138 tattttcgtcgctgctgggagaataaaagacgttatctttgaggcaaatccttgatgcag 197 Query: 181 ttgcattcagatacaatttattagcttgtcccaaaaaatggcaaaagtagctgaggagaa 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 198 ttgcattcagatacaatttattagcttgtcccaaaaaatggcaaaagtagctgaggagaa 257 Query: 241 tgatcatcgtgatctaagtaattggtcgaatgtgaacgacaccaatggcaccattcacct 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 258 tgatcatcgtgatctaagtaattggtcgaatgtgaacgacaccaatggcaccattcacct 317 Query: 301 gaccaaggatatggtcttcaatgatggccaccgattgtccatcaccgtgtacagcatact 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 318 gaccaaggatatggtcttcaatgatggccaccgattgtccatcaccgtgtacagcatact 377 Query: 361 gtttgtgatctcaacaattggcaacagcaccgtgctgtatctgctgaccaagcggcgact 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 378 gtttgtgatctcaacaattggcaacagcaccgtgctgtatctgctgaccaagcggcgact 437 Query: 421 gcgcggtcccttgcgtattgatatcatgctaatgcatctggccatcgccgatctaatggt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 438 gcgcggtcccttgcgtattgatatcatgctaatgcatctggccatcgccgatctaatggt 497 Query: 481 gacgctgctcctgatgccaatggagatcgtgtgggcctggacggtgcagtggctatccac 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 498 gacgctgctcctgatgccaatggagatcgtgtgggcctggacggtgcagtggctatccac 557 Query: 541 ggacctgatgtgccgcctgatgagctttttccgcgtctttggcctgtatctgtccagcta 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 558 ggacctgatgtgccgcctgatgagctttttccgcgtctttggcctgtatctgtccagcta 617 Query: 601 cgtgatggtctgcatatcgctcgacagatactttgccatactgaagccgctcaagcggtc 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 618 cgtgatggtctgcatatcgctcgacagatactttgccatactgaagccgctcaagcggtc 677 Query: 661 ctac 664 |||| Sbjct: 678 ctac 681 >GRHR-RB feature: mRNA loc=2L:complement(6703508..6704891,6704956..6705444, 6705582..6705681,6705791..6706063,6706771..6706983, 6708242..6708399);ID=FBan0011325;gene_id=FBgn0025595;gen e_sym=GRHR;sym=CG11325;scaffold=AE003614;len=2617 Length = 2617 Score = 1316 bits (664), Expect = 0.0 Identities = 664/664 (100%) Strand = Plus / Plus Query: 1 tcgatcggtgtgagtgtggatctggagtaccgttagtcgtagtcgtgtgtgccgttaaga 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18 tcgatcggtgtgagtgtggatctggagtaccgttagtcgtagtcgtgtgtgccgttaaga 77 Query: 61 agctctcgcatcgtcgatagcgataactacgcgcgtgggcggtgggcagtgtgaacggtg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 78 agctctcgcatcgtcgatagcgataactacgcgcgtgggcggtgggcagtgtgaacggtg 137 Query: 121 tattttcgtcgctgctgggagaataaaagacgttatctttgaggcaaatccttgatgcag 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 138 tattttcgtcgctgctgggagaataaaagacgttatctttgaggcaaatccttgatgcag 197 Query: 181 ttgcattcagatacaatttattagcttgtcccaaaaaatggcaaaagtagctgaggagaa 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 198 ttgcattcagatacaatttattagcttgtcccaaaaaatggcaaaagtagctgaggagaa 257 Query: 241 tgatcatcgtgatctaagtaattggtcgaatgtgaacgacaccaatggcaccattcacct 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 258 tgatcatcgtgatctaagtaattggtcgaatgtgaacgacaccaatggcaccattcacct 317 Query: 301 gaccaaggatatggtcttcaatgatggccaccgattgtccatcaccgtgtacagcatact 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 318 gaccaaggatatggtcttcaatgatggccaccgattgtccatcaccgtgtacagcatact 377 Query: 361 gtttgtgatctcaacaattggcaacagcaccgtgctgtatctgctgaccaagcggcgact 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 378 gtttgtgatctcaacaattggcaacagcaccgtgctgtatctgctgaccaagcggcgact 437 Query: 421 gcgcggtcccttgcgtattgatatcatgctaatgcatctggccatcgccgatctaatggt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 438 gcgcggtcccttgcgtattgatatcatgctaatgcatctggccatcgccgatctaatggt 497 Query: 481 gacgctgctcctgatgccaatggagatcgtgtgggcctggacggtgcagtggctatccac 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 498 gacgctgctcctgatgccaatggagatcgtgtgggcctggacggtgcagtggctatccac 557 Query: 541 ggacctgatgtgccgcctgatgagctttttccgcgtctttggcctgtatctgtccagcta 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 558 ggacctgatgtgccgcctgatgagctttttccgcgtctttggcctgtatctgtccagcta 617 Query: 601 cgtgatggtctgcatatcgctcgacagatactttgccatactgaagccgctcaagcggtc 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 618 cgtgatggtctgcatatcgctcgacagatactttgccatactgaagccgctcaagcggtc 677 Query: 661 ctac 664 |||| Sbjct: 678 ctac 681 >GRHR-RA feature: mRNA loc=2L:complement(6703498..6703958,6704554..6704891, 6704956..6705444,6705582..6705681,6705791..6706063, 6706771..6706983, 6708242..6708399);ID=FBan0011325;gene_id=FBgn0025595;gen e_sym=GRHR;sym=CG11325;scaffold=AE003614;len=2032 Length = 2032 Score = 1316 bits (664), Expect = 0.0 Identities = 664/664 (100%) Strand = Plus / Plus Query: 1 tcgatcggtgtgagtgtggatctggagtaccgttagtcgtagtcgtgtgtgccgttaaga 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18 tcgatcggtgtgagtgtggatctggagtaccgttagtcgtagtcgtgtgtgccgttaaga 77 Query: 61 agctctcgcatcgtcgatagcgataactacgcgcgtgggcggtgggcagtgtgaacggtg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 78 agctctcgcatcgtcgatagcgataactacgcgcgtgggcggtgggcagtgtgaacggtg 137 Query: 121 tattttcgtcgctgctgggagaataaaagacgttatctttgaggcaaatccttgatgcag 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 138 tattttcgtcgctgctgggagaataaaagacgttatctttgaggcaaatccttgatgcag 197 Query: 181 ttgcattcagatacaatttattagcttgtcccaaaaaatggcaaaagtagctgaggagaa 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 198 ttgcattcagatacaatttattagcttgtcccaaaaaatggcaaaagtagctgaggagaa 257 Query: 241 tgatcatcgtgatctaagtaattggtcgaatgtgaacgacaccaatggcaccattcacct 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 258 tgatcatcgtgatctaagtaattggtcgaatgtgaacgacaccaatggcaccattcacct 317 Query: 301 gaccaaggatatggtcttcaatgatggccaccgattgtccatcaccgtgtacagcatact 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 318 gaccaaggatatggtcttcaatgatggccaccgattgtccatcaccgtgtacagcatact 377 Query: 361 gtttgtgatctcaacaattggcaacagcaccgtgctgtatctgctgaccaagcggcgact 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 378 gtttgtgatctcaacaattggcaacagcaccgtgctgtatctgctgaccaagcggcgact 437 Query: 421 gcgcggtcccttgcgtattgatatcatgctaatgcatctggccatcgccgatctaatggt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 438 gcgcggtcccttgcgtattgatatcatgctaatgcatctggccatcgccgatctaatggt 497 Query: 481 gacgctgctcctgatgccaatggagatcgtgtgggcctggacggtgcagtggctatccac 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 498 gacgctgctcctgatgccaatggagatcgtgtgggcctggacggtgcagtggctatccac 557 Query: 541 ggacctgatgtgccgcctgatgagctttttccgcgtctttggcctgtatctgtccagcta 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 558 ggacctgatgtgccgcctgatgagctttttccgcgtctttggcctgtatctgtccagcta 617 Query: 601 cgtgatggtctgcatatcgctcgacagatactttgccatactgaagccgctcaagcggtc 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 618 cgtgatggtctgcatatcgctcgacagatactttgccatactgaagccgctcaagcggtc 677 Query: 661 ctac 664 |||| Sbjct: 678 ctac 681 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,448 Number of Sequences: 18737 Number of extensions: 16448 Number of successful extensions: 369 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 366 Number of HSP's gapped (non-prelim): 3 length of query: 664 length of database: 41,270,998 effective HSP length: 17 effective length of query: 647 effective length of database: 40,952,469 effective search space: 26496247443 effective search space used: 26496247443 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI388523|AI388523 GH19464.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH19464 3prime, mRNA sequence. (545 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32332-RE feature: mRNA loc=3L:join(1232641..1233861,1233933..1... 490 e-138 CG32332-RD feature: mRNA loc=3L:join(1232641..1233861,1233933..1... 490 e-138 CG32332-RC feature: mRNA loc=3L:join(1232641..1233861,1233933..1... 490 e-138 CG32332-RB feature: mRNA loc=3L:join(1232641..1233861,1233933..1... 490 e-138 CG32332-RA feature: mRNA loc=3L:join(1234482..1234622,1234705..1... 490 e-138 >CG32332-RE feature: mRNA loc=3L:join(1232641..1233861,1233933..1234352, 1234705..1235673, 1236117..1236617);ID=FBan0032332;gene_id=FBgn0052332;gene _sym=CG32332;sym=CG32332;scaffold=AE003471;len=3111 Length = 3111 Score = 490 bits (247), Expect = e-138 Identities = 247/247 (100%) Strand = Plus / Minus Query: 299 accggttagcatctcctcggaaacataggtctccgtggtcaccttgctgatcggaagggt 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2796 accggttagcatctcctcggaaacataggtctccgtggtcaccttgctgatcggaagggt 2737 Query: 359 tacgggctgcttgggcgtccgcagctcgatctcgatggtattcttcttgtgctgcgactt 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2736 tacgggctgcttgggcgtccgcagctcgatctcgatggtattcttcttgtgctgcgactt 2677 Query: 419 ggccttacttcccagttttactaggaacacgtcgctgtcggtctcctcgcaggtcttgta 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2676 ggccttacttcccagttttactaggaacacgtcgctgtcggtctcctcgcaggtcttgta 2617 Query: 479 gcaaacctcgatacccttgcgccttgtgtccaaattgacacccttcatggtgtccatgat 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2616 gcaaacctcgatacccttgcgccttgtgtccaaattgacacccttcatggtgtccatgat 2557 Query: 539 gtccttc 545 ||||||| Sbjct: 2556 gtccttc 2550 Score = 466 bits (235), Expect = e-131 Identities = 235/235 (100%) Strand = Plus / Minus Query: 1 cttaattttaattcaatcaaaagcatacatttacgtaactagtcgaaaaagtgagtgttc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3094 cttaattttaattcaatcaaaagcatacatttacgtaactagtcgaaaaagtgagtgttc 3035 Query: 61 gtgcatcttactggacgggttaatatgaatgggttagtaccagagccaaatttcaataat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3034 gtgcatcttactggacgggttaatatgaatgggttagtaccagagccaaatttcaataat 2975 Query: 121 tgctgctgtgaattttcaaagagtcgcttccaaaatgccaaaggatgtgttccgaaaggg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2974 tgctgctgtgaattttcaaagagtcgcttccaaaatgccaaaggatgtgttccgaaaggg 2915 Query: 181 taagcgtcaagtccggtcgatgggaatgggatccgcctacggatctcttggtcta 235 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2914 taagcgtcaagtccggtcgatgggaatgggatccgcctacggatctcttggtcta 2860 >CG32332-RD feature: mRNA loc=3L:join(1232641..1233861,1233933..1234352, 1234705..1235673, 1236117..1236617);ID=FBan0032332;gene_id=FBgn0052332;gene _sym=CG32332;sym=CG32332;scaffold=AE003471;len=3111 Length = 3111 Score = 490 bits (247), Expect = e-138 Identities = 247/247 (100%) Strand = Plus / Minus Query: 299 accggttagcatctcctcggaaacataggtctccgtggtcaccttgctgatcggaagggt 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2796 accggttagcatctcctcggaaacataggtctccgtggtcaccttgctgatcggaagggt 2737 Query: 359 tacgggctgcttgggcgtccgcagctcgatctcgatggtattcttcttgtgctgcgactt 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2736 tacgggctgcttgggcgtccgcagctcgatctcgatggtattcttcttgtgctgcgactt 2677 Query: 419 ggccttacttcccagttttactaggaacacgtcgctgtcggtctcctcgcaggtcttgta 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2676 ggccttacttcccagttttactaggaacacgtcgctgtcggtctcctcgcaggtcttgta 2617 Query: 479 gcaaacctcgatacccttgcgccttgtgtccaaattgacacccttcatggtgtccatgat 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2616 gcaaacctcgatacccttgcgccttgtgtccaaattgacacccttcatggtgtccatgat 2557 Query: 539 gtccttc 545 ||||||| Sbjct: 2556 gtccttc 2550 Score = 466 bits (235), Expect = e-131 Identities = 235/235 (100%) Strand = Plus / Minus Query: 1 cttaattttaattcaatcaaaagcatacatttacgtaactagtcgaaaaagtgagtgttc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3094 cttaattttaattcaatcaaaagcatacatttacgtaactagtcgaaaaagtgagtgttc 3035 Query: 61 gtgcatcttactggacgggttaatatgaatgggttagtaccagagccaaatttcaataat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3034 gtgcatcttactggacgggttaatatgaatgggttagtaccagagccaaatttcaataat 2975 Query: 121 tgctgctgtgaattttcaaagagtcgcttccaaaatgccaaaggatgtgttccgaaaggg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2974 tgctgctgtgaattttcaaagagtcgcttccaaaatgccaaaggatgtgttccgaaaggg 2915 Query: 181 taagcgtcaagtccggtcgatgggaatgggatccgcctacggatctcttggtcta 235 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2914 taagcgtcaagtccggtcgatgggaatgggatccgcctacggatctcttggtcta 2860 >CG32332-RC feature: mRNA loc=3L:join(1232641..1233861,1233933..1234352, 1234705..1234953,1235027..1235673, 1236117..1236617);ID=FBan0032332;gene_id=FBgn0052332;gene _sym=CG32332;sym=CG32332;scaffold=AE003471;len=3038 Length = 3038 Score = 490 bits (247), Expect = e-138 Identities = 247/247 (100%) Strand = Plus / Minus Query: 299 accggttagcatctcctcggaaacataggtctccgtggtcaccttgctgatcggaagggt 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2723 accggttagcatctcctcggaaacataggtctccgtggtcaccttgctgatcggaagggt 2664 Query: 359 tacgggctgcttgggcgtccgcagctcgatctcgatggtattcttcttgtgctgcgactt 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2663 tacgggctgcttgggcgtccgcagctcgatctcgatggtattcttcttgtgctgcgactt 2604 Query: 419 ggccttacttcccagttttactaggaacacgtcgctgtcggtctcctcgcaggtcttgta 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2603 ggccttacttcccagttttactaggaacacgtcgctgtcggtctcctcgcaggtcttgta 2544 Query: 479 gcaaacctcgatacccttgcgccttgtgtccaaattgacacccttcatggtgtccatgat 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2543 gcaaacctcgatacccttgcgccttgtgtccaaattgacacccttcatggtgtccatgat 2484 Query: 539 gtccttc 545 ||||||| Sbjct: 2483 gtccttc 2477 Score = 466 bits (235), Expect = e-131 Identities = 235/235 (100%) Strand = Plus / Minus Query: 1 cttaattttaattcaatcaaaagcatacatttacgtaactagtcgaaaaagtgagtgttc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3021 cttaattttaattcaatcaaaagcatacatttacgtaactagtcgaaaaagtgagtgttc 2962 Query: 61 gtgcatcttactggacgggttaatatgaatgggttagtaccagagccaaatttcaataat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2961 gtgcatcttactggacgggttaatatgaatgggttagtaccagagccaaatttcaataat 2902 Query: 121 tgctgctgtgaattttcaaagagtcgcttccaaaatgccaaaggatgtgttccgaaaggg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2901 tgctgctgtgaattttcaaagagtcgcttccaaaatgccaaaggatgtgttccgaaaggg 2842 Query: 181 taagcgtcaagtccggtcgatgggaatgggatccgcctacggatctcttggtcta 235 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2841 taagcgtcaagtccggtcgatgggaatgggatccgcctacggatctcttggtcta 2787 >CG32332-RB feature: mRNA loc=3L:join(1232641..1233861,1233933..1234352, 1234705..1234953,1235027..1235673, 1236117..1236617);ID=FBan0032332;gene_id=FBgn0052332;gene _sym=CG32332;sym=CG32332;scaffold=AE003471;len=3038 Length = 3038 Score = 490 bits (247), Expect = e-138 Identities = 247/247 (100%) Strand = Plus / Minus Query: 299 accggttagcatctcctcggaaacataggtctccgtggtcaccttgctgatcggaagggt 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2723 accggttagcatctcctcggaaacataggtctccgtggtcaccttgctgatcggaagggt 2664 Query: 359 tacgggctgcttgggcgtccgcagctcgatctcgatggtattcttcttgtgctgcgactt 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2663 tacgggctgcttgggcgtccgcagctcgatctcgatggtattcttcttgtgctgcgactt 2604 Query: 419 ggccttacttcccagttttactaggaacacgtcgctgtcggtctcctcgcaggtcttgta 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2603 ggccttacttcccagttttactaggaacacgtcgctgtcggtctcctcgcaggtcttgta 2544 Query: 479 gcaaacctcgatacccttgcgccttgtgtccaaattgacacccttcatggtgtccatgat 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2543 gcaaacctcgatacccttgcgccttgtgtccaaattgacacccttcatggtgtccatgat 2484 Query: 539 gtccttc 545 ||||||| Sbjct: 2483 gtccttc 2477 Score = 466 bits (235), Expect = e-131 Identities = 235/235 (100%) Strand = Plus / Minus Query: 1 cttaattttaattcaatcaaaagcatacatttacgtaactagtcgaaaaagtgagtgttc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3021 cttaattttaattcaatcaaaagcatacatttacgtaactagtcgaaaaagtgagtgttc 2962 Query: 61 gtgcatcttactggacgggttaatatgaatgggttagtaccagagccaaatttcaataat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2961 gtgcatcttactggacgggttaatatgaatgggttagtaccagagccaaatttcaataat 2902 Query: 121 tgctgctgtgaattttcaaagagtcgcttccaaaatgccaaaggatgtgttccgaaaggg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2901 tgctgctgtgaattttcaaagagtcgcttccaaaatgccaaaggatgtgttccgaaaggg 2842 Query: 181 taagcgtcaagtccggtcgatgggaatgggatccgcctacggatctcttggtcta 235 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2841 taagcgtcaagtccggtcgatgggaatgggatccgcctacggatctcttggtcta 2787 >CG32332-RA feature: mRNA loc=3L:join(1234482..1234622,1234705..1234953, 1235027..1235673, 1236117..1236617);ID=FBan0032332;gene_id=FBgn0052332;gene _sym=CG32332;sym=CG32332;scaffold=AE003471;len=1538 Length = 1538 Score = 490 bits (247), Expect = e-138 Identities = 247/247 (100%) Strand = Plus / Minus Query: 299 accggttagcatctcctcggaaacataggtctccgtggtcaccttgctgatcggaagggt 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1223 accggttagcatctcctcggaaacataggtctccgtggtcaccttgctgatcggaagggt 1164 Query: 359 tacgggctgcttgggcgtccgcagctcgatctcgatggtattcttcttgtgctgcgactt 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1163 tacgggctgcttgggcgtccgcagctcgatctcgatggtattcttcttgtgctgcgactt 1104 Query: 419 ggccttacttcccagttttactaggaacacgtcgctgtcggtctcctcgcaggtcttgta 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1103 ggccttacttcccagttttactaggaacacgtcgctgtcggtctcctcgcaggtcttgta 1044 Query: 479 gcaaacctcgatacccttgcgccttgtgtccaaattgacacccttcatggtgtccatgat 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1043 gcaaacctcgatacccttgcgccttgtgtccaaattgacacccttcatggtgtccatgat 984 Query: 539 gtccttc 545 ||||||| Sbjct: 983 gtccttc 977 Score = 466 bits (235), Expect = e-131 Identities = 235/235 (100%) Strand = Plus / Minus Query: 1 cttaattttaattcaatcaaaagcatacatttacgtaactagtcgaaaaagtgagtgttc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1521 cttaattttaattcaatcaaaagcatacatttacgtaactagtcgaaaaagtgagtgttc 1462 Query: 61 gtgcatcttactggacgggttaatatgaatgggttagtaccagagccaaatttcaataat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1461 gtgcatcttactggacgggttaatatgaatgggttagtaccagagccaaatttcaataat 1402 Query: 121 tgctgctgtgaattttcaaagagtcgcttccaaaatgccaaaggatgtgttccgaaaggg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1401 tgctgctgtgaattttcaaagagtcgcttccaaaatgccaaaggatgtgttccgaaaggg 1342 Query: 181 taagcgtcaagtccggtcgatgggaatgggatccgcctacggatctcttggtcta 235 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1341 taagcgtcaagtccggtcgatgggaatgggatccgcctacggatctcttggtcta 1287 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,481 Number of Sequences: 18737 Number of extensions: 10481 Number of successful extensions: 267 Number of sequences better than 1.0e-100: 5 Number of HSP's better than 0.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 257 Number of HSP's gapped (non-prelim): 10 length of query: 545 length of database: 41,270,998 effective HSP length: 17 effective length of query: 528 effective length of database: 40,952,469 effective search space: 21622903632 effective search space used: 21622903632 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI388590|AI388590 GH19547.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH19547 3prime, mRNA sequence. (598 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG4847-RE feature: mRNA loc=2R:join(12575955..12575988,12576182.... 793 0.0 CG4847-RD feature: mRNA loc=2R:join(12575960..12576440,12576501.... 793 0.0 CG4847-RC feature: mRNA loc=2R:join(12575955..12575988,12576177.... 793 0.0 CG4847-RB feature: mRNA loc=2R:join(12576151..12576440,12576501.... 793 0.0 CG4847-RA feature: mRNA loc=2R:join(12575248..12575269,12576177.... 793 0.0 Pof-RA feature: mRNA loc=2R:join(19712984..19713415,19713470..19... 369 e-101 >CG4847-RE feature: mRNA loc=2R:join(12575955..12575988,12576182..12576440, 12576501..12576709, 12576775..12577584);ID=FBan0004847;gene_id=FBgn0034229;ge ne_sym=CG4847;sym=CG4847;scaffold=AE003803;len=1312 Length = 1312 Score = 793 bits (400), Expect = 0.0 Identities = 400/400 (100%) Strand = Plus / Minus Query: 1 ataattaagaaaagacttttatttaagaaatggacgcaaccaacgccaagtccacatcac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1310 ataattaagaaaagacttttatttaagaaatggacgcaaccaacgccaagtccacatcac 1251 Query: 61 aaactgcacagtaaattttgccataaatttcggattccccgcttaaaccacgggatagga 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1250 aaactgcacagtaaattttgccataaatttcggattccccgcttaaaccacgggatagga 1191 Query: 121 gcactcctcagcaatgaagcagtagtttttgccgcgaggcaggcggaagtagcccttttc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1190 gcactcctcagcaatgaagcagtagtttttgccgcgaggcaggcggaagtagcccttttc 1131 Query: 181 gccccaggtgtcgtcccaggagttcttgacgatccagtaatcctgtcctttctccgatcc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1130 gccccaggtgtcgtcccaggagttcttgacgatccagtaatcctgtcctttctccgatcc 1071 Query: 241 gtaaccgacgaccagaatggagtggttcggctcgcccttgttgcactcatcgtcgttata 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1070 gtaaccgacgaccagaatggagtggttcggctcgcccttgttgcactcatcgtcgttata 1011 Query: 301 gatgccaccggcgtagttcttaagagtctccaaaccattcaccgaacaggcaactggtcc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1010 gatgccaccggcgtagttcttaagagtctccaaaccattcaccgaacaggcaactggtcc 951 Query: 361 cagagtggccaccaccttcttcagctgctcctcgtccttg 400 |||||||||||||||||||||||||||||||||||||||| Sbjct: 950 cagagtggccaccaccttcttcagctgctcctcgtccttg 911 >CG4847-RD feature: mRNA loc=2R:join(12575960..12576440,12576501..12576709, 12576775..12577584);ID=FBan0004847;gene_id=FBgn0034229;ge ne_sym=CG4847;sym=CG4847;scaffold=AE003803;len=1500 Length = 1500 Score = 793 bits (400), Expect = 0.0 Identities = 400/400 (100%) Strand = Plus / Minus Query: 1 ataattaagaaaagacttttatttaagaaatggacgcaaccaacgccaagtccacatcac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1498 ataattaagaaaagacttttatttaagaaatggacgcaaccaacgccaagtccacatcac 1439 Query: 61 aaactgcacagtaaattttgccataaatttcggattccccgcttaaaccacgggatagga 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1438 aaactgcacagtaaattttgccataaatttcggattccccgcttaaaccacgggatagga 1379 Query: 121 gcactcctcagcaatgaagcagtagtttttgccgcgaggcaggcggaagtagcccttttc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1378 gcactcctcagcaatgaagcagtagtttttgccgcgaggcaggcggaagtagcccttttc 1319 Query: 181 gccccaggtgtcgtcccaggagttcttgacgatccagtaatcctgtcctttctccgatcc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1318 gccccaggtgtcgtcccaggagttcttgacgatccagtaatcctgtcctttctccgatcc 1259 Query: 241 gtaaccgacgaccagaatggagtggttcggctcgcccttgttgcactcatcgtcgttata 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1258 gtaaccgacgaccagaatggagtggttcggctcgcccttgttgcactcatcgtcgttata 1199 Query: 301 gatgccaccggcgtagttcttaagagtctccaaaccattcaccgaacaggcaactggtcc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1198 gatgccaccggcgtagttcttaagagtctccaaaccattcaccgaacaggcaactggtcc 1139 Query: 361 cagagtggccaccaccttcttcagctgctcctcgtccttg 400 |||||||||||||||||||||||||||||||||||||||| Sbjct: 1138 cagagtggccaccaccttcttcagctgctcctcgtccttg 1099 >CG4847-RC feature: mRNA loc=2R:join(12575955..12575988,12576177..12576440, 12576501..12576709, 12576775..12577584);ID=FBan0004847;gene_id=FBgn0034229;ge ne_sym=CG4847;sym=CG4847;scaffold=AE003803;len=1317 Length = 1317 Score = 793 bits (400), Expect = 0.0 Identities = 400/400 (100%) Strand = Plus / Minus Query: 1 ataattaagaaaagacttttatttaagaaatggacgcaaccaacgccaagtccacatcac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1315 ataattaagaaaagacttttatttaagaaatggacgcaaccaacgccaagtccacatcac 1256 Query: 61 aaactgcacagtaaattttgccataaatttcggattccccgcttaaaccacgggatagga 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1255 aaactgcacagtaaattttgccataaatttcggattccccgcttaaaccacgggatagga 1196 Query: 121 gcactcctcagcaatgaagcagtagtttttgccgcgaggcaggcggaagtagcccttttc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1195 gcactcctcagcaatgaagcagtagtttttgccgcgaggcaggcggaagtagcccttttc 1136 Query: 181 gccccaggtgtcgtcccaggagttcttgacgatccagtaatcctgtcctttctccgatcc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1135 gccccaggtgtcgtcccaggagttcttgacgatccagtaatcctgtcctttctccgatcc 1076 Query: 241 gtaaccgacgaccagaatggagtggttcggctcgcccttgttgcactcatcgtcgttata 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1075 gtaaccgacgaccagaatggagtggttcggctcgcccttgttgcactcatcgtcgttata 1016 Query: 301 gatgccaccggcgtagttcttaagagtctccaaaccattcaccgaacaggcaactggtcc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1015 gatgccaccggcgtagttcttaagagtctccaaaccattcaccgaacaggcaactggtcc 956 Query: 361 cagagtggccaccaccttcttcagctgctcctcgtccttg 400 |||||||||||||||||||||||||||||||||||||||| Sbjct: 955 cagagtggccaccaccttcttcagctgctcctcgtccttg 916 >CG4847-RB feature: mRNA loc=2R:join(12576151..12576440,12576501..12576709, 12576775..12577584);ID=FBan0004847;gene_id=FBgn0034229;ge ne_sym=CG4847;sym=CG4847;scaffold=AE003803;len=1309 Length = 1309 Score = 793 bits (400), Expect = 0.0 Identities = 400/400 (100%) Strand = Plus / Minus Query: 1 ataattaagaaaagacttttatttaagaaatggacgcaaccaacgccaagtccacatcac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1307 ataattaagaaaagacttttatttaagaaatggacgcaaccaacgccaagtccacatcac 1248 Query: 61 aaactgcacagtaaattttgccataaatttcggattccccgcttaaaccacgggatagga 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1247 aaactgcacagtaaattttgccataaatttcggattccccgcttaaaccacgggatagga 1188 Query: 121 gcactcctcagcaatgaagcagtagtttttgccgcgaggcaggcggaagtagcccttttc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1187 gcactcctcagcaatgaagcagtagtttttgccgcgaggcaggcggaagtagcccttttc 1128 Query: 181 gccccaggtgtcgtcccaggagttcttgacgatccagtaatcctgtcctttctccgatcc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1127 gccccaggtgtcgtcccaggagttcttgacgatccagtaatcctgtcctttctccgatcc 1068 Query: 241 gtaaccgacgaccagaatggagtggttcggctcgcccttgttgcactcatcgtcgttata 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1067 gtaaccgacgaccagaatggagtggttcggctcgcccttgttgcactcatcgtcgttata 1008 Query: 301 gatgccaccggcgtagttcttaagagtctccaaaccattcaccgaacaggcaactggtcc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1007 gatgccaccggcgtagttcttaagagtctccaaaccattcaccgaacaggcaactggtcc 948 Query: 361 cagagtggccaccaccttcttcagctgctcctcgtccttg 400 |||||||||||||||||||||||||||||||||||||||| Sbjct: 947 cagagtggccaccaccttcttcagctgctcctcgtccttg 908 >CG4847-RA feature: mRNA loc=2R:join(12575248..12575269,12576177..12576440, 12576501..12576709, 12576775..12577584);ID=FBan0004847;gene_id=FBgn0034229;ge ne_sym=CG4847;sym=CG4847;scaffold=AE003803;len=1305 Length = 1305 Score = 793 bits (400), Expect = 0.0 Identities = 400/400 (100%) Strand = Plus / Minus Query: 1 ataattaagaaaagacttttatttaagaaatggacgcaaccaacgccaagtccacatcac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1303 ataattaagaaaagacttttatttaagaaatggacgcaaccaacgccaagtccacatcac 1244 Query: 61 aaactgcacagtaaattttgccataaatttcggattccccgcttaaaccacgggatagga 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1243 aaactgcacagtaaattttgccataaatttcggattccccgcttaaaccacgggatagga 1184 Query: 121 gcactcctcagcaatgaagcagtagtttttgccgcgaggcaggcggaagtagcccttttc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1183 gcactcctcagcaatgaagcagtagtttttgccgcgaggcaggcggaagtagcccttttc 1124 Query: 181 gccccaggtgtcgtcccaggagttcttgacgatccagtaatcctgtcctttctccgatcc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1123 gccccaggtgtcgtcccaggagttcttgacgatccagtaatcctgtcctttctccgatcc 1064 Query: 241 gtaaccgacgaccagaatggagtggttcggctcgcccttgttgcactcatcgtcgttata 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1063 gtaaccgacgaccagaatggagtggttcggctcgcccttgttgcactcatcgtcgttata 1004 Query: 301 gatgccaccggcgtagttcttaagagtctccaaaccattcaccgaacaggcaactggtcc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1003 gatgccaccggcgtagttcttaagagtctccaaaccattcaccgaacaggcaactggtcc 944 Query: 361 cagagtggccaccaccttcttcagctgctcctcgtccttg 400 |||||||||||||||||||||||||||||||||||||||| Sbjct: 943 cagagtggccaccaccttcttcagctgctcctcgtccttg 904 >Pof-RA feature: mRNA loc=2R:join(19712984..19713415,19713470..19714354, 19714416..19714607, 19714666..19715086);ID=FBan0003691;gene_id=FBgn0035047;g ene_sym=Pof;sym=CG3691;scaffold=AE003464;len=1930 Length = 1930 Score = 369 bits (186), Expect = e-101 Identities = 195/198 (98%) Strand = Plus / Plus Query: 401 tatagaacagacttttccagtttccacaactttagctaggaacacgttccacatttttcc 460 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 74 tatagaacagacttttccagtttccacaactttagctaggaacacgttccacatttttcc 133 Query: 461 acatttttgataccttaacaaaatggattcaaaacgcgcggcccttgaatccggcgacgg 520 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 134 acatttttgataccttaacaaaatggattcaaaacgcgcggcccttgaatccggcgacgg 193 Query: 521 tccggacgccaagcgccttgataccaccgatgatcaagacaaatatacgtcggggggcga 580 ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct: 194 tccggacgccaagcgccttgataccaccgatgatcaagacaaagaagcgtcggggggcga 253 Query: 581 cggcagtcaggttatgct 598 |||||||||||||||||| Sbjct: 254 cggcagtcaggttatgct 271 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,444 Number of Sequences: 18737 Number of extensions: 14444 Number of successful extensions: 378 Number of sequences better than 1.0e-100: 6 Number of HSP's better than 0.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 372 Number of HSP's gapped (non-prelim): 6 length of query: 598 length of database: 41,270,998 effective HSP length: 17 effective length of query: 581 effective length of database: 40,952,469 effective search space: 23793384489 effective search space used: 23793384489 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI388726|AI388726 GH19718.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH19718 5, mRNA sequence. (698 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,762 Number of Sequences: 18737 Number of extensions: 15762 Number of successful extensions: 438 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 438 Number of HSP's gapped (non-prelim): 0 length of query: 698 length of database: 41,270,998 effective HSP length: 17 effective length of query: 681 effective length of database: 40,952,469 effective search space: 27888631389 effective search space used: 27888631389 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI388952|AI388952 GH20014.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH20014 5, mRNA sequence. (559 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31538-RA feature: mRNA loc=3R:complement(1101391..1103554);ID=... 1108 0.0 >CG31538-RA feature: mRNA loc=3R:complement(1101391..1103554);ID=FBan0031538;gene_ id=FBgn0051538;gene_sym=CG31538;sym=CG31538;scaffold=AE0 03603;len=2164 Length = 2164 Score = 1108 bits (559), Expect = 0.0 Identities = 559/559 (100%) Strand = Plus / Plus Query: 1 agctctccaaaatagaaaattcgaatttatttattcagtgttttgttggtcttacgagtc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 91 agctctccaaaatagaaaattcgaatttatttattcagtgttttgttggtcttacgagtc 150 Query: 61 cgtgaaatcgagttctttagtccgtgaagaaacgtgcttcgttttcgcaggtttttgcta 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 151 cgtgaaatcgagttctttagtccgtgaagaaacgtgcttcgttttcgcaggtttttgcta 210 Query: 121 aattgttcgtgtatccattggttcacattatgagtactcatcagtatagcctggggaggc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 211 aattgttcgtgtatccattggttcacattatgagtactcatcagtatagcctggggaggc 270 Query: 181 tggcccgccgaggcttcagcctgcggatgaatccgctggccggcacactgcaaaggcttt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 271 tggcccgccgaggcttcagcctgcggatgaatccgctggccggcacactgcaaaggcttt 330 Query: 241 accacacccgtagcaggccatgtgtggcccagagtgtgagccaggtgggtgaacggtcca 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 331 accacacccgtagcaggccatgtgtggcccagagtgtgagccaggtgggtgaacggtcca 390 Query: 301 agccaacgttgcagccctacgacttcgaccgaagccgggtgcgtaaaattgccggcgaga 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 391 agccaacgttgcagccctacgacttcgaccgaagccgggtgcgtaaaattgccggcgaga 450 Query: 361 ggaagacgctggtcgaccaggtgcggggcatgagcacaagcctgggacatgccaagttgg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 451 ggaagacgctggtcgaccaggtgcggggcatgagcacaagcctgggacatgccaagttgg 510 Query: 421 tgccccaaaagatgtacggcaagacgaggctgttctcctccggaagcaccctctacagtc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 511 tgccccaaaagatgtacggcaagacgaggctgttctcctccggaagcaccctctacagtc 570 Query: 481 gcttgcagcatctggaacagcagaacgaggaatattcgagtcgagagtcccagccgacgc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 571 gcttgcagcatctggaacagcagaacgaggaatattcgagtcgagagtcccagccgacgc 630 Query: 541 acaccacagcctcattgtc 559 ||||||||||||||||||| Sbjct: 631 acaccacagcctcattgtc 649 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,969 Number of Sequences: 18737 Number of extensions: 11969 Number of successful extensions: 194 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 193 Number of HSP's gapped (non-prelim): 1 length of query: 559 length of database: 41,270,998 effective HSP length: 17 effective length of query: 542 effective length of database: 40,952,469 effective search space: 22196238198 effective search space used: 22196238198 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI389134|AI389134 GH20229.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH20229 3prime, mRNA sequence. (535 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG4286-RA feature: mRNA loc=2R:complement(16221290..16221677,162... 957 0.0 >CG4286-RA feature: mRNA loc=2R:complement(16221290..16221677, 16221740..16222180);ID=FBan0004286;gene_id=FBgn0034601;g ene_sym=CG4286;sym=CG4286;scaffold=AE003453;len=829 Length = 829 Score = 957 bits (483), Expect = 0.0 Identities = 522/535 (97%) Strand = Plus / Plus Query: 1 aaacattccactcgaaacgagctactcccccaaattcgaacccccttccaaccatccgcc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12 aaacattccactcgaaacgagctactcccccaaattcgaacccccttccaaccatccgcc 71 Query: 61 cctccattcattttggagaaccaaagtcatggggcaccgcctccagctccgtagcgatga 120 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 72 cctccattcatcttggagaaccaaagtcatggcgcaccgcctccagctccgtagcgatga 131 Query: 121 cttcgacgttatcggcgccgggccccgcaatctgtccgtgatcaaaaacttcctgaagcg 180 |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct: 132 cttcgacgttatcggcgccgtgccccgcaatctgtccgtgatcaagaacttcctgaagcg 191 Query: 181 ggactgggccatcaagaaactgatcgacatcgaggaagagttcctgcaggaatgcgtatt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 192 ggactgtgccatcaagaaactgatcgacatcgaggaagagttcctgcaggaatgcgtatt 251 Query: 241 gcgcggccaggatcccatgaatccgaagggtaaacgtgacagtgacagggggccacatgg 300 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 252 gcgcggccaggatcccatgaatccgaagggtaaacgtgacagtgacagtgggccacatgg 311 Query: 301 taggggtttgggatccaatgggcccgaacccaagccggatccatgtgctaccaagacacc 360 ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 312 tagtggtttgggatccaatgtgcccgaacccaagccggatccatgtgctaccaagacacc 371 Query: 361 ggagaacacattggcctccgactactgtgatccctgtcgccgactcaagacctccggggg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 372 ggagaacacattggcctccgactactgtgatccctgtcgccgactcaagacctccgtggt 431 Query: 421 tcccgaagagctaaccaagccggccatcacaaatccgggtttcaacaaatccctgccgcc 480 || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 432 tctcgaagagctaaccaagccggccatcacaaatccggctttcaacaaatccctgccgcc 491 Query: 481 gtacttcgatgaagagagcgtgatgggcaactcgttgcccgtgaagatccgtttc 535 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 492 gtacttcgatgaagagagcgtgatgggcaactcgttgcccgtgaagttccgtttc 546 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,019 Number of Sequences: 18737 Number of extensions: 11019 Number of successful extensions: 230 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 229 Number of HSP's gapped (non-prelim): 1 length of query: 535 length of database: 41,270,998 effective HSP length: 17 effective length of query: 518 effective length of database: 40,952,469 effective search space: 21213378942 effective search space used: 21213378942 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI389148|AI389148 GH20248.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH20248 5 similar to CG5839: FBan0005839 'peptidase' located on: 3R 93F4-93F6;: 04/10/2001, mRNA sequence. (683 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31343-RA feature: mRNA loc=3R:join(17561955..17562541,17562872... 1354 0.0 >CG31343-RA feature: mRNA loc=3R:join(17561955..17562541,17562872..17563027, 17563160..17563873,17564076..17565303, 17565374..17565687);ID=FBan0031343;gene_id=FBgn0051343;ge ne_sym=CG31343;sym=CG31343;scaffold=AE003736;len=2999 Length = 2999 Score = 1354 bits (683), Expect = 0.0 Identities = 683/683 (100%) Strand = Plus / Plus Query: 1 ctgtacgatacgtacatctttgtcagcaccgatcgcctgagccacagcatcctgctggag 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1933 ctgtacgatacgtacatctttgtcagcaccgatcgcctgagccacagcatcctgctggag 1992 Query: 61 ctgctgggttacctgactaatgagcagcagtatgctccttggtccactgccaacactatt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1993 ctgctgggttacctgactaatgagcagcagtatgctccttggtccactgccaacactatt 2052 Query: 121 ctgaccgtctacgatcgttacttgcgtggcgatgattcttactacaacttccaagatttc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2053 ctgaccgtctacgatcgttacttgcgtggcgatgattcttactacaacttccaagatttc 2112 Query: 181 gtgaagcgcctgatcgatcccatcttcgataaaatcggtgtaaacgagattcccggcgag 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2113 gtgaagcgcctgatcgatcccatcttcgataaaatcggtgtaaacgagattcccggcgag 2172 Query: 241 cattatctgaacaactatctgcgcatcgtgctggtcagcttggcctgccaggtgggatcc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2173 cattatctgaacaactatctgcgcatcgtgctggtcagcttggcctgccaggtgggatcc 2232 Query: 301 gatgattgctataaccagtcggccaataaattatccgagtacctatacaatggcacagcc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2233 gatgattgctataaccagtcggccaataaattatccgagtacctatacaatggcacagcc 2292 Query: 361 attgaggccactctaaagactcaagcctactgtgctggtctccgatcgactaccaatgaa 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2293 attgaggccactctaaagactcaagcctactgtgctggtctccgatcgactaccaatgaa 2352 Query: 421 atctatagcagagtgcagtccgatttgctcagttcctcagattccaccgatcgcagcctg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2353 atctatagcagagtgcagtccgatttgctcagttcctcagattccaccgatcgcagcctg 2412 Query: 481 ttcatctcctcgttgggctgctctggaagtacgagccagctgcttgatttcttgagacta 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2413 ttcatctcctcgttgggctgctctggaagtacgagccagctgcttgatttcttgagacta 2472 Query: 541 tccctggacaccaacaatagcttgagctactcggagcgcacttcccttctaaactcggcc 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2473 tccctggacaccaacaatagcttgagctactcggagcgcacttcccttctaaactcggcc 2532 Query: 601 tattcccgcagtgaaatcggtcttaccgctagtttggaattcctggagagcaactgggag 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2533 tattcccgcagtgaaatcggtcttaccgctagtttggaattcctggagagcaactgggag 2592 Query: 661 gcatatgccaacctttcagactc 683 ||||||||||||||||||||||| Sbjct: 2593 gcatatgccaacctttcagactc 2615 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,048 Number of Sequences: 18737 Number of extensions: 16048 Number of successful extensions: 403 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 402 Number of HSP's gapped (non-prelim): 1 length of query: 683 length of database: 41,270,998 effective HSP length: 17 effective length of query: 666 effective length of database: 40,952,469 effective search space: 27274344354 effective search space used: 27274344354 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI389169|AI389169 GH20274.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH20274 5, mRNA sequence. (208 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CCR4-RD feature: mRNA loc=3R:complement(20013967..20015592,20015... 412 e-115 >CCR4-RD feature: mRNA loc=3R:complement(20013967..20015592,20015654..20015966, 20016262..20016330, 20016921..20017381);ID=FBan0031137;gene_id=FBgn0039168;g ene_sym=CCR4;sym=CG31137;scaffold=AE003746;len=2469 Length = 2469 Score = 412 bits (208), Expect = e-115 Identities = 208/208 (100%) Strand = Plus / Plus Query: 1 ccgcttcgtgttcatagcgtcagagaggagtccgaaccgctggccatcggagagattagg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ccgcttcgtgttcatagcgtcagagaggagtccgaaccgctggccatcggagagattagg 60 Query: 61 ttccacattcccactgccactgtatcgctgtatcgccgagcggtgcacccagttcgtttg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ttccacattcccactgccactgtatcgctgtatcgccgagcggtgcacccagttcgtttg 120 Query: 121 caagccgtggcgccctttgctgcggcacaatgttgtaagcaacggcccagtcacggctac 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 caagccgtggcgccctttgctgcggcacaatgttgtaagcaacggcccagtcacggctac 180 Query: 181 caattcgagaaacggtggcgcgggtgtg 208 |||||||||||||||||||||||||||| Sbjct: 181 caattcgagaaacggtggcgcgggtgtg 208 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4092 Number of Sequences: 18737 Number of extensions: 4092 Number of successful extensions: 271 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 270 Number of HSP's gapped (non-prelim): 1 length of query: 208 length of database: 41,270,998 effective HSP length: 16 effective length of query: 192 effective length of database: 40,971,206 effective search space: 7866471552 effective search space used: 7866471552 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI389231|AI389231 GH20356.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH20356 3prime, mRNA sequence. (352 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CR32657-RA feature: ncRNA loc=X:join(11817871..11817936,11818011... 678 0.0 >CR32657-RA feature: ncRNA loc=X:join(11817871..11817936,11818011..11818099, 11818158..11818355);ID=FBan0032657;gene_id=FBgn0052657;g ene_sym=CR32657;sym=CR32657;type=ncRNA;scaffold=AE003488 ;len=353 Length = 353 Score = 678 bits (342), Expect = 0.0 Identities = 342/342 (100%) Strand = Plus / Minus Query: 2 gatttaacaatattttatttttaatccatataagcgcacattaagccatataaacccata 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 353 gatttaacaatattttatttttaatccatataagcgcacattaagccatataaacccata 294 Query: 62 tatgatattagtatgtagtttttagccgatttgtgtatcacatgttagaatcgatgcaag 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 293 tatgatattagtatgtagtttttagccgatttgtgtatcacatgttagaatcgatgcaag 234 Query: 122 ctactcgtccaacgggaccggttccatcgattcgattgtattgtaattagtgtagtccag 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 233 ctactcgtccaacgggaccggttccatcgattcgattgtattgtaattagtgtagtccag 174 Query: 182 tcatggaattgtcaggtgttttttcgtgttgccggagctataaaaccacttgccattgct 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 173 tcatggaattgtcaggtgttttttcgtgttgccggagctataaaaccacttgccattgct 114 Query: 242 ttacaaaaagcaatggcgagtatttaagttatcaaaagggtgaaactcaattacacaata 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 113 ttacaaaaagcaatggcgagtatttaagttatcaaaagggtgaaactcaattacacaata 54 Query: 302 atttggaaatttttacattttttgttacgaaacgagttgtgc 343 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 53 atttggaaatttttacattttttgttacgaaacgagttgtgc 12 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7741 Number of Sequences: 18737 Number of extensions: 7741 Number of successful extensions: 667 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 666 Number of HSP's gapped (non-prelim): 1 length of query: 352 length of database: 41,270,998 effective HSP length: 17 effective length of query: 335 effective length of database: 40,952,469 effective search space: 13719077115 effective search space used: 13719077115 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI389333|AI389333 GH20473.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH20473 5prime, mRNA sequence. (593 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG9920-RA feature: mRNA loc=3R:complement(9923027..9923651,99237... 1114 0.0 >CG9920-RA feature: mRNA loc=3R:complement(9923027..9923651, 9923726..9923821);ID=FBan0009920;gene_id=FBgn0038200;gen e_sym=CG9920;sym=CG9920;scaffold=AE003703;len=721 Length = 721 Score = 1114 bits (562), Expect = 0.0 Identities = 583/593 (98%) Strand = Plus / Plus Query: 1 aacaacatcgttcttccaaaattnnnnnnnnnttatataataattataaaaagtgaaaaa 60 ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 13 aacaacatcgttcttccaaaattaaaaaaaaattatataataattataaaaagtgaaaaa 72 Query: 61 catagtaaaactctcacaaacaagaaacgatgtccaacgttattaagaaggtgattccca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 73 catagtaaaactctcacaaacaagaaacgatgtccaacgttattaagaaggtgattccca 132 Query: 121 tgctggaccgcattctaatccagcgtttcgaggtgaagaccaccaccgcgggcggcatcc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 133 tgctggaccgcattctaatccagcgtttcgaggtgaagaccaccaccgcgggcggcatcc 192 Query: 181 tgctgcccgaggagtcggtgcccaaggagatgcagggcgtggtggttgccgtcggacccg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 193 tgctgcccgaggagtcggtgcccaaggagatgcagggcgtggtggttgccgtcggacccg 252 Query: 241 gagcccgcaatcctgctggagctggacacttgtccgttggcgtcaaggagggcgatcgcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 253 gagcccgcaatcctgctggagctggacacttgtccgttggcgtcaaggagggcgatcgcg 312 Query: 301 tgctgttgcccaaatacggtggaactaaggtcgatatggacgacaagcgcgagtatgttc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 313 tgctgttgcccaaatacggtggaactaaggtcgatatggacgacaagcgcgagtatgttc 372 Query: 361 tgttccgcgagagcgatatccttgctaaactggaatagatttgcaacactttccgaaaca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 373 tgttccgcgagagcgatatccttgctaaactggaatagatttgcaacactttccgaaaca 432 Query: 421 tcaaagccgatatacacgatatacatataatgctccaagcaatactcatcctcctatctc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 433 tcaaagccgatatacacgatatacatataatgctccaagcaatactcatcctcctatctc 492 Query: 481 gtcacttatcttcggtggagactgtcattttgcttccgaattgcgttcgaaactaaatga 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 493 gtcacttatcttcggtggagactgtcattttgcttccgaattgcgttcgaaactaaatga 552 Query: 541 ttataatgaaatgttatatttgggaaatggccaatctacacactccacacact 593 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 553 ttataatgaaatgttatatttggtaaatggccaatctacacactccacacact 605 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,350 Number of Sequences: 18737 Number of extensions: 16350 Number of successful extensions: 394 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 392 Number of HSP's gapped (non-prelim): 2 length of query: 593 length of database: 41,270,998 effective HSP length: 17 effective length of query: 576 effective length of database: 40,952,469 effective search space: 23588622144 effective search space used: 23588622144 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI402299|AI402299 GH21304.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH21304 5prime, mRNA sequence. (566 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value rab3-GEF-RA feature: mRNA loc=X:join(14824267..14824389,14824570... 1051 0.0 >rab3-GEF-RA feature: mRNA loc=X:join(14824267..14824389,14824570..14824903, 14825128..14825627,14825681..14826042,14826101..14826258, 14828653..14829779,14829848..14830051,14830263..14830313, 14830827..14831196,14831257..14831642,14831704..14832186, 14832614..14832709,14833027..14833284,14833343..14833582, 14833647..14833919,14833991..14834158,14840711..14840783, 14840861..14840907, 14842082..14844776);ID=FBan0005627;gene_id=FBgn0030613;ge ne_sym=rab3-GEF;sym=CG5627;scaffold=AE003498;len=7948 Length = 7948 Score = 1051 bits (530), Expect = 0.0 Identities = 556/566 (98%), Gaps = 9/566 (1%) Strand = Plus / Plus Query: 1 cctccttggaaagagtcatattggcttggtgtactcccaggatgtgcacaatgtggtcga 60 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 4617 cctccttggaaagagtcatattggcttggtgtactcccaggaggtgcacaatgtggtcga 4676 Query: 61 tcagataaacaatctgaatggaaatgacattgatctaaagcccttgggttcacgattgct 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4677 tcagataaacaatctgaatggaaatgacattgatctaaagcccttgggttcacgattgct 4736 Query: 121 gcaccgccagagcttcaccgtccaccagggcacagatgtgaacggaccactacgatttat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4737 gcaccgccagagcttcaccgtccaccagggcacagatgtgaacggaccactacgatttat 4796 Query: 181 ggaggtgcgggacgatggtctggtactccgatcagtggatggcaccattgtggagcgctg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4797 ggaggtgcgggacgatggtctggtactccgatcagtggatggcaccattgtggagcgctg 4856 Query: 241 gtggtacgagcggctggtcaacatgacctattcacccaagaccaagctgctctgcctgtg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4857 gtggtacgagcggctggtcaacatgacctattcacccaagaccaagctgctctgcctgtg 4916 Query: 301 gcgccgcaatggcggtcagacgcaattgcacaaatactacacacgaaagtgcaaggagct 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4917 gcgccgcaatggcggtcagacgcaattgcacaaatactacacacgaaagtgcaaggagct 4976 Query: 361 gtacaattgcatcaaggaggccatggaacggggcggcacgcccaccaatgtacccgagct 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4977 gtacaattgcatcaaggaggccatggaacggggcggcacgcccaccaatgtacccgagct 5036 Query: 421 gggcggcgagtttcccgttcaggacatgaacacaggcgagggcggcctgctgcaggtgtg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5037 gggcggcgagtttcccgttcaggacatgaacacaggcgagggcggcctgctgcaggtgtg 5096 Query: 481 cctcgagggtgtcggtttgttgttctccaacagcaaggatttcgagtttttcgtccgatt 540 ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 5097 cctcgagggtgtcggtttgttgttctccaacagca---------agtttttcgtccgatt 5147 Query: 541 ggaccacatccgcaagtgcttcaccc 566 |||||||||||||||||||||||||| Sbjct: 5148 ggaccacatccgcaagtgcttcaccc 5173 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,668 Number of Sequences: 18737 Number of extensions: 15668 Number of successful extensions: 425 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 423 Number of HSP's gapped (non-prelim): 2 length of query: 566 length of database: 41,270,998 effective HSP length: 17 effective length of query: 549 effective length of database: 40,952,469 effective search space: 22482905481 effective search space used: 22482905481 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI402611|AI402611 GH21860.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH21860 5 similar to EG:4F1.1: FBan0014808 'cell adhesion' located on: X 1F4-1F4;: 04/10/2001, mRNA sequence. (549 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Scgdelta-RA feature: mRNA loc=X:complement(1503163..1503351,1503... 888 0.0 >Scgdelta-RA feature: mRNA loc=X:complement(1503163..1503351,1503459..1503582, 1504804..1505065,1506469..1506589,1506667..1507256, 1510488..1510811);ID=FBan0014808;gene_id=FBgn0025391;gen e_sym=Scgdelta;sym=CG14808;scaffold=AE003421;len=1610 Length = 1610 Score = 888 bits (448), Expect = 0.0 Identities = 468/478 (97%) Strand = Plus / Plus Query: 72 tgttccaagatttcccaattcaatagtttcgaaaaatcgttttcgagtgnnnnnnnnnng 131 ||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 72 tgttccaagatttcccaattcaatagtttcgaaaaatcgttttcgagtgttttttttttg 131 Query: 132 tctgtgctttctggttttcgctgcctgctgagccatctgactagcgcgcctcccgttcat 191 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 132 tctgtgctttctggttttcgctgcctgctgagccatctgactagcgcgcctcccgttcat 191 Query: 192 ggctggcgtttggaattgtgaaggtcagcgcgtcgtcgcgatcggactcccatttcagtg 251 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 192 ggctggcgtttggaattgtgaaggtcagcgcgtcgtcgcgatcggactcccatttcagtg 251 Query: 252 tgtgtcgtaatccggccaagagatcgcgtttgtaaaagatacgaaatctgtttgctcaag 311 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 252 tgtgtcgtaatccggccaagagatcgcgtttgtaaaagatacgaaatctgtttgctcaag 311 Query: 312 acatagtgtaagagatacaggatacgcaaccggagagtcatgcacttcccatgcatccac 371 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 312 acatagtgtaagagatacaggatacgcaaccggagagtcatgcacttcccatgcatccac 371 Query: 372 tagctgcagtgcagcagcgccggaatgttggccgctggcagcagtgagatcactgacttt 431 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 372 tagctgcagtgcagcagcgccggaatgttggccgctggcagcagtgagatcactgacttt 431 Query: 432 gggccacactcgcgccaactaacggctggcaacacgcccaagcgacccaacaaggccagc 491 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 432 gggccacactcgcgccaactaacggctggcaacacgcccaagcgacccaacaaggccagc 491 Query: 492 agccaccgtcctggttctggttctggtcctggcccaatgacaactggtggcaccagct 549 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 492 agccaccgtcctggttctggttctggtcctggcccaatgacaactggtggcaccagct 549 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,408 Number of Sequences: 18737 Number of extensions: 12408 Number of successful extensions: 349 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 346 Number of HSP's gapped (non-prelim): 3 length of query: 549 length of database: 41,270,998 effective HSP length: 17 effective length of query: 532 effective length of database: 40,952,469 effective search space: 21786713508 effective search space used: 21786713508 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI403135|AI403135 GH22513.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH22513 5prime, mRNA sequence. (684 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31740-RA feature: mRNA loc=2L:join(17987011..17987181,17987318... 1033 0.0 >CG31740-RA feature: mRNA loc=2L:join(17987011..17987181, 17987318..17987785);ID=FBan0031740;gene_id=FBgn0051740;g ene_sym=CG31740;sym=CG31740;scaffold=AE003657;len=639 Length = 639 Score = 1033 bits (521), Expect = 0.0 Identities = 537/545 (98%) Strand = Plus / Plus Query: 40 caatatgaaaaattgaacaaaaattctaaattcgtagccaaggattaacttcaacgtatt 99 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 87 caatatgaaaaattgaacaaaaattctaaattcgtagccaaggattaacttcaacgtatt 146 Query: 100 tcttcagcaggnnnnnnnntcccagccgtaccttttgagcccctcctgcagattttagaa 159 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 147 tcttcagcaggaaaaaaaatcccagccgtaccttttgagcccctcctgcagattttagaa 206 Query: 160 gagattccagtgtcctttaccaaatccaaactttcaagatggttctgatgctttgctgca 219 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 207 gagattccagtgtcctttaccaaatccaaactttcaagatggttctgatgctttgctgca 266 Query: 220 gcttcgatcccttctacgttggaccctgcccacccggctgcctggctcctttgatgggag 279 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 267 gcttcgatcccttctacgttggaccctgcccacccggctgcctggctcctttgatgggag 326 Query: 280 gaactccctattgcggatgtggtccctgtggaggttgctgtagtccttgctgtggtccat 339 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 327 gaactccctattgcggatgtggtccctgtggaggttgctgtagtccttgctgtggtccat 386 Query: 340 gtggtccttgtggtggctgcagctcgtgtccttgcggctggtgaagcgcccgctatcata 399 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 387 gtggtccttgtggtggctgcagctcgtgtccttgcggctggtgaagcgcccgctatcata 446 Query: 400 ggcattaatacggcagcaagcggtaacaagtcaatttaaagatcaaccttctggaaaaga 459 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 447 ggcattaatacggcagcaagcggtaacaagtcaatttaaagatcaaccttctggaaaaga 506 Query: 460 ctgctggagaaatatgttgctgttcgaattcctttttgccttggccggggctaaaccaac 519 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 507 ctgctggagaaatatgttgctgttcgaattcctttttgccttggccggggctaaaccaac 566 Query: 520 taagctctcgtatacataaagaatttttattataagctgttcagtaataaaatgaattaa 579 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 567 taagctctcgtatacataaagaatttttattataagctgttcagtaataaaatgaattaa 626 Query: 580 agtac 584 ||||| Sbjct: 627 agtac 631 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,311 Number of Sequences: 18737 Number of extensions: 15311 Number of successful extensions: 343 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 340 Number of HSP's gapped (non-prelim): 3 length of query: 684 length of database: 41,270,998 effective HSP length: 17 effective length of query: 667 effective length of database: 40,952,469 effective search space: 27315296823 effective search space used: 27315296823 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI403150|AI403150 GH22533.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH22533 5prime, mRNA sequence. (550 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG8069-RA feature: mRNA loc=2R:join(4175010..4175139,4175198..41... 1035 0.0 CG8069-RB feature: mRNA loc=2R:join(4175022..4175930,4175986..41... 944 0.0 >CG8069-RA feature: mRNA loc=2R:join(4175010..4175139,4175198..4175930, 4175986..4176077,4176131..4176407, 4176466..4176784);ID=FBan0008069;gene_id=FBgn0033380;gen e_sym=CG8069;sym=CG8069;scaffold=AE003834;len=1551 Length = 1551 Score = 1035 bits (522), Expect = 0.0 Identities = 541/550 (98%) Strand = Plus / Plus Query: 1 attttctctcgactcgccatnnnnnnnntgatggaactgcacgcaaatgacgttgacctg 60 |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 59 attttctctcgactcgccataaaaaaaatgatggaactgcacgcaaatgacgttgacctg 118 Query: 61 gaggacggcgagctatcggagagcgacgatgatggcgtttacacgccgttgcagcgacct 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 119 gaggacggcgagctatcggagagcgacgatgatggcgtttacacgccgttgcagcgacct 178 Query: 121 gacggtgcggagaaggtggccagtccccttaccacctgccatcagatccagactgcgtta 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 179 gacggtgcggagaaggtggccagtccccttaccacctgccatcagatccagactgcgtta 238 Query: 181 gaggacgagtcacaaagcaacagcgactcctcgactgccgaatcctccgaggacgggtgc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 239 gaggacgagtcacaaagcaacagcgactcctcgactgccgaatcctccgaggacgggtgc 298 Query: 241 atcaagaagcttcgtacggaatccaccggacccgacggccacaagaagcggaaaaagcgc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 299 atcaagaagcttcgtacggaatccaccggacccgacggccacaagaagcggaaaaagcgc 358 Query: 301 attcggcgcacggtaatgcggcgcgttccgcccacggatgctgaaatgcaaccgaatcga 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 359 attcggcgcacggtaatgcggcgcgttccgcccacggatgctgaaatgcaaccgaatcga 418 Query: 361 gcccgtttcaagaagtacaacgtgtgggcttctgccctgcaagaggatgcgctcagcgag 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 419 gcccgtttcaagaagtacaacgtgtgggcttctgccctgcaagaggatgcgctcagcgag 478 Query: 421 aatatgcgtggctgctacgttacccgaagcggtcgggatcgaaatgttgaaaactacgac 480 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 479 aatatgcgtggctgcgacgttacccgaagcggtcgggatcgaaatgttgaaaactacgac 538 Query: 481 ttctcattgcgataccggctgaacggcgagaacactctaaagcgacgactctcaaactct 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 539 ttctcattgcgataccggctgaacggcgagaacactctaaagcgacgactctcaaactct 598 Query: 541 tcggaggacg 550 |||||||||| Sbjct: 599 tcggaggacg 608 >CG8069-RB feature: mRNA loc=2R:join(4175022..4175930,4175986..4176077, 4176131..4176407, 4176466..4176784);ID=FBan0008069;gene_id=FBgn0033380;gen e_sym=CG8069;sym=CG8069;scaffold=AE003834;len=1597 Length = 1597 Score = 944 bits (476), Expect = 0.0 Identities = 479/480 (99%) Strand = Plus / Plus Query: 71 agctatcggagagcgacgatgatggcgtttacacgccgttgcagcgacctgacggtgcgg 130 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 175 agctatcggagagcgacgatgatggcgtttacacgccgttgcagcgacctgacggtgcgg 234 Query: 131 agaaggtggccagtccccttaccacctgccatcagatccagactgcgttagaggacgagt 190 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 235 agaaggtggccagtccccttaccacctgccatcagatccagactgcgttagaggacgagt 294 Query: 191 cacaaagcaacagcgactcctcgactgccgaatcctccgaggacgggtgcatcaagaagc 250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 295 cacaaagcaacagcgactcctcgactgccgaatcctccgaggacgggtgcatcaagaagc 354 Query: 251 ttcgtacggaatccaccggacccgacggccacaagaagcggaaaaagcgcattcggcgca 310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 355 ttcgtacggaatccaccggacccgacggccacaagaagcggaaaaagcgcattcggcgca 414 Query: 311 cggtaatgcggcgcgttccgcccacggatgctgaaatgcaaccgaatcgagcccgtttca 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 415 cggtaatgcggcgcgttccgcccacggatgctgaaatgcaaccgaatcgagcccgtttca 474 Query: 371 agaagtacaacgtgtgggcttctgccctgcaagaggatgcgctcagcgagaatatgcgtg 430 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 475 agaagtacaacgtgtgggcttctgccctgcaagaggatgcgctcagcgagaatatgcgtg 534 Query: 431 gctgctacgttacccgaagcggtcgggatcgaaatgttgaaaactacgacttctcattgc 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 535 gctgcgacgttacccgaagcggtcgggatcgaaatgttgaaaactacgacttctcattgc 594 Query: 491 gataccggctgaacggcgagaacactctaaagcgacgactctcaaactcttcggaggacg 550 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 595 gataccggctgaacggcgagaacactctaaagcgacgactctcaaactcttcggaggacg 654 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,961 Number of Sequences: 18737 Number of extensions: 10961 Number of successful extensions: 226 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 221 Number of HSP's gapped (non-prelim): 5 length of query: 550 length of database: 41,270,998 effective HSP length: 17 effective length of query: 533 effective length of database: 40,952,469 effective search space: 21827665977 effective search space used: 21827665977 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI403160|AI403160 GH22543.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH22543 5prime similar to D89663: Fruitfly mRNA for myosin light chain kinase isoform-II, partial cds, mRNA sequence. (687 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Strn-Mlck-RF feature: mRNA loc=2R:complement(11010650..11011331,... 1352 0.0 Strn-Mlck-RC feature: mRNA loc=2R:complement(11010650..11011331,... 1352 0.0 Strn-Mlck-RB feature: mRNA loc=2R:complement(11010650..11011331,... 1352 0.0 Strn-Mlck-RA feature: mRNA loc=2R:complement(11010650..11011331,... 1352 0.0 Strn-Mlck-RG feature: mRNA loc=2R:complement(11010650..11011331,... 928 0.0 >Strn-Mlck-RF feature: mRNA loc=2R:complement(11010650..11011331,11011730..11012435, 11012533..11012710,11012766..11012867,11012929..11013270, 11013331..11013849,11013916..11014190,11014883..11015191, 11016561..11016945,11017151..11017562,11017627..11018498, 11018558..11019019);ID=FBan0018255;gene_id=FBgn0013988;ge ne_sym=Strn-Mlck;sym=CG18255;scaffold=AE003808;len=5244 Length = 5244 Score = 1352 bits (682), Expect = 0.0 Identities = 685/686 (99%) Strand = Plus / Plus Query: 1 cccaggcggagttccgtcgaattccgaccacacgcacctacaccagcctcctggtactgc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2226 cccaggcggagttccgtcgaattccgaccacacgcacctacaccagcctcctggtactgc 2285 Query: 61 ccgccatccgtggcaacagctccagttcctcgctggcggccagaagctgcattttgacac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2286 ccgccatccgtggcaacagctccagttcctcgctggcggccagaagctgcattttgacac 2345 Query: 121 gccccgaggactgcaccgccttgatcggtggacatgttcggctgagcgttcgctacgagc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2346 gccccgaggactgcaccgccttgatcggtggacatgttcggctgagcgttcgctacgagc 2405 Query: 181 cattcccgggcaccaaagtcatctggtacaaggcgtgtcatcccattgtggaaagctcca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2406 cattcccgggcaccaaagtcatctggtacaaggcgtgtcatcccattgtggaaagctcca 2465 Query: 241 atgtgacgatccggacgacgagccaacagtcgacgctctacatcacggacatctcggcgg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2466 atgtgacgatccggacgacgagccaacagtcgacgctctacatcacggacatctcggcgg 2525 Query: 301 acgacagcggcaagtatacggttgaggtgatgaacgactatggcgtggaggcagccgctg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2526 acgacagcggcaagtatacggttgaggtgatgaacgactatggcgtggaggcagccgctg 2585 Query: 361 cctcggtggcagtggaaggtcctccggagccaccaagtggccagcccagtgtatcgctgg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2586 cctcggtggcagtggaaggtcctccggagccaccaagtggccagcccagtgtatcgctgg 2645 Query: 421 gtccagatcgcgtggcagtggcctggtgtggtccaccctacgacggtggctgtatgatca 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2646 gtccagatcgcgtggcagtggcctggtgtggtccaccctacgacggtggctgtatgatca 2705 Query: 481 caggttttatcattgagatgcagaccattggcgatgagaactgcgatgaggacagctggc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2706 caggttttatcattgagatgcagaccattggcgatgagaactgcgatgaggacagctggc 2765 Query: 541 agcaggttacccgagtggtggacagcttagcgtacaccgtcaaaaacctccagccggaga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2766 agcaggttacccgagtggtggacagcttagcgtacaccgtcaaaaacctccagccggaga 2825 Query: 601 ggcagtaccgattcagagtgcgtgccgagaatatccatggacgcagtgcacccggccagg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2826 ggcagtaccgattcagagtgcgtgccgagaatatccatggacgcagtgcacccggccagg 2885 Query: 661 ccagcgaactggtacagaataccaat 686 |||||||||||||||||| ||||||| Sbjct: 2886 ccagcgaactggtacagattaccaat 2911 >Strn-Mlck-RC feature: mRNA loc=2R:complement(11010650..11011331,11011730..11012435, 11012533..11012710,11012766..11012867,11012929..11013270, 11013331..11013849,11013916..11014190,11014883..11015191, 11016561..11016945,11017151..11017562,11017627..11018498, 11018558..11018603,11020364..11020532,11021534..11021666, 11021719..11023042,11023514..11023601,11023970..11024142, 11024206..11024913,11025038..11025781,11025842..11026552, 11026762..11028381,11028537..11029295,11029473..11030255, 11030319..11032025);ID=FBan0018255;gene_id=FBgn0013988;gen e_sym=Strn-Mlck;sym=CG18255;scaffold=AE003808;len=13747 Length = 13747 Score = 1352 bits (682), Expect = 0.0 Identities = 685/686 (99%) Strand = Plus / Plus Query: 1 cccaggcggagttccgtcgaattccgaccacacgcacctacaccagcctcctggtactgc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10729 cccaggcggagttccgtcgaattccgaccacacgcacctacaccagcctcctggtactgc 10788 Query: 61 ccgccatccgtggcaacagctccagttcctcgctggcggccagaagctgcattttgacac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10789 ccgccatccgtggcaacagctccagttcctcgctggcggccagaagctgcattttgacac 10848 Query: 121 gccccgaggactgcaccgccttgatcggtggacatgttcggctgagcgttcgctacgagc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10849 gccccgaggactgcaccgccttgatcggtggacatgttcggctgagcgttcgctacgagc 10908 Query: 181 cattcccgggcaccaaagtcatctggtacaaggcgtgtcatcccattgtggaaagctcca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10909 cattcccgggcaccaaagtcatctggtacaaggcgtgtcatcccattgtggaaagctcca 10968 Query: 241 atgtgacgatccggacgacgagccaacagtcgacgctctacatcacggacatctcggcgg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10969 atgtgacgatccggacgacgagccaacagtcgacgctctacatcacggacatctcggcgg 11028 Query: 301 acgacagcggcaagtatacggttgaggtgatgaacgactatggcgtggaggcagccgctg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11029 acgacagcggcaagtatacggttgaggtgatgaacgactatggcgtggaggcagccgctg 11088 Query: 361 cctcggtggcagtggaaggtcctccggagccaccaagtggccagcccagtgtatcgctgg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11089 cctcggtggcagtggaaggtcctccggagccaccaagtggccagcccagtgtatcgctgg 11148 Query: 421 gtccagatcgcgtggcagtggcctggtgtggtccaccctacgacggtggctgtatgatca 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11149 gtccagatcgcgtggcagtggcctggtgtggtccaccctacgacggtggctgtatgatca 11208 Query: 481 caggttttatcattgagatgcagaccattggcgatgagaactgcgatgaggacagctggc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11209 caggttttatcattgagatgcagaccattggcgatgagaactgcgatgaggacagctggc 11268 Query: 541 agcaggttacccgagtggtggacagcttagcgtacaccgtcaaaaacctccagccggaga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11269 agcaggttacccgagtggtggacagcttagcgtacaccgtcaaaaacctccagccggaga 11328 Query: 601 ggcagtaccgattcagagtgcgtgccgagaatatccatggacgcagtgcacccggccagg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11329 ggcagtaccgattcagagtgcgtgccgagaatatccatggacgcagtgcacccggccagg 11388 Query: 661 ccagcgaactggtacagaataccaat 686 |||||||||||||||||| ||||||| Sbjct: 11389 ccagcgaactggtacagattaccaat 11414 >Strn-Mlck-RB feature: mRNA loc=2R:complement(11010650..11011331,11011730..11012435, 11012533..11012710,11012766..11012867, 11012929..11013270,11013331..11013849, 11013916..11014190,11014883..11015191, 11016073..11016243);ID=FBan0018255;gene_id=FBgn0013988;g ene_sym=Strn-Mlck;sym=CG18255;scaffold=AE003808;len=3284 Length = 3284 Score = 1352 bits (682), Expect = 0.0 Identities = 685/686 (99%) Strand = Plus / Plus Query: 1 cccaggcggagttccgtcgaattccgaccacacgcacctacaccagcctcctggtactgc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 266 cccaggcggagttccgtcgaattccgaccacacgcacctacaccagcctcctggtactgc 325 Query: 61 ccgccatccgtggcaacagctccagttcctcgctggcggccagaagctgcattttgacac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 326 ccgccatccgtggcaacagctccagttcctcgctggcggccagaagctgcattttgacac 385 Query: 121 gccccgaggactgcaccgccttgatcggtggacatgttcggctgagcgttcgctacgagc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 386 gccccgaggactgcaccgccttgatcggtggacatgttcggctgagcgttcgctacgagc 445 Query: 181 cattcccgggcaccaaagtcatctggtacaaggcgtgtcatcccattgtggaaagctcca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 446 cattcccgggcaccaaagtcatctggtacaaggcgtgtcatcccattgtggaaagctcca 505 Query: 241 atgtgacgatccggacgacgagccaacagtcgacgctctacatcacggacatctcggcgg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 506 atgtgacgatccggacgacgagccaacagtcgacgctctacatcacggacatctcggcgg 565 Query: 301 acgacagcggcaagtatacggttgaggtgatgaacgactatggcgtggaggcagccgctg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 566 acgacagcggcaagtatacggttgaggtgatgaacgactatggcgtggaggcagccgctg 625 Query: 361 cctcggtggcagtggaaggtcctccggagccaccaagtggccagcccagtgtatcgctgg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 626 cctcggtggcagtggaaggtcctccggagccaccaagtggccagcccagtgtatcgctgg 685 Query: 421 gtccagatcgcgtggcagtggcctggtgtggtccaccctacgacggtggctgtatgatca 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 686 gtccagatcgcgtggcagtggcctggtgtggtccaccctacgacggtggctgtatgatca 745 Query: 481 caggttttatcattgagatgcagaccattggcgatgagaactgcgatgaggacagctggc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 746 caggttttatcattgagatgcagaccattggcgatgagaactgcgatgaggacagctggc 805 Query: 541 agcaggttacccgagtggtggacagcttagcgtacaccgtcaaaaacctccagccggaga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 806 agcaggttacccgagtggtggacagcttagcgtacaccgtcaaaaacctccagccggaga 865 Query: 601 ggcagtaccgattcagagtgcgtgccgagaatatccatggacgcagtgcacccggccagg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 866 ggcagtaccgattcagagtgcgtgccgagaatatccatggacgcagtgcacccggccagg 925 Query: 661 ccagcgaactggtacagaataccaat 686 |||||||||||||||||| ||||||| Sbjct: 926 ccagcgaactggtacagattaccaat 951 >Strn-Mlck-RA feature: mRNA loc=2R:complement(11010650..11011331,11011730..11012435, 11012533..11012710,11012766..11012867,11012929..11013270, 11013331..11013849,11013916..11014190,11014883..11015191, 11016561..11016945,11017151..11017562,11017627..11018498, 11018558..11018603,11020364..11020532,11021534..11021666, 11021719..11023042,11023514..11023601,11023970..11024142, 11024206..11024913,11025038..11025781,11025842..11026552, 11026762..11028381,11028537..11029295,11029473..11030255, 11032801..11047731,11047799..11048011,11048379..11048470, 11048608..11049092,11049199..11049490, 11049587..11049678);ID=FBan0018255;gene_id=FBgn0013988;gen e_sym=Strn-Mlck;sym=CG18255;scaffold=AE003808;len=28145 Length = 28145 Score = 1352 bits (682), Expect = 0.0 Identities = 685/686 (99%) Strand = Plus / Plus Query: 1 cccaggcggagttccgtcgaattccgaccacacgcacctacaccagcctcctggtactgc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 25127 cccaggcggagttccgtcgaattccgaccacacgcacctacaccagcctcctggtactgc 25186 Query: 61 ccgccatccgtggcaacagctccagttcctcgctggcggccagaagctgcattttgacac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 25187 ccgccatccgtggcaacagctccagttcctcgctggcggccagaagctgcattttgacac 25246 Query: 121 gccccgaggactgcaccgccttgatcggtggacatgttcggctgagcgttcgctacgagc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 25247 gccccgaggactgcaccgccttgatcggtggacatgttcggctgagcgttcgctacgagc 25306 Query: 181 cattcccgggcaccaaagtcatctggtacaaggcgtgtcatcccattgtggaaagctcca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 25307 cattcccgggcaccaaagtcatctggtacaaggcgtgtcatcccattgtggaaagctcca 25366 Query: 241 atgtgacgatccggacgacgagccaacagtcgacgctctacatcacggacatctcggcgg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 25367 atgtgacgatccggacgacgagccaacagtcgacgctctacatcacggacatctcggcgg 25426 Query: 301 acgacagcggcaagtatacggttgaggtgatgaacgactatggcgtggaggcagccgctg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 25427 acgacagcggcaagtatacggttgaggtgatgaacgactatggcgtggaggcagccgctg 25486 Query: 361 cctcggtggcagtggaaggtcctccggagccaccaagtggccagcccagtgtatcgctgg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 25487 cctcggtggcagtggaaggtcctccggagccaccaagtggccagcccagtgtatcgctgg 25546 Query: 421 gtccagatcgcgtggcagtggcctggtgtggtccaccctacgacggtggctgtatgatca 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 25547 gtccagatcgcgtggcagtggcctggtgtggtccaccctacgacggtggctgtatgatca 25606 Query: 481 caggttttatcattgagatgcagaccattggcgatgagaactgcgatgaggacagctggc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 25607 caggttttatcattgagatgcagaccattggcgatgagaactgcgatgaggacagctggc 25666 Query: 541 agcaggttacccgagtggtggacagcttagcgtacaccgtcaaaaacctccagccggaga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 25667 agcaggttacccgagtggtggacagcttagcgtacaccgtcaaaaacctccagccggaga 25726 Query: 601 ggcagtaccgattcagagtgcgtgccgagaatatccatggacgcagtgcacccggccagg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 25727 ggcagtaccgattcagagtgcgtgccgagaatatccatggacgcagtgcacccggccagg 25786 Query: 661 ccagcgaactggtacagaataccaat 686 |||||||||||||||||| ||||||| Sbjct: 25787 ccagcgaactggtacagattaccaat 25812 >Strn-Mlck-RG feature: mRNA loc=2R:complement(11010650..11011331,11011730..11012435, 11012533..11012710,11012766..11012867,11012929..11013270, 11013331..11013849,11013916..11014190, 11014333..11014873);ID=FBan0018255;gene_id=FBgn0013988;ge ne_sym=Strn-Mlck;sym=CG18255;scaffold=AE003808;len=3345 Length = 3345 Score = 928 bits (468), Expect = 0.0 Identities = 471/472 (99%) Strand = Plus / Plus Query: 215 gtgtcatcccattgtggaaagctccaatgtgacgatccggacgacgagccaacagtcgac 274 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 gtgtcatcccattgtggaaagctccaatgtgacgatccggacgacgagccaacagtcgac 600 Query: 275 gctctacatcacggacatctcggcggacgacagcggcaagtatacggttgaggtgatgaa 334 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 601 gctctacatcacggacatctcggcggacgacagcggcaagtatacggttgaggtgatgaa 660 Query: 335 cgactatggcgtggaggcagccgctgcctcggtggcagtggaaggtcctccggagccacc 394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 661 cgactatggcgtggaggcagccgctgcctcggtggcagtggaaggtcctccggagccacc 720 Query: 395 aagtggccagcccagtgtatcgctgggtccagatcgcgtggcagtggcctggtgtggtcc 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 721 aagtggccagcccagtgtatcgctgggtccagatcgcgtggcagtggcctggtgtggtcc 780 Query: 455 accctacgacggtggctgtatgatcacaggttttatcattgagatgcagaccattggcga 514 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 781 accctacgacggtggctgtatgatcacaggttttatcattgagatgcagaccattggcga 840 Query: 515 tgagaactgcgatgaggacagctggcagcaggttacccgagtggtggacagcttagcgta 574 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 841 tgagaactgcgatgaggacagctggcagcaggttacccgagtggtggacagcttagcgta 900 Query: 575 caccgtcaaaaacctccagccggagaggcagtaccgattcagagtgcgtgccgagaatat 634 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 901 caccgtcaaaaacctccagccggagaggcagtaccgattcagagtgcgtgccgagaatat 960 Query: 635 ccatggacgcagtgcacccggccaggccagcgaactggtacagaataccaat 686 |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 961 ccatggacgcagtgcacccggccaggccagcgaactggtacagattaccaat 1012 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 17,547 Number of Sequences: 18737 Number of extensions: 17547 Number of successful extensions: 386 Number of sequences better than 1.0e-100: 5 Number of HSP's better than 0.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 379 Number of HSP's gapped (non-prelim): 7 length of query: 687 length of database: 41,270,998 effective HSP length: 17 effective length of query: 670 effective length of database: 40,952,469 effective search space: 27438154230 effective search space used: 27438154230 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI403373|AI403373 GH22794.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH22794 5 similar to CG10311: FBan0010311 located on: 3R 89B22-89B22;: 04/10/2001, mRNA sequence. (849 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG10311-RA feature: mRNA loc=3R:complement(12176645..12176970,12... 1667 0.0 >CG10311-RA feature: mRNA loc=3R:complement(12176645..12176970,12177618..12177771, 12177829..12178099, 12182540..12182751);ID=FBan0010311;gene_id=FBgn0038420;g ene_sym=CG10311;sym=CG10311;scaffold=AE003713;len=963 Length = 963 Score = 1667 bits (841), Expect = 0.0 Identities = 847/849 (99%) Strand = Plus / Plus Query: 1 ccgtcgcactcacatcgaaatcgcgcgcaagtcgtcggatccaaatcgcctcgaaacgct 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 17 ccgtcgcactcacatcgaaatcgcgcgcaagtcgtcggatccaaatcgcctcgaaacgct 76 Query: 61 acgcacttggaggaggcaaatatcaaatatatgagaataattagttaggaggcagccgaa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77 acgcacttggaggaggcaaatatcaaatatatgagaataattagttaggaggcagccgaa 136 Query: 121 tcagcggaatcaaatcgatttccctcgactgcatttagcagtgctgcaccatcaaatcaa 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 137 tcagcggaatcaaatcgatttccctcgactgcatttagcagtgctgcaccatcaaatcaa 196 Query: 181 aaataaattagaaagtctggtaatcacaatatagatttgccaaaatgccgaagccactgt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 197 aaataaattagaaagtctggtaatcacaatatagatttgccaaaatgccgaagccactgt 256 Query: 241 taaattcgtgctgtctgtgccaatcgacccggaatggctccgttatctcgggcatactgg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 257 taaattcgtgctgtctgtgccaatcgacccggaatggctccgttatctcgggcatactgg 316 Query: 301 cgatagtcctgtcgatcatcaccatcgtggtgatcttcacgacgcgggtgcacttcaaga 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 317 cgatagtcctgtcgatcatcaccatcgtggtgatcttcacgacgcgggtgcacttcaaga 376 Query: 361 cgataatctttgacttcatccccaatgacattgttaagataattctagtcatcaatttgt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 377 cgataatctttgacttcatccccaatgacattgttaagataattctagtcatcaatttgt 436 Query: 421 gcatgacgatcttgatatcgctgctcatgatcattggtgccctgaagcggaaccactacc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 437 gcatgacgatcttgatatcgctgctcatgatcattggtgccctgaagcggaaccactacc 496 Query: 481 tgatggttccatgggtggtcctcggcattatgattgccatcggtctgctgatctccgtca 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 497 tgatggttccatgggtggtcctcggcattatgattgccatcggtctgctgatctccgtca 556 Query: 541 tctacacgggcatcgtcttcttcatcgacggctacgtgctgacgggagtcctctggctga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 557 tctacacgggcatcgtcttcttcatcgacggctacgtgctgacgggagtcctctggctga 616 Query: 601 tcttcggcctaattgtctgcgcgattatgacctattgctggtgcgtggtctatagtgaat 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 617 tcttcggcctaattgtctgcgcgattatgacctattgctggtgcgtggtctatagtgaat 676 Query: 661 acgccaacctgtccgaggagaacgagcgcggtcgttacaacaagcagccgtaccgtcgct 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 677 acgccaacctgtccgaggagaacgagcgcggtcgttacaacaagcagccgtaccgtcgct 736 Query: 721 agaatctccaggggcactattcatcagaaattgcattcaagaagctgaatccaccaccca 780 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 737 agaatctccaggagcactattcatcagaaattgcattcaagaagctgaatccaccaccca 796 Query: 781 cacatcttcatcctagcttcctatgttcgtttttagtgattatgtctaactaataattat 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 797 cacatcttcatcctagcttcctatgttcgtttttagtgattatgtctaactaataattat 856 Query: 841 aagttagtt 849 || |||||| Sbjct: 857 aatttagtt 865 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 19,281 Number of Sequences: 18737 Number of extensions: 19281 Number of successful extensions: 468 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 467 Number of HSP's gapped (non-prelim): 1 length of query: 849 length of database: 41,270,998 effective HSP length: 17 effective length of query: 832 effective length of database: 40,952,469 effective search space: 34072454208 effective search space used: 34072454208 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI403422|AI403422 GH22856.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH22856 5 similar to CG9485: FBan0009485 'enzyme' located on: 2R 57D4-57D5;: 04/10/2001, mRNA sequence. (718 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG9485-RC feature: mRNA loc=2R:join(16357449..16357530,16357975.... 1415 0.0 CG9485-RB feature: mRNA loc=2R:join(16356972..16357267,16357975.... 1415 0.0 CG9485-RA feature: mRNA loc=2R:join(16356231..16356334,16357975.... 1415 0.0 >CG9485-RC feature: mRNA loc=2R:join(16357449..16357530,16357975..16358315, 16358379..16358736,16358787..16360190,16360248..16361103, 16361160..16361337,16361398..16361567, 16361632..16363120);ID=FBan0009485;gene_id=FBgn0034618;ge ne_sym=CG9485;sym=CG9485;scaffold=AE003453;len=4878 Length = 4878 Score = 1415 bits (714), Expect = 0.0 Identities = 717/718 (99%) Strand = Plus / Plus Query: 1 gtcagacccttcgacacggactcattccgaatcttttggacagcggcagcaagccgagat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3492 gtcagacccttcgacacggactcattccgaatcttttggacagcggcagcaagccgagat 3551 Query: 61 tcaactgccgcgatgctatctggtggtggatgtactgcatcaagcagtatgtggaggatg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3552 tcaactgccgcgatgctatctggtggtggatgtactgcatcaagcagtatgtggaggatg 3611 Query: 121 cccccaagggtgccgagatcctgaaggacaaggtgtcccgcatatttccgtacgacgatg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3612 cccccaagggtgccgagatcctgaaggacaaggtgtcccgcatatttccgtacgacgatg 3671 Query: 181 ccgatgcccatgctccaggtgccttcgaccaacttctcttcgacgtgatgcaggaggcac 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3672 ccgatgcccatgctccaggtgccttcgaccaacttctcttcgacgtgatgcaggaggcac 3731 Query: 241 tgcaggtgcattttcagggcttgcagtatagggggcgcaatgcaggctatgagatcgatg 300 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 3732 tgcaggtgcattttcagggcttgcagtatagggagcgcaatgcaggctatgagatcgatg 3791 Query: 301 cgcacatggtggaccagggctttaacaatcagatcggaattcacccggagactggctttg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3792 cgcacatggtggaccagggctttaacaatcagatcggaattcacccggagactggctttg 3851 Query: 361 tattcggaggcaataacttcaactgcggcacttggatggacaaaatgggatcctcacaga 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3852 tattcggaggcaataacttcaactgcggcacttggatggacaaaatgggatcctcacaga 3911 Query: 421 aggccggaaacaagggacgtccaagtacgccgcgcgacggatcagccgtggagctcgttg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3912 aggccggaaacaagggacgtccaagtacgccgcgcgacggatcagccgtggagctcgttg 3971 Query: 481 gcctccagtatgccgtactccggtttatgcaaagcctagccgaaaaggaggttatcccgt 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3972 gcctccagtatgccgtactccggtttatgcaaagcctagccgaaaaggaggttatcccgt 4031 Query: 541 acaccggcgtggaacgaaagggtccatcgggcgaagtgaccaagtggagctacaaggagt 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4032 acaccggcgtggaacgaaagggtccatcgggcgaagtgaccaagtggagctacaaggagt 4091 Query: 601 gggcggatcgcatcaagaacaactttgacaagtatttctttgtatccgaatcggaaacct 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4092 gggcggatcgcatcaagaacaactttgacaagtatttctttgtatccgaatcggaaacct 4151 Query: 661 gctcggtggccaacaagaagcttatctacaaggacagctatggagccacccagagttg 718 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4152 gctcggtggccaacaagaagcttatctacaaggacagctatggagccacccagagttg 4209 >CG9485-RB feature: mRNA loc=2R:join(16356972..16357267,16357975..16358315, 16358379..16358736,16358787..16360190,16360248..16361103, 16361160..16361337,16361398..16361567, 16361632..16363120);ID=FBan0009485;gene_id=FBgn0034618;ge ne_sym=CG9485;sym=CG9485;scaffold=AE003453;len=5092 Length = 5092 Score = 1415 bits (714), Expect = 0.0 Identities = 717/718 (99%) Strand = Plus / Plus Query: 1 gtcagacccttcgacacggactcattccgaatcttttggacagcggcagcaagccgagat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3706 gtcagacccttcgacacggactcattccgaatcttttggacagcggcagcaagccgagat 3765 Query: 61 tcaactgccgcgatgctatctggtggtggatgtactgcatcaagcagtatgtggaggatg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3766 tcaactgccgcgatgctatctggtggtggatgtactgcatcaagcagtatgtggaggatg 3825 Query: 121 cccccaagggtgccgagatcctgaaggacaaggtgtcccgcatatttccgtacgacgatg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3826 cccccaagggtgccgagatcctgaaggacaaggtgtcccgcatatttccgtacgacgatg 3885 Query: 181 ccgatgcccatgctccaggtgccttcgaccaacttctcttcgacgtgatgcaggaggcac 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3886 ccgatgcccatgctccaggtgccttcgaccaacttctcttcgacgtgatgcaggaggcac 3945 Query: 241 tgcaggtgcattttcagggcttgcagtatagggggcgcaatgcaggctatgagatcgatg 300 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 3946 tgcaggtgcattttcagggcttgcagtatagggagcgcaatgcaggctatgagatcgatg 4005 Query: 301 cgcacatggtggaccagggctttaacaatcagatcggaattcacccggagactggctttg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4006 cgcacatggtggaccagggctttaacaatcagatcggaattcacccggagactggctttg 4065 Query: 361 tattcggaggcaataacttcaactgcggcacttggatggacaaaatgggatcctcacaga 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4066 tattcggaggcaataacttcaactgcggcacttggatggacaaaatgggatcctcacaga 4125 Query: 421 aggccggaaacaagggacgtccaagtacgccgcgcgacggatcagccgtggagctcgttg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4126 aggccggaaacaagggacgtccaagtacgccgcgcgacggatcagccgtggagctcgttg 4185 Query: 481 gcctccagtatgccgtactccggtttatgcaaagcctagccgaaaaggaggttatcccgt 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4186 gcctccagtatgccgtactccggtttatgcaaagcctagccgaaaaggaggttatcccgt 4245 Query: 541 acaccggcgtggaacgaaagggtccatcgggcgaagtgaccaagtggagctacaaggagt 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4246 acaccggcgtggaacgaaagggtccatcgggcgaagtgaccaagtggagctacaaggagt 4305 Query: 601 gggcggatcgcatcaagaacaactttgacaagtatttctttgtatccgaatcggaaacct 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4306 gggcggatcgcatcaagaacaactttgacaagtatttctttgtatccgaatcggaaacct 4365 Query: 661 gctcggtggccaacaagaagcttatctacaaggacagctatggagccacccagagttg 718 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4366 gctcggtggccaacaagaagcttatctacaaggacagctatggagccacccagagttg 4423 >CG9485-RA feature: mRNA loc=2R:join(16356231..16356334,16357975..16358315, 16358379..16358736,16358787..16360190,16360248..16361103, 16361160..16361337,16361398..16361567, 16361632..16363120);ID=FBan0009485;gene_id=FBgn0034618;ge ne_sym=CG9485;sym=CG9485;scaffold=AE003453;len=4900 Length = 4900 Score = 1415 bits (714), Expect = 0.0 Identities = 717/718 (99%) Strand = Plus / Plus Query: 1 gtcagacccttcgacacggactcattccgaatcttttggacagcggcagcaagccgagat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3514 gtcagacccttcgacacggactcattccgaatcttttggacagcggcagcaagccgagat 3573 Query: 61 tcaactgccgcgatgctatctggtggtggatgtactgcatcaagcagtatgtggaggatg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3574 tcaactgccgcgatgctatctggtggtggatgtactgcatcaagcagtatgtggaggatg 3633 Query: 121 cccccaagggtgccgagatcctgaaggacaaggtgtcccgcatatttccgtacgacgatg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3634 cccccaagggtgccgagatcctgaaggacaaggtgtcccgcatatttccgtacgacgatg 3693 Query: 181 ccgatgcccatgctccaggtgccttcgaccaacttctcttcgacgtgatgcaggaggcac 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3694 ccgatgcccatgctccaggtgccttcgaccaacttctcttcgacgtgatgcaggaggcac 3753 Query: 241 tgcaggtgcattttcagggcttgcagtatagggggcgcaatgcaggctatgagatcgatg 300 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 3754 tgcaggtgcattttcagggcttgcagtatagggagcgcaatgcaggctatgagatcgatg 3813 Query: 301 cgcacatggtggaccagggctttaacaatcagatcggaattcacccggagactggctttg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3814 cgcacatggtggaccagggctttaacaatcagatcggaattcacccggagactggctttg 3873 Query: 361 tattcggaggcaataacttcaactgcggcacttggatggacaaaatgggatcctcacaga 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3874 tattcggaggcaataacttcaactgcggcacttggatggacaaaatgggatcctcacaga 3933 Query: 421 aggccggaaacaagggacgtccaagtacgccgcgcgacggatcagccgtggagctcgttg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3934 aggccggaaacaagggacgtccaagtacgccgcgcgacggatcagccgtggagctcgttg 3993 Query: 481 gcctccagtatgccgtactccggtttatgcaaagcctagccgaaaaggaggttatcccgt 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3994 gcctccagtatgccgtactccggtttatgcaaagcctagccgaaaaggaggttatcccgt 4053 Query: 541 acaccggcgtggaacgaaagggtccatcgggcgaagtgaccaagtggagctacaaggagt 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4054 acaccggcgtggaacgaaagggtccatcgggcgaagtgaccaagtggagctacaaggagt 4113 Query: 601 gggcggatcgcatcaagaacaactttgacaagtatttctttgtatccgaatcggaaacct 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4114 gggcggatcgcatcaagaacaactttgacaagtatttctttgtatccgaatcggaaacct 4173 Query: 661 gctcggtggccaacaagaagcttatctacaaggacagctatggagccacccagagttg 718 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4174 gctcggtggccaacaagaagcttatctacaaggacagctatggagccacccagagttg 4231 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 18,553 Number of Sequences: 18737 Number of extensions: 18553 Number of successful extensions: 446 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 443 Number of HSP's gapped (non-prelim): 3 length of query: 718 length of database: 41,270,998 effective HSP length: 17 effective length of query: 701 effective length of database: 40,952,469 effective search space: 28707680769 effective search space used: 28707680769 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI403607|AI403607 GH23081.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH23081 5prime similar to Y00831: Drosophila Mst87F gene for put. structural sperm protein, mRNA sequence. (641 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Mst87F-RA feature: mRNA loc=3R:complement(9652886..9653229,96533... 779 0.0 >Mst87F-RA feature: mRNA loc=3R:complement(9652886..9653229, 9653320..9653451);ID=FBan0017956;gene_id=FBgn0002862;gen e_sym=Mst87F;sym=CG17956;scaffold=AE003702;len=476 Length = 476 Score = 779 bits (393), Expect = 0.0 Identities = 393/393 (100%) Strand = Plus / Plus Query: 1 aacacatcaaaatttgtcgtctagtctcaaattatttctttttgttcggttcaaaaactt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 78 aacacatcaaaatttgtcgtctagtctcaaattatttctttttgttcggttcaaaaactt 137 Query: 61 ttacgaattaatcatgtgctgcggaccctgtggaccctgctgcggaccttgctgcggacc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 138 ttacgaattaatcatgtgctgcggaccctgtggaccctgctgcggaccttgctgcggacc 197 Query: 121 ctgctgtggtccatgcggaccatgcggaggaggatgtggaccctgctatggaccgaatgt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 198 ctgctgtggtccatgcggaccatgcggaggaggatgtggaccctgctatggaccgaatgt 257 Query: 181 ctgcggaccatgctatgcctgtggaccctgtggcggctgctattgtggatacccttgctg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 258 ctgcggaccatgctatgcctgtggaccctgtggcggctgctattgtggatacccttgctg 317 Query: 241 ctagacagttgcaactggccatgtccaagaagggttcaccagaacaccaagacgatagga 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 318 ctagacagttgcaactggccatgtccaagaagggttcaccagaacaccaagacgatagga 377 Query: 301 tagaacctatccctatttcatcctcgtattcatctaatattcgtgaaccacaaatatagg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 378 tagaacctatccctatttcatcctcgtattcatctaatattcgtgaaccacaaatatagg 437 Query: 361 tatttgagacaataaatatgaggtgtaagcttc 393 ||||||||||||||||||||||||||||||||| Sbjct: 438 tatttgagacaataaatatgaggtgtaagcttc 470 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,495 Number of Sequences: 18737 Number of extensions: 14495 Number of successful extensions: 437 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 432 Number of HSP's gapped (non-prelim): 1 length of query: 641 length of database: 41,270,998 effective HSP length: 17 effective length of query: 624 effective length of database: 40,952,469 effective search space: 25554340656 effective search space used: 25554340656 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI403922|AI403922 GH23468.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH23468 3prime, mRNA sequence. (500 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG4523-RB feature: mRNA loc=X:join(6424224..6424450,6424595..642... 987 0.0 CG4523-RA feature: mRNA loc=X:join(6424224..6424450,6424509..642... 987 0.0 >CG4523-RB feature: mRNA loc=X:join(6424224..6424450,6424595..6424837, 6424894..6425097,6425162..6425947,6426011..6427024, 6427089..6427394);ID=FBan0004523;gene_id=FBgn0029891;gene _sym=CG4523;sym=CG4523;scaffold=AE003438;len=2780 Length = 2780 Score = 987 bits (498), Expect = 0.0 Identities = 498/498 (100%) Strand = Plus / Minus Query: 3 ttttggcgttaattttgatttcatttataaatacatatgtaaaatataggtatcacacgc 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2780 ttttggcgttaattttgatttcatttataaatacatatgtaaaatataggtatcacacgc 2721 Query: 63 ttttccatttgattttctcagagtaacaagtagaaggcttttctcctacgccaccacatt 122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2720 ttttccatttgattttctcagagtaacaagtagaaggcttttctcctacgccaccacatt 2661 Query: 123 ctggatccagttgagggcgccgcgaatgcgacgcagccgggcgcgtgccagaaagctgca 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2660 ctggatccagttgagggcgccgcgaatgcgacgcagccgggcgcgtgccagaaagctgca 2601 Query: 183 tatgagcaggtactccacataggcgcgcctattgccacagctggccactggcatcaatcc 242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2600 tatgagcaggtactccacataggcgcgcctattgccacagctggccactggcatcaatcc 2541 Query: 243 ggcgcccatctgtggacgaccctcgcacataatcttagtggtcagcgaaaggagccactg 302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2540 ggcgcccatctgtggacgaccctcgcacataatcttagtggtcagcgaaaggagccactg 2481 Query: 303 taggatctccggactgttgggcatgccgcccgccttaagccaattggatggggcccagag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2480 taggatctccggactgttgggcatgccgcccgccttaagccaattggatggggcccagag 2421 Query: 363 gaacagctgcaccacatttgccgcaatatccggactgacccgcttggacgggttgggatt 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2420 gaacagctgcaccacatttgccgcaatatccggactgacccgcttggacgggttgggatt 2361 Query: 423 gaggatgttgtagaccagctgttgcagcagcggcgggcaagcatcgctcattggcggcaa 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2360 gaggatgttgtagaccagctgttgcagcagcggcgggcaagcatcgctcattggcggcaa 2301 Query: 483 ttggtcctgtcggtaatc 500 |||||||||||||||||| Sbjct: 2300 ttggtcctgtcggtaatc 2283 >CG4523-RA feature: mRNA loc=X:join(6424224..6424450,6424509..6424837, 6424900..6425097,6425162..6425947,6426011..6427024, 6427089..6427394);ID=FBan0004523;gene_id=FBgn0029891;gene _sym=CG4523;sym=CG4523;scaffold=AE003438;len=2860 Length = 2860 Score = 987 bits (498), Expect = 0.0 Identities = 498/498 (100%) Strand = Plus / Minus Query: 3 ttttggcgttaattttgatttcatttataaatacatatgtaaaatataggtatcacacgc 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2860 ttttggcgttaattttgatttcatttataaatacatatgtaaaatataggtatcacacgc 2801 Query: 63 ttttccatttgattttctcagagtaacaagtagaaggcttttctcctacgccaccacatt 122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2800 ttttccatttgattttctcagagtaacaagtagaaggcttttctcctacgccaccacatt 2741 Query: 123 ctggatccagttgagggcgccgcgaatgcgacgcagccgggcgcgtgccagaaagctgca 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2740 ctggatccagttgagggcgccgcgaatgcgacgcagccgggcgcgtgccagaaagctgca 2681 Query: 183 tatgagcaggtactccacataggcgcgcctattgccacagctggccactggcatcaatcc 242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2680 tatgagcaggtactccacataggcgcgcctattgccacagctggccactggcatcaatcc 2621 Query: 243 ggcgcccatctgtggacgaccctcgcacataatcttagtggtcagcgaaaggagccactg 302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2620 ggcgcccatctgtggacgaccctcgcacataatcttagtggtcagcgaaaggagccactg 2561 Query: 303 taggatctccggactgttgggcatgccgcccgccttaagccaattggatggggcccagag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2560 taggatctccggactgttgggcatgccgcccgccttaagccaattggatggggcccagag 2501 Query: 363 gaacagctgcaccacatttgccgcaatatccggactgacccgcttggacgggttgggatt 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2500 gaacagctgcaccacatttgccgcaatatccggactgacccgcttggacgggttgggatt 2441 Query: 423 gaggatgttgtagaccagctgttgcagcagcggcgggcaagcatcgctcattggcggcaa 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2440 gaggatgttgtagaccagctgttgcagcagcggcgggcaagcatcgctcattggcggcaa 2381 Query: 483 ttggtcctgtcggtaatc 500 |||||||||||||||||| Sbjct: 2380 ttggtcctgtcggtaatc 2363 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,629 Number of Sequences: 18737 Number of extensions: 14629 Number of successful extensions: 396 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 392 Number of HSP's gapped (non-prelim): 4 length of query: 500 length of database: 41,270,998 effective HSP length: 17 effective length of query: 483 effective length of database: 40,952,469 effective search space: 19780042527 effective search space used: 19780042527 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI403929|AI403929 GH23475.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH23475 5, mRNA sequence. (820 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32371-RA feature: mRNA loc=3L:complement(7726777..7727881);ID=... 1626 0.0 >CG32371-RA feature: mRNA loc=3L:complement(7726777..7727881);ID=FBan0032371;gene_ id=FBgn0052371;gene_sym=CG32371;sym=CG32371;scaffold=AE0 03557;len=1105 Length = 1105 Score = 1626 bits (820), Expect = 0.0 Identities = 820/820 (100%) Strand = Plus / Plus Query: 1 aaacattatttaaatttttcgtacaaaatgtctgagaaatcaaaaacatcagtagtgaat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 55 aaacattatttaaatttttcgtacaaaatgtctgagaaatcaaaaacatcagtagtgaat 114 Query: 61 gttcgctacactaacaagttgtcgagcaattcttcgcgtgcggaaatgctatcctgggtg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 115 gttcgctacactaacaagttgtcgagcaattcttcgcgtgcggaaatgctatcctgggtg 174 Query: 121 aataacacgttgaaatcgcagtttttcaaggtcgaggaattgtgcaccggagcggcatac 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 175 aataacacgttgaaatcgcagtttttcaaggtcgaggaattgtgcaccggagcggcatac 234 Query: 181 tgccagttaatggacatactgtttgcccggtcgatcccgatgcagcgagtcaagtttcgc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 235 tgccagttaatggacatactgtttgcccggtcgatcccgatgcagcgagtcaagtttcgc 294 Query: 241 acaaacgttgagtatgagtacatccagaatttcaagcttttacagggatgtttcaacaaa 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 295 acaaacgttgagtatgagtacatccagaatttcaagcttttacagggatgtttcaacaaa 354 Query: 301 tttgttgttgataagatcattcccatcgaccggctggtcaagggacgataccaggataac 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 355 tttgttgttgataagatcattcccatcgaccggctggtcaagggacgataccaggataac 414 Query: 361 ttcgagttccttcagtggtttcgcaagttcttcgatgccaactatgagagtcgagaatat 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 415 ttcgagttccttcagtggtttcgcaagttcttcgatgccaactatgagagtcgagaatat 474 Query: 421 gatcctgtgatagctcggaatggagcaatgctgggacttggctcgcctcccatggaagcc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 475 gatcctgtgatagctcggaatggagcaatgctgggacttggctcgcctcccatggaagcc 534 Query: 481 aagttacgcaaatcagtgaataagtcaaatccccaaactaaacccaccgaagaatcctct 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 535 aagttacgcaaatcagtgaataagtcaaatccccaaactaaacccaccgaagaatcctct 594 Query: 541 gctcaaacagatagggcaacaacagaaccgaaaaatcaagtgtataagtcaaattctgaa 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 595 gctcaaacagatagggcaacaacagaaccgaaaaatcaagtgtataagtcaaattctgaa 654 Query: 601 aataaaaccatcgaagaagcctctgctcaaacagatttggcaataacagagccggaaaat 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 655 aataaaaccatcgaagaagcctctgctcaaacagatttggcaataacagagccggaaaat 714 Query: 661 caagtgcatgaatcccaaactaaaaccaccgaaaaagcctctgctcaaacagaaaaagca 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 715 caagtgcatgaatcccaaactaaaaccaccgaaaaagcctctgctcaaacagaaaaagca 774 Query: 721 acaacagagccggatagtgaaggttccattgaggagttgcggaattactgtaaatatgtt 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 775 acaacagagccggatagtgaaggttccattgaggagttgcggaattactgtaaatatgtt 834 Query: 781 tcgagaatgaaacaggagaggaacttttacttatcaaaac 820 |||||||||||||||||||||||||||||||||||||||| Sbjct: 835 tcgagaatgaaacaggagaggaacttttacttatcaaaac 874 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 18,629 Number of Sequences: 18737 Number of extensions: 18629 Number of successful extensions: 396 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 388 Number of HSP's gapped (non-prelim): 2 length of query: 820 length of database: 41,270,998 effective HSP length: 17 effective length of query: 803 effective length of database: 40,952,469 effective search space: 32884832607 effective search space used: 32884832607 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI403938|AI403938 GH23489.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH23489 5 similar to CG8723: FBan0008723 'enzyme' located on: 2R 43F8-43F9;: 04/10/2001, mRNA sequence. (748 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG11198-RB feature: mRNA loc=2R:complement(3035012..3035522,3035... 896 0.0 CG11198-RA feature: mRNA loc=2R:complement(3035012..3035522,3035... 896 0.0 CG17108-RA feature: mRNA loc=2L:complement(10685347..10686512);I... 589 e-167 >CG11198-RB feature: mRNA loc=2R:complement(3035012..3035522,3035591..3035725, 3035787..3036134,3036205..3037074,3037196..3037624, 3037687..3037857,3037923..3038225,3038290..3042023, 3042085..3042373,3043542..3043908,3045782..3045903, 3045967..3046352, 3047967..3048125);ID=FBan0011198;gene_id=FBgn0033246;gene _sym=CG11198;sym=CG11198;scaffold=AE003839;len=7824 Length = 7824 Score = 896 bits (452), Expect = 0.0 Identities = 452/452 (100%) Strand = Plus / Minus Query: 3 aagaggtcaattcacttagcgtgttggccaattcgtccgttagtccaggttcgttggccc 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3612 aagaggtcaattcacttagcgtgttggccaattcgtccgttagtccaggttcgttggccc 3553 Query: 63 acaggtgatcaatgagcagagtgaccagcagattcttcttggccacctgagagtgcgaga 122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3552 acaggtgatcaatgagcagagtgaccagcagattcttcttggccacctgagagtgcgaga 3493 Query: 123 agatggtgttgaccaccgtctgcatgtcgtccttgttgtgctctcgcaccagtcccacgc 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3492 agatggtgttgaccaccgtctgcatgtcgtccttgttgtgctctcgcaccagtcccacgc 3433 Query: 183 atttgtcgtagtgtccatactggaactgcgactctacatcgtagtactgacgcaacagct 242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3432 atttgtcgtagtgtccatactggaactgcgactctacatcgtagtactgacgcaacagct 3373 Query: 243 catgaacggcggccttcattctgccgcggattccgttcctatagcgctgcaccagctgca 302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3372 catgaacggcggccttcattctgccgcggattccgttcctatagcgctgcaccagctgca 3313 Query: 303 caatgctctgggtggtcaggaagaagacatcacggtcagcgcgcttctgcagcgtggccg 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3312 caatgctctgggtggtcaggaagaagacatcacggtcagcgcgcttctgcagcgtggccg 3253 Query: 363 catggctgtcaataacactggcgatctgctgcgaggggaattgggccaggacactagtta 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3252 catggctgtcaataacactggcgatctgctgcgaggggaattgggccaggacactagtta 3193 Query: 423 tgtttcgctcgtacagcgtcatcagtttccgg 454 |||||||||||||||||||||||||||||||| Sbjct: 3192 tgtttcgctcgtacagcgtcatcagtttccgg 3161 >CG11198-RA feature: mRNA loc=2R:complement(3035012..3035522,3035591..3035725, 3035787..3036134,3036205..3037074,3037196..3037624, 3037687..3037857,3037923..3038225,3038290..3042023, 3042085..3042373,3043542..3043908,3045782..3045903, 3045967..3046352,3046503..3046679, 3047967..3048125);ID=FBan0011198;gene_id=FBgn0033246;gene _sym=CG11198;sym=CG11198;scaffold=AE003839;len=8001 Length = 8001 Score = 896 bits (452), Expect = 0.0 Identities = 452/452 (100%) Strand = Plus / Minus Query: 3 aagaggtcaattcacttagcgtgttggccaattcgtccgttagtccaggttcgttggccc 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3789 aagaggtcaattcacttagcgtgttggccaattcgtccgttagtccaggttcgttggccc 3730 Query: 63 acaggtgatcaatgagcagagtgaccagcagattcttcttggccacctgagagtgcgaga 122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3729 acaggtgatcaatgagcagagtgaccagcagattcttcttggccacctgagagtgcgaga 3670 Query: 123 agatggtgttgaccaccgtctgcatgtcgtccttgttgtgctctcgcaccagtcccacgc 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3669 agatggtgttgaccaccgtctgcatgtcgtccttgttgtgctctcgcaccagtcccacgc 3610 Query: 183 atttgtcgtagtgtccatactggaactgcgactctacatcgtagtactgacgcaacagct 242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3609 atttgtcgtagtgtccatactggaactgcgactctacatcgtagtactgacgcaacagct 3550 Query: 243 catgaacggcggccttcattctgccgcggattccgttcctatagcgctgcaccagctgca 302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3549 catgaacggcggccttcattctgccgcggattccgttcctatagcgctgcaccagctgca 3490 Query: 303 caatgctctgggtggtcaggaagaagacatcacggtcagcgcgcttctgcagcgtggccg 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3489 caatgctctgggtggtcaggaagaagacatcacggtcagcgcgcttctgcagcgtggccg 3430 Query: 363 catggctgtcaataacactggcgatctgctgcgaggggaattgggccaggacactagtta 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3429 catggctgtcaataacactggcgatctgctgcgaggggaattgggccaggacactagtta 3370 Query: 423 tgtttcgctcgtacagcgtcatcagtttccgg 454 |||||||||||||||||||||||||||||||| Sbjct: 3369 tgtttcgctcgtacagcgtcatcagtttccgg 3338 >CG17108-RA feature: mRNA loc=2L:complement(10685347..10686512);ID=FBan0017108;gen e_id=FBgn0032285;gene_sym=CG17108;sym=CG17108;scaffold=A E003629;len=1166 Length = 1166 Score = 589 bits (297), Expect = e-167 Identities = 297/297 (100%) Strand = Plus / Plus Query: 452 cggttctggaggacttggatctggcggtttcggctctggcggtgatttaggacttggagg 511 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 229 cggttctggaggacttggatctggcggtttcggctctggcggtgatttaggacttggagg 288 Query: 512 cggcggtgtcggaggaggtcccttcgcaggtggccatgctggcggtggagtgatctccgg 571 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 289 cggcggtgtcggaggaggtcccttcgcaggtggccatgctggcggtggagtgatctccgg 348 Query: 572 cggaggtcattctggaggtggaggcggattcggtggcggtcccggattcggatcaggtgg 631 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 349 cggaggtcattctggaggtggaggcggattcggtggcggtcccggattcggatcaggtgg 408 Query: 632 tcattccggtggaggaatcggtgacggccctggatttggatcaggtggatattccggagg 691 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 409 tcattccggtggaggaatcggtgacggccctggatttggatcaggtggatattccggagg 468 Query: 692 aggtggcggaatcggcggtggaggtggccattctggtggaggtagcggaatcggtgg 748 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 469 aggtggcggaatcggcggtggaggtggccattctggtggaggtagcggaatcggtgg 525 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 24,836 Number of Sequences: 18737 Number of extensions: 24836 Number of successful extensions: 761 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 751 Number of HSP's gapped (non-prelim): 8 length of query: 748 length of database: 41,270,998 effective HSP length: 17 effective length of query: 731 effective length of database: 40,952,469 effective search space: 29936254839 effective search space used: 29936254839 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI404184|AI404184 GH23808.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH23808 5 similar to M21017: D.melanogaster 18S, 5.8S 2S and 28S rRNA genes, complete, and 18S rRNA gene, 5' end, clone pDm238, mRNA sequence. (765 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,655 Number of Sequences: 18737 Number of extensions: 12655 Number of successful extensions: 224 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 224 Number of HSP's gapped (non-prelim): 0 length of query: 765 length of database: 41,270,998 effective HSP length: 17 effective length of query: 748 effective length of database: 40,952,469 effective search space: 30632446812 effective search space used: 30632446812 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI404343|AI404343 GH24005.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH24005 5, mRNA sequence. (537 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9866 Number of Sequences: 18737 Number of extensions: 9866 Number of successful extensions: 205 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 205 Number of HSP's gapped (non-prelim): 0 length of query: 537 length of database: 41,270,998 effective HSP length: 17 effective length of query: 520 effective length of database: 40,952,469 effective search space: 21295283880 effective search space used: 21295283880 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI404380|AI404380 GH24057.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH24057 5, mRNA sequence. (473 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG30023-RA feature: mRNA loc=2R:complement(6449443..6450152,6450... 394 e-109 >CG30023-RA feature: mRNA loc=2R:complement(6449443..6450152,6450266..6451306, 6451373..6451776,6455781..6455891, 6461604..6462140);ID=FBan0030023;gene_id=FBgn0050023;gene _sym=CG30023;sym=CG30023;scaffold=AE003826;len=2803 Length = 2803 Score = 394 bits (199), Expect = e-109 Identities = 202/203 (99%) Strand = Plus / Minus Query: 59 ctgcagtctttgggctcgttgcagcgatagccggaggggtttcttgggcggagtgggtct 118 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2295 ctgcagactttgggctcgttgcagcgatagccggaggggtttcttgggcggagtgggtct 2236 Query: 119 agtggtacgcgtctcagtcgcaggcttcgattcgttttcgctatcgaaatccagggattt 178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2235 agtggtacgcgtctcagtcgcaggcttcgattcgttttcgctatcgaaatccagggattt 2176 Query: 179 tacactcctcatatcgctgggcaggcgggctcgaagtgtgttcgactcactttgtcgggg 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2175 tacactcctcatatcgctgggcaggcgggctcgaagtgtgttcgactcactttgtcgggg 2116 Query: 239 cgtgtctcggcgacgatccagtc 261 ||||||||||||||||||||||| Sbjct: 2115 cgtgtctcggcgacgatccagtc 2093 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,523 Number of Sequences: 18737 Number of extensions: 10523 Number of successful extensions: 261 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 258 Number of HSP's gapped (non-prelim): 3 length of query: 473 length of database: 41,270,998 effective HSP length: 17 effective length of query: 456 effective length of database: 40,952,469 effective search space: 18674325864 effective search space used: 18674325864 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI404401|AI404401 GH24085.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH24085 5prime, mRNA sequence. (703 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG1394-RA feature: mRNA loc=X:complement(10911761..10912587);ID=... 632 0.0 >CG1394-RA feature: mRNA loc=X:complement(10911761..10912587);ID=FBan0001394;gene _id=FBgn0030277;gene_sym=CG1394;sym=CG1394;scaffold=AE00 3485;len=827 Length = 827 Score = 632 bits (319), Expect = 0.0 Identities = 319/319 (100%) Strand = Plus / Plus Query: 60 tcgaaagaaaaactgtttctttttcaccactttcccaaattatttgtatttaggatttac 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 62 tcgaaagaaaaactgtttctttttcaccactttcccaaattatttgtatttaggatttac 121 Query: 120 tcaaccgcaactcacaatatgtcgaattcgttttcgtactggaatggccagccgttgaat 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 122 tcaaccgcaactcacaatatgtcgaattcgttttcgtactggaatggccagccgttgaat 181 Query: 180 gctcccgtttatccgcagatgggtgacttcatgcagcactctgccgctggagcagccgct 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 182 gctcccgtttatccgcagatgggtgacttcatgcagcactctgccgctggagcagccgct 241 Query: 240 ccaccaccactatcagcaacagcagcagcaccaggattaggatcagccggcggactagga 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 242 ccaccaccactatcagcaacagcagcagcaccaggattaggatcagccggcggactagga 301 Query: 300 ggttggcctagccagggcgcagctcaggcacactccatgctaccatacgccggaggagcc 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 302 ggttggcctagccagggcgcagctcaggcacactccatgctaccatacgccggaggagcc 361 Query: 360 ggtggcatgccggctgcca 378 ||||||||||||||||||| Sbjct: 362 ggtggcatgccggctgcca 380 Score = 517 bits (261), Expect = e-146 Identities = 261/261 (100%) Strand = Plus / Plus Query: 443 gggtgccatgtcgtgtggcatgcccattacaggagcccagcatatagtgccgccacccgt 502 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 445 gggtgccatgtcgtgtggcatgcccattacaggagcccagcatatagtgccgccacccgt 504 Query: 503 ggaccgttcaatatatggagacatacccggacgaaatgaaccgtgcatcgacaatggcga 562 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 505 ggaccgttcaatatatggagacatacccggacgaaatgaaccgtgcatcgacaatggcga 564 Query: 563 agccttctgcgcctacaacggcatggacatgagcatgaactacggcggaggcagtgcatc 622 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 565 agccttctgcgcctacaacggcatggacatgagcatgaactacggcggaggcagtgcatc 624 Query: 623 caagggtggcttctggtaggatcgatgccacgaacaatgacagcacgagcatcttcaccg 682 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 625 caagggtggcttctggtaggatcgatgccacgaacaatgacagcacgagcatcttcaccg 684 Query: 683 aacgactaaagtgaatcgcat 703 ||||||||||||||||||||| Sbjct: 685 aacgactaaagtgaatcgcat 705 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 34,710 Number of Sequences: 18737 Number of extensions: 34710 Number of successful extensions: 4186 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 4182 Number of HSP's gapped (non-prelim): 4 length of query: 703 length of database: 41,270,998 effective HSP length: 17 effective length of query: 686 effective length of database: 40,952,469 effective search space: 28093393734 effective search space used: 28093393734 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI405079|AI405079 GH24992.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH24992 5 similar to SP2637: FBan0005473 'enzyme' located on: 2R 55E5-55E6;: 04/10/2001, mRNA sequence. (620 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value SP2637-RB feature: mRNA loc=2R:complement(13704743..13704913,137... 1223 0.0 SP2637-RA feature: mRNA loc=2R:complement(13704743..13704913,137... 795 0.0 >SP2637-RB feature: mRNA loc=2R:complement(13704743..13704913,13705179..13705292, 13705355..13705516,13705579..13705787, 13705852..13706034,13706125..13706482, 13716244..13716492);ID=FBan0005473;gene_id=FBgn0034371;g ene_sym=SP2637;sym=CG5473;scaffold=AE003798;len=1446 Length = 1446 Score = 1223 bits (617), Expect = 0.0 Identities = 619/620 (99%) Strand = Plus / Plus Query: 1 tctcgtcgtctcgcggaaactttggcgcacacgcagttccagacaaatacaatttagaat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31 tctcgtcgtctcgcggaaactttggcgcacacgcagttccagacaaatacaatttagaat 90 Query: 61 taaataatatttaaaaacacaagtgttactaaaagtttcctaaaaaacgattgttaagaa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 91 taaataatatttaaaaacacaagtgttactaaaagtttcctaaaaaacgattgttaagaa 150 Query: 121 atgccgatggctttgtgaaaatcagtgaagataacaatccttaagctaaagtctatatac 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 151 atgccgatggctttgtgaaaatcagtgaagataacaatccttaagctaaagtctatatac 210 Query: 181 atagatctcctatagtgcagtgagaaattggaattcaattttgcctgctactcatcttgc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 211 atagatctcctatagtgcagtgagaaattggaattcaattttgcctgctactcatcttgc 270 Query: 241 tcgagagccaaaatccaagcaattgaaagcgaaacccttgcgagagggtcaaggaaggat 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 271 tcgagagccaaaatccaagcaattgaaagcgaaacccttgcgagagggtcaaggaaggat 330 Query: 301 acaacagacgaacagacagccaggatggtgctcgtgctgaatggtgtgctgcaggatgac 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 331 acaacagacgaacagacagccaggatggtgctcgtgctgaatggtgtgctgcaggatgac 390 Query: 361 tgccccatggacaccaacagcctgttcctgcagcatcccgtctacagagactacgcccag 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 391 tgccccatggacaccaacagcctgttcctgcagcatcccgtctacagagactacgcccag 450 Query: 421 cagctgcactccattcaggccaagtcggtgggtccggtgggtctgctctacgtgggtcag 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 451 cagctgcactccattcaggccaagtcggtgggtccggtgggtctgctctacgtgggtcag 510 Query: 481 cgggagatggccgcctctgccccgcacgacaagcacgtcaacatcatcggtgccgacgat 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 511 cgggagatggccgcctctgccccgcacgacaagcacgtcaacatcatcggtgccgacgat 570 Query: 541 gccaccacctgtattatcgntgtggtccggcactccggatctggtgctgtggccctggcg 600 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 571 gccaccacctgtattatcgttgtggtccggcactccggatctggtgctgtggccctggcg 630 Query: 601 cacttcgatggcagcggcgt 620 |||||||||||||||||||| Sbjct: 631 cacttcgatggcagcggcgt 650 >SP2637-RA feature: mRNA loc=2R:complement(13704743..13704913,13705179..13705292, 13705355..13705516,13705579..13705787, 13705852..13706034,13706125..13706482, 13721800..13721920);ID=FBan0005473;gene_id=FBgn0034371;g ene_sym=SP2637;sym=CG5473;scaffold=AE003798;len=1318 Length = 1318 Score = 795 bits (401), Expect = 0.0 Identities = 403/404 (99%) Strand = Plus / Plus Query: 217 aattttgcctgctactcatcttgctcgagagccaaaatccaagcaattgaaagcgaaacc 276 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 119 aattttgcctgctactcatcttgctcgagagccaaaatccaagcaattgaaagcgaaacc 178 Query: 277 cttgcgagagggtcaaggaaggatacaacagacgaacagacagccaggatggtgctcgtg 336 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 179 cttgcgagagggtcaaggaaggatacaacagacgaacagacagccaggatggtgctcgtg 238 Query: 337 ctgaatggtgtgctgcaggatgactgccccatggacaccaacagcctgttcctgcagcat 396 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 239 ctgaatggtgtgctgcaggatgactgccccatggacaccaacagcctgttcctgcagcat 298 Query: 397 cccgtctacagagactacgcccagcagctgcactccattcaggccaagtcggtgggtccg 456 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 299 cccgtctacagagactacgcccagcagctgcactccattcaggccaagtcggtgggtccg 358 Query: 457 gtgggtctgctctacgtgggtcagcgggagatggccgcctctgccccgcacgacaagcac 516 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 359 gtgggtctgctctacgtgggtcagcgggagatggccgcctctgccccgcacgacaagcac 418 Query: 517 gtcaacatcatcggtgccgacgatgccaccacctgtattatcgntgtggtccggcactcc 576 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 419 gtcaacatcatcggtgccgacgatgccaccacctgtattatcgttgtggtccggcactcc 478 Query: 577 ggatctggtgctgtggccctggcgcacttcgatggcagcggcgt 620 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 479 ggatctggtgctgtggccctggcgcacttcgatggcagcggcgt 522 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 17,796 Number of Sequences: 18737 Number of extensions: 17796 Number of successful extensions: 395 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 393 Number of HSP's gapped (non-prelim): 2 length of query: 620 length of database: 41,270,998 effective HSP length: 17 effective length of query: 603 effective length of database: 40,952,469 effective search space: 24694338807 effective search space used: 24694338807 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI405098|AI405098 GH25016.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH25016 5prime, mRNA sequence. (474 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31997-RA feature: mRNA loc=4:complement(174959..175215,175277.... 932 0.0 >CG31997-RA feature: mRNA loc=4:complement(174959..175215,175277..175397, 176015..176302);ID=FBan0031997;gene_id=FBgn0051997;gene_ sym=CG31997;sym=CG31997;scaffold=AE003844;len=666 Length = 666 Score = 932 bits (470), Expect = 0.0 Identities = 470/470 (100%) Strand = Plus / Plus Query: 1 attccatttgtcttcgttcttttgtattatttttacaaagcgataatattttaatcgttt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 42 attccatttgtcttcgttcttttgtattatttttacaaagcgataatattttaatcgttt 101 Query: 61 atgattattacaatataacaaaaagttaacatctttggaatcttaaaaatgagttttcat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 102 atgattattacaatataacaaaaagttaacatctttggaatcttaaaaatgagttttcat 161 Query: 121 tttgctgtactgacccttattttaacagccttcacagtttctctgtgtgctgaacaaaaa 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 162 tttgctgtactgacccttattttaacagccttcacagtttctctgtgtgctgaacaaaaa 221 Query: 181 attacaaagagtgacgcaggtgaaatacgaattttcaaacgtcttattcctgccgatgtt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 222 attacaaagagtgacgcaggtgaaatacgaattttcaaacgtcttattcctgccgatgtt 281 Query: 241 ctacgagattttccgggaatgtgctttgcttcaactcgatgtgccactgttgagcctgga 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 282 ctacgagattttccgggaatgtgctttgcttcaactcgatgtgccactgttgagcctgga 341 Query: 301 aagtcgtgggaccttactccattctgcggtcgatctacttgtgttcaaaatgaggaaaat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 342 aagtcgtgggaccttactccattctgcggtcgatctacttgtgttcaaaatgaggaaaat 401 Query: 361 gatgcaaagctattcgaactcgtagaagactgcggcccattgccactggcgaatgacaaa 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 402 gatgcaaagctattcgaactcgtagaagactgcggcccattgccactggcgaatgacaaa 461 Query: 421 tgtaaattggacacagagaagactaataaaaccgcatcgtttccttattg 470 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 462 tgtaaattggacacagagaagactaataaaaccgcatcgtttccttattg 511 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,572 Number of Sequences: 18737 Number of extensions: 10572 Number of successful extensions: 255 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 254 Number of HSP's gapped (non-prelim): 1 length of query: 474 length of database: 41,270,998 effective HSP length: 17 effective length of query: 457 effective length of database: 40,952,469 effective search space: 18715278333 effective search space used: 18715278333 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI405168|AI405168 GH25094.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH25094 5 similar to CG17450: FBan0017450 located on: U;: 04/10/2001, mRNA sequence. (571 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG17450-RA feature: mRNA loc=X:complement(21278018..21278555,212... 1132 0.0 CG32819-RB feature: mRNA loc=X:complement(21290192..21290729,212... 1132 0.0 CG32820-RB feature: mRNA loc=X:complement(21284100..21284637,212... 866 0.0 CG17450-RB feature: mRNA loc=X:complement(21278018..21278555,212... 700 0.0 CG32820-RA feature: mRNA loc=X:complement(21284100..21284637,212... 700 0.0 CG32819-RA feature: mRNA loc=X:complement(21290192..21290729,212... 700 0.0 >CG17450-RA feature: mRNA loc=X:complement(21278018..21278555,21278713..21279300, 21279424..21280004);ID=FBan0017450;gene_id=FBgn0040028;g ene_sym=CG17450;sym=CG17450;scaffold=AE003122;len=1707 Length = 1707 Score = 1132 bits (571), Expect = 0.0 Identities = 571/571 (100%) Strand = Plus / Plus Query: 1 tgctctgtgctttttgaaatcatttgtttgttcccaacacccagtccaaattccaagtgg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11 tgctctgtgctttttgaaatcatttgtttgttcccaacacccagtccaaattccaagtgg 70 Query: 61 cacaaattattagtacttcactatcccaacgattcgacttataaccgataccaataccga 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 71 cacaaattattagtacttcactatcccaacgattcgacttataaccgataccaataccga 130 Query: 121 aacctccgaccacgatgagtcacaatggggctggtttgggagccggatccggcggatcgc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 131 aacctccgaccacgatgagtcacaatggggctggtttgggagccggatccggcggatcgc 190 Query: 181 ccatcccgccaaccacggtcatgtattcccaattgcagccatggagccaggcgggcgctc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 191 ccatcccgccaaccacggtcatgtattcccaattgcagccatggagccaggcgggcgctc 250 Query: 241 cgccctgcatggagcccgtcatggggccttcgatcccgccgagagttggcgccgcctacg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 251 cgccctgcatggagcccgtcatggggccttcgatcccgccgagagttggcgccgcctacg 310 Query: 301 agacgcccacgaagcacccgtggcgccctgctatggcctatgagctaatccaggtgaagc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 311 agacgcccacgaagcacccgtggcgccctgctatggcctatgagctaatccaggtgaagc 370 Query: 361 atatgcccgagcagccggtgaccaaccagctgaccaagcagtgcttcctgcccaagggca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 371 atatgcccgagcagccggtgaccaaccagctgaccaagcagtgcttcctgcccaagggca 430 Query: 421 tgaagacggacggcatgatattccccaacttggtcaccgggttcgatcgcaatccacagc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 431 tgaagacggacggcatgatattccccaacttggtcaccgggttcgatcgcaatccacagc 490 Query: 481 acgccgcccgggctgccctctacacgcggtacaccagcaacgagtggtacaacaacaaca 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 491 acgccgcccgggctgccctctacacgcggtacaccagcaacgagtggtacaacaacaaca 550 Query: 541 tgaccaagtactccgagtcgaacatgaatcg 571 ||||||||||||||||||||||||||||||| Sbjct: 551 tgaccaagtactccgagtcgaacatgaatcg 581 >CG32819-RB feature: mRNA loc=X:complement(21290192..21290729,21290890..21291477, 21291601..21292181);ID=FBan0032819;gene_id=FBgn0052819;g ene_sym=CG32819;sym=CG32819;scaffold=AE003122;len=1707 Length = 1707 Score = 1132 bits (571), Expect = 0.0 Identities = 571/571 (100%) Strand = Plus / Plus Query: 1 tgctctgtgctttttgaaatcatttgtttgttcccaacacccagtccaaattccaagtgg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11 tgctctgtgctttttgaaatcatttgtttgttcccaacacccagtccaaattccaagtgg 70 Query: 61 cacaaattattagtacttcactatcccaacgattcgacttataaccgataccaataccga 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 71 cacaaattattagtacttcactatcccaacgattcgacttataaccgataccaataccga 130 Query: 121 aacctccgaccacgatgagtcacaatggggctggtttgggagccggatccggcggatcgc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 131 aacctccgaccacgatgagtcacaatggggctggtttgggagccggatccggcggatcgc 190 Query: 181 ccatcccgccaaccacggtcatgtattcccaattgcagccatggagccaggcgggcgctc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 191 ccatcccgccaaccacggtcatgtattcccaattgcagccatggagccaggcgggcgctc 250 Query: 241 cgccctgcatggagcccgtcatggggccttcgatcccgccgagagttggcgccgcctacg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 251 cgccctgcatggagcccgtcatggggccttcgatcccgccgagagttggcgccgcctacg 310 Query: 301 agacgcccacgaagcacccgtggcgccctgctatggcctatgagctaatccaggtgaagc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 311 agacgcccacgaagcacccgtggcgccctgctatggcctatgagctaatccaggtgaagc 370 Query: 361 atatgcccgagcagccggtgaccaaccagctgaccaagcagtgcttcctgcccaagggca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 371 atatgcccgagcagccggtgaccaaccagctgaccaagcagtgcttcctgcccaagggca 430 Query: 421 tgaagacggacggcatgatattccccaacttggtcaccgggttcgatcgcaatccacagc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 431 tgaagacggacggcatgatattccccaacttggtcaccgggttcgatcgcaatccacagc 490 Query: 481 acgccgcccgggctgccctctacacgcggtacaccagcaacgagtggtacaacaacaaca 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 491 acgccgcccgggctgccctctacacgcggtacaccagcaacgagtggtacaacaacaaca 550 Query: 541 tgaccaagtactccgagtcgaacatgaatcg 571 ||||||||||||||||||||||||||||||| Sbjct: 551 tgaccaagtactccgagtcgaacatgaatcg 581 >CG32820-RB feature: mRNA loc=X:complement(21284100..21284637,21284798..21285385, 21285509..21285945);ID=FBan0032820;gene_id=FBgn0052820;g ene_sym=CG32820;sym=CG32820;scaffold=AE003122;len=1563 Length = 1563 Score = 866 bits (437), Expect = 0.0 Identities = 437/437 (100%) Strand = Plus / Plus Query: 135 atgagtcacaatggggctggtttgggagccggatccggcggatcgcccatcccgccaacc 194 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atgagtcacaatggggctggtttgggagccggatccggcggatcgcccatcccgccaacc 60 Query: 195 acggtcatgtattcccaattgcagccatggagccaggcgggcgctccgccctgcatggag 254 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 acggtcatgtattcccaattgcagccatggagccaggcgggcgctccgccctgcatggag 120 Query: 255 cccgtcatggggccttcgatcccgccgagagttggcgccgcctacgagacgcccacgaag 314 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 cccgtcatggggccttcgatcccgccgagagttggcgccgcctacgagacgcccacgaag 180 Query: 315 cacccgtggcgccctgctatggcctatgagctaatccaggtgaagcatatgcccgagcag 374 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 cacccgtggcgccctgctatggcctatgagctaatccaggtgaagcatatgcccgagcag 240 Query: 375 ccggtgaccaaccagctgaccaagcagtgcttcctgcccaagggcatgaagacggacggc 434 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ccggtgaccaaccagctgaccaagcagtgcttcctgcccaagggcatgaagacggacggc 300 Query: 435 atgatattccccaacttggtcaccgggttcgatcgcaatccacagcacgccgcccgggct 494 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 atgatattccccaacttggtcaccgggttcgatcgcaatccacagcacgccgcccgggct 360 Query: 495 gccctctacacgcggtacaccagcaacgagtggtacaacaacaacatgaccaagtactcc 554 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 gccctctacacgcggtacaccagcaacgagtggtacaacaacaacatgaccaagtactcc 420 Query: 555 gagtcgaacatgaatcg 571 ||||||||||||||||| Sbjct: 421 gagtcgaacatgaatcg 437 >CG17450-RB feature: mRNA loc=X:complement(21278018..21278555,21278713..21279300, 21279424..21279776, 21280442..21280768);ID=FBan0017450;gene_id=FBgn0040028;g ene_sym=CG17450;sym=CG17450;scaffold=AE003122;len=1806 Length = 1806 Score = 700 bits (353), Expect = 0.0 Identities = 353/353 (100%) Strand = Plus / Plus Query: 219 ccatggagccaggcgggcgctccgccctgcatggagcccgtcatggggccttcgatcccg 278 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 328 ccatggagccaggcgggcgctccgccctgcatggagcccgtcatggggccttcgatcccg 387 Query: 279 ccgagagttggcgccgcctacgagacgcccacgaagcacccgtggcgccctgctatggcc 338 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 388 ccgagagttggcgccgcctacgagacgcccacgaagcacccgtggcgccctgctatggcc 447 Query: 339 tatgagctaatccaggtgaagcatatgcccgagcagccggtgaccaaccagctgaccaag 398 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 448 tatgagctaatccaggtgaagcatatgcccgagcagccggtgaccaaccagctgaccaag 507 Query: 399 cagtgcttcctgcccaagggcatgaagacggacggcatgatattccccaacttggtcacc 458 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 508 cagtgcttcctgcccaagggcatgaagacggacggcatgatattccccaacttggtcacc 567 Query: 459 gggttcgatcgcaatccacagcacgccgcccgggctgccctctacacgcggtacaccagc 518 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 568 gggttcgatcgcaatccacagcacgccgcccgggctgccctctacacgcggtacaccagc 627 Query: 519 aacgagtggtacaacaacaacatgaccaagtactccgagtcgaacatgaatcg 571 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 628 aacgagtggtacaacaacaacatgaccaagtactccgagtcgaacatgaatcg 680 >CG32820-RA feature: mRNA loc=X:complement(21284100..21284637,21284798..21285385, 21285509..21285861, 21286534..21286922);ID=FBan0032820;gene_id=FBgn0052820;g ene_sym=CG32820;sym=CG32820;scaffold=AE003122;len=1868 Length = 1868 Score = 700 bits (353), Expect = 0.0 Identities = 353/353 (100%) Strand = Plus / Plus Query: 219 ccatggagccaggcgggcgctccgccctgcatggagcccgtcatggggccttcgatcccg 278 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 390 ccatggagccaggcgggcgctccgccctgcatggagcccgtcatggggccttcgatcccg 449 Query: 279 ccgagagttggcgccgcctacgagacgcccacgaagcacccgtggcgccctgctatggcc 338 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 450 ccgagagttggcgccgcctacgagacgcccacgaagcacccgtggcgccctgctatggcc 509 Query: 339 tatgagctaatccaggtgaagcatatgcccgagcagccggtgaccaaccagctgaccaag 398 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 510 tatgagctaatccaggtgaagcatatgcccgagcagccggtgaccaaccagctgaccaag 569 Query: 399 cagtgcttcctgcccaagggcatgaagacggacggcatgatattccccaacttggtcacc 458 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 570 cagtgcttcctgcccaagggcatgaagacggacggcatgatattccccaacttggtcacc 629 Query: 459 gggttcgatcgcaatccacagcacgccgcccgggctgccctctacacgcggtacaccagc 518 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 630 gggttcgatcgcaatccacagcacgccgcccgggctgccctctacacgcggtacaccagc 689 Query: 519 aacgagtggtacaacaacaacatgaccaagtactccgagtcgaacatgaatcg 571 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 690 aacgagtggtacaacaacaacatgaccaagtactccgagtcgaacatgaatcg 742 >CG32819-RA feature: mRNA loc=X:complement(21290192..21290729,21290890..21291477, 21291601..21291953, 21292626..21293014);ID=FBan0032819;gene_id=FBgn0052819;g ene_sym=CG32819;sym=CG32819;scaffold=AE003122;len=1868 Length = 1868 Score = 700 bits (353), Expect = 0.0 Identities = 353/353 (100%) Strand = Plus / Plus Query: 219 ccatggagccaggcgggcgctccgccctgcatggagcccgtcatggggccttcgatcccg 278 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 390 ccatggagccaggcgggcgctccgccctgcatggagcccgtcatggggccttcgatcccg 449 Query: 279 ccgagagttggcgccgcctacgagacgcccacgaagcacccgtggcgccctgctatggcc 338 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 450 ccgagagttggcgccgcctacgagacgcccacgaagcacccgtggcgccctgctatggcc 509 Query: 339 tatgagctaatccaggtgaagcatatgcccgagcagccggtgaccaaccagctgaccaag 398 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 510 tatgagctaatccaggtgaagcatatgcccgagcagccggtgaccaaccagctgaccaag 569 Query: 399 cagtgcttcctgcccaagggcatgaagacggacggcatgatattccccaacttggtcacc 458 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 570 cagtgcttcctgcccaagggcatgaagacggacggcatgatattccccaacttggtcacc 629 Query: 459 gggttcgatcgcaatccacagcacgccgcccgggctgccctctacacgcggtacaccagc 518 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 630 gggttcgatcgcaatccacagcacgccgcccgggctgccctctacacgcggtacaccagc 689 Query: 519 aacgagtggtacaacaacaacatgaccaagtactccgagtcgaacatgaatcg 571 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 690 aacgagtggtacaacaacaacatgaccaagtactccgagtcgaacatgaatcg 742 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 17,066 Number of Sequences: 18737 Number of extensions: 17066 Number of successful extensions: 351 Number of sequences better than 1.0e-100: 6 Number of HSP's better than 0.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 345 Number of HSP's gapped (non-prelim): 6 length of query: 571 length of database: 41,270,998 effective HSP length: 17 effective length of query: 554 effective length of database: 40,952,469 effective search space: 22687667826 effective search space used: 22687667826 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI405831|AI405831 GH25970.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH25970 5, mRNA sequence. (667 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,750 Number of Sequences: 18737 Number of extensions: 13750 Number of successful extensions: 316 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 316 Number of HSP's gapped (non-prelim): 0 length of query: 667 length of database: 41,270,998 effective HSP length: 17 effective length of query: 650 effective length of database: 40,952,469 effective search space: 26619104850 effective search space used: 26619104850 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI405944|AI405944 GH26101.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH26101 3prime, mRNA sequence. (583 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31008-RA feature: mRNA loc=3R:complement(26804565..26805094);I... 969 0.0 >CG31008-RA feature: mRNA loc=3R:complement(26804565..26805094);ID=FBan0031008;gen e_id=FBgn0051008;gene_sym=CG31008;sym=CG31008;scaffold=A E003776;len=530 Length = 530 Score = 969 bits (489), Expect = 0.0 Identities = 489/489 (100%) Strand = Plus / Minus Query: 1 ctagtaactaaaattttattgcgagttacttgtaaggctgcgcattaacgtcttataatt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 529 ctagtaactaaaattttattgcgagttacttgtaaggctgcgcattaacgtcttataatt 470 Query: 61 tgacaaattaaaatcccttcccctttctagcttcctaaatattgtactggcggtggcatc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 469 tgacaaattaaaatcccttcccctttctagcttcctaaatattgtactggcggtggcatc 410 Query: 121 gtcgcacagcatcgttgaactccttgcacacactgagatcgtcattgtcctcggtgcact 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 409 gtcgcacagcatcgttgaactccttgcacacactgagatcgtcattgtcctcggtgcact 350 Query: 181 tcaagaactccttcatttccttggcgcaaggaccttcttcgactaaatcgctgtggtgcg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 349 tcaagaactccttcatttccttggcgcaaggaccttcttcgactaaatcgctgtggtgcg 290 Query: 241 gctgctggtcacgccgcctgaatagccccgttattcctgatccgatggcatgacccacga 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 289 gctgctggtcacgccgcctgaatagccccgttattcctgatccgatggcatgacccacga 230 Query: 301 ctgatcctgctgccacgcccactgcgtgggcagccgcttccttgaagaccatttcggaat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 229 ctgatcctgctgccacgcccactgcgtgggcagccgcttccttgaagaccatttcggaat 170 Query: 361 tcgtgacggtgggcaccaccgcaggcatatagtttgtagagcctgctttgaccgaagcac 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 169 tcgtgacggtgggcaccaccgcaggcatatagtttgtagagcctgctttgaccgaagcac 110 Query: 421 ttctctgtttgcgtggcatcttttctccccttttccaggctttaaatttatgtatatttt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 109 ttctctgtttgcgtggcatcttttctccccttttccaggctttaaatttatgtatatttt 50 Query: 481 aagccgagc 489 ||||||||| Sbjct: 49 aagccgagc 41 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,657 Number of Sequences: 18737 Number of extensions: 15657 Number of successful extensions: 380 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 379 Number of HSP's gapped (non-prelim): 1 length of query: 583 length of database: 41,270,998 effective HSP length: 17 effective length of query: 566 effective length of database: 40,952,469 effective search space: 23179097454 effective search space used: 23179097454 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI455027|AI455027 LD04413.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD04413 5, mRNA sequence. (725 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value BcDNA:LD08743-RE feature: mRNA loc=2R:join(1810094..1810291,1813... 1328 0.0 BcDNA:LD08743-RD feature: mRNA loc=2R:join(1810434..1810486,1813... 1328 0.0 BcDNA:LD08743-RC feature: mRNA loc=2R:join(1810094..1810291,1813... 1328 0.0 BcDNA:LD08743-RB feature: mRNA loc=2R:join(1810094..1810291,1813... 1328 0.0 BcDNA:LD08743-RA feature: mRNA loc=2R:join(1812986..1813133,1813... 1328 0.0 >BcDNA:LD08743-RE feature: mRNA loc=2R:join(1810094..1810291,1813534..1813686, 1813745..1813890,1815082..1815340,1815607..1815746, 1815801..1815883,1815947..1816019, 1816087..1816941);ID=FBan0003265;gene_id=FBgn0027066;gene _sym=BcDNA:LD08743;sym=CG3265;scaffold=AE003790;len=1907 Length = 1907 Score = 1328 bits (670), Expect = 0.0 Identities = 684/691 (98%) Strand = Plus / Minus Query: 35 ttcttagttacgagtctgtgaacctttcaaaaaagaattttgaaaagggtaggctggctt 94 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1559 ttcttagttacgagtctgtgaacctttcaaaaaagaattttgaaaagggtaggctggctt 1500 Query: 95 tccattagatatcgagatttggttcgtttattccgctaatatacaaacaatttaaatatg 154 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1499 tccattagatatcgagatttggttcgtttattccgctaatatacaaacaatttaaatatg 1440 Query: 155 aaatggttgatggttcacacacatcggcaacatcagcaaaattatcgtgggtacaatttt 214 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1439 aaatggttgatggttcacacacatcggcaacatcagcaaaattatcgtgggtacaatttt 1380 Query: 215 gaatcgnnnnnnntcccgtctctatctgttaagcgacgacgcgttcgtatcaaataaatg 274 |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1379 gaatcgaaaaaaatcccgtctctatctgttaagcgacgacgcgttcgtatcaaataaatg 1320 Query: 275 tttgaagaataactatttaatcacgtggcgatcctgctgtcagcctcggcctaggaaatc 334 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1319 tttgaagaataactatttaatcacgtggcgatcctgctgtcagcctcggcctaggaaatc 1260 Query: 335 aaacactcttcatttgttagtcttctcgtttttgcttaacgtcttcttggattctgtcta 394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1259 aaacactcttcatttgttagtcttctcgtttttgcttaacgtcttcttggattctgtcta 1200 Query: 395 aataataaactctgtccccttcatcatgcttcttgacttatgttttgaatatgtatgcag 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1199 aataataaactctgtccccttcatcatgcttcttgacttatgttttgaatatgtatgcag 1140 Query: 455 caaatgaatttagtgggttttcgttcacgtttcaaattaatactcctcgtcctctggtgg 514 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1139 caaatgaatttagtgggttttcgttcacgtttcaaattaatactcctcgtcctctggtgg 1080 Query: 515 tgcatcgtcaggcggcgcaaaaccatcctcagtcgcatataagatgtccaaaatcttttg 574 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1079 tgcatcgtcaggcggcgcaaaaccatcctcagtcgcatataagatgtccaaaatcttttg 1020 Query: 575 tatgatcggatgcgcctcggcgtcatcggcttcttggcaaagaatttcaatatcccgcaa 634 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1019 tatgatcggatgcgcctcggcgtcatcggcttcttggcaaagaatttcaatatcccgcaa 960 Query: 635 cttagagaagtaaaagtctcgctccttttccaatccctccaggtttatgcgcatatccat 694 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 959 cttagagaagtaaaagtctcgctccttttccaatccctccaggtttatgcgcatatccat 900 Query: 695 cacctgatttgacatctcttctatttgttga 725 ||||||||||||||||||||||||||||||| Sbjct: 899 cacctgatttgacatctcttctatttgttga 869 >BcDNA:LD08743-RD feature: mRNA loc=2R:join(1810434..1810486,1813534..1813686, 1813745..1813890,1815082..1815340,1815604..1815746, 1815801..1815883,1815947..1816019, 1816087..1816941);ID=FBan0003265;gene_id=FBgn0027066;gene _sym=BcDNA:LD08743;sym=CG3265;scaffold=AE003790;len=1765 Length = 1765 Score = 1328 bits (670), Expect = 0.0 Identities = 684/691 (98%) Strand = Plus / Minus Query: 35 ttcttagttacgagtctgtgaacctttcaaaaaagaattttgaaaagggtaggctggctt 94 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1417 ttcttagttacgagtctgtgaacctttcaaaaaagaattttgaaaagggtaggctggctt 1358 Query: 95 tccattagatatcgagatttggttcgtttattccgctaatatacaaacaatttaaatatg 154 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1357 tccattagatatcgagatttggttcgtttattccgctaatatacaaacaatttaaatatg 1298 Query: 155 aaatggttgatggttcacacacatcggcaacatcagcaaaattatcgtgggtacaatttt 214 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1297 aaatggttgatggttcacacacatcggcaacatcagcaaaattatcgtgggtacaatttt 1238 Query: 215 gaatcgnnnnnnntcccgtctctatctgttaagcgacgacgcgttcgtatcaaataaatg 274 |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1237 gaatcgaaaaaaatcccgtctctatctgttaagcgacgacgcgttcgtatcaaataaatg 1178 Query: 275 tttgaagaataactatttaatcacgtggcgatcctgctgtcagcctcggcctaggaaatc 334 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1177 tttgaagaataactatttaatcacgtggcgatcctgctgtcagcctcggcctaggaaatc 1118 Query: 335 aaacactcttcatttgttagtcttctcgtttttgcttaacgtcttcttggattctgtcta 394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1117 aaacactcttcatttgttagtcttctcgtttttgcttaacgtcttcttggattctgtcta 1058 Query: 395 aataataaactctgtccccttcatcatgcttcttgacttatgttttgaatatgtatgcag 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1057 aataataaactctgtccccttcatcatgcttcttgacttatgttttgaatatgtatgcag 998 Query: 455 caaatgaatttagtgggttttcgttcacgtttcaaattaatactcctcgtcctctggtgg 514 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 997 caaatgaatttagtgggttttcgttcacgtttcaaattaatactcctcgtcctctggtgg 938 Query: 515 tgcatcgtcaggcggcgcaaaaccatcctcagtcgcatataagatgtccaaaatcttttg 574 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 937 tgcatcgtcaggcggcgcaaaaccatcctcagtcgcatataagatgtccaaaatcttttg 878 Query: 575 tatgatcggatgcgcctcggcgtcatcggcttcttggcaaagaatttcaatatcccgcaa 634 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 877 tatgatcggatgcgcctcggcgtcatcggcttcttggcaaagaatttcaatatcccgcaa 818 Query: 635 cttagagaagtaaaagtctcgctccttttccaatccctccaggtttatgcgcatatccat 694 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 817 cttagagaagtaaaagtctcgctccttttccaatccctccaggtttatgcgcatatccat 758 Query: 695 cacctgatttgacatctcttctatttgttga 725 ||||||||||||||||||||||||||||||| Sbjct: 757 cacctgatttgacatctcttctatttgttga 727 >BcDNA:LD08743-RC feature: mRNA loc=2R:join(1810094..1810291,1813534..1813686, 1813745..1813890,1814129..1814434,1815082..1815340, 1815604..1815746,1815801..1815883,1815947..1816019, 1816087..1816941);ID=FBan0003265;gene_id=FBgn0027066;gene _sym=BcDNA:LD08743;sym=CG3265;scaffold=AE003790;len=2216 Length = 2216 Score = 1328 bits (670), Expect = 0.0 Identities = 684/691 (98%) Strand = Plus / Minus Query: 35 ttcttagttacgagtctgtgaacctttcaaaaaagaattttgaaaagggtaggctggctt 94 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1868 ttcttagttacgagtctgtgaacctttcaaaaaagaattttgaaaagggtaggctggctt 1809 Query: 95 tccattagatatcgagatttggttcgtttattccgctaatatacaaacaatttaaatatg 154 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1808 tccattagatatcgagatttggttcgtttattccgctaatatacaaacaatttaaatatg 1749 Query: 155 aaatggttgatggttcacacacatcggcaacatcagcaaaattatcgtgggtacaatttt 214 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1748 aaatggttgatggttcacacacatcggcaacatcagcaaaattatcgtgggtacaatttt 1689 Query: 215 gaatcgnnnnnnntcccgtctctatctgttaagcgacgacgcgttcgtatcaaataaatg 274 |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1688 gaatcgaaaaaaatcccgtctctatctgttaagcgacgacgcgttcgtatcaaataaatg 1629 Query: 275 tttgaagaataactatttaatcacgtggcgatcctgctgtcagcctcggcctaggaaatc 334 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1628 tttgaagaataactatttaatcacgtggcgatcctgctgtcagcctcggcctaggaaatc 1569 Query: 335 aaacactcttcatttgttagtcttctcgtttttgcttaacgtcttcttggattctgtcta 394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1568 aaacactcttcatttgttagtcttctcgtttttgcttaacgtcttcttggattctgtcta 1509 Query: 395 aataataaactctgtccccttcatcatgcttcttgacttatgttttgaatatgtatgcag 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1508 aataataaactctgtccccttcatcatgcttcttgacttatgttttgaatatgtatgcag 1449 Query: 455 caaatgaatttagtgggttttcgttcacgtttcaaattaatactcctcgtcctctggtgg 514 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1448 caaatgaatttagtgggttttcgttcacgtttcaaattaatactcctcgtcctctggtgg 1389 Query: 515 tgcatcgtcaggcggcgcaaaaccatcctcagtcgcatataagatgtccaaaatcttttg 574 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1388 tgcatcgtcaggcggcgcaaaaccatcctcagtcgcatataagatgtccaaaatcttttg 1329 Query: 575 tatgatcggatgcgcctcggcgtcatcggcttcttggcaaagaatttcaatatcccgcaa 634 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1328 tatgatcggatgcgcctcggcgtcatcggcttcttggcaaagaatttcaatatcccgcaa 1269 Query: 635 cttagagaagtaaaagtctcgctccttttccaatccctccaggtttatgcgcatatccat 694 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1268 cttagagaagtaaaagtctcgctccttttccaatccctccaggtttatgcgcatatccat 1209 Query: 695 cacctgatttgacatctcttctatttgttga 725 ||||||||||||||||||||||||||||||| Sbjct: 1208 cacctgatttgacatctcttctatttgttga 1178 >BcDNA:LD08743-RB feature: mRNA loc=2R:join(1810094..1810291,1813534..1813686, 1813745..1813890,1815082..1815340,1815604..1815746, 1815801..1815883,1815947..1816019, 1816087..1816941);ID=FBan0003265;gene_id=FBgn0027066;gene _sym=BcDNA:LD08743;sym=CG3265;scaffold=AE003790;len=1910 Length = 1910 Score = 1328 bits (670), Expect = 0.0 Identities = 684/691 (98%) Strand = Plus / Minus Query: 35 ttcttagttacgagtctgtgaacctttcaaaaaagaattttgaaaagggtaggctggctt 94 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1562 ttcttagttacgagtctgtgaacctttcaaaaaagaattttgaaaagggtaggctggctt 1503 Query: 95 tccattagatatcgagatttggttcgtttattccgctaatatacaaacaatttaaatatg 154 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1502 tccattagatatcgagatttggttcgtttattccgctaatatacaaacaatttaaatatg 1443 Query: 155 aaatggttgatggttcacacacatcggcaacatcagcaaaattatcgtgggtacaatttt 214 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1442 aaatggttgatggttcacacacatcggcaacatcagcaaaattatcgtgggtacaatttt 1383 Query: 215 gaatcgnnnnnnntcccgtctctatctgttaagcgacgacgcgttcgtatcaaataaatg 274 |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1382 gaatcgaaaaaaatcccgtctctatctgttaagcgacgacgcgttcgtatcaaataaatg 1323 Query: 275 tttgaagaataactatttaatcacgtggcgatcctgctgtcagcctcggcctaggaaatc 334 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1322 tttgaagaataactatttaatcacgtggcgatcctgctgtcagcctcggcctaggaaatc 1263 Query: 335 aaacactcttcatttgttagtcttctcgtttttgcttaacgtcttcttggattctgtcta 394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1262 aaacactcttcatttgttagtcttctcgtttttgcttaacgtcttcttggattctgtcta 1203 Query: 395 aataataaactctgtccccttcatcatgcttcttgacttatgttttgaatatgtatgcag 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1202 aataataaactctgtccccttcatcatgcttcttgacttatgttttgaatatgtatgcag 1143 Query: 455 caaatgaatttagtgggttttcgttcacgtttcaaattaatactcctcgtcctctggtgg 514 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1142 caaatgaatttagtgggttttcgttcacgtttcaaattaatactcctcgtcctctggtgg 1083 Query: 515 tgcatcgtcaggcggcgcaaaaccatcctcagtcgcatataagatgtccaaaatcttttg 574 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1082 tgcatcgtcaggcggcgcaaaaccatcctcagtcgcatataagatgtccaaaatcttttg 1023 Query: 575 tatgatcggatgcgcctcggcgtcatcggcttcttggcaaagaatttcaatatcccgcaa 634 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1022 tatgatcggatgcgcctcggcgtcatcggcttcttggcaaagaatttcaatatcccgcaa 963 Query: 635 cttagagaagtaaaagtctcgctccttttccaatccctccaggtttatgcgcatatccat 694 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 962 cttagagaagtaaaagtctcgctccttttccaatccctccaggtttatgcgcatatccat 903 Query: 695 cacctgatttgacatctcttctatttgttga 725 ||||||||||||||||||||||||||||||| Sbjct: 902 cacctgatttgacatctcttctatttgttga 872 >BcDNA:LD08743-RA feature: mRNA loc=2R:join(1812986..1813133,1813534..1813686, 1813745..1813890,1815082..1815340,1815604..1815746, 1815801..1815883,1815947..1816019, 1816087..1816941);ID=FBan0003265;gene_id=FBgn0027066;gene _sym=BcDNA:LD08743;sym=CG3265;scaffold=AE003790;len=1860 Length = 1860 Score = 1328 bits (670), Expect = 0.0 Identities = 684/691 (98%) Strand = Plus / Minus Query: 35 ttcttagttacgagtctgtgaacctttcaaaaaagaattttgaaaagggtaggctggctt 94 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1512 ttcttagttacgagtctgtgaacctttcaaaaaagaattttgaaaagggtaggctggctt 1453 Query: 95 tccattagatatcgagatttggttcgtttattccgctaatatacaaacaatttaaatatg 154 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1452 tccattagatatcgagatttggttcgtttattccgctaatatacaaacaatttaaatatg 1393 Query: 155 aaatggttgatggttcacacacatcggcaacatcagcaaaattatcgtgggtacaatttt 214 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1392 aaatggttgatggttcacacacatcggcaacatcagcaaaattatcgtgggtacaatttt 1333 Query: 215 gaatcgnnnnnnntcccgtctctatctgttaagcgacgacgcgttcgtatcaaataaatg 274 |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1332 gaatcgaaaaaaatcccgtctctatctgttaagcgacgacgcgttcgtatcaaataaatg 1273 Query: 275 tttgaagaataactatttaatcacgtggcgatcctgctgtcagcctcggcctaggaaatc 334 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1272 tttgaagaataactatttaatcacgtggcgatcctgctgtcagcctcggcctaggaaatc 1213 Query: 335 aaacactcttcatttgttagtcttctcgtttttgcttaacgtcttcttggattctgtcta 394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1212 aaacactcttcatttgttagtcttctcgtttttgcttaacgtcttcttggattctgtcta 1153 Query: 395 aataataaactctgtccccttcatcatgcttcttgacttatgttttgaatatgtatgcag 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1152 aataataaactctgtccccttcatcatgcttcttgacttatgttttgaatatgtatgcag 1093 Query: 455 caaatgaatttagtgggttttcgttcacgtttcaaattaatactcctcgtcctctggtgg 514 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1092 caaatgaatttagtgggttttcgttcacgtttcaaattaatactcctcgtcctctggtgg 1033 Query: 515 tgcatcgtcaggcggcgcaaaaccatcctcagtcgcatataagatgtccaaaatcttttg 574 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1032 tgcatcgtcaggcggcgcaaaaccatcctcagtcgcatataagatgtccaaaatcttttg 973 Query: 575 tatgatcggatgcgcctcggcgtcatcggcttcttggcaaagaatttcaatatcccgcaa 634 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 972 tatgatcggatgcgcctcggcgtcatcggcttcttggcaaagaatttcaatatcccgcaa 913 Query: 635 cttagagaagtaaaagtctcgctccttttccaatccctccaggtttatgcgcatatccat 694 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 912 cttagagaagtaaaagtctcgctccttttccaatccctccaggtttatgcgcatatccat 853 Query: 695 cacctgatttgacatctcttctatttgttga 725 ||||||||||||||||||||||||||||||| Sbjct: 852 cacctgatttgacatctcttctatttgttga 822 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,210 Number of Sequences: 18737 Number of extensions: 16210 Number of successful extensions: 364 Number of sequences better than 1.0e-100: 5 Number of HSP's better than 0.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 349 Number of HSP's gapped (non-prelim): 10 length of query: 725 length of database: 41,270,998 effective HSP length: 17 effective length of query: 708 effective length of database: 40,952,469 effective search space: 28994348052 effective search space used: 28994348052 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI513664|AI513664 GH26713.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH26713 5, mRNA sequence. (640 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32850-RA feature: mRNA loc=4:join(334685..334918,336132..33624... 1122 0.0 >CG32850-RA feature: mRNA loc=4:join(334685..334918,336132..336248, 339188..341126);ID=FBan0032850;gene_id=FBgn0052850;gene_ sym=CG32850;sym=CG32850;scaffold=AE003844;len=2290 Length = 2290 Score = 1122 bits (566), Expect = 0.0 Identities = 566/566 (100%) Strand = Plus / Plus Query: 75 aaatcaactaactaaattgtttctgtttattatgaaagttgtgtatacatatgtgcattt 134 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 107 aaatcaactaactaaattgtttctgtttattatgaaagttgtgtatacatatgtgcattt 166 Query: 135 tatatacatgcatgcgtacttattaatttaagatttcttggggattggtactaattggta 194 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 167 tatatacatgcatgcgtacttattaatttaagatttcttggggattggtactaattggta 226 Query: 195 ctgtatatttaaatcttcgaaaaacgcatgaaatgggtaattgcttaaaaattagcactt 254 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 227 ctgtatatttaaatcttcgaaaaacgcatgaaatgggtaattgcttaaaaattagcactt 286 Query: 255 cagatgacatttcacttttacgcggcaatgacagtcaaatcagcgggacacagccagtgt 314 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 287 cagatgacatttcacttttacgcggcaatgacagtcaaatcagcgggacacagccagtgt 346 Query: 315 atcatcagggagagcattatcaacgagaattgtacccttccacgtcgtcttcgacaacgc 374 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 347 atcatcagggagagcattatcaacgagaattgtacccttccacgtcgtcttcgacaacgc 406 Query: 375 taacaccatcttctaacaatcgtcaactttccgatgaaaatcaagtgaaaattgcaaagc 434 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 407 taacaccatcttctaacaatcgtcaactttccgatgaaaatcaagtgaaaattgcaaagc 466 Query: 435 gaattggattaatgcagtacttgccaataggaacatacgacgggagctcaaagaaagcac 494 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 467 gaattggattaatgcagtacttgccaataggaacatacgacgggagctcaaagaaagcac 526 Query: 495 gagaatgtgttatctgcatggctgaattttgtgttaatgaagccgtacgttatctacctt 554 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 527 gagaatgtgttatctgcatggctgaattttgtgttaatgaagccgtacgttatctacctt 586 Query: 555 gcatgcatatttatcatgttaattgtatagatgattggttgttgagaagtctaacttgtc 614 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 587 gcatgcatatttatcatgttaattgtatagatgattggttgttgagaagtctaacttgtc 646 Query: 615 ccagttgtttagagcctgttgatgct 640 |||||||||||||||||||||||||| Sbjct: 647 ccagttgtttagagcctgttgatgct 672 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,032 Number of Sequences: 18737 Number of extensions: 12032 Number of successful extensions: 236 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 234 Number of HSP's gapped (non-prelim): 2 length of query: 640 length of database: 41,270,998 effective HSP length: 17 effective length of query: 623 effective length of database: 40,952,469 effective search space: 25513388187 effective search space used: 25513388187 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI514248|AI514248 GH27336.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH27336 5prime, mRNA sequence. (613 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31538-RA feature: mRNA loc=3R:complement(1101391..1103554);ID=... 1207 0.0 >CG31538-RA feature: mRNA loc=3R:complement(1101391..1103554);ID=FBan0031538;gene_ id=FBgn0051538;gene_sym=CG31538;sym=CG31538;scaffold=AE0 03603;len=2164 Length = 2164 Score = 1207 bits (609), Expect = 0.0 Identities = 612/613 (99%) Strand = Plus / Plus Query: 1 ccaaaatagaaaattcgaatttatttattcagtgttttgttggtcttacgagtccgtgaa 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 97 ccaaaatagaaaattcgaatttatttattcagtgttttgttggtcttacgagtccgtgaa 156 Query: 61 atcgagttctttagtccgtgaagaaacgtgcttcgttttcgcaggtttttgctaaattgt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 157 atcgagttctttagtccgtgaagaaacgtgcttcgttttcgcaggtttttgctaaattgt 216 Query: 121 tcgtgtatccattggttcacattatgagtactcatcagtatagcctggggaggctggccc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 217 tcgtgtatccattggttcacattatgagtactcatcagtatagcctggggaggctggccc 276 Query: 181 gccgaggcttcagcctgcggatgaatccgctggccggcacactgcaaaggctttaccaca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 277 gccgaggcttcagcctgcggatgaatccgctggccggcacactgcaaaggctttaccaca 336 Query: 241 cccgtagcaggccatgtgtggcccagagtgtgagccaggtgggtgaacggtccaagccaa 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 337 cccgtagcaggccatgtgtggcccagagtgtgagccaggtgggtgaacggtccaagccaa 396 Query: 301 cgttgcagccctacgacttcgaccgaagccgggtgcgtaaaattgccggcgagaggaaga 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 397 cgttgcagccctacgacttcgaccgaagccgggtgcgtaaaattgccggcgagaggaaga 456 Query: 361 cgctggtcgaccaggtgcggggcatgagcacaagcctgtgacatgccaagttggtgcccc 420 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 457 cgctggtcgaccaggtgcggggcatgagcacaagcctgggacatgccaagttggtgcccc 516 Query: 421 aaaagatgtacggcaagacgaggctgttctcctccggaagcaccctctacagtcgcttgc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 517 aaaagatgtacggcaagacgaggctgttctcctccggaagcaccctctacagtcgcttgc 576 Query: 481 agcatctggaacagcagaacgaggaatattcgagtcgagagtcccagccgacgcacacca 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 577 agcatctggaacagcagaacgaggaatattcgagtcgagagtcccagccgacgcacacca 636 Query: 541 cagcctcattgtcggccacccagcagaggtacaatcaggcggcaggattcggcaagggca 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 637 cagcctcattgtcggccacccagcagaggtacaatcaggcggcaggattcggcaagggca 696 Query: 601 tggccatacagac 613 ||||||||||||| Sbjct: 697 tggccatacagac 709 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,415 Number of Sequences: 18737 Number of extensions: 13415 Number of successful extensions: 208 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 207 Number of HSP's gapped (non-prelim): 1 length of query: 613 length of database: 41,270,998 effective HSP length: 17 effective length of query: 596 effective length of database: 40,952,469 effective search space: 24407671524 effective search space used: 24407671524 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI517101|AI517101 GH27735.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH27735 5prime, mRNA sequence. (701 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG10219-RA feature: mRNA loc=3R:complement(19575864..19576302,19... 1390 0.0 >CG10219-RA feature: mRNA loc=3R:complement(19575864..19576302,19576364..19576551, 19576624..19576739, 19576831..19576975);ID=FBan0010219;gene_id=FBgn0039112;g ene_sym=CG10219;sym=CG10219;scaffold=AE003744;len=888 Length = 888 Score = 1390 bits (701), Expect = 0.0 Identities = 701/701 (100%) Strand = Plus / Plus Query: 1 agcgatagagtttttattttgagctgaaaattctcaatatttacacatcccaacatgtcc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 49 agcgatagagtttttattttgagctgaaaattctcaatatttacacatcccaacatgtcc 108 Query: 61 ctctcgttgcttctgcgtggcgctgtccgttgcaatgccgcaaatcttgttaagtcggct 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 109 ctctcgttgcttctgcgtggcgctgtccgttgcaatgccgcaaatcttgttaagtcggct 168 Query: 121 cgcatcactcccctgaagagctactccaccctggtggccaatgtccagcggaaggcggtg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 169 cgcatcactcccctgaagagctactccaccctggtggccaatgtccagcggaaggcggtg 228 Query: 181 gtccagcccctggccgtggccaagattgtagcgcccgtcgtgcgcgagatctccgtgagt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 229 gtccagcccctggccgtggccaagattgtagcgcccgtcgtgcgcgagatctccgtgagt 288 Query: 241 gcgccccgcatggcttccgctggatccagccacaccctgctctggactgtggagcgaatt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 289 gcgccccgcatggcttccgctggatccagccacaccctgctctggactgtggagcgaatt 348 Query: 301 gtgtccgccggcctactggccgtcattccagctgccttcatagctccatcccaggtattg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 349 gtgtccgccggcctactggccgtcattccagctgccttcatagctccatcccaggtattg 408 Query: 361 gacgccctcatggccatctctgtcgtcatccacacccattggggcgtggaggccatggta 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 409 gacgccctcatggccatctctgtcgtcatccacacccattggggcgtggaggccatggta 468 Query: 421 gttgactacatgcggccatctgtcgttggaaacgtcctgcccaaggtagcccacattgcg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 469 gttgactacatgcggccatctgtcgttggaaacgtcctgcccaaggtagcccacattgcg 528 Query: 481 ctgatcatcatctcggtggccacgctgggcggcctcttctacttcatccaaaatgatgtg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 529 ctgatcatcatctcggtggccacgctgggcggcctcttctacttcatccaaaatgatgtg 588 Query: 541 ggtctggccaatggtatcaagcgcttctgggccatcaagggcaaggatgccgagaaggct 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 589 ggtctggccaatggtatcaagcgcttctgggccatcaagggcaaggatgccgagaaggct 648 Query: 601 taaatgtcaaaggagcaatcagttgatgaaccacgaaacaccagttatttattcatagtt 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 649 taaatgtcaaaggagcaatcagttgatgaaccacgaaacaccagttatttattcatagtt 708 Query: 661 tcgcgataagcattaaataaagaattgtaaaaagtcacagc 701 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 709 tcgcgataagcattaaataaagaattgtaaaaagtcacagc 749 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 18,362 Number of Sequences: 18737 Number of extensions: 18362 Number of successful extensions: 428 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 427 Number of HSP's gapped (non-prelim): 1 length of query: 701 length of database: 41,270,998 effective HSP length: 17 effective length of query: 684 effective length of database: 40,952,469 effective search space: 28011488796 effective search space used: 28011488796 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI517117|AI517117 GH27755.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH27755 5prime, mRNA sequence. (642 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG17272-RA feature: mRNA loc=3R:complement(16649045..16649478,16... 1231 0.0 >CG17272-RA feature: mRNA loc=3R:complement(16649045..16649478,16649542..16649606, 16649674..16649704, 16649832..16649968);ID=FBan0017272;gene_id=FBgn0038830;g ene_sym=CG17272;sym=CG17272;scaffold=AE003732;len=667 Length = 667 Score = 1231 bits (621), Expect = 0.0 Identities = 635/642 (98%) Strand = Plus / Plus Query: 1 ctgctacctgtttgagttctacgcttcgtttatttattaactctatcttattgtttacgg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 15 ctgctacctgtttgagttctacgcttcgtttatttattaactctatcttattgtttacgg 74 Query: 61 tatttatttatggtttagtaagcttaattcaactaattgaacgtatttaaaaactctaaa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 75 tatttatttatggtttagtaagcttaattcaactaattgaacgtatttaaaaactctaaa 134 Query: 121 atggctcgttactttaaagaacaggacattgatgagttccgtgagtgtttttatctgttc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 135 atggctcgttactttaaagaacaggacattgatgagttccgtgagtgtttttatctgttc 194 Query: 181 gcccgttcgggccaaatcaacaatttggacgaactaaccgttattatgcgttctttgggt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 195 gcccgttcgggccaaatcaacaatttggacgaactaaccgttattatgcgttctttgggt 254 Query: 241 ctttcgccgacgatccaagaactggtttcctatctgaagcaaaagaatgggaaaatgagc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 255 ctttcgccgacgatccaagaactggtttcctatctgaagcaaaagaatgggaaaatgagc 314 Query: 301 ttcgccgacttcctggacatcatgcatcagcactccaaggtggagagtttgccggacgag 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 315 ttcgccgacttcctggacatcatgcatcagcactccaaggtggagagtttgccggacgag 374 Query: 361 gtcattgccgcctttaaagcggccgatccgcagaataagggcaccatctcggccagacag 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 375 gtcattgccgcctttaaagcggccgatccgcagaataagggcaccatctcggccagacag 434 Query: 421 ctgcgtaatctacttcaaaactggggagagggcctgtccatgcgcgaagtggacaacatc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 435 ctgcgtaatctacttcaaaactggggagagggcctgtccatgcgcgaagtggacaacatc 494 Query: 481 ttccgggaggccaatgtgaacaacaatagcactgtgcggtatgcagactttgtcaagatt 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 495 ttccgggaggccaatgtgaacaacaatagcactgtgcggtatgcagactttgtcaagatt 554 Query: 541 gcatgcgccccagttcccgactactattagactgcctttaccatnnnnnnncattccagt 600 |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 555 gcatgcgccccagttcccgactactattagactgcctttaccataaaaaaacattccagt 614 Query: 601 aaagtactccaattttcgcacaataaagttggccaaatgtgt 642 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 615 aaagtactccaattttcgcacaataaagttggccaaatgtgt 656 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,690 Number of Sequences: 18737 Number of extensions: 13690 Number of successful extensions: 307 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 305 Number of HSP's gapped (non-prelim): 1 length of query: 642 length of database: 41,270,998 effective HSP length: 17 effective length of query: 625 effective length of database: 40,952,469 effective search space: 25595293125 effective search space used: 25595293125 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI517149|AI517149 GH27794.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH27794 5prime, mRNA sequence. (688 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,806 Number of Sequences: 18737 Number of extensions: 12806 Number of successful extensions: 248 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 248 Number of HSP's gapped (non-prelim): 0 length of query: 688 length of database: 41,270,998 effective HSP length: 17 effective length of query: 671 effective length of database: 40,952,469 effective search space: 27479106699 effective search space used: 27479106699 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI517451|AI517451 GH28401.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH28401 5prime, mRNA sequence. (780 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,773 Number of Sequences: 18737 Number of extensions: 13773 Number of successful extensions: 229 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 229 Number of HSP's gapped (non-prelim): 0 length of query: 780 length of database: 41,270,998 effective HSP length: 17 effective length of query: 763 effective length of database: 40,952,469 effective search space: 31246733847 effective search space used: 31246733847 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI517736|AI517736 GH28790.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH28790 5, mRNA sequence. (609 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,999 Number of Sequences: 18737 Number of extensions: 11999 Number of successful extensions: 261 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 261 Number of HSP's gapped (non-prelim): 0 length of query: 609 length of database: 41,270,998 effective HSP length: 17 effective length of query: 592 effective length of database: 40,952,469 effective search space: 24243861648 effective search space used: 24243861648 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944429|AI944429 bs01c09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs01c09 5', mRNA sequence. (475 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG3800-RA feature: mRNA loc=2R:complement(17978141..17980498);ID... 920 0.0 >CG3800-RA feature: mRNA loc=2R:complement(17978141..17980498);ID=FBan0003800;gene _id=FBgn0034802;gene_sym=CG3800;sym=CG3800;scaffold=AE003 459;len=2358 Length = 2358 Score = 920 bits (464), Expect = 0.0 Identities = 467/468 (99%) Strand = Plus / Plus Query: 8 accactcgactccactcaactccactccatccagctgctgccggcgagccttgggaatta 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1797 accactcgactccactcaactccactccatccagctgctgccggcgagccttgggaatta 1856 Query: 68 tccaggatctaagactgtaagacaggatctgtagacagtaaccagtatcccacccctata 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1857 tccaggatctaagactgtaagacaggatctgtagacagtaaccagtatcccacccctata 1916 Query: 128 ccattaactccatccacatccataccataccacacacccatcagccaagacgcccggcaa 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1917 ccattaactccatccacatccataccataccacacacccatcagccaagacgcctggcaa 1976 Query: 188 gatctctcaagcggggtagcatgctatgtagctcatagctgtggagccaaagggggcagc 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1977 gatctctcaagcggggtagcatgctatgtagctcatagctgtggagccaaagggggcagc 2036 Query: 248 aaacaagaacagagaagcagacaaataacaagaagagaacatcaacaatggtagacatac 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2037 aaacaagaacagagaagcagacaaataacaagaagagaacatcaacaatggtagacatac 2096 Query: 308 acgacgactttgaaaacggaacgcaacgctggagaggatgagctaagcggttaaagaagc 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2097 acgacgactttgaaaacggaacgcaacgctggagaggatgagctaagcggttaaagaagc 2156 Query: 368 agacaagcaagcggcactcagaacactcagtgggcagatgaagaagacaacggcacacac 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2157 agacaagcaagcggcactcagaacactcagtgggcagatgaagaagacaacggcacacac 2216 Query: 428 acaccttcagttcagttcagttggacggacgggacacaaaagatgcga 475 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2217 acaccttcagttcagttcagttggacggacgggacacaaaagatgcga 2264 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,206 Number of Sequences: 18737 Number of extensions: 14206 Number of successful extensions: 282 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 281 Number of HSP's gapped (non-prelim): 1 length of query: 475 length of database: 41,270,998 effective HSP length: 17 effective length of query: 458 effective length of database: 40,952,469 effective search space: 18756230802 effective search space used: 18756230802 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944450|AI944450 bs01e08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs01e08 5', mRNA sequence. (446 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31740-RA feature: mRNA loc=2L:join(17987011..17987181,17987318... 753 0.0 >CG31740-RA feature: mRNA loc=2L:join(17987011..17987181, 17987318..17987785);ID=FBan0031740;gene_id=FBgn0051740;g ene_sym=CG31740;sym=CG31740;scaffold=AE003657;len=639 Length = 639 Score = 753 bits (380), Expect = 0.0 Identities = 396/404 (98%) Strand = Plus / Plus Query: 43 aatatgaaaaattgaacaaaaattctaaattcgtagccaaggattaacttcaacgtattt 102 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 88 aatatgaaaaattgaacaaaaattctaaattcgtagccaaggattaacttcaacgtattt 147 Query: 103 cttcagcaggnnnnnnnntcccagccgtaccttttgagcccctcctgcagattttagaag 162 |||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 148 cttcagcaggaaaaaaaatcccagccgtaccttttgagcccctcctgcagattttagaag 207 Query: 163 agattccagtgtcctttaccaaatccaaactttcaagatggttctgatgctttgctgcag 222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 208 agattccagtgtcctttaccaaatccaaactttcaagatggttctgatgctttgctgcag 267 Query: 223 cttcgatcccttctacgttggaccctgcccacccggctgcctggctcctttgatgggagg 282 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 268 cttcgatcccttctacgttggaccctgcccacccggctgcctggctcctttgatgggagg 327 Query: 283 aactccctattgcggatgtggtccctgtggaggttgctgtagtccttgctgtggtccatg 342 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 328 aactccctattgcggatgtggtccctgtggaggttgctgtagtccttgctgtggtccatg 387 Query: 343 tggtccttgtggtggctgcagctcgtgtccttgcggctggtgaagcgcccgctatcatag 402 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 388 tggtccttgtggtggctgcagctcgtgtccttgcggctggtgaagcgcccgctatcatag 447 Query: 403 gcattaatacggcagcaagcggtaacaagtcaatttaaagatca 446 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 448 gcattaatacggcagcaagcggtaacaagtcaatttaaagatca 491 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9118 Number of Sequences: 18737 Number of extensions: 9118 Number of successful extensions: 684 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 682 Number of HSP's gapped (non-prelim): 2 length of query: 446 length of database: 41,270,998 effective HSP length: 17 effective length of query: 429 effective length of database: 40,952,469 effective search space: 17568609201 effective search space used: 17568609201 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944462|AI944462 bs01f10.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs01f10 5', mRNA sequence. (368 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG3861-RB feature: mRNA loc=X:join(6091005..6091330,6099278..610... 410 e-114 CG3861-RA feature: mRNA loc=X:join(6092657..6092857,6099278..610... 410 e-114 >CG3861-RB feature: mRNA loc=X:join(6091005..6091330,6099278..6100255, 6100368..6101569);ID=FBan0003861;gene_id=FBgn0029869;gene _sym=CG3861;sym=CG3861;scaffold=AE003437;len=2506 Length = 2506 Score = 410 bits (207), Expect = e-114 Identities = 213/215 (99%) Strand = Plus / Plus Query: 89 atgacgacgctgatattgagggagttggagatgtgtagttgaggagaagagcaaccaaat 148 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1867 atgacgacgctgatattgagggagttggagatgtgtagttgaggagaagagcaaccaaat 1926 Query: 149 acgaaccaataggacaaaaacgaaaaccagaagaaaactgcaacacactgcaactgcaaa 208 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1927 acgaaccaataggacaaaaacgaaaaccagaagaaaactgcaacacactgcaactgcaaa 1986 Query: 209 acaataagttggaaataaggcggaaacttatttttagtagtaaaataattaacgaagggc 268 ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct: 1987 acaataagttggaaataaggcagaaacatatttttagtagtaaaataattaacgaagggc 2046 Query: 269 aaccgacaagcaaccacttaattatttgtataagc 303 ||||||||||||||||||||||||||||||||||| Sbjct: 2047 aaccgacaagcaaccacttaattatttgtataagc 2081 >CG3861-RA feature: mRNA loc=X:join(6092657..6092857,6099278..6100255, 6100368..6101569);ID=FBan0003861;gene_id=FBgn0029869;gene _sym=CG3861;sym=CG3861;scaffold=AE003437;len=2381 Length = 2381 Score = 410 bits (207), Expect = e-114 Identities = 213/215 (99%) Strand = Plus / Plus Query: 89 atgacgacgctgatattgagggagttggagatgtgtagttgaggagaagagcaaccaaat 148 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1742 atgacgacgctgatattgagggagttggagatgtgtagttgaggagaagagcaaccaaat 1801 Query: 149 acgaaccaataggacaaaaacgaaaaccagaagaaaactgcaacacactgcaactgcaaa 208 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1802 acgaaccaataggacaaaaacgaaaaccagaagaaaactgcaacacactgcaactgcaaa 1861 Query: 209 acaataagttggaaataaggcggaaacttatttttagtagtaaaataattaacgaagggc 268 ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct: 1862 acaataagttggaaataaggcagaaacatatttttagtagtaaaataattaacgaagggc 1921 Query: 269 aaccgacaagcaaccacttaattatttgtataagc 303 ||||||||||||||||||||||||||||||||||| Sbjct: 1922 aaccgacaagcaaccacttaattatttgtataagc 1956 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5803 Number of Sequences: 18737 Number of extensions: 5803 Number of successful extensions: 479 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 477 Number of HSP's gapped (non-prelim): 2 length of query: 368 length of database: 41,270,998 effective HSP length: 17 effective length of query: 351 effective length of database: 40,952,469 effective search space: 14374316619 effective search space used: 14374316619 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944489|AI944489 bs02a09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs02a09 5', mRNA sequence. (360 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31740-RA feature: mRNA loc=2L:join(17987011..17987181,17987318... 636 0.0 >CG31740-RA feature: mRNA loc=2L:join(17987011..17987181, 17987318..17987785);ID=FBan0031740;gene_id=FBgn0051740;g ene_sym=CG31740;sym=CG31740;scaffold=AE003657;len=639 Length = 639 Score = 636 bits (321), Expect = 0.0 Identities = 343/353 (97%) Strand = Plus / Plus Query: 8 gaaaaatggagcaaaaattctaaattcgtagccaaggattaacttcaacgtatttcttca 67 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 93 gaaaaattgaacaaaaattctaaattcgtagccaaggattaacttcaacgtatttcttca 152 Query: 68 gcaggnnnnnnnntcccagccgtaccttttgagcccctcctgcagattttagaagagatt 127 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 153 gcaggaaaaaaaatcccagccgtaccttttgagcccctcctgcagattttagaagagatt 212 Query: 128 ccagtgtcctttaccaaatccaaactttcaagatggttctgatgctttgctgcagcttcg 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 213 ccagtgtcctttaccaaatccaaactttcaagatggttctgatgctttgctgcagcttcg 272 Query: 188 atcccttctacgttggaccctgcccacccggctgcctggctcctttgatgggaggaactc 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 273 atcccttctacgttggaccctgcccacccggctgcctggctcctttgatgggaggaactc 332 Query: 248 cctattgcggatgtggtccctgtggaggttgctgtagtccttgctgtggtccatgtggtc 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 333 cctattgcggatgtggtccctgtggaggttgctgtagtccttgctgtggtccatgtggtc 392 Query: 308 cttgtggtggctgcagctcgtgtccttgcggctggtgaagcgcccgctatcat 360 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 393 cttgtggtggctgcagctcgtgtccttgcggctggtgaagcgcccgctatcat 445 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8124 Number of Sequences: 18737 Number of extensions: 8124 Number of successful extensions: 650 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 648 Number of HSP's gapped (non-prelim): 2 length of query: 360 length of database: 41,270,998 effective HSP length: 17 effective length of query: 343 effective length of database: 40,952,469 effective search space: 14046696867 effective search space used: 14046696867 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944571|AI944571 bs02b02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs02b02 5', mRNA sequence. (246 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,494 Number of Sequences: 18737 Number of extensions: 10494 Number of successful extensions: 2690 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2690 Number of HSP's gapped (non-prelim): 0 length of query: 246 length of database: 41,270,998 effective HSP length: 16 effective length of query: 230 effective length of database: 40,971,206 effective search space: 9423377380 effective search space used: 9423377380 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944638|AI944638 bs02h11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs02h11 5', mRNA sequence. (440 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32371-RA feature: mRNA loc=3L:complement(7726777..7727881);ID=... 835 0.0 >CG32371-RA feature: mRNA loc=3L:complement(7726777..7727881);ID=FBan0032371;gene_ id=FBgn0052371;gene_sym=CG32371;sym=CG32371;scaffold=AE0 03557;len=1105 Length = 1105 Score = 835 bits (421), Expect = 0.0 Identities = 430/433 (99%) Strand = Plus / Plus Query: 8 cgtacagagtgtctgagaaatcaaaaacatgagtagtgaatgttcgctacactaacaagt 67 |||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 74 cgtacaaaatgtctgagaaatcaaaaacatcagtagtgaatgttcgctacactaacaagt 133 Query: 68 tgtcgagcaattcttcgcgtgcggaaatgctatcctgggtgaataacacgttgaaatcgc 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 134 tgtcgagcaattcttcgcgtgcggaaatgctatcctgggtgaataacacgttgaaatcgc 193 Query: 128 agtttttcaaggtcgaggaattgtgcaccggagcggcatactgccagttaatggacatac 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 194 agtttttcaaggtcgaggaattgtgcaccggagcggcatactgccagttaatggacatac 253 Query: 188 tgtttgcccggtcgatcccgatgcagcgagtcaagtttcgcacaaacgttgagtatgagt 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 254 tgtttgcccggtcgatcccgatgcagcgagtcaagtttcgcacaaacgttgagtatgagt 313 Query: 248 acatccagaatttcaagcttttacagggatgtttcaacaaatttgttgttgataagatca 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 314 acatccagaatttcaagcttttacagggatgtttcaacaaatttgttgttgataagatca 373 Query: 308 ttcccatcgaccggctggtcaagggacgataccaggataacttcgagttccttcagtggt 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 374 ttcccatcgaccggctggtcaagggacgataccaggataacttcgagttccttcagtggt 433 Query: 368 ttcgcaagttcttcgatgccaactatgagagtcgagaatatgatcctgtgatagctcgga 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 434 ttcgcaagttcttcgatgccaactatgagagtcgagaatatgatcctgtgatagctcgga 493 Query: 428 atggagcaatgct 440 ||||||||||||| Sbjct: 494 atggagcaatgct 506 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8192 Number of Sequences: 18737 Number of extensions: 8192 Number of successful extensions: 612 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 610 Number of HSP's gapped (non-prelim): 2 length of query: 440 length of database: 41,270,998 effective HSP length: 17 effective length of query: 423 effective length of database: 40,952,469 effective search space: 17322894387 effective search space used: 17322894387 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944652|AI944652 bs03b02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs03b02 5', mRNA sequence. (369 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31740-RA feature: mRNA loc=2L:join(17987011..17987181,17987318... 601 e-171 >CG31740-RA feature: mRNA loc=2L:join(17987011..17987181, 17987318..17987785);ID=FBan0031740;gene_id=FBgn0051740;g ene_sym=CG31740;sym=CG31740;scaffold=AE003657;len=639 Length = 639 Score = 601 bits (303), Expect = e-171 Identities = 319/327 (97%) Strand = Plus / Plus Query: 43 aatatgaaaaattgaacaaaaattctaaattcgtagccaaggattaacttcaacgtattt 102 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 88 aatatgaaaaattgaacaaaaattctaaattcgtagccaaggattaacttcaacgtattt 147 Query: 103 cttcagcaggnnnnnnnntcccagccgtaccttttgagcccctcctgcagattttagaag 162 |||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 148 cttcagcaggaaaaaaaatcccagccgtaccttttgagcccctcctgcagattttagaag 207 Query: 163 agattccagtgtcctttaccaaatccaaactttcaagatggttctgatgctttgctgcag 222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 208 agattccagtgtcctttaccaaatccaaactttcaagatggttctgatgctttgctgcag 267 Query: 223 cttcgatcccttctacgttggaccctgcccacccggctgcctggctcctttgatgggagg 282 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 268 cttcgatcccttctacgttggaccctgcccacccggctgcctggctcctttgatgggagg 327 Query: 283 aactccctattgcggatgtggtccctgtggaggttgctgtagtccttgctgtggtccatg 342 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 328 aactccctattgcggatgtggtccctgtggaggttgctgtagtccttgctgtggtccatg 387 Query: 343 tggtccttgtggtggctgcagctcgtg 369 ||||||||||||||||||||||||||| Sbjct: 388 tggtccttgtggtggctgcagctcgtg 414 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7917 Number of Sequences: 18737 Number of extensions: 7917 Number of successful extensions: 625 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 622 Number of HSP's gapped (non-prelim): 3 length of query: 369 length of database: 41,270,998 effective HSP length: 17 effective length of query: 352 effective length of database: 40,952,469 effective search space: 14415269088 effective search space used: 14415269088 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944704|AI944704 bs04d08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs04d08 5', mRNA sequence. (534 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31740-RA feature: mRNA loc=2L:join(17987011..17987181,17987318... 496 e-139 >CG31740-RA feature: mRNA loc=2L:join(17987011..17987181, 17987318..17987785);ID=FBan0031740;gene_id=FBgn0051740;g ene_sym=CG31740;sym=CG31740;scaffold=AE003657;len=639 Length = 639 Score = 496 bits (250), Expect = e-139 Identities = 272/282 (96%) Strand = Plus / Plus Query: 253 ttctaaattcgtagccaaggattaacttcaacgtatttcttcagcaggnnnnnnnntccc 312 |||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 110 ttctaaattcgtagccaaggattaacttcaacgtatttcttcagcaggaaaaaaaatccc 169 Query: 313 agccgtaccttttgagcccctcctgcagattttagaagagattccagtgtcctttaccaa 372 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 170 agccgtaccttttgagcccctcctgcagattttagaagagattccagtgtcctttaccaa 229 Query: 373 atccaaactttcaagatggttctgatgctttgctgcagcttcgatcccttctacgttgga 432 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 230 atccaaactttcaagatggttctgatgctttgctgcagcttcgatcccttctacgttgga 289 Query: 433 ccctgcccacccggctgcctggctcctttgatgggaggaactccctattgcggatgtggt 492 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 290 ccctgcccacccggctgcctggctcctttgatgggaggaactccctattgcggatgtggt 349 Query: 493 ccctgtggaagttgctgtaatccttgctgtggtccatgtggt 534 ||||||||| ||||||||| |||||||||||||||||||||| Sbjct: 350 ccctgtggaggttgctgtagtccttgctgtggtccatgtggt 391 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,977 Number of Sequences: 18737 Number of extensions: 10977 Number of successful extensions: 266 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 263 Number of HSP's gapped (non-prelim): 3 length of query: 534 length of database: 41,270,998 effective HSP length: 17 effective length of query: 517 effective length of database: 40,952,469 effective search space: 21172426473 effective search space used: 21172426473 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944794|AI944794 bs05e09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs05e09 5', mRNA sequence. (358 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31740-RA feature: mRNA loc=2L:join(17987011..17987181,17987318... 613 e-175 >CG31740-RA feature: mRNA loc=2L:join(17987011..17987181, 17987318..17987785);ID=FBan0031740;gene_id=FBgn0051740;g ene_sym=CG31740;sym=CG31740;scaffold=AE003657;len=639 Length = 639 Score = 613 bits (309), Expect = e-175 Identities = 325/333 (97%) Strand = Plus / Plus Query: 26 aatatgaaaaattgaacaaaaattctaaattcgtagccaaggattaacttcaacgtattt 85 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 88 aatatgaaaaattgaacaaaaattctaaattcgtagccaaggattaacttcaacgtattt 147 Query: 86 cttcagcaggnnnnnnnntcccagccgtaccttttgagcccctcctgcagattttagaag 145 |||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 148 cttcagcaggaaaaaaaatcccagccgtaccttttgagcccctcctgcagattttagaag 207 Query: 146 agattccagtgtcctttaccaaatccaaactttcaagatggttctgatgctttgctgcag 205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 208 agattccagtgtcctttaccaaatccaaactttcaagatggttctgatgctttgctgcag 267 Query: 206 cttcgatcccttctacgttggaccctgcccacccggctgcctggctcctttgatgggagg 265 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 268 cttcgatcccttctacgttggaccctgcccacccggctgcctggctcctttgatgggagg 327 Query: 266 aactccctattgcggatgtggtccctgtggaggttgctgtagtccttgctgtggtccatg 325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 328 aactccctattgcggatgtggtccctgtggaggttgctgtagtccttgctgtggtccatg 387 Query: 326 tggtccttgtggtggctgcagctcgtgtccttg 358 ||||||||||||||||||||||||||||||||| Sbjct: 388 tggtccttgtggtggctgcagctcgtgtccttg 420 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7771 Number of Sequences: 18737 Number of extensions: 7771 Number of successful extensions: 614 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 612 Number of HSP's gapped (non-prelim): 2 length of query: 358 length of database: 41,270,998 effective HSP length: 17 effective length of query: 341 effective length of database: 40,952,469 effective search space: 13964791929 effective search space used: 13964791929 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944814|AI944814 bs05g05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs05g05 5', mRNA sequence. (347 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6056 Number of Sequences: 18737 Number of extensions: 6056 Number of successful extensions: 429 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 429 Number of HSP's gapped (non-prelim): 0 length of query: 347 length of database: 41,270,998 effective HSP length: 16 effective length of query: 331 effective length of database: 40,971,206 effective search space: 13561469186 effective search space used: 13561469186 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944823|AI944823 bs05h02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs05h02 5', mRNA sequence. (408 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32371-RA feature: mRNA loc=3L:complement(7726777..7727881);ID=... 787 0.0 >CG32371-RA feature: mRNA loc=3L:complement(7726777..7727881);ID=FBan0032371;gene_ id=FBgn0052371;gene_sym=CG32371;sym=CG32371;scaffold=AE0 03557;len=1105 Length = 1105 Score = 787 bits (397), Expect = 0.0 Identities = 400/401 (99%) Strand = Plus / Plus Query: 8 ggcaaatcagagtattcgtcagtagtctaaacattatttaaatttttcgtacaaaatgtc 67 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 27 ggcaaatcagagtattcgtcagtagtccaaacattatttaaatttttcgtacaaaatgtc 86 Query: 68 tgagaaatcaaaaacatcagtagtgaatgttcgctacactaacaagttgtcgagcaattc 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 87 tgagaaatcaaaaacatcagtagtgaatgttcgctacactaacaagttgtcgagcaattc 146 Query: 128 ttcgcgtgcggaaatgctatcctgggtgaataacacgttgaaatcgcagtttttcaaggt 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 147 ttcgcgtgcggaaatgctatcctgggtgaataacacgttgaaatcgcagtttttcaaggt 206 Query: 188 cgaggaattgtgcaccggagcggcatactgccagttaatggacatactgtttgcccggtc 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 207 cgaggaattgtgcaccggagcggcatactgccagttaatggacatactgtttgcccggtc 266 Query: 248 gatcccgatgcagcgagtcaagtttcgcacaaacgttgagtatgagtacatccagaattt 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 267 gatcccgatgcagcgagtcaagtttcgcacaaacgttgagtatgagtacatccagaattt 326 Query: 308 caagcttttacagggatgtttcaacaaatttgttgttgataagatcattcccatcgaccg 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 327 caagcttttacagggatgtttcaacaaatttgttgttgataagatcattcccatcgaccg 386 Query: 368 gctggtcaagggacgataccaggataacttcgagttccttc 408 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 387 gctggtcaagggacgataccaggataacttcgagttccttc 427 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8104 Number of Sequences: 18737 Number of extensions: 8104 Number of successful extensions: 590 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 588 Number of HSP's gapped (non-prelim): 2 length of query: 408 length of database: 41,270,998 effective HSP length: 17 effective length of query: 391 effective length of database: 40,952,469 effective search space: 16012415379 effective search space used: 16012415379 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944936|AI944936 bs07b08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs07b08 5', mRNA sequence. (381 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31740-RA feature: mRNA loc=2L:join(17987011..17987181,17987318... 662 0.0 >CG31740-RA feature: mRNA loc=2L:join(17987011..17987181, 17987318..17987785);ID=FBan0031740;gene_id=FBgn0051740;g ene_sym=CG31740;sym=CG31740;scaffold=AE003657;len=639 Length = 639 Score = 662 bits (334), Expect = 0.0 Identities = 350/358 (97%) Strand = Plus / Plus Query: 24 aatatgaaaaattgaacaaaaattctaaattcgtagccaaggattaacttcaacgtattt 83 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 88 aatatgaaaaattgaacaaaaattctaaattcgtagccaaggattaacttcaacgtattt 147 Query: 84 cttcagcaggnnnnnnnntcccagccgtaccttttgagcccctcctgcagattttagaag 143 |||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 148 cttcagcaggaaaaaaaatcccagccgtaccttttgagcccctcctgcagattttagaag 207 Query: 144 agattccagtgtcctttaccaaatccaaactttcaagatggttctgatgctttgctgcag 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 208 agattccagtgtcctttaccaaatccaaactttcaagatggttctgatgctttgctgcag 267 Query: 204 cttcgatcccttctacgttggaccctgcccacccggctgcctggctcctttgatgggagg 263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 268 cttcgatcccttctacgttggaccctgcccacccggctgcctggctcctttgatgggagg 327 Query: 264 aactccctattgcggatgtggtccctgtggaggttgctgtagtccttgctgtggtccatg 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 328 aactccctattgcggatgtggtccctgtggaggttgctgtagtccttgctgtggtccatg 387 Query: 324 tggtccttgtggtggctgcagctcgtgtccttgcggctggtgaagcgcccgctatcat 381 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 388 tggtccttgtggtggctgcagctcgtgtccttgcggctggtgaagcgcccgctatcat 445 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8340 Number of Sequences: 18737 Number of extensions: 8340 Number of successful extensions: 650 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 648 Number of HSP's gapped (non-prelim): 2 length of query: 381 length of database: 41,270,998 effective HSP length: 17 effective length of query: 364 effective length of database: 40,952,469 effective search space: 14906698716 effective search space used: 14906698716 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944975|AI944975 bs07f01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs07f01 5', mRNA sequence. (355 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31740-RA feature: mRNA loc=2L:join(17987011..17987181,17987318... 575 e-164 >CG31740-RA feature: mRNA loc=2L:join(17987011..17987181, 17987318..17987785);ID=FBan0031740;gene_id=FBgn0051740;g ene_sym=CG31740;sym=CG31740;scaffold=AE003657;len=639 Length = 639 Score = 575 bits (290), Expect = e-164 Identities = 306/314 (97%) Strand = Plus / Plus Query: 42 aatatgaaaaattgaacaaaaattctaaattcgtagccaaggattaacttcaacgtattt 101 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 88 aatatgaaaaattgaacaaaaattctaaattcgtagccaaggattaacttcaacgtattt 147 Query: 102 cttcagcaggnnnnnnnntcccagccgtaccttttgagcccctcctgcagattttagaag 161 |||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 148 cttcagcaggaaaaaaaatcccagccgtaccttttgagcccctcctgcagattttagaag 207 Query: 162 agattccagtgtcctttaccaaatccaaactttcaagatggttctgatgctttgctgcag 221 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 208 agattccagtgtcctttaccaaatccaaactttcaagatggttctgatgctttgctgcag 267 Query: 222 cttcgatcccttctacgttggaccctgcccacccggctgcctggctcctttgatgggagg 281 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 268 cttcgatcccttctacgttggaccctgcccacccggctgcctggctcctttgatgggagg 327 Query: 282 aactccctattgcggatgtggtccctgtggaggttgctgtagtccttgctgtggtccatg 341 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 328 aactccctattgcggatgtggtccctgtggaggttgctgtagtccttgctgtggtccatg 387 Query: 342 tggtccttgtggtg 355 |||||||||||||| Sbjct: 388 tggtccttgtggtg 401 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6886 Number of Sequences: 18737 Number of extensions: 6886 Number of successful extensions: 553 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 551 Number of HSP's gapped (non-prelim): 2 length of query: 355 length of database: 41,270,998 effective HSP length: 17 effective length of query: 338 effective length of database: 40,952,469 effective search space: 13841934522 effective search space used: 13841934522 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945002|AI945002 bs07h06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs07h06 5', mRNA sequence. (367 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31740-RA feature: mRNA loc=2L:join(17987011..17987181,17987318... 692 0.0 >CG31740-RA feature: mRNA loc=2L:join(17987011..17987181, 17987318..17987785);ID=FBan0031740;gene_id=FBgn0051740;g ene_sym=CG31740;sym=CG31740;scaffold=AE003657;len=639 Length = 639 Score = 692 bits (349), Expect = 0.0 Identities = 349/349 (100%) Strand = Plus / Plus Query: 19 tcccagccgtaccttttgagcccctcctgcagattttagaagagattccagtgtccttta 78 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 166 tcccagccgtaccttttgagcccctcctgcagattttagaagagattccagtgtccttta 225 Query: 79 ccaaatccaaactttcaagatggttctgatgctttgctgcagcttcgatcccttctacgt 138 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 226 ccaaatccaaactttcaagatggttctgatgctttgctgcagcttcgatcccttctacgt 285 Query: 139 tggaccctgcccacccggctgcctggctcctttgatgggaggaactccctattgcggatg 198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 286 tggaccctgcccacccggctgcctggctcctttgatgggaggaactccctattgcggatg 345 Query: 199 tggtccctgtggaggttgctgtagtccttgctgtggtccatgtggtccttgtggtggctg 258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 346 tggtccctgtggaggttgctgtagtccttgctgtggtccatgtggtccttgtggtggctg 405 Query: 259 cagctcgtgtccttgcggctggtgaagcgcccgctatcataggcattaatacggcagcaa 318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 406 cagctcgtgtccttgcggctggtgaagcgcccgctatcataggcattaatacggcagcaa 465 Query: 319 gcggtaacaagtcaatttaaagatcaaccttctggaaaagactgctgga 367 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 466 gcggtaacaagtcaatttaaagatcaaccttctggaaaagactgctgga 514 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7885 Number of Sequences: 18737 Number of extensions: 7885 Number of successful extensions: 588 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 587 Number of HSP's gapped (non-prelim): 1 length of query: 367 length of database: 41,270,998 effective HSP length: 17 effective length of query: 350 effective length of database: 40,952,469 effective search space: 14333364150 effective search space used: 14333364150 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945074|AI945074 bs08f11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs08f11 5', mRNA sequence. (387 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31008-RA feature: mRNA loc=3R:complement(26804565..26805094);I... 745 0.0 >CG31008-RA feature: mRNA loc=3R:complement(26804565..26805094);ID=FBan0031008;gen e_id=FBgn0051008;gene_sym=CG31008;sym=CG31008;scaffold=A E003776;len=530 Length = 530 Score = 745 bits (376), Expect = 0.0 Identities = 379/380 (99%) Strand = Plus / Plus Query: 8 ttctgctcggcttaaaatatacataaatttaaagcctggaaaaggggagaaaagatgcca 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 37 ttctgctcggcttaaaatatacataaatttaaagcctggaaaaggggagaaaagatgcca 96 Query: 68 cgcaaacagagaagtgcttcggtcaaagcaggctctacaaactatatgcctgcggtggtg 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 97 cgcaaacagagaagtgcttcggtcaaagcaggctctacaaactatatgcctgcggtggtg 156 Query: 128 cccaccgtcacgaattccgaaatggtcttcaaggaagcggctgcccacgcagtgggcgtg 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 157 cccaccgtcacgaattccgaaatggtcttcaaggaagcggctgcccacgcagtgggcgtg 216 Query: 188 gcagcaggatcagtcgtgggtcatgccatcggatcaggaataacggggctattcacgcgg 247 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 217 gcagcaggatcagtcgtgggtcatgccatcggatcaggaataacggggctattcaggcgg 276 Query: 248 cgtgaccagcagccgcaccacagcgatttagtcgaagaaggtccttgcgccaaggaaatg 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 277 cgtgaccagcagccgcaccacagcgatttagtcgaagaaggtccttgcgccaaggaaatg 336 Query: 308 aaggagttcttgaagtgcaccgaggacaatgacgatctcagtgtgtgcaaggagttcaac 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 337 aaggagttcttgaagtgcaccgaggacaatgacgatctcagtgtgtgcaaggagttcaac 396 Query: 368 gatgctgtgcgacgatgcca 387 |||||||||||||||||||| Sbjct: 397 gatgctgtgcgacgatgcca 416 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,662 Number of Sequences: 18737 Number of extensions: 11662 Number of successful extensions: 1078 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1077 Number of HSP's gapped (non-prelim): 1 length of query: 387 length of database: 41,270,998 effective HSP length: 17 effective length of query: 370 effective length of database: 40,952,469 effective search space: 15152413530 effective search space used: 15152413530 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945090|AI945090 bs08h03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs08h03 5', mRNA sequence. (363 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31740-RA feature: mRNA loc=2L:join(17987011..17987181,17987318... 553 e-157 >CG31740-RA feature: mRNA loc=2L:join(17987011..17987181, 17987318..17987785);ID=FBan0031740;gene_id=FBgn0051740;g ene_sym=CG31740;sym=CG31740;scaffold=AE003657;len=639 Length = 639 Score = 553 bits (279), Expect = e-157 Identities = 295/303 (97%) Strand = Plus / Plus Query: 61 tctaaattcgtagccaaggattaacttcaacgtatttcttcagcaggnnnnnnnntccca 120 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 111 tctaaattcgtagccaaggattaacttcaacgtatttcttcagcaggaaaaaaaatccca 170 Query: 121 gccgtaccttttgagcccctcctgcagattttagaagagattccagtgtcctttaccaaa 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 171 gccgtaccttttgagcccctcctgcagattttagaagagattccagtgtcctttaccaaa 230 Query: 181 tccaaactttcaagatggttctgatgctttgctgcagcttcgatcccttctacgttggac 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 231 tccaaactttcaagatggttctgatgctttgctgcagcttcgatcccttctacgttggac 290 Query: 241 cctgcccacccggctgcctggctcctttgatgggaggaactccctattgcggatgtggtc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 291 cctgcccacccggctgcctggctcctttgatgggaggaactccctattgcggatgtggtc 350 Query: 301 cctgtggaggttgctgtagtccttgctgtggtccatgtggtccttgtggtggctgcagct 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 351 cctgtggaggttgctgtagtccttgctgtggtccatgtggtccttgtggtggctgcagct 410 Query: 361 cgt 363 ||| Sbjct: 411 cgt 413 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6973 Number of Sequences: 18737 Number of extensions: 6973 Number of successful extensions: 551 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 549 Number of HSP's gapped (non-prelim): 2 length of query: 363 length of database: 41,270,998 effective HSP length: 17 effective length of query: 346 effective length of database: 40,952,469 effective search space: 14169554274 effective search space used: 14169554274 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945121|AI945121 bs09c02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs09c02 5', mRNA sequence. (296 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31538-RA feature: mRNA loc=3R:complement(1101391..1103554);ID=... 557 e-158 >CG31538-RA feature: mRNA loc=3R:complement(1101391..1103554);ID=FBan0031538;gene_ id=FBgn0051538;gene_sym=CG31538;sym=CG31538;scaffold=AE0 03603;len=2164 Length = 2164 Score = 557 bits (281), Expect = e-158 Identities = 287/289 (99%) Strand = Plus / Plus Query: 8 cagtgttttgttggtcttacgagtccgtgaaatcgagttctttagtccgtgaagaaacgt 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 126 cagtgttttgttggtcttacgagtccgtgaaatcgagttctttagtccgtgaagaaacgt 185 Query: 68 gcttcgttttcgcaggtttttgctaaattgttcgtgtatccattggttcacattatgagt 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 186 gcttcgttttcgcaggtttttgctaaattgttcgtgtatccattggttcacattatgagt 245 Query: 128 actcatcagtatagcctggggaggctggcccgccgaggcttcagcctgcggatgaatccg 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 246 actcatcagtatagcctggggaggctggcccgccgaggcttcagcctgcggatgaatccg 305 Query: 188 ctggccggcacactgcaaaggctttaccacacccgtagcaggccatgtgtggcccatagt 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 306 ctggccggcacactgcaaaggctttaccacacccgtagcaggccatgtgtggcccagagt 365 Query: 248 gtgagccatgtgggtgaacggtccaagccaacgttgcagccctacgact 296 |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 366 gtgagccaggtgggtgaacggtccaagccaacgttgcagccctacgact 414 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4967 Number of Sequences: 18737 Number of extensions: 4967 Number of successful extensions: 334 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 333 Number of HSP's gapped (non-prelim): 1 length of query: 296 length of database: 41,270,998 effective HSP length: 16 effective length of query: 280 effective length of database: 40,971,206 effective search space: 11471937680 effective search space used: 11471937680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945146|AI945146 bs09e04.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs09e04 5', mRNA sequence. (345 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31740-RA feature: mRNA loc=2L:join(17987011..17987181,17987318... 529 e-150 >CG31740-RA feature: mRNA loc=2L:join(17987011..17987181, 17987318..17987785);ID=FBan0031740;gene_id=FBgn0051740;g ene_sym=CG31740;sym=CG31740;scaffold=AE003657;len=639 Length = 639 Score = 529 bits (267), Expect = e-150 Identities = 283/291 (97%) Strand = Plus / Plus Query: 55 tctaaattcgtagccaaggattaacttcaacgtatttcttcagcaggnnnnnnnntccca 114 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 111 tctaaattcgtagccaaggattaacttcaacgtatttcttcagcaggaaaaaaaatccca 170 Query: 115 gccgtaccttttgagcccctcctgcagattttagaagagattccagtgtcctttaccaaa 174 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 171 gccgtaccttttgagcccctcctgcagattttagaagagattccagtgtcctttaccaaa 230 Query: 175 tccaaactttcaagatggttctgatgctttgctgcagcttcgatcccttctacgttggac 234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 231 tccaaactttcaagatggttctgatgctttgctgcagcttcgatcccttctacgttggac 290 Query: 235 cctgcccacccggctgcctggctcctttgatgggaggaactccctattgcggatgtggtc 294 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 291 cctgcccacccggctgcctggctcctttgatgggaggaactccctattgcggatgtggtc 350 Query: 295 cctgtggaggttgctgtagtccttgctgtggtccatgtggtccttgtggtg 345 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 351 cctgtggaggttgctgtagtccttgctgtggtccatgtggtccttgtggtg 401 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6064 Number of Sequences: 18737 Number of extensions: 6064 Number of successful extensions: 486 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 484 Number of HSP's gapped (non-prelim): 2 length of query: 345 length of database: 41,270,998 effective HSP length: 16 effective length of query: 329 effective length of database: 40,971,206 effective search space: 13479526774 effective search space used: 13479526774 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945183|AI945183 bs09h09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs09h09 5', mRNA sequence. (369 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31740-RA feature: mRNA loc=2L:join(17987011..17987181,17987318... 601 e-171 >CG31740-RA feature: mRNA loc=2L:join(17987011..17987181, 17987318..17987785);ID=FBan0031740;gene_id=FBgn0051740;g ene_sym=CG31740;sym=CG31740;scaffold=AE003657;len=639 Length = 639 Score = 601 bits (303), Expect = e-171 Identities = 319/327 (97%) Strand = Plus / Plus Query: 43 aatatgaaaaattgaacaaaaattctaaattcgtagccaaggattaacttcaacgtattt 102 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 88 aatatgaaaaattgaacaaaaattctaaattcgtagccaaggattaacttcaacgtattt 147 Query: 103 cttcagcaggnnnnnnnntcccagccgtaccttttgagcccctcctgcagattttagaag 162 |||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 148 cttcagcaggaaaaaaaatcccagccgtaccttttgagcccctcctgcagattttagaag 207 Query: 163 agattccagtgtcctttaccaaatccaaactttcaagatggttctgatgctttgctgcag 222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 208 agattccagtgtcctttaccaaatccaaactttcaagatggttctgatgctttgctgcag 267 Query: 223 cttcgatcccttctacgttggaccctgcccacccggctgcctggctcctttgatgggagg 282 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 268 cttcgatcccttctacgttggaccctgcccacccggctgcctggctcctttgatgggagg 327 Query: 283 aactccctattgcggatgtggtccctgtggaggttgctgtagtccttgctgtggtccatg 342 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 328 aactccctattgcggatgtggtccctgtggaggttgctgtagtccttgctgtggtccatg 387 Query: 343 tggtccttgtggtggctgcagctcgtg 369 ||||||||||||||||||||||||||| Sbjct: 388 tggtccttgtggtggctgcagctcgtg 414 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7820 Number of Sequences: 18737 Number of extensions: 7820 Number of successful extensions: 617 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 614 Number of HSP's gapped (non-prelim): 3 length of query: 369 length of database: 41,270,998 effective HSP length: 17 effective length of query: 352 effective length of database: 40,952,469 effective search space: 14415269088 effective search space used: 14415269088 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945231|AI945231 bs10e01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs10e01 5', mRNA sequence. (475 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31740-RA feature: mRNA loc=2L:join(17987011..17987181,17987318... 789 0.0 >CG31740-RA feature: mRNA loc=2L:join(17987011..17987181, 17987318..17987785);ID=FBan0031740;gene_id=FBgn0051740;g ene_sym=CG31740;sym=CG31740;scaffold=AE003657;len=639 Length = 639 Score = 789 bits (398), Expect = 0.0 Identities = 414/422 (98%) Strand = Plus / Plus Query: 54 tctaaattcgtagccaaggattaacttcaacgtatttcttcagcaggnnnnnnnntccca 113 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 111 tctaaattcgtagccaaggattaacttcaacgtatttcttcagcaggaaaaaaaatccca 170 Query: 114 gccgtaccttttgagcccctcctgcagattttagaagagattccagtgtcctttaccaaa 173 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 171 gccgtaccttttgagcccctcctgcagattttagaagagattccagtgtcctttaccaaa 230 Query: 174 tccaaactttcaagatggttctgatgctttgctgcagcttcgatcccttctacgttggac 233 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 231 tccaaactttcaagatggttctgatgctttgctgcagcttcgatcccttctacgttggac 290 Query: 234 cctgcccacccggctgcctggctcctttgatgggaggaactccctattgcggatgtggtc 293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 291 cctgcccacccggctgcctggctcctttgatgggaggaactccctattgcggatgtggtc 350 Query: 294 cctgtggaggttgctgtagtccttgctgtggtccatgtggtccttgtggtggctgcagct 353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 351 cctgtggaggttgctgtagtccttgctgtggtccatgtggtccttgtggtggctgcagct 410 Query: 354 cgtgtccttgcggctggtgaagcgcccgctatcataggcattaatacggcagcaagcggt 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 411 cgtgtccttgcggctggtgaagcgcccgctatcataggcattaatacggcagcaagcggt 470 Query: 414 aacaagtcaatttaaagatcaaccttctggaaaagactgctggagaaatatgttgctgtt 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 471 aacaagtcaatttaaagatcaaccttctggaaaagactgctggagaaatatgttgctgtt 530 Query: 474 cg 475 || Sbjct: 531 cg 532 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9713 Number of Sequences: 18737 Number of extensions: 9713 Number of successful extensions: 178 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 176 Number of HSP's gapped (non-prelim): 2 length of query: 475 length of database: 41,270,998 effective HSP length: 17 effective length of query: 458 effective length of database: 40,952,469 effective search space: 18756230802 effective search space used: 18756230802 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945350|AI945350 bs11g08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs11g08 5', mRNA sequence. (381 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CR32657-RA feature: ncRNA loc=X:join(11817871..11817936,11818011... 688 0.0 >CR32657-RA feature: ncRNA loc=X:join(11817871..11817936,11818011..11818099, 11818158..11818355);ID=FBan0032657;gene_id=FBgn0052657;g ene_sym=CR32657;sym=CR32657;type=ncRNA;scaffold=AE003488 ;len=353 Length = 353 Score = 688 bits (347), Expect = 0.0 Identities = 347/347 (100%) Strand = Plus / Plus Query: 8 ccagagcacaactcgtttcgtaacaaaaaatgtaaaaatttccaaattattgtgtaattg 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7 ccagagcacaactcgtttcgtaacaaaaaatgtaaaaatttccaaattattgtgtaattg 66 Query: 68 agtttcacccttttgataacttaaatactcgccattgctttttgtaaagcaatggcaagt 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 67 agtttcacccttttgataacttaaatactcgccattgctttttgtaaagcaatggcaagt 126 Query: 128 ggttttatagctccggcaacacgaaaaaacacctgacaattccatgactggactacacta 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 127 ggttttatagctccggcaacacgaaaaaacacctgacaattccatgactggactacacta 186 Query: 188 attacaatacaatcgaatcgatggaaccggtcccgttggacgagtagcttgcatcgattc 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 187 attacaatacaatcgaatcgatggaaccggtcccgttggacgagtagcttgcatcgattc 246 Query: 248 taacatgtgatacacaaatcggctaaaaactacatactaatatcatatatgggtttatat 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 247 taacatgtgatacacaaatcggctaaaaactacatactaatatcatatatgggtttatat 306 Query: 308 ggcttaatgtgcgcttatatggattaaaaataaaatattgttaaatc 354 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 307 ggcttaatgtgcgcttatatggattaaaaataaaatattgttaaatc 353 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8102 Number of Sequences: 18737 Number of extensions: 8102 Number of successful extensions: 708 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 707 Number of HSP's gapped (non-prelim): 1 length of query: 381 length of database: 41,270,998 effective HSP length: 17 effective length of query: 364 effective length of database: 40,952,469 effective search space: 14906698716 effective search space used: 14906698716 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945503|AI945503 bs13f03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs13f03 5', mRNA sequence. (545 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31740-RA feature: mRNA loc=2L:join(17987011..17987181,17987318... 932 0.0 >CG31740-RA feature: mRNA loc=2L:join(17987011..17987181, 17987318..17987785);ID=FBan0031740;gene_id=FBgn0051740;g ene_sym=CG31740;sym=CG31740;scaffold=AE003657;len=639 Length = 639 Score = 932 bits (470), Expect = 0.0 Identities = 486/494 (98%) Strand = Plus / Plus Query: 52 tctaaattcgtagccaaggattaacttcaacgtatttcttcagcaggnnnnnnnntccca 111 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 111 tctaaattcgtagccaaggattaacttcaacgtatttcttcagcaggaaaaaaaatccca 170 Query: 112 gccgtaccttttgagcccctcctgcagattttagaagagattccagtgtcctttaccaaa 171 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 171 gccgtaccttttgagcccctcctgcagattttagaagagattccagtgtcctttaccaaa 230 Query: 172 tccaaactttcaagatggttctgatgctttgctgcagcttcgatcccttctacgttggac 231 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 231 tccaaactttcaagatggttctgatgctttgctgcagcttcgatcccttctacgttggac 290 Query: 232 cctgcccacccggctgcctggctcctttgatgggaggaactccctattgcggatgtggtc 291 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 291 cctgcccacccggctgcctggctcctttgatgggaggaactccctattgcggatgtggtc 350 Query: 292 cctgtggaggttgctgtagtccttgctgtggtccatgtggtccttgtggtggctgcagct 351 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 351 cctgtggaggttgctgtagtccttgctgtggtccatgtggtccttgtggtggctgcagct 410 Query: 352 cgtgtccttgcggctggtgaagcgcccgctatcataggcattaatacggcagcaagcggt 411 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 411 cgtgtccttgcggctggtgaagcgcccgctatcataggcattaatacggcagcaagcggt 470 Query: 412 aacaagtcaatttaaagatcaaccttctggaaaagactgctggagaaatatgttgctgtt 471 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 471 aacaagtcaatttaaagatcaaccttctggaaaagactgctggagaaatatgttgctgtt 530 Query: 472 cgaattcctttttgccttggccggggctaaaccaactaagctctcgtatacataaagaat 531 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 531 cgaattcctttttgccttggccggggctaaaccaactaagctctcgtatacataaagaat 590 Query: 532 ttttattataagct 545 |||||||||||||| Sbjct: 591 ttttattataagct 604 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,347 Number of Sequences: 18737 Number of extensions: 11347 Number of successful extensions: 212 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 210 Number of HSP's gapped (non-prelim): 2 length of query: 545 length of database: 41,270,998 effective HSP length: 17 effective length of query: 528 effective length of database: 40,952,469 effective search space: 21622903632 effective search space used: 21622903632 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945562|AI945562 bs14c06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs14c06 5', mRNA sequence. (329 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31740-RA feature: mRNA loc=2L:join(17987011..17987181,17987318... 595 e-170 >CG31740-RA feature: mRNA loc=2L:join(17987011..17987181, 17987318..17987785);ID=FBan0031740;gene_id=FBgn0051740;g ene_sym=CG31740;sym=CG31740;scaffold=AE003657;len=639 Length = 639 Score = 595 bits (300), Expect = e-170 Identities = 316/324 (97%) Strand = Plus / Plus Query: 6 agccaaggattaacttcaacgtatttcttcagcaggnnnnnnnntcccagccgtaccttt 65 |||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 122 agccaaggattaacttcaacgtatttcttcagcaggaaaaaaaatcccagccgtaccttt 181 Query: 66 tgagcccctcctgcagattttagaagagattccagtgtcctttaccaaatccaaactttc 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 182 tgagcccctcctgcagattttagaagagattccagtgtcctttaccaaatccaaactttc 241 Query: 126 aagatggttctgatgctttgctgcagcttcgatcccttctacgttggaccctgcccaccc 185 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 242 aagatggttctgatgctttgctgcagcttcgatcccttctacgttggaccctgcccaccc 301 Query: 186 ggctgcctggctcctttgatgggaggaactccctattgcggatgtggtccctgtggaggt 245 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 302 ggctgcctggctcctttgatgggaggaactccctattgcggatgtggtccctgtggaggt 361 Query: 246 tgctgtagtccttgctgtggtccatgtggtccttgtggtggctgcagctcgtgtccttgc 305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 362 tgctgtagtccttgctgtggtccatgtggtccttgtggtggctgcagctcgtgtccttgc 421 Query: 306 ggctggtgaagcgcccgctatcat 329 |||||||||||||||||||||||| Sbjct: 422 ggctggtgaagcgcccgctatcat 445 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7465 Number of Sequences: 18737 Number of extensions: 7465 Number of successful extensions: 564 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 562 Number of HSP's gapped (non-prelim): 2 length of query: 329 length of database: 41,270,998 effective HSP length: 16 effective length of query: 313 effective length of database: 40,971,206 effective search space: 12823987478 effective search space used: 12823987478 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945636|AI945636 bs15a09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs15a09 5', mRNA sequence. (427 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31740-RA feature: mRNA loc=2L:join(17987011..17987181,17987318... 712 0.0 >CG31740-RA feature: mRNA loc=2L:join(17987011..17987181, 17987318..17987785);ID=FBan0031740;gene_id=FBgn0051740;g ene_sym=CG31740;sym=CG31740;scaffold=AE003657;len=639 Length = 639 Score = 712 bits (359), Expect = 0.0 Identities = 375/383 (97%) Strand = Plus / Plus Query: 45 aatatgaaaaattgaacaaaaattctaaattcgtagccaaggattaacttcaacgtattt 104 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 88 aatatgaaaaattgaacaaaaattctaaattcgtagccaaggattaacttcaacgtattt 147 Query: 105 cttcagcaggnnnnnnnntcccagccgtaccttttgagcccctcctgcagattttagaag 164 |||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 148 cttcagcaggaaaaaaaatcccagccgtaccttttgagcccctcctgcagattttagaag 207 Query: 165 agattccagtgtcctttaccaaatccaaactttcaagatggttctgatgctttgctgcag 224 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 208 agattccagtgtcctttaccaaatccaaactttcaagatggttctgatgctttgctgcag 267 Query: 225 cttcgatcccttctacgttggaccctgcccacccggctgcctggctcctttgatgggagg 284 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 268 cttcgatcccttctacgttggaccctgcccacccggctgcctggctcctttgatgggagg 327 Query: 285 aactccctattgcggatgtggtccctgtggaggttgctgtagtccttgctgtggtccatg 344 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 328 aactccctattgcggatgtggtccctgtggaggttgctgtagtccttgctgtggtccatg 387 Query: 345 tggtccttgtggtggctgcagctcgtgtccttgcggctggtgaagcgcccgctatcatag 404 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 388 tggtccttgtggtggctgcagctcgtgtccttgcggctggtgaagcgcccgctatcatag 447 Query: 405 gcattaatacggcagcaagcggt 427 ||||||||||||||||||||||| Sbjct: 448 gcattaatacggcagcaagcggt 470 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9400 Number of Sequences: 18737 Number of extensions: 9400 Number of successful extensions: 698 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 695 Number of HSP's gapped (non-prelim): 3 length of query: 427 length of database: 41,270,998 effective HSP length: 17 effective length of query: 410 effective length of database: 40,952,469 effective search space: 16790512290 effective search space used: 16790512290 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945675|AI945675 bs15e09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs15e09 5', mRNA sequence. (440 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31740-RA feature: mRNA loc=2L:join(17987011..17987181,17987318... 710 0.0 >CG31740-RA feature: mRNA loc=2L:join(17987011..17987181, 17987318..17987785);ID=FBan0031740;gene_id=FBgn0051740;g ene_sym=CG31740;sym=CG31740;scaffold=AE003657;len=639 Length = 639 Score = 710 bits (358), Expect = 0.0 Identities = 374/382 (97%) Strand = Plus / Plus Query: 59 tctaaattcgtagccaaggattaacttcaacgtatttcttcagcaggnnnnnnnntccca 118 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 111 tctaaattcgtagccaaggattaacttcaacgtatttcttcagcaggaaaaaaaatccca 170 Query: 119 gccgtaccttttgagcccctcctgcagattttagaagagattccagtgtcctttaccaaa 178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 171 gccgtaccttttgagcccctcctgcagattttagaagagattccagtgtcctttaccaaa 230 Query: 179 tccaaactttcaagatggttctgatgctttgctgcagcttcgatcccttctacgttggac 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 231 tccaaactttcaagatggttctgatgctttgctgcagcttcgatcccttctacgttggac 290 Query: 239 cctgcccacccggctgcctggctcctttgatgggaggaactccctattgcggatgtggtc 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 291 cctgcccacccggctgcctggctcctttgatgggaggaactccctattgcggatgtggtc 350 Query: 299 cctgtggaggttgctgtagtccttgctgtggtccatgtggtccttgtggtggctgcagct 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 351 cctgtggaggttgctgtagtccttgctgtggtccatgtggtccttgtggtggctgcagct 410 Query: 359 cgtgtccttgcggctggtgaagcgcccgctatcataggcattaatacggcagcaagcggt 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 411 cgtgtccttgcggctggtgaagcgcccgctatcataggcattaatacggcagcaagcggt 470 Query: 419 aacaagtcaatttaaagatcaa 440 |||||||||||||||||||||| Sbjct: 471 aacaagtcaatttaaagatcaa 492 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8300 Number of Sequences: 18737 Number of extensions: 8300 Number of successful extensions: 616 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 614 Number of HSP's gapped (non-prelim): 2 length of query: 440 length of database: 41,270,998 effective HSP length: 17 effective length of query: 423 effective length of database: 40,952,469 effective search space: 17322894387 effective search space used: 17322894387 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945729|AI945729 bs16b10.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs16b10 5', mRNA sequence. (407 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31740-RA feature: mRNA loc=2L:join(17987011..17987181,17987318... 644 0.0 >CG31740-RA feature: mRNA loc=2L:join(17987011..17987181, 17987318..17987785);ID=FBan0031740;gene_id=FBgn0051740;g ene_sym=CG31740;sym=CG31740;scaffold=AE003657;len=639 Length = 639 Score = 644 bits (325), Expect = 0.0 Identities = 341/349 (97%) Strand = Plus / Plus Query: 59 tctaaattcgtagccaaggattaacttcaacgtatttcttcagcaggnnnnnnnntccca 118 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 111 tctaaattcgtagccaaggattaacttcaacgtatttcttcagcaggaaaaaaaatccca 170 Query: 119 gccgtaccttttgagcccctcctgcagattttagaagagattccagtgtcctttaccaaa 178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 171 gccgtaccttttgagcccctcctgcagattttagaagagattccagtgtcctttaccaaa 230 Query: 179 tccaaactttcaagatggttctgatgctttgctgcagcttcgatcccttctacgttggac 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 231 tccaaactttcaagatggttctgatgctttgctgcagcttcgatcccttctacgttggac 290 Query: 239 cctgcccacccggctgcctggctcctttgatgggaggaactccctattgcggatgtggtc 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 291 cctgcccacccggctgcctggctcctttgatgggaggaactccctattgcggatgtggtc 350 Query: 299 cctgtggaggttgctgtagtccttgctgtggtccatgtggtccttgtggtggctgcagct 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 351 cctgtggaggttgctgtagtccttgctgtggtccatgtggtccttgtggtggctgcagct 410 Query: 359 cgtgtccttgcggctggtgaagcgcccgctatcataggcattaatacgg 407 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 411 cgtgtccttgcggctggtgaagcgcccgctatcataggcattaatacgg 459 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7660 Number of Sequences: 18737 Number of extensions: 7660 Number of successful extensions: 586 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 584 Number of HSP's gapped (non-prelim): 2 length of query: 407 length of database: 41,270,998 effective HSP length: 17 effective length of query: 390 effective length of database: 40,952,469 effective search space: 15971462910 effective search space used: 15971462910 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945828|AI945828 bs17c11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs17c11 5', mRNA sequence. (386 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4753 Number of Sequences: 18737 Number of extensions: 4753 Number of successful extensions: 291 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 291 Number of HSP's gapped (non-prelim): 0 length of query: 386 length of database: 41,270,998 effective HSP length: 17 effective length of query: 369 effective length of database: 40,952,469 effective search space: 15111461061 effective search space used: 15111461061 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945933|AI945933 bs18e04.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs18e04 5', mRNA sequence. (404 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31740-RA feature: mRNA loc=2L:join(17987011..17987181,17987318... 638 0.0 >CG31740-RA feature: mRNA loc=2L:join(17987011..17987181, 17987318..17987785);ID=FBan0031740;gene_id=FBgn0051740;g ene_sym=CG31740;sym=CG31740;scaffold=AE003657;len=639 Length = 639 Score = 638 bits (322), Expect = 0.0 Identities = 338/346 (97%) Strand = Plus / Plus Query: 59 tctaaattcgtagccaaggattaacttcaacgtatttcttcagcaggnnnnnnnntccca 118 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 111 tctaaattcgtagccaaggattaacttcaacgtatttcttcagcaggaaaaaaaatccca 170 Query: 119 gccgtaccttttgagcccctcctgcagattttagaagagattccagtgtcctttaccaaa 178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 171 gccgtaccttttgagcccctcctgcagattttagaagagattccagtgtcctttaccaaa 230 Query: 179 tccaaactttcaagatggttctgatgctttgctgcagcttcgatcccttctacgttggac 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 231 tccaaactttcaagatggttctgatgctttgctgcagcttcgatcccttctacgttggac 290 Query: 239 cctgcccacccggctgcctggctcctttgatgggaggaactccctattgcggatgtggtc 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 291 cctgcccacccggctgcctggctcctttgatgggaggaactccctattgcggatgtggtc 350 Query: 299 cctgtggaggttgctgtagtccttgctgtggtccatgtggtccttgtggtggctgcagct 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 351 cctgtggaggttgctgtagtccttgctgtggtccatgtggtccttgtggtggctgcagct 410 Query: 359 cgtgtccttgcggctggtgaagcgcccgctatcataggcattaata 404 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 411 cgtgtccttgcggctggtgaagcgcccgctatcataggcattaata 456 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7644 Number of Sequences: 18737 Number of extensions: 7644 Number of successful extensions: 586 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 584 Number of HSP's gapped (non-prelim): 2 length of query: 404 length of database: 41,270,998 effective HSP length: 17 effective length of query: 387 effective length of database: 40,952,469 effective search space: 15848605503 effective search space used: 15848605503 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945958|AI945958 bs18g09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs18g09 5', mRNA sequence. (475 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31538-RA feature: mRNA loc=3R:complement(1101391..1103554);ID=... 922 0.0 >CG31538-RA feature: mRNA loc=3R:complement(1101391..1103554);ID=FBan0031538;gene_ id=FBgn0051538;gene_sym=CG31538;sym=CG31538;scaffold=AE0 03603;len=2164 Length = 2164 Score = 922 bits (465), Expect = 0.0 Identities = 467/468 (99%) Strand = Plus / Plus Query: 8 tcgtttcgtacagagctctccaaaatagaaaattcgaatttatttattcagtgttttgtt 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 78 tcgtttcgtacagagctctccaaaatagaaaattcgaatttatttattcagtgttttgtt 137 Query: 68 ggtcttacgagtccgtgaaatcgagttctttagtccgtgaagaaacgtgcttcgttttcg 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 138 ggtcttacgagtccgtgaaatcgagttctttagtccgtgaagaaacgtgcttcgttttcg 197 Query: 128 caggtttttgctaaattgttcgtgtatccattggttcacattatgagtactcatcagtat 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 198 caggtttttgctaaattgttcgtgtatccattggttcacattatgagtactcatcagtat 257 Query: 188 agcctggggaggctggcccgccgaggcttcagcctgcggatgaatccgctggccggcaca 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 258 agcctggggaggctggcccgccgaggcttcagcctgcggatgaatccgctggccggcaca 317 Query: 248 ctgcaaaggctttaccacacccgtagcaggccatgtgtggcccagagtgtgagccaggtg 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 318 ctgcaaaggctttaccacacccgtagcaggccatgtgtggcccagagtgtgagccaggtg 377 Query: 308 ggtgaacggtccaagccaacgttgcagccctacgacttcgaccgaagccgggtgcgtaaa 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 378 ggtgaacggtccaagccaacgttgcagccctacgacttcgaccgaagccgggtgcgtaaa 437 Query: 368 attgccggcgagaggaagacgctggtcgaccaggtgcggngcatgagcacaagcctggga 427 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 438 attgccggcgagaggaagacgctggtcgaccaggtgcggggcatgagcacaagcctggga 497 Query: 428 catgccaagttggtgccccaaaagatgtacggcaagacgaggctgttc 475 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 498 catgccaagttggtgccccaaaagatgtacggcaagacgaggctgttc 545 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9314 Number of Sequences: 18737 Number of extensions: 9314 Number of successful extensions: 152 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 151 Number of HSP's gapped (non-prelim): 1 length of query: 475 length of database: 41,270,998 effective HSP length: 17 effective length of query: 458 effective length of database: 40,952,469 effective search space: 18756230802 effective search space used: 18756230802 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945974|AI945974 bs19a04.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs19a04 5', mRNA sequence. (374 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG4523-RB feature: mRNA loc=X:join(6424224..6424450,6424595..642... 416 e-116 CG4523-RA feature: mRNA loc=X:join(6424224..6424450,6424509..642... 416 e-116 >CG4523-RB feature: mRNA loc=X:join(6424224..6424450,6424595..6424837, 6424894..6425097,6425162..6425947,6426011..6427024, 6427089..6427394);ID=FBan0004523;gene_id=FBgn0029891;gene _sym=CG4523;sym=CG4523;scaffold=AE003438;len=2780 Length = 2780 Score = 416 bits (210), Expect = e-116 Identities = 210/210 (100%) Strand = Plus / Plus Query: 6 aggcgcgcctatgtggagtacctgctcatatgcagctttctggcacgcgcccggctgcgt 65 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2571 aggcgcgcctatgtggagtacctgctcatatgcagctttctggcacgcgcccggctgcgt 2630 Query: 66 cgcattcgcggcgccctcaactggatccagaatgtggtggcgtaggagaaaagccttcta 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2631 cgcattcgcggcgccctcaactggatccagaatgtggtggcgtaggagaaaagccttcta 2690 Query: 126 cttgttactctgagaaaatcaaatggaaaagcgtgtgatacctatattttacatatgtat 185 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2691 cttgttactctgagaaaatcaaatggaaaagcgtgtgatacctatattttacatatgtat 2750 Query: 186 ttataaatgaaatcaaaattaacgccaaaa 215 |||||||||||||||||||||||||||||| Sbjct: 2751 ttataaatgaaatcaaaattaacgccaaaa 2780 >CG4523-RA feature: mRNA loc=X:join(6424224..6424450,6424509..6424837, 6424900..6425097,6425162..6425947,6426011..6427024, 6427089..6427394);ID=FBan0004523;gene_id=FBgn0029891;gene _sym=CG4523;sym=CG4523;scaffold=AE003438;len=2860 Length = 2860 Score = 416 bits (210), Expect = e-116 Identities = 210/210 (100%) Strand = Plus / Plus Query: 6 aggcgcgcctatgtggagtacctgctcatatgcagctttctggcacgcgcccggctgcgt 65 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2651 aggcgcgcctatgtggagtacctgctcatatgcagctttctggcacgcgcccggctgcgt 2710 Query: 66 cgcattcgcggcgccctcaactggatccagaatgtggtggcgtaggagaaaagccttcta 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2711 cgcattcgcggcgccctcaactggatccagaatgtggtggcgtaggagaaaagccttcta 2770 Query: 126 cttgttactctgagaaaatcaaatggaaaagcgtgtgatacctatattttacatatgtat 185 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2771 cttgttactctgagaaaatcaaatggaaaagcgtgtgatacctatattttacatatgtat 2830 Query: 186 ttataaatgaaatcaaaattaacgccaaaa 215 |||||||||||||||||||||||||||||| Sbjct: 2831 ttataaatgaaatcaaaattaacgccaaaa 2860 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,648 Number of Sequences: 18737 Number of extensions: 10648 Number of successful extensions: 1037 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1035 Number of HSP's gapped (non-prelim): 2 length of query: 374 length of database: 41,270,998 effective HSP length: 17 effective length of query: 357 effective length of database: 40,952,469 effective search space: 14620031433 effective search space used: 14620031433 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946033|AI946033 bs19h06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs19h06 5', mRNA sequence. (445 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31740-RA feature: mRNA loc=2L:join(17987011..17987181,17987318... 716 0.0 >CG31740-RA feature: mRNA loc=2L:join(17987011..17987181, 17987318..17987785);ID=FBan0031740;gene_id=FBgn0051740;g ene_sym=CG31740;sym=CG31740;scaffold=AE003657;len=639 Length = 639 Score = 716 bits (361), Expect = 0.0 Identities = 377/385 (97%) Strand = Plus / Plus Query: 61 tctaaattcgtagccaaggattaacttcaacgtatttcttcagcaggnnnnnnnntccca 120 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 111 tctaaattcgtagccaaggattaacttcaacgtatttcttcagcaggaaaaaaaatccca 170 Query: 121 gccgtaccttttgagcccctcctgcagattttagaagagattccagtgtcctttaccaaa 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 171 gccgtaccttttgagcccctcctgcagattttagaagagattccagtgtcctttaccaaa 230 Query: 181 tccaaactttcaagatggttctgatgctttgctgcagcttcgatcccttctacgttggac 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 231 tccaaactttcaagatggttctgatgctttgctgcagcttcgatcccttctacgttggac 290 Query: 241 cctgcccacccggctgcctggctcctttgatgggaggaactccctattgcggatgtggtc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 291 cctgcccacccggctgcctggctcctttgatgggaggaactccctattgcggatgtggtc 350 Query: 301 cctgtggaggttgctgtagtccttgctgtggtccatgtggtccttgtggtggctgcagct 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 351 cctgtggaggttgctgtagtccttgctgtggtccatgtggtccttgtggtggctgcagct 410 Query: 361 cgtgtccttgcggctggtgaagcgcccgctatcataggcattaatacggcagcaagcggt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 411 cgtgtccttgcggctggtgaagcgcccgctatcataggcattaatacggcagcaagcggt 470 Query: 421 aacaagtcaatttaaagatcaacct 445 ||||||||||||||||||||||||| Sbjct: 471 aacaagtcaatttaaagatcaacct 495 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8398 Number of Sequences: 18737 Number of extensions: 8398 Number of successful extensions: 623 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 621 Number of HSP's gapped (non-prelim): 2 length of query: 445 length of database: 41,270,998 effective HSP length: 17 effective length of query: 428 effective length of database: 40,952,469 effective search space: 17527656732 effective search space used: 17527656732 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946055|AI946055 bs20c07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs20c07 5', mRNA sequence. (371 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31740-RA feature: mRNA loc=2L:join(17987011..17987181,17987318... 605 e-172 >CG31740-RA feature: mRNA loc=2L:join(17987011..17987181, 17987318..17987785);ID=FBan0031740;gene_id=FBgn0051740;g ene_sym=CG31740;sym=CG31740;scaffold=AE003657;len=639 Length = 639 Score = 605 bits (305), Expect = e-172 Identities = 321/329 (97%) Strand = Plus / Plus Query: 43 aatatgaaaaattgaacaaaaattctaaattcgtagccaaggattaacttcaacgtattt 102 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 88 aatatgaaaaattgaacaaaaattctaaattcgtagccaaggattaacttcaacgtattt 147 Query: 103 cttcagcaggnnnnnnnntcccagccgtaccttttgagcccctcctgcagattttagaag 162 |||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 148 cttcagcaggaaaaaaaatcccagccgtaccttttgagcccctcctgcagattttagaag 207 Query: 163 agattccagtgtcctttaccaaatccaaactttcaagatggttctgatgctttgctgcag 222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 208 agattccagtgtcctttaccaaatccaaactttcaagatggttctgatgctttgctgcag 267 Query: 223 cttcgatcccttctacgttggaccctgcccacccggctgcctggctcctttgatgggagg 282 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 268 cttcgatcccttctacgttggaccctgcccacccggctgcctggctcctttgatgggagg 327 Query: 283 aactccctattgcggatgtggtccctgtggaggttgctgtagtccttgctgtggtccatg 342 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 328 aactccctattgcggatgtggtccctgtggaggttgctgtagtccttgctgtggtccatg 387 Query: 343 tggtccttgtggtggctgcagctcgtgtc 371 ||||||||||||||||||||||||||||| Sbjct: 388 tggtccttgtggtggctgcagctcgtgtc 416 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7932 Number of Sequences: 18737 Number of extensions: 7932 Number of successful extensions: 628 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 625 Number of HSP's gapped (non-prelim): 3 length of query: 371 length of database: 41,270,998 effective HSP length: 17 effective length of query: 354 effective length of database: 40,952,469 effective search space: 14497174026 effective search space used: 14497174026 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946058|AI946058 bs20c10.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs20c10 5', mRNA sequence. (447 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31740-RA feature: mRNA loc=2L:join(17987011..17987181,17987318... 793 0.0 >CG31740-RA feature: mRNA loc=2L:join(17987011..17987181, 17987318..17987785);ID=FBan0031740;gene_id=FBgn0051740;g ene_sym=CG31740;sym=CG31740;scaffold=AE003657;len=639 Length = 639 Score = 793 bits (400), Expect = 0.0 Identities = 416/424 (98%) Strand = Plus / Plus Query: 24 aatatgaaaaattgaacaaaaattctaaattcgtagccaaggattaacttcaacgtattt 83 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 88 aatatgaaaaattgaacaaaaattctaaattcgtagccaaggattaacttcaacgtattt 147 Query: 84 cttcagcaggnnnnnnnntcccagccgtaccttttgagcccctcctgcagattttagaag 143 |||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 148 cttcagcaggaaaaaaaatcccagccgtaccttttgagcccctcctgcagattttagaag 207 Query: 144 agattccagtgtcctttaccaaatccaaactttcaagatggttctgatgctttgctgcag 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 208 agattccagtgtcctttaccaaatccaaactttcaagatggttctgatgctttgctgcag 267 Query: 204 cttcgatcccttctacgttggaccctgcccacccggctgcctggctcctttgatgggagg 263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 268 cttcgatcccttctacgttggaccctgcccacccggctgcctggctcctttgatgggagg 327 Query: 264 aactccctattgcggatgtggtccctgtggaggttgctgtagtccttgctgtggtccatg 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 328 aactccctattgcggatgtggtccctgtggaggttgctgtagtccttgctgtggtccatg 387 Query: 324 tggtccttgtggtggctgcagctcgtgtccttgcggctggtgaagcgcccgctatcatag 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 388 tggtccttgtggtggctgcagctcgtgtccttgcggctggtgaagcgcccgctatcatag 447 Query: 384 gcattaatacggcagcaagcggtaacaagtcaatttaaagatcaaccttctggaaaagac 443 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 448 gcattaatacggcagcaagcggtaacaagtcaatttaaagatcaaccttctggaaaagac 507 Query: 444 tgct 447 |||| Sbjct: 508 tgct 511 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9432 Number of Sequences: 18737 Number of extensions: 9432 Number of successful extensions: 699 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 697 Number of HSP's gapped (non-prelim): 2 length of query: 447 length of database: 41,270,998 effective HSP length: 17 effective length of query: 430 effective length of database: 40,952,469 effective search space: 17609561670 effective search space used: 17609561670 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946059|AI946059 bs20c11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs20c11 5', mRNA sequence. (448 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7834 Number of Sequences: 18737 Number of extensions: 7834 Number of successful extensions: 533 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 533 Number of HSP's gapped (non-prelim): 0 length of query: 448 length of database: 41,270,998 effective HSP length: 17 effective length of query: 431 effective length of database: 40,952,469 effective search space: 17650514139 effective search space used: 17650514139 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946099|AI946099 bs20h04.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs20h04 5', mRNA sequence. (473 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31740-RA feature: mRNA loc=2L:join(17987011..17987181,17987318... 777 0.0 >CG31740-RA feature: mRNA loc=2L:join(17987011..17987181, 17987318..17987785);ID=FBan0031740;gene_id=FBgn0051740;g ene_sym=CG31740;sym=CG31740;scaffold=AE003657;len=639 Length = 639 Score = 777 bits (392), Expect = 0.0 Identities = 411/420 (97%) Strand = Plus / Plus Query: 54 tctaaattcgtagccaaggattaacttcaacgtatttcttcagcaggnnnnnnnntccca 113 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 111 tctaaattcgtagccaaggattaacttcaacgtatttcttcagcaggaaaaaaaatccca 170 Query: 114 gccgtaccttttgagcccctcctgcagattttagaagagattccagtgtcctttaccaaa 173 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 171 gccgtaccttttgagcccctcctgcagattttagaagagattccagtgtcctttaccaaa 230 Query: 174 tccaaactttcaagatggttctgatgctttgctgcagcttcgatcccttctacgttggac 233 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 231 tccaaactttcaagatggttctgatgctttgctgcagcttcgatcccttctacgttggac 290 Query: 234 cctgcccacccggctgcctggctcctttgatgggaggaactccctattgcggatgtggtc 293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 291 cctgcccacccggctgcctggctcctttgatgggaggaactccctattgcggatgtggtc 350 Query: 294 cctgtggaggttgctgtagtccttgctgtggaccatgtggtccttgtggtggctgcagct 353 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 351 cctgtggaggttgctgtagtccttgctgtggtccatgtggtccttgtggtggctgcagct 410 Query: 354 cgtgtccttgcggctggtgaagcgcccgctatcataggcattaatacggcagcaagcggt 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 411 cgtgtccttgcggctggtgaagcgcccgctatcataggcattaatacggcagcaagcggt 470 Query: 414 aacaagtcaatttaaagatcaaccttctggaaaagactgctggagaaatatgttgctgtt 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 471 aacaagtcaatttaaagatcaaccttctggaaaagactgctggagaaatatgttgctgtt 530 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9530 Number of Sequences: 18737 Number of extensions: 9530 Number of successful extensions: 186 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 184 Number of HSP's gapped (non-prelim): 2 length of query: 473 length of database: 41,270,998 effective HSP length: 17 effective length of query: 456 effective length of database: 40,952,469 effective search space: 18674325864 effective search space used: 18674325864 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946153|AI946153 bs21e07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs21e07 5', mRNA sequence. (570 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31740-RA feature: mRNA loc=2L:join(17987011..17987181,17987318... 971 0.0 >CG31740-RA feature: mRNA loc=2L:join(17987011..17987181, 17987318..17987785);ID=FBan0031740;gene_id=FBgn0051740;g ene_sym=CG31740;sym=CG31740;scaffold=AE003657;len=639 Length = 639 Score = 971 bits (490), Expect = 0.0 Identities = 513/522 (98%), Gaps = 1/522 (0%) Strand = Plus / Plus Query: 49 aatatgaaaaattgaacaaaaattctaaattcgtagccaaggattaacttcaacgtattt 108 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 88 aatatgaaaaattgaacaaaaattctaaattcgtagccaaggattaacttcaacgtattt 147 Query: 109 cttcagcaggnnnnnnnntcccagccgtaccttttgagcccctcctgcagattttagaag 168 |||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 148 cttcagcaggaaaaaaaatcccagccgtaccttttgagcccctcctgcagattttagaag 207 Query: 169 agattccagtgtcctttaccaaatccaaactttcaagatggttctgatgctttgctgcag 228 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 208 agattccagtgtcctttaccaaatccaaactttcaagatggttctgatgctttgctgcag 267 Query: 229 cttcgatcccttctacgttggaccctgcccacccggctgcctggctcctttgatgggagg 288 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 268 cttcgatcccttctacgttggaccctgcccacccggctgcctggctcctttgatgggagg 327 Query: 289 aactccctattgcggatgtggtccctgtggaggttgctgtagtccttgctgtggtccatg 348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 328 aactccctattgcggatgtggtccctgtggaggttgctgtagtccttgctgtggtccatg 387 Query: 349 tggtccttgtggtggctgcagctcgtgtccttgcggctggtgaagcgcccgctatcatag 408 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 388 tggtccttgtggtggctgcagctcgtgtccttgcggctggtgaagcgcccgctatcatag 447 Query: 409 gcattaatacggcagcaagcggtaacaagtcaatttaaagatcaacctttctggaaaaga 468 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 448 gcattaatacggcagcaagcggtaacaagtcaatttaaagatcaacc-ttctggaaaaga 506 Query: 469 ctgctggagaaatatgttgctgttcgaattcctttttgccttggccggggctaaaccaac 528 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 507 ctgctggagaaatatgttgctgttcgaattcctttttgccttggccggggctaaaccaac 566 Query: 529 taagctctcgtatacataaagaatttttattataagctgttc 570 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 567 taagctctcgtatacataaagaatttttattataagctgttc 608 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,776 Number of Sequences: 18737 Number of extensions: 12776 Number of successful extensions: 247 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 243 Number of HSP's gapped (non-prelim): 3 length of query: 570 length of database: 41,270,998 effective HSP length: 17 effective length of query: 553 effective length of database: 40,952,469 effective search space: 22646715357 effective search space used: 22646715357 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946179|AI946179 bs21g10.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs21g10 5', mRNA sequence. (406 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31740-RA feature: mRNA loc=2L:join(17987011..17987181,17987318... 638 0.0 >CG31740-RA feature: mRNA loc=2L:join(17987011..17987181, 17987318..17987785);ID=FBan0031740;gene_id=FBgn0051740;g ene_sym=CG31740;sym=CG31740;scaffold=AE003657;len=639 Length = 639 Score = 638 bits (322), Expect = 0.0 Identities = 338/346 (97%) Strand = Plus / Plus Query: 61 tctaaattcgtagccaaggattaacttcaacgtatttcttcagcaggnnnnnnnntccca 120 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 111 tctaaattcgtagccaaggattaacttcaacgtatttcttcagcaggaaaaaaaatccca 170 Query: 121 gccgtaccttttgagcccctcctgcagattttagaagagattccagtgtcctttaccaaa 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 171 gccgtaccttttgagcccctcctgcagattttagaagagattccagtgtcctttaccaaa 230 Query: 181 tccaaactttcaagatggttctgatgctttgctgcagcttcgatcccttctacgttggac 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 231 tccaaactttcaagatggttctgatgctttgctgcagcttcgatcccttctacgttggac 290 Query: 241 cctgcccacccggctgcctggctcctttgatgggaggaactccctattgcggatgtggtc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 291 cctgcccacccggctgcctggctcctttgatgggaggaactccctattgcggatgtggtc 350 Query: 301 cctgtggaggttgctgtagtccttgctgtggtccatgtggtccttgtggtggctgcagct 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 351 cctgtggaggttgctgtagtccttgctgtggtccatgtggtccttgtggtggctgcagct 410 Query: 361 cgtgtccttgcggctggtgaagcgcccgctatcataggcattaata 406 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 411 cgtgtccttgcggctggtgaagcgcccgctatcataggcattaata 456 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7721 Number of Sequences: 18737 Number of extensions: 7721 Number of successful extensions: 587 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 585 Number of HSP's gapped (non-prelim): 2 length of query: 406 length of database: 41,270,998 effective HSP length: 17 effective length of query: 389 effective length of database: 40,952,469 effective search space: 15930510441 effective search space used: 15930510441 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946181|AI946181 bs21h01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs21h01 5', mRNA sequence. (599 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31740-RA feature: mRNA loc=2L:join(17987011..17987181,17987318... 985 0.0 >CG31740-RA feature: mRNA loc=2L:join(17987011..17987181, 17987318..17987785);ID=FBan0031740;gene_id=FBgn0051740;g ene_sym=CG31740;sym=CG31740;scaffold=AE003657;len=639 Length = 639 Score = 985 bits (497), Expect = 0.0 Identities = 513/521 (98%) Strand = Plus / Plus Query: 59 tctaaattcgtagccaaggattaacttcaacgtatttcttcagcaggnnnnnnnntccca 118 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 111 tctaaattcgtagccaaggattaacttcaacgtatttcttcagcaggaaaaaaaatccca 170 Query: 119 gccgtaccttttgagcccctcctgcagattttagaagagattccagtgtcctttaccaaa 178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 171 gccgtaccttttgagcccctcctgcagattttagaagagattccagtgtcctttaccaaa 230 Query: 179 tccaaactttcaagatggttctgatgctttgctgcagcttcgatcccttctacgttggac 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 231 tccaaactttcaagatggttctgatgctttgctgcagcttcgatcccttctacgttggac 290 Query: 239 cctgcccacccggctgcctggctcctttgatgggaggaactccctattgcggatgtggtc 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 291 cctgcccacccggctgcctggctcctttgatgggaggaactccctattgcggatgtggtc 350 Query: 299 cctgtggaggttgctgtagtccttgctgtggtccatgtggtccttgtggtggctgcagct 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 351 cctgtggaggttgctgtagtccttgctgtggtccatgtggtccttgtggtggctgcagct 410 Query: 359 cgtgtccttgcggctggtgaagcgcccgctatcataggcattaatacggcagcaagcggt 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 411 cgtgtccttgcggctggtgaagcgcccgctatcataggcattaatacggcagcaagcggt 470 Query: 419 aacaagtcaatttaaagatcaaccttctggaaaagactgctggagaaatatgttgctgtt 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 471 aacaagtcaatttaaagatcaaccttctggaaaagactgctggagaaatatgttgctgtt 530 Query: 479 cgaattcctttttgccttggccggggctaaaccaactaagctctcgtatacataaagaat 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 531 cgaattcctttttgccttggccggggctaaaccaactaagctctcgtatacataaagaat 590 Query: 539 ttttattataagctgttcagtaataaaatgaattaaagtac 579 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 591 ttttattataagctgttcagtaataaaatgaattaaagtac 631 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,967 Number of Sequences: 18737 Number of extensions: 11967 Number of successful extensions: 229 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 227 Number of HSP's gapped (non-prelim): 2 length of query: 599 length of database: 41,270,998 effective HSP length: 17 effective length of query: 582 effective length of database: 40,952,469 effective search space: 23834336958 effective search space used: 23834336958 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946237|AI946237 bs22d12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs22d12 5', mRNA sequence. (564 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31740-RA feature: mRNA loc=2L:join(17987011..17987181,17987318... 965 0.0 >CG31740-RA feature: mRNA loc=2L:join(17987011..17987181, 17987318..17987785);ID=FBan0031740;gene_id=FBgn0051740;g ene_sym=CG31740;sym=CG31740;scaffold=AE003657;len=639 Length = 639 Score = 965 bits (487), Expect = 0.0 Identities = 503/511 (98%) Strand = Plus / Plus Query: 54 tctaaattcgtagccaaggattaacttcaacgtatttcttcagcaggnnnnnnnntccca 113 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 111 tctaaattcgtagccaaggattaacttcaacgtatttcttcagcaggaaaaaaaatccca 170 Query: 114 gccgtaccttttgagcccctcctgcagattttagaagagattccagtgtcctttaccaaa 173 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 171 gccgtaccttttgagcccctcctgcagattttagaagagattccagtgtcctttaccaaa 230 Query: 174 tccaaactttcaagatggttctgatgctttgctgcagcttcgatcccttctacgttggac 233 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 231 tccaaactttcaagatggttctgatgctttgctgcagcttcgatcccttctacgttggac 290 Query: 234 cctgcccacccggctgcctggctcctttgatgggaggaactccctattgcggatgtggtc 293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 291 cctgcccacccggctgcctggctcctttgatgggaggaactccctattgcggatgtggtc 350 Query: 294 cctgtggaggttgctgtagtccttgctgtggtccatgtggtccttgtggtggctgcagct 353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 351 cctgtggaggttgctgtagtccttgctgtggtccatgtggtccttgtggtggctgcagct 410 Query: 354 cgtgtccttgcggctggtgaagcgcccgctatcataggcattaatacggcagcaagcggt 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 411 cgtgtccttgcggctggtgaagcgcccgctatcataggcattaatacggcagcaagcggt 470 Query: 414 aacaagtcaatttaaagatcaaccttctggaaaagactgctggagaaatatgttgctgtt 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 471 aacaagtcaatttaaagatcaaccttctggaaaagactgctggagaaatatgttgctgtt 530 Query: 474 cgaattcctttttgccttggccggggctaaaccaactaagctctcgtatacataaagaat 533 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 531 cgaattcctttttgccttggccggggctaaaccaactaagctctcgtatacataaagaat 590 Query: 534 ttttattataagctgttcagtaataaaatga 564 ||||||||||||||||||||||||||||||| Sbjct: 591 ttttattataagctgttcagtaataaaatga 621 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,601 Number of Sequences: 18737 Number of extensions: 11601 Number of successful extensions: 217 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 215 Number of HSP's gapped (non-prelim): 2 length of query: 564 length of database: 41,270,998 effective HSP length: 17 effective length of query: 547 effective length of database: 40,952,469 effective search space: 22401000543 effective search space used: 22401000543 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946251|AI946251 bs22f03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs22f03 5', mRNA sequence. (621 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32371-RA feature: mRNA loc=3L:complement(7726777..7727881);ID=... 1146 0.0 >CG32371-RA feature: mRNA loc=3L:complement(7726777..7727881);ID=FBan0032371;gene_ id=FBgn0052371;gene_sym=CG32371;sym=CG32371;scaffold=AE0 03557;len=1105 Length = 1105 Score = 1146 bits (578), Expect = 0.0 Identities = 599/605 (99%), Gaps = 2/605 (0%) Strand = Plus / Plus Query: 17 gttcagttcaaaccttataccggttctgttttaatcagagtattcgtcagtagtctaaac 76 |||||||||||||||||||||||||| | ||||||||||||||||||||||| |||| Sbjct: 1 gttcagttcaaaccttataccggttcggca--aatcagagtattcgtcagtagtccaaac 58 Query: 77 attatttaaatttttcgtacaaaatgtctgagaaatcaaaaacatcagtagtgaatgttc 136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 59 attatttaaatttttcgtacaaaatgtctgagaaatcaaaaacatcagtagtgaatgttc 118 Query: 137 gctacactaacaagttgtcgagcaattcttcgcgtgcggaaatgctatcctgggtgaata 196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 119 gctacactaacaagttgtcgagcaattcttcgcgtgcggaaatgctatcctgggtgaata 178 Query: 197 acacgttgaaatcgcagtttttcaaggtcgaggaattgtgcaccggagcggcatactgcc 256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 179 acacgttgaaatcgcagtttttcaaggtcgaggaattgtgcaccggagcggcatactgcc 238 Query: 257 agttaatggacatactgtttgcccggtcgatcccgatgcagcgagtcaagtttcgcacaa 316 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 239 agttaatggacatactgtttgcccggtcgatcccgatgcagcgagtcaagtttcgcacaa 298 Query: 317 acgttgagtatgagtacatccagaatttcaagcttttacagggatgtttcaacaaatttg 376 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 299 acgttgagtatgagtacatccagaatttcaagcttttacagggatgtttcaacaaatttg 358 Query: 377 ttgttgataagatcattcccatcgaccggctggtcaagggacgataccaggataacttcg 436 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 359 ttgttgataagatcattcccatcgaccggctggtcaagggacgataccaggataacttcg 418 Query: 437 agttccttcagtggtttcgcaagttcttcgatgccaactatgagagtcgagaatatgatc 496 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 419 agttccttcagtggtttcgcaagttcttcgatgccaactatgagagtcgagaatatgatc 478 Query: 497 ctgtgatagctcggaatggagcaatgctgggacttggctcgcctcccatggaagccaagt 556 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 479 ctgtgatagctcggaatggagcaatgctgggacttggctcgcctcccatggaagccaagt 538 Query: 557 tacgcaaatcagtgaataagtcaaatccccaaactaaacccaccgaagaatcctctgctc 616 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 539 tacgcaaatcagtgaataagtcaaatccccaaactaaacccaccgaagaatcctctgctc 598 Query: 617 aaaca 621 ||||| Sbjct: 599 aaaca 603 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,893 Number of Sequences: 18737 Number of extensions: 11893 Number of successful extensions: 249 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 244 Number of HSP's gapped (non-prelim): 5 length of query: 621 length of database: 41,270,998 effective HSP length: 17 effective length of query: 604 effective length of database: 40,952,469 effective search space: 24735291276 effective search space used: 24735291276 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946282|AI946282 bs23a02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs23a02 5', mRNA sequence. (469 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31740-RA feature: mRNA loc=2L:join(17987011..17987181,17987318... 837 0.0 >CG31740-RA feature: mRNA loc=2L:join(17987011..17987181, 17987318..17987785);ID=FBan0031740;gene_id=FBgn0051740;g ene_sym=CG31740;sym=CG31740;scaffold=AE003657;len=639 Length = 639 Score = 837 bits (422), Expect = 0.0 Identities = 438/446 (98%) Strand = Plus / Plus Query: 24 aatatgaaaaattgaacaaaaattctaaattcgtagccaaggattaacttcaacgtattt 83 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 88 aatatgaaaaattgaacaaaaattctaaattcgtagccaaggattaacttcaacgtattt 147 Query: 84 cttcagcaggnnnnnnnntcccagccgtaccttttgagcccctcctgcagattttagaag 143 |||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 148 cttcagcaggaaaaaaaatcccagccgtaccttttgagcccctcctgcagattttagaag 207 Query: 144 agattccagtgtcctttaccaaatccaaactttcaagatggttctgatgctttgctgcag 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 208 agattccagtgtcctttaccaaatccaaactttcaagatggttctgatgctttgctgcag 267 Query: 204 cttcgatcccttctacgttggaccctgcccacccggctgcctggctcctttgatgggagg 263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 268 cttcgatcccttctacgttggaccctgcccacccggctgcctggctcctttgatgggagg 327 Query: 264 aactccctattgcggatgtggtccctgtggaggttgctgtagtccttgctgtggtccatg 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 328 aactccctattgcggatgtggtccctgtggaggttgctgtagtccttgctgtggtccatg 387 Query: 324 tggtccttgtggtggctgcagctcgtgtccttgcggctggtgaagcgcccgctatcatag 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 388 tggtccttgtggtggctgcagctcgtgtccttgcggctggtgaagcgcccgctatcatag 447 Query: 384 gcattaatacggcagcaagcggtaacaagtcaatttaaagatcaaccttctggaaaagac 443 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 448 gcattaatacggcagcaagcggtaacaagtcaatttaaagatcaaccttctggaaaagac 507 Query: 444 tgctggagaaatatgttgctgttcga 469 |||||||||||||||||||||||||| Sbjct: 508 tgctggagaaatatgttgctgttcga 533 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,560 Number of Sequences: 18737 Number of extensions: 10560 Number of successful extensions: 203 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 201 Number of HSP's gapped (non-prelim): 2 length of query: 469 length of database: 41,270,998 effective HSP length: 17 effective length of query: 452 effective length of database: 40,952,469 effective search space: 18510515988 effective search space used: 18510515988 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946372|AI946372 bs24e02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs24e02 5', mRNA sequence. (398 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8477 Number of Sequences: 18737 Number of extensions: 8477 Number of successful extensions: 707 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 707 Number of HSP's gapped (non-prelim): 0 length of query: 398 length of database: 41,270,998 effective HSP length: 17 effective length of query: 381 effective length of database: 40,952,469 effective search space: 15602890689 effective search space used: 15602890689 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946387|AI946387 bs24g11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs24g11 5', mRNA sequence. (430 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31740-RA feature: mRNA loc=2L:join(17987011..17987181,17987318... 704 0.0 >CG31740-RA feature: mRNA loc=2L:join(17987011..17987181, 17987318..17987785);ID=FBan0031740;gene_id=FBgn0051740;g ene_sym=CG31740;sym=CG31740;scaffold=AE003657;len=639 Length = 639 Score = 704 bits (355), Expect = 0.0 Identities = 371/379 (97%) Strand = Plus / Plus Query: 52 tctaaattcgtagccaaggattaacttcaacgtatttcttcagcaggnnnnnnnntccca 111 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 111 tctaaattcgtagccaaggattaacttcaacgtatttcttcagcaggaaaaaaaatccca 170 Query: 112 gccgtaccttttgagcccctcctgcagattttagaagagattccagtgtcctttaccaaa 171 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 171 gccgtaccttttgagcccctcctgcagattttagaagagattccagtgtcctttaccaaa 230 Query: 172 tccaaactttcaagatggttctgatgctttgctgcagcttcgatcccttctacgttggac 231 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 231 tccaaactttcaagatggttctgatgctttgctgcagcttcgatcccttctacgttggac 290 Query: 232 cctgcccacccggctgcctggctcctttgatgggaggaactccctattgcggatgtggtc 291 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 291 cctgcccacccggctgcctggctcctttgatgggaggaactccctattgcggatgtggtc 350 Query: 292 cctgtggaggttgctgtagtccttgctgtggtccatgtggtccttgtggtggctgcagct 351 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 351 cctgtggaggttgctgtagtccttgctgtggtccatgtggtccttgtggtggctgcagct 410 Query: 352 cgtgtccttgcggctggtgaagcgcccgctatcataggcattaatacggcagcaagcggt 411 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 411 cgtgtccttgcggctggtgaagcgcccgctatcataggcattaatacggcagcaagcggt 470 Query: 412 aacaagtcaatttaaagat 430 ||||||||||||||||||| Sbjct: 471 aacaagtcaatttaaagat 489 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8168 Number of Sequences: 18737 Number of extensions: 8168 Number of successful extensions: 611 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 609 Number of HSP's gapped (non-prelim): 2 length of query: 430 length of database: 41,270,998 effective HSP length: 17 effective length of query: 413 effective length of database: 40,952,469 effective search space: 16913369697 effective search space used: 16913369697 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946413|AI946413 bs25d05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs25d05 5', mRNA sequence. (374 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value robo-RB feature: mRNA loc=2R:complement(17736074..17738862,17738... 478 e-134 >robo-RB feature: mRNA loc=2R:complement(17736074..17738862,17738938..17739269, 17739327..17739559,17739622..17739913, 17739969..17740243,17740302..17740500, 17740565..17740657,17740716..17740886, 17740952..17741033,17741095..17741255, 17741322..17741404,17741462..17741941, 17742002..17742455,17742516..17742634, 17742746..17742926,17743163..17743284, 17743352..17743584, 17743641..17743898);ID=FBan0013521;gene_id=FBgn0005631;g ene_sym=robo;sym=CG13521;scaffold=AE003458;len=6557 Length = 6557 Score = 478 bits (241), Expect = e-134 Identities = 241/241 (100%) Strand = Plus / Plus Query: 134 cttatcgcatggaaatgcaagcgtaagtggagcaggcgagaaataatttcgagtttttgg 193 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 131 cttatcgcatggaaatgcaagcgtaagtggagcaggcgagaaataatttcgagtttttgg 190 Query: 194 acagataaaaagcaaaaagcaagtaaagcccataaatgcctagccataatgccgccacgc 253 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 191 acagataaaaagcaaaaagcaagtaaagcccataaatgcctagccataatgccgccacgc 250 Query: 254 ctacatatgacccaaaaacaacgccaaaatgatcgccgctgcattgggtcatctgtagag 313 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 251 ctacatatgacccaaaaacaacgccaaaatgatcgccgctgcattgggtcatctgtagag 310 Query: 314 tcgtcattgcaacagcaccaacaccataaaatgcatcccatgcatcccgaaaaccacgcc 373 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 311 tcgtcattgcaacagcaccaacaccataaaatgcatcccatgcatcccgaaaaccacgcc 370 Query: 374 a 374 | Sbjct: 371 a 371 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7765 Number of Sequences: 18737 Number of extensions: 7765 Number of successful extensions: 663 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 661 Number of HSP's gapped (non-prelim): 2 length of query: 374 length of database: 41,270,998 effective HSP length: 17 effective length of query: 357 effective length of database: 40,952,469 effective search space: 14620031433 effective search space used: 14620031433 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946541|AI946541 bs27f01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs27f01 5', mRNA sequence. (408 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32371-RA feature: mRNA loc=3L:complement(7726777..7727881);ID=... 787 0.0 >CG32371-RA feature: mRNA loc=3L:complement(7726777..7727881);ID=FBan0032371;gene_ id=FBgn0052371;gene_sym=CG32371;sym=CG32371;scaffold=AE0 03557;len=1105 Length = 1105 Score = 787 bits (397), Expect = 0.0 Identities = 400/401 (99%) Strand = Plus / Plus Query: 8 ggcaaatcagagtattcgtcagtagtctaaacattatttaaatttttcgtacaaaatgtc 67 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 27 ggcaaatcagagtattcgtcagtagtccaaacattatttaaatttttcgtacaaaatgtc 86 Query: 68 tgagaaatcaaaaacatcagtagtgaatgttcgctacactaacaagttgtcgagcaattc 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 87 tgagaaatcaaaaacatcagtagtgaatgttcgctacactaacaagttgtcgagcaattc 146 Query: 128 ttcgcgtgcggaaatgctatcctgggtgaataacacgttgaaatcgcagtttttcaaggt 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 147 ttcgcgtgcggaaatgctatcctgggtgaataacacgttgaaatcgcagtttttcaaggt 206 Query: 188 cgaggaattgtgcaccggagcggcatactgccagttaatggacatactgtttgcccggtc 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 207 cgaggaattgtgcaccggagcggcatactgccagttaatggacatactgtttgcccggtc 266 Query: 248 gatcccgatgcagcgagtcaagtttcgcacaaacgttgagtatgagtacatccagaattt 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 267 gatcccgatgcagcgagtcaagtttcgcacaaacgttgagtatgagtacatccagaattt 326 Query: 308 caagcttttacagggatgtttcaacaaatttgttgttgataagatcattcccatcgaccg 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 327 caagcttttacagggatgtttcaacaaatttgttgttgataagatcattcccatcgaccg 386 Query: 368 gctggtcaagggacgataccaggataacttcgagttccttc 408 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 387 gctggtcaagggacgataccaggataacttcgagttccttc 427 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8104 Number of Sequences: 18737 Number of extensions: 8104 Number of successful extensions: 590 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 588 Number of HSP's gapped (non-prelim): 2 length of query: 408 length of database: 41,270,998 effective HSP length: 17 effective length of query: 391 effective length of database: 40,952,469 effective search space: 16012415379 effective search space used: 16012415379 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946739|AI946739 bs30b08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs30b08 5', mRNA sequence. (543 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31740-RA feature: mRNA loc=2L:join(17987011..17987181,17987318... 1015 0.0 >CG31740-RA feature: mRNA loc=2L:join(17987011..17987181, 17987318..17987785);ID=FBan0031740;gene_id=FBgn0051740;g ene_sym=CG31740;sym=CG31740;scaffold=AE003657;len=639 Length = 639 Score = 1015 bits (512), Expect = 0.0 Identities = 528/536 (98%) Strand = Plus / Plus Query: 8 gaaaaattgaacaaaaattctaaattcgtagccaaggattaacttcaacgtatttcttca 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 93 gaaaaattgaacaaaaattctaaattcgtagccaaggattaacttcaacgtatttcttca 152 Query: 68 gcaggnnnnnnnntcccagccgtaccttttgagcccctcctgcagattttagaagagatt 127 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 153 gcaggaaaaaaaatcccagccgtaccttttgagcccctcctgcagattttagaagagatt 212 Query: 128 ccagtgtcctttaccaaatccaaactttcaagatggttctgatgctttgctgcagcttcg 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 213 ccagtgtcctttaccaaatccaaactttcaagatggttctgatgctttgctgcagcttcg 272 Query: 188 atcccttctacgttggaccctgcccacccggctgcctggctcctttgatgggaggaactc 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 273 atcccttctacgttggaccctgcccacccggctgcctggctcctttgatgggaggaactc 332 Query: 248 cctattgcggatgtggtccctgtggaggttgctgtagtccttgctgtggtccatgtggtc 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 333 cctattgcggatgtggtccctgtggaggttgctgtagtccttgctgtggtccatgtggtc 392 Query: 308 cttgtggtggctgcagctcgtgtccttgcggctggtgaagcgcccgctatcataggcatt 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 393 cttgtggtggctgcagctcgtgtccttgcggctggtgaagcgcccgctatcataggcatt 452 Query: 368 aatacggcagcaagcggtaacaagtcaatttaaagatcaaccttctggaaaagactgctg 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 453 aatacggcagcaagcggtaacaagtcaatttaaagatcaaccttctggaaaagactgctg 512 Query: 428 gagaaatatgttgctgttcgaattcctttttgccttggccggggctaaaccaactaagct 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 513 gagaaatatgttgctgttcgaattcctttttgccttggccggggctaaaccaactaagct 572 Query: 488 ctcgtatacataaagaatttttattataagctgttcagtaataaaatgaattaaag 543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 573 ctcgtatacataaagaatttttattataagctgttcagtaataaaatgaattaaag 628 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,496 Number of Sequences: 18737 Number of extensions: 12496 Number of successful extensions: 246 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 244 Number of HSP's gapped (non-prelim): 2 length of query: 543 length of database: 41,270,998 effective HSP length: 17 effective length of query: 526 effective length of database: 40,952,469 effective search space: 21540998694 effective search space used: 21540998694 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946803|AI946803 bs30h01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs30h01 5', mRNA sequence. (607 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31740-RA feature: mRNA loc=2L:join(17987011..17987181,17987318... 1033 0.0 >CG31740-RA feature: mRNA loc=2L:join(17987011..17987181, 17987318..17987785);ID=FBan0031740;gene_id=FBgn0051740;g ene_sym=CG31740;sym=CG31740;scaffold=AE003657;len=639 Length = 639 Score = 1033 bits (521), Expect = 0.0 Identities = 537/545 (98%) Strand = Plus / Plus Query: 46 aatatgaaaaattgaacaaaaattctaaattcgtagccaaggattaacttcaacgtattt 105 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 88 aatatgaaaaattgaacaaaaattctaaattcgtagccaaggattaacttcaacgtattt 147 Query: 106 cttcagcaggnnnnnnnntcccagccgtaccttttgagcccctcctgcagattttagaag 165 |||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 148 cttcagcaggaaaaaaaatcccagccgtaccttttgagcccctcctgcagattttagaag 207 Query: 166 agattccagtgtcctttaccaaatccaaactttcaagatggttctgatgctttgctgcag 225 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 208 agattccagtgtcctttaccaaatccaaactttcaagatggttctgatgctttgctgcag 267 Query: 226 cttcgatcccttctacgttggaccctgcccacccggctgcctggctcctttgatgggagg 285 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 268 cttcgatcccttctacgttggaccctgcccacccggctgcctggctcctttgatgggagg 327 Query: 286 aactccctattgcggatgtggtccctgtggaggttgctgtagtccttgctgtggtccatg 345 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 328 aactccctattgcggatgtggtccctgtggaggttgctgtagtccttgctgtggtccatg 387 Query: 346 tggtccttgtggtggctgcagctcgtgtccttgcggctggtgaagcgcccgctatcatag 405 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 388 tggtccttgtggtggctgcagctcgtgtccttgcggctggtgaagcgcccgctatcatag 447 Query: 406 gcattaatacggcagcaagcggtaacaagtcaatttaaagatcaaccttctggaaaagac 465 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 448 gcattaatacggcagcaagcggtaacaagtcaatttaaagatcaaccttctggaaaagac 507 Query: 466 tgctggagaaatatgttgctgttcgaattcctttttgccttggccggggctaaaccaact 525 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 508 tgctggagaaatatgttgctgttcgaattcctttttgccttggccggggctaaaccaact 567 Query: 526 aagctctcgtatacataaagaatttttattataagctgttcagtaataaaatgaattaaa 585 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 568 aagctctcgtatacataaagaatttttattataagctgttcagtaataaaatgaattaaa 627 Query: 586 gtaca 590 ||||| Sbjct: 628 gtaca 632 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,652 Number of Sequences: 18737 Number of extensions: 13652 Number of successful extensions: 319 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 316 Number of HSP's gapped (non-prelim): 3 length of query: 607 length of database: 41,270,998 effective HSP length: 17 effective length of query: 590 effective length of database: 40,952,469 effective search space: 24161956710 effective search space used: 24161956710 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946871|AI946871 bs32b09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs32b09 5', mRNA sequence. (490 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32371-RA feature: mRNA loc=3L:complement(7726777..7727881);ID=... 950 0.0 >CG32371-RA feature: mRNA loc=3L:complement(7726777..7727881);ID=FBan0032371;gene_ id=FBgn0052371;gene_sym=CG32371;sym=CG32371;scaffold=AE0 03557;len=1105 Length = 1105 Score = 950 bits (479), Expect = 0.0 Identities = 482/483 (99%) Strand = Plus / Plus Query: 8 ccttataccggttcggcaaatcagagtattcgtcagtagtctaaacattatttaaatttt 67 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 13 ccttataccggttcggcaaatcagagtattcgtcagtagtccaaacattatttaaatttt 72 Query: 68 tcgtacaaaatgtctgagaaatcaaaaacatcagtagtgaatgttcgctacactaacaag 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 73 tcgtacaaaatgtctgagaaatcaaaaacatcagtagtgaatgttcgctacactaacaag 132 Query: 128 ttgtcgagcaattcttcgcgtgcggaaatgctatcctgggtgaataacacgttgaaatcg 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 133 ttgtcgagcaattcttcgcgtgcggaaatgctatcctgggtgaataacacgttgaaatcg 192 Query: 188 cagtttttcaaggtcgaggaattgtgcaccggagcggcatactgccagttaatggacata 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 193 cagtttttcaaggtcgaggaattgtgcaccggagcggcatactgccagttaatggacata 252 Query: 248 ctgtttgcccggtcgatcccgatgcagcgagtcaagtttcgcacaaacgttgagtatgag 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 253 ctgtttgcccggtcgatcccgatgcagcgagtcaagtttcgcacaaacgttgagtatgag 312 Query: 308 tacatccagaatttcaagcttttacagggatgtttcaacaaatttgttgttgataagatc 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 313 tacatccagaatttcaagcttttacagggatgtttcaacaaatttgttgttgataagatc 372 Query: 368 attcccatcgaccggctggtcaagggacgataccaggataacttcgagttccttcagtgg 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 373 attcccatcgaccggctggtcaagggacgataccaggataacttcgagttccttcagtgg 432 Query: 428 tttcgcaagttcttcgatgccaactatgagagtcgagaatatgatcctgtgatagctcgg 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 433 tttcgcaagttcttcgatgccaactatgagagtcgagaatatgatcctgtgatagctcgg 492 Query: 488 aat 490 ||| Sbjct: 493 aat 495 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9521 Number of Sequences: 18737 Number of extensions: 9521 Number of successful extensions: 202 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 200 Number of HSP's gapped (non-prelim): 2 length of query: 490 length of database: 41,270,998 effective HSP length: 17 effective length of query: 473 effective length of database: 40,952,469 effective search space: 19370517837 effective search space used: 19370517837 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946887|AI946887 bs32e03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs32e03 5', mRNA sequence. (467 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31740-RA feature: mRNA loc=2L:join(17987011..17987181,17987318... 777 0.0 >CG31740-RA feature: mRNA loc=2L:join(17987011..17987181, 17987318..17987785);ID=FBan0031740;gene_id=FBgn0051740;g ene_sym=CG31740;sym=CG31740;scaffold=AE003657;len=639 Length = 639 Score = 777 bits (392), Expect = 0.0 Identities = 408/416 (98%) Strand = Plus / Plus Query: 52 tctaaattcgtagccaaggattaacttcaacgtatttcttcagcaggnnnnnnnntccca 111 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 111 tctaaattcgtagccaaggattaacttcaacgtatttcttcagcaggaaaaaaaatccca 170 Query: 112 gccgtaccttttgagcccctcctgcagattttagaagagattccagtgtcctttaccaaa 171 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 171 gccgtaccttttgagcccctcctgcagattttagaagagattccagtgtcctttaccaaa 230 Query: 172 tccaaactttcaagatggttctgatgctttgctgcagcttcgatcccttctacgttggac 231 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 231 tccaaactttcaagatggttctgatgctttgctgcagcttcgatcccttctacgttggac 290 Query: 232 cctgcccacccggctgcctggctcctttgatgggaggaactccctattgcggatgtggtc 291 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 291 cctgcccacccggctgcctggctcctttgatgggaggaactccctattgcggatgtggtc 350 Query: 292 cctgtggaggttgctgtagtccttgctgtggtccatgtggtccttgtggtggctgcagct 351 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 351 cctgtggaggttgctgtagtccttgctgtggtccatgtggtccttgtggtggctgcagct 410 Query: 352 cgtgtccttgcggctggtgaagcgcccgctatcataggcattaatacggcagcaagcggt 411 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 411 cgtgtccttgcggctggtgaagcgcccgctatcataggcattaatacggcagcaagcggt 470 Query: 412 aacaagtcaatttaaagatcaaccttctggaaaagactgctggagaaatatgttgc 467 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 471 aacaagtcaatttaaagatcaaccttctggaaaagactgctggagaaatatgttgc 526 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9260 Number of Sequences: 18737 Number of extensions: 9260 Number of successful extensions: 172 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 170 Number of HSP's gapped (non-prelim): 2 length of query: 467 length of database: 41,270,998 effective HSP length: 17 effective length of query: 450 effective length of database: 40,952,469 effective search space: 18428611050 effective search space used: 18428611050 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946933|AI946933 bs33b09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs33b09 5', mRNA sequence. (604 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31740-RA feature: mRNA loc=2L:join(17987011..17987181,17987318... 1043 0.0 >CG31740-RA feature: mRNA loc=2L:join(17987011..17987181, 17987318..17987785);ID=FBan0031740;gene_id=FBgn0051740;g ene_sym=CG31740;sym=CG31740;scaffold=AE003657;len=639 Length = 639 Score = 1043 bits (526), Expect = 0.0 Identities = 542/550 (98%) Strand = Plus / Plus Query: 48 aatatgaaaaattgaacaaaaattctaaattcgtagccaaggattaacttcaacgtattt 107 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 88 aatatgaaaaattgaacaaaaattctaaattcgtagccaaggattaacttcaacgtattt 147 Query: 108 cttcagcaggnnnnnnnntcccagccgtaccttttgagcccctcctgcagattttagaag 167 |||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 148 cttcagcaggaaaaaaaatcccagccgtaccttttgagcccctcctgcagattttagaag 207 Query: 168 agattccagtgtcctttaccaaatccaaactttcaagatggttctgatgctttgctgcag 227 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 208 agattccagtgtcctttaccaaatccaaactttcaagatggttctgatgctttgctgcag 267 Query: 228 cttcgatcccttctacgttggaccctgcccacccggctgcctggctcctttgatgggagg 287 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 268 cttcgatcccttctacgttggaccctgcccacccggctgcctggctcctttgatgggagg 327 Query: 288 aactccctattgcggatgtggtccctgtggaggttgctgtagtccttgctgtggtccatg 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 328 aactccctattgcggatgtggtccctgtggaggttgctgtagtccttgctgtggtccatg 387 Query: 348 tggtccttgtggtggctgcagctcgtgtccttgcggctggtgaagcgcccgctatcatag 407 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 388 tggtccttgtggtggctgcagctcgtgtccttgcggctggtgaagcgcccgctatcatag 447 Query: 408 gcattaatacggcagcaagcggtaacaagtcaatttaaagatcaaccttctggaaaagac 467 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 448 gcattaatacggcagcaagcggtaacaagtcaatttaaagatcaaccttctggaaaagac 507 Query: 468 tgctggagaaatatgttgctgttcgaattcctttttgccttggccggggctaaaccaact 527 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 508 tgctggagaaatatgttgctgttcgaattcctttttgccttggccggggctaaaccaact 567 Query: 528 aagctctcgtatacataaagaatttttattataagctgttcagtaataaaatgaattaaa 587 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 568 aagctctcgtatacataaagaatttttattataagctgttcagtaataaaatgaattaaa 627 Query: 588 gtacaaaagg 597 |||||||||| Sbjct: 628 gtacaaaagg 637 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,811 Number of Sequences: 18737 Number of extensions: 13811 Number of successful extensions: 262 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 259 Number of HSP's gapped (non-prelim): 3 length of query: 604 length of database: 41,270,998 effective HSP length: 17 effective length of query: 587 effective length of database: 40,952,469 effective search space: 24039099303 effective search space used: 24039099303 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946947|AI946947 bs33c11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs33c11 5', mRNA sequence. (588 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31740-RA feature: mRNA loc=2L:join(17987011..17987181,17987318... 1025 0.0 >CG31740-RA feature: mRNA loc=2L:join(17987011..17987181, 17987318..17987785);ID=FBan0031740;gene_id=FBgn0051740;g ene_sym=CG31740;sym=CG31740;scaffold=AE003657;len=639 Length = 639 Score = 1025 bits (517), Expect = 0.0 Identities = 533/541 (98%) Strand = Plus / Plus Query: 48 aatatgaaaaattgaacaaaaattctaaattcgtagccaaggattaacttcaacgtattt 107 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 88 aatatgaaaaattgaacaaaaattctaaattcgtagccaaggattaacttcaacgtattt 147 Query: 108 cttcagcaggnnnnnnnntcccagccgtaccttttgagcccctcctgcagattttagaag 167 |||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 148 cttcagcaggaaaaaaaatcccagccgtaccttttgagcccctcctgcagattttagaag 207 Query: 168 agattccagtgtcctttaccaaatccaaactttcaagatggttctgatgctttgctgcag 227 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 208 agattccagtgtcctttaccaaatccaaactttcaagatggttctgatgctttgctgcag 267 Query: 228 cttcgatcccttctacgttggaccctgcccacccggctgcctggctcctttgatgggagg 287 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 268 cttcgatcccttctacgttggaccctgcccacccggctgcctggctcctttgatgggagg 327 Query: 288 aactccctattgcggatgtggtccctgtggaggttgctgtagtccttgctgtggtccatg 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 328 aactccctattgcggatgtggtccctgtggaggttgctgtagtccttgctgtggtccatg 387 Query: 348 tggtccttgtggtggctgcagctcgtgtccttgcggctggtgaagcgcccgctatcatag 407 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 388 tggtccttgtggtggctgcagctcgtgtccttgcggctggtgaagcgcccgctatcatag 447 Query: 408 gcattaatacggcagcaagcggtaacaagtcaatttaaagatcaaccttctggaaaagac 467 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 448 gcattaatacggcagcaagcggtaacaagtcaatttaaagatcaaccttctggaaaagac 507 Query: 468 tgctggagaaatatgttgctgttcgaattcctttttgccttggccggggctaaaccaact 527 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 508 tgctggagaaatatgttgctgttcgaattcctttttgccttggccggggctaaaccaact 567 Query: 528 aagctctcgtatacataaagaatttttattataagctgttcagtaataaaatgaattaaa 587 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 568 aagctctcgtatacataaagaatttttattataagctgttcagtaataaaatgaattaaa 627 Query: 588 g 588 | Sbjct: 628 g 628 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,507 Number of Sequences: 18737 Number of extensions: 13507 Number of successful extensions: 258 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 255 Number of HSP's gapped (non-prelim): 3 length of query: 588 length of database: 41,270,998 effective HSP length: 17 effective length of query: 571 effective length of database: 40,952,469 effective search space: 23383859799 effective search space used: 23383859799 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946992|AI946992 bs33g11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs33g11 5', mRNA sequence. (647 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,442 Number of Sequences: 18737 Number of extensions: 11442 Number of successful extensions: 194 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 194 Number of HSP's gapped (non-prelim): 0 length of query: 647 length of database: 41,270,998 effective HSP length: 17 effective length of query: 630 effective length of database: 40,952,469 effective search space: 25800055470 effective search space used: 25800055470 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI947094|AI947094 bs35a01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs35a01 5', mRNA sequence. (566 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31740-RA feature: mRNA loc=2L:join(17987011..17987181,17987318... 1029 0.0 >CG31740-RA feature: mRNA loc=2L:join(17987011..17987181, 17987318..17987785);ID=FBan0031740;gene_id=FBgn0051740;g ene_sym=CG31740;sym=CG31740;scaffold=AE003657;len=639 Length = 639 Score = 1029 bits (519), Expect = 0.0 Identities = 535/543 (98%) Strand = Plus / Plus Query: 24 aatatgaaaaattgaacaaaaattctaaattcgtagccaaggattaacttcaacgtattt 83 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 88 aatatgaaaaattgaacaaaaattctaaattcgtagccaaggattaacttcaacgtattt 147 Query: 84 cttcagcaggnnnnnnnntcccagccgtaccttttgagcccctcctgcagattttagaag 143 |||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 148 cttcagcaggaaaaaaaatcccagccgtaccttttgagcccctcctgcagattttagaag 207 Query: 144 agattccagtgtcctttaccaaatccaaactttcaagatggttctgatgctttgctgcag 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 208 agattccagtgtcctttaccaaatccaaactttcaagatggttctgatgctttgctgcag 267 Query: 204 cttcgatcccttctacgttggaccctgcccacccggctgcctggctcctttgatgggagg 263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 268 cttcgatcccttctacgttggaccctgcccacccggctgcctggctcctttgatgggagg 327 Query: 264 aactccctattgcggatgtggtccctgtggaggttgctgtagtccttgctgtggtccatg 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 328 aactccctattgcggatgtggtccctgtggaggttgctgtagtccttgctgtggtccatg 387 Query: 324 tggtccttgtggtggctgcagctcgtgtccttgcggctggtgaagcgcccgctatcatag 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 388 tggtccttgtggtggctgcagctcgtgtccttgcggctggtgaagcgcccgctatcatag 447 Query: 384 gcattaatacggcagcaagcggtaacaagtcaatttaaagatcaaccttctggaaaagac 443 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 448 gcattaatacggcagcaagcggtaacaagtcaatttaaagatcaaccttctggaaaagac 507 Query: 444 tgctggagaaatatgttgctgttcgaattcctttttgccttggccggggctaaaccaact 503 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 508 tgctggagaaatatgttgctgttcgaattcctttttgccttggccggggctaaaccaact 567 Query: 504 aagctctcgtatacataaagaatttttattataagctgttcagtaataaaatgaattaaa 563 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 568 aagctctcgtatacataaagaatttttattataagctgttcagtaataaaatgaattaaa 627 Query: 564 gta 566 ||| Sbjct: 628 gta 630 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,708 Number of Sequences: 18737 Number of extensions: 12708 Number of successful extensions: 252 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 250 Number of HSP's gapped (non-prelim): 2 length of query: 566 length of database: 41,270,998 effective HSP length: 17 effective length of query: 549 effective length of database: 40,952,469 effective search space: 22482905481 effective search space used: 22482905481 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI947151|AI947151 bs35f09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs35f09 5', mRNA sequence. (634 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,767 Number of Sequences: 18737 Number of extensions: 10767 Number of successful extensions: 180 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 180 Number of HSP's gapped (non-prelim): 0 length of query: 634 length of database: 41,270,998 effective HSP length: 17 effective length of query: 617 effective length of database: 40,952,469 effective search space: 25267673373 effective search space used: 25267673373 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI947209|AI947209 bs36d01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs36d01 5', mRNA sequence. (495 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8109 Number of Sequences: 18737 Number of extensions: 8109 Number of successful extensions: 147 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 147 Number of HSP's gapped (non-prelim): 0 length of query: 495 length of database: 41,270,998 effective HSP length: 17 effective length of query: 478 effective length of database: 40,952,469 effective search space: 19575280182 effective search space used: 19575280182 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AW941299|AW941299 GM07940.3prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM07940 3, mRNA sequence. (667 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG9924-RD feature: mRNA loc=3R:complement(9793693..9795071,97951... 747 0.0 CG9924-RC feature: mRNA loc=3R:complement(9793693..9795071,97951... 747 0.0 CG9924-RB feature: mRNA loc=3R:complement(9793693..9795071,97951... 747 0.0 CG9924-RA feature: mRNA loc=3R:complement(9793693..9795071,97951... 747 0.0 >CG9924-RD feature: mRNA loc=3R:complement(9793693..9795071,9795138..9795280, 9795349..9795527,9795650..9795945,9796019..9796180, 9796249..9796370,9796693..9796843,9849387..9849635, 9851587..9851700);ID=FBan0009924;gene_id=FBgn0038192;gene _sym=CG9924;sym=CG9924;scaffold=AE003702;len=2795 Length = 2795 Score = 747 bits (377), Expect = 0.0 Identities = 377/377 (100%) Strand = Plus / Minus Query: 172 cttctttaattgctgcttttgtttcaagttgtgttttgacttaagattaaaattaattca 231 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2103 cttctttaattgctgcttttgtttcaagttgtgttttgacttaagattaaaattaattca 2044 Query: 232 taattattactcgtaaacatattaatcataaggtaatattaaatcaacaaataaaataca 291 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2043 taattattactcgtaaacatattaatcataaggtaatattaaatcaacaaataaaataca 1984 Query: 292 tttaaaatcaagtttatcaaagtgaattaaattacttgaaatcgaaacaataaacggtac 351 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1983 tttaaaatcaagtttatcaaagtgaattaaattacttgaaatcgaaacaataaacggtac 1924 Query: 352 ggctcgctatgcttttgctcctgcatttgcattatctgtctgcgtttaacataatctatt 411 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1923 ggctcgctatgcttttgctcctgcatttgcattatctgtctgcgtttaacataatctatt 1864 Query: 412 gcgtttgtagtattgccgccgtatgcattcttgaggttctccgccaatcgatccatcaga 471 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1863 gcgtttgtagtattgccgccgtatgcattcttgaggttctccgccaatcgatccatcaga 1804 Query: 472 tatctcacatggcggccactgcatcgactggagttctgctttctgttgcgattgttgaat 531 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1803 tatctcacatggcggccactgcatcgactggagttctgctttctgttgcgattgttgaat 1744 Query: 532 cgattgttggttgtagt 548 ||||||||||||||||| Sbjct: 1743 cgattgttggttgtagt 1727 >CG9924-RC feature: mRNA loc=3R:complement(9793693..9795071,9795138..9795280, 9795349..9795527,9795650..9795945,9796019..9796180, 9796249..9796370,9796693..9796843,9849387..9849635, 9851580..9851700);ID=FBan0009924;gene_id=FBgn0038192;gene _sym=CG9924;sym=CG9924;scaffold=AE003702;len=2802 Length = 2802 Score = 747 bits (377), Expect = 0.0 Identities = 377/377 (100%) Strand = Plus / Minus Query: 172 cttctttaattgctgcttttgtttcaagttgtgttttgacttaagattaaaattaattca 231 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2110 cttctttaattgctgcttttgtttcaagttgtgttttgacttaagattaaaattaattca 2051 Query: 232 taattattactcgtaaacatattaatcataaggtaatattaaatcaacaaataaaataca 291 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2050 taattattactcgtaaacatattaatcataaggtaatattaaatcaacaaataaaataca 1991 Query: 292 tttaaaatcaagtttatcaaagtgaattaaattacttgaaatcgaaacaataaacggtac 351 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1990 tttaaaatcaagtttatcaaagtgaattaaattacttgaaatcgaaacaataaacggtac 1931 Query: 352 ggctcgctatgcttttgctcctgcatttgcattatctgtctgcgtttaacataatctatt 411 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1930 ggctcgctatgcttttgctcctgcatttgcattatctgtctgcgtttaacataatctatt 1871 Query: 412 gcgtttgtagtattgccgccgtatgcattcttgaggttctccgccaatcgatccatcaga 471 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1870 gcgtttgtagtattgccgccgtatgcattcttgaggttctccgccaatcgatccatcaga 1811 Query: 472 tatctcacatggcggccactgcatcgactggagttctgctttctgttgcgattgttgaat 531 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1810 tatctcacatggcggccactgcatcgactggagttctgctttctgttgcgattgttgaat 1751 Query: 532 cgattgttggttgtagt 548 ||||||||||||||||| Sbjct: 1750 cgattgttggttgtagt 1734 >CG9924-RB feature: mRNA loc=3R:complement(9793693..9795071,9795138..9795280, 9795349..9795527,9795650..9795945,9796019..9796180, 9796249..9796370,9796693..9796843,9852619..9852685, 9857314..9857796);ID=FBan0009924;gene_id=FBgn0038192;gene _sym=CG9924;sym=CG9924;scaffold=AE003702;len=2982 Length = 2982 Score = 747 bits (377), Expect = 0.0 Identities = 377/377 (100%) Strand = Plus / Minus Query: 172 cttctttaattgctgcttttgtttcaagttgtgttttgacttaagattaaaattaattca 231 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2290 cttctttaattgctgcttttgtttcaagttgtgttttgacttaagattaaaattaattca 2231 Query: 232 taattattactcgtaaacatattaatcataaggtaatattaaatcaacaaataaaataca 291 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2230 taattattactcgtaaacatattaatcataaggtaatattaaatcaacaaataaaataca 2171 Query: 292 tttaaaatcaagtttatcaaagtgaattaaattacttgaaatcgaaacaataaacggtac 351 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2170 tttaaaatcaagtttatcaaagtgaattaaattacttgaaatcgaaacaataaacggtac 2111 Query: 352 ggctcgctatgcttttgctcctgcatttgcattatctgtctgcgtttaacataatctatt 411 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2110 ggctcgctatgcttttgctcctgcatttgcattatctgtctgcgtttaacataatctatt 2051 Query: 412 gcgtttgtagtattgccgccgtatgcattcttgaggttctccgccaatcgatccatcaga 471 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2050 gcgtttgtagtattgccgccgtatgcattcttgaggttctccgccaatcgatccatcaga 1991 Query: 472 tatctcacatggcggccactgcatcgactggagttctgctttctgttgcgattgttgaat 531 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1990 tatctcacatggcggccactgcatcgactggagttctgctttctgttgcgattgttgaat 1931 Query: 532 cgattgttggttgtagt 548 ||||||||||||||||| Sbjct: 1930 cgattgttggttgtagt 1914 >CG9924-RA feature: mRNA loc=3R:complement(9793693..9795071,9795138..9795280, 9795349..9795527,9795650..9795945,9796019..9796180, 9796249..9796370,9796693..9796843, 9797009..9797539);ID=FBan0009924;gene_id=FBgn0038192;gene _sym=CG9924;sym=CG9924;scaffold=AE003702;len=2963 Length = 2963 Score = 747 bits (377), Expect = 0.0 Identities = 377/377 (100%) Strand = Plus / Minus Query: 172 cttctttaattgctgcttttgtttcaagttgtgttttgacttaagattaaaattaattca 231 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2271 cttctttaattgctgcttttgtttcaagttgtgttttgacttaagattaaaattaattca 2212 Query: 232 taattattactcgtaaacatattaatcataaggtaatattaaatcaacaaataaaataca 291 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2211 taattattactcgtaaacatattaatcataaggtaatattaaatcaacaaataaaataca 2152 Query: 292 tttaaaatcaagtttatcaaagtgaattaaattacttgaaatcgaaacaataaacggtac 351 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2151 tttaaaatcaagtttatcaaagtgaattaaattacttgaaatcgaaacaataaacggtac 2092 Query: 352 ggctcgctatgcttttgctcctgcatttgcattatctgtctgcgtttaacataatctatt 411 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2091 ggctcgctatgcttttgctcctgcatttgcattatctgtctgcgtttaacataatctatt 2032 Query: 412 gcgtttgtagtattgccgccgtatgcattcttgaggttctccgccaatcgatccatcaga 471 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2031 gcgtttgtagtattgccgccgtatgcattcttgaggttctccgccaatcgatccatcaga 1972 Query: 472 tatctcacatggcggccactgcatcgactggagttctgctttctgttgcgattgttgaat 531 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1971 tatctcacatggcggccactgcatcgactggagttctgctttctgttgcgattgttgaat 1912 Query: 532 cgattgttggttgtagt 548 ||||||||||||||||| Sbjct: 1911 cgattgttggttgtagt 1895 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,777 Number of Sequences: 18737 Number of extensions: 11777 Number of successful extensions: 296 Number of sequences better than 1.0e-100: 4 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 288 Number of HSP's gapped (non-prelim): 8 length of query: 667 length of database: 41,270,998 effective HSP length: 17 effective length of query: 650 effective length of database: 40,952,469 effective search space: 26619104850 effective search space used: 26619104850 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662064|BE662064 bs19e06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs19e06 5', mRNA sequence. (355 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31740-RA feature: mRNA loc=2L:join(17987011..17987181,17987318... 507 e-143 >CG31740-RA feature: mRNA loc=2L:join(17987011..17987181, 17987318..17987785);ID=FBan0031740;gene_id=FBgn0051740;g ene_sym=CG31740;sym=CG31740;scaffold=AE003657;len=639 Length = 639 Score = 507 bits (256), Expect = e-143 Identities = 272/280 (97%) Strand = Plus / Plus Query: 76 ttctaaattcgtagccaaggattaacttcaacgtatttcttcagcaggnnnnnnnntccc 135 |||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 110 ttctaaattcgtagccaaggattaacttcaacgtatttcttcagcaggaaaaaaaatccc 169 Query: 136 agccgtaccttttgagcccctcctgcagattttagaagagattccagtgtcctttaccaa 195 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 170 agccgtaccttttgagcccctcctgcagattttagaagagattccagtgtcctttaccaa 229 Query: 196 atccaaactttcaagatggttctgatgctttgctgcagcttcgatcccttctacgttgga 255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 230 atccaaactttcaagatggttctgatgctttgctgcagcttcgatcccttctacgttgga 289 Query: 256 ccctgcccacccggctgcctggctcctttgatgggaggaactccctattgcggatgtggt 315 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 290 ccctgcccacccggctgcctggctcctttgatgggaggaactccctattgcggatgtggt 349 Query: 316 ccctgtggaggttgctgtagtccttgctgtggtccatgtg 355 |||||||||||||||||||||||||||||||||||||||| Sbjct: 350 ccctgtggaggttgctgtagtccttgctgtggtccatgtg 389 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6255 Number of Sequences: 18737 Number of extensions: 6255 Number of successful extensions: 494 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 492 Number of HSP's gapped (non-prelim): 2 length of query: 355 length of database: 41,270,998 effective HSP length: 17 effective length of query: 338 effective length of database: 40,952,469 effective search space: 13841934522 effective search space used: 13841934522 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662205|BE662205 bs31b11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs31b11 5', mRNA sequence. (95 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2041 Number of Sequences: 18737 Number of extensions: 2041 Number of successful extensions: 580 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 580 Number of HSP's gapped (non-prelim): 0 length of query: 95 length of database: 41,270,998 effective HSP length: 16 effective length of query: 79 effective length of database: 40,971,206 effective search space: 3236725274 effective search space used: 3236725274 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662213|BE662213 bs31e06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs31e06 5', mRNA sequence. (414 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6750 Number of Sequences: 18737 Number of extensions: 6750 Number of successful extensions: 457 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 457 Number of HSP's gapped (non-prelim): 0 length of query: 414 length of database: 41,270,998 effective HSP length: 17 effective length of query: 397 effective length of database: 40,952,469 effective search space: 16258130193 effective search space used: 16258130193 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662252|BE662252 bs35a11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs35a11 5', mRNA sequence. (511 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32332-RE feature: mRNA loc=3L:join(1232641..1233861,1233933..1... 638 0.0 CG32332-RD feature: mRNA loc=3L:join(1232641..1233861,1233933..1... 638 0.0 CG32332-RC feature: mRNA loc=3L:join(1232641..1233861,1233933..1... 638 0.0 CG32332-RB feature: mRNA loc=3L:join(1232641..1233861,1233933..1... 638 0.0 CG32332-RA feature: mRNA loc=3L:join(1234482..1234622,1234705..1... 638 0.0 >CG32332-RE feature: mRNA loc=3L:join(1232641..1233861,1233933..1234352, 1234705..1235673, 1236117..1236617);ID=FBan0032332;gene_id=FBgn0052332;gene _sym=CG32332;sym=CG32332;scaffold=AE003471;len=3111 Length = 3111 Score = 638 bits (322), Expect = 0.0 Identities = 328/330 (99%) Strand = Plus / Minus Query: 7 ggtattcttcttgtgctgcgacttgggcttacttcccagttttactaggaacacgtcgct 66 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2700 ggtattcttcttgtgctgcgacttggccttacttcccagttttactaggaacacgtcgct 2641 Query: 67 ggcggtctcctcgcaggtcttgtagcaaacctcgatacccttgcgccttgtgtccaaatt 126 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2640 gtcggtctcctcgcaggtcttgtagcaaacctcgatacccttgcgccttgtgtccaaatt 2581 Query: 127 gacacccttcatggtgtccatgatgtccttccgctcgacctgcatgcaacatgatcgctg 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2580 gacacccttcatggtgtccatgatgtccttccgctcgacctgcatgcaacatgatcgctg 2521 Query: 187 gttctggacgggacagtgcgcgggcacgatgggatcggatccgccgcagagtcgctggcg 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2520 gttctggacgggacagtgcgcgggcacgatgggatcggatccgccgcagagtcgctggcg 2461 Query: 247 gtagcagtcgaccttggcctcctggaagtcgcaggcctccttgatcttcgagaagggcac 306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2460 gtagcagtcgaccttggcctcctggaagtcgcaggcctccttgatcttcgagaagggcac 2401 Query: 307 gtagtagttgtcggtctcgcaggcatcgtt 336 |||||||||||||||||||||||||||||| Sbjct: 2400 gtagtagttgtcggtctcgcaggcatcgtt 2371 >CG32332-RD feature: mRNA loc=3L:join(1232641..1233861,1233933..1234352, 1234705..1235673, 1236117..1236617);ID=FBan0032332;gene_id=FBgn0052332;gene _sym=CG32332;sym=CG32332;scaffold=AE003471;len=3111 Length = 3111 Score = 638 bits (322), Expect = 0.0 Identities = 328/330 (99%) Strand = Plus / Minus Query: 7 ggtattcttcttgtgctgcgacttgggcttacttcccagttttactaggaacacgtcgct 66 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2700 ggtattcttcttgtgctgcgacttggccttacttcccagttttactaggaacacgtcgct 2641 Query: 67 ggcggtctcctcgcaggtcttgtagcaaacctcgatacccttgcgccttgtgtccaaatt 126 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2640 gtcggtctcctcgcaggtcttgtagcaaacctcgatacccttgcgccttgtgtccaaatt 2581 Query: 127 gacacccttcatggtgtccatgatgtccttccgctcgacctgcatgcaacatgatcgctg 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2580 gacacccttcatggtgtccatgatgtccttccgctcgacctgcatgcaacatgatcgctg 2521 Query: 187 gttctggacgggacagtgcgcgggcacgatgggatcggatccgccgcagagtcgctggcg 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2520 gttctggacgggacagtgcgcgggcacgatgggatcggatccgccgcagagtcgctggcg 2461 Query: 247 gtagcagtcgaccttggcctcctggaagtcgcaggcctccttgatcttcgagaagggcac 306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2460 gtagcagtcgaccttggcctcctggaagtcgcaggcctccttgatcttcgagaagggcac 2401 Query: 307 gtagtagttgtcggtctcgcaggcatcgtt 336 |||||||||||||||||||||||||||||| Sbjct: 2400 gtagtagttgtcggtctcgcaggcatcgtt 2371 >CG32332-RC feature: mRNA loc=3L:join(1232641..1233861,1233933..1234352, 1234705..1234953,1235027..1235673, 1236117..1236617);ID=FBan0032332;gene_id=FBgn0052332;gene _sym=CG32332;sym=CG32332;scaffold=AE003471;len=3038 Length = 3038 Score = 638 bits (322), Expect = 0.0 Identities = 328/330 (99%) Strand = Plus / Minus Query: 7 ggtattcttcttgtgctgcgacttgggcttacttcccagttttactaggaacacgtcgct 66 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2627 ggtattcttcttgtgctgcgacttggccttacttcccagttttactaggaacacgtcgct 2568 Query: 67 ggcggtctcctcgcaggtcttgtagcaaacctcgatacccttgcgccttgtgtccaaatt 126 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2567 gtcggtctcctcgcaggtcttgtagcaaacctcgatacccttgcgccttgtgtccaaatt 2508 Query: 127 gacacccttcatggtgtccatgatgtccttccgctcgacctgcatgcaacatgatcgctg 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2507 gacacccttcatggtgtccatgatgtccttccgctcgacctgcatgcaacatgatcgctg 2448 Query: 187 gttctggacgggacagtgcgcgggcacgatgggatcggatccgccgcagagtcgctggcg 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2447 gttctggacgggacagtgcgcgggcacgatgggatcggatccgccgcagagtcgctggcg 2388 Query: 247 gtagcagtcgaccttggcctcctggaagtcgcaggcctccttgatcttcgagaagggcac 306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2387 gtagcagtcgaccttggcctcctggaagtcgcaggcctccttgatcttcgagaagggcac 2328 Query: 307 gtagtagttgtcggtctcgcaggcatcgtt 336 |||||||||||||||||||||||||||||| Sbjct: 2327 gtagtagttgtcggtctcgcaggcatcgtt 2298 >CG32332-RB feature: mRNA loc=3L:join(1232641..1233861,1233933..1234352, 1234705..1234953,1235027..1235673, 1236117..1236617);ID=FBan0032332;gene_id=FBgn0052332;gene _sym=CG32332;sym=CG32332;scaffold=AE003471;len=3038 Length = 3038 Score = 638 bits (322), Expect = 0.0 Identities = 328/330 (99%) Strand = Plus / Minus Query: 7 ggtattcttcttgtgctgcgacttgggcttacttcccagttttactaggaacacgtcgct 66 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2627 ggtattcttcttgtgctgcgacttggccttacttcccagttttactaggaacacgtcgct 2568 Query: 67 ggcggtctcctcgcaggtcttgtagcaaacctcgatacccttgcgccttgtgtccaaatt 126 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2567 gtcggtctcctcgcaggtcttgtagcaaacctcgatacccttgcgccttgtgtccaaatt 2508 Query: 127 gacacccttcatggtgtccatgatgtccttccgctcgacctgcatgcaacatgatcgctg 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2507 gacacccttcatggtgtccatgatgtccttccgctcgacctgcatgcaacatgatcgctg 2448 Query: 187 gttctggacgggacagtgcgcgggcacgatgggatcggatccgccgcagagtcgctggcg 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2447 gttctggacgggacagtgcgcgggcacgatgggatcggatccgccgcagagtcgctggcg 2388 Query: 247 gtagcagtcgaccttggcctcctggaagtcgcaggcctccttgatcttcgagaagggcac 306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2387 gtagcagtcgaccttggcctcctggaagtcgcaggcctccttgatcttcgagaagggcac 2328 Query: 307 gtagtagttgtcggtctcgcaggcatcgtt 336 |||||||||||||||||||||||||||||| Sbjct: 2327 gtagtagttgtcggtctcgcaggcatcgtt 2298 >CG32332-RA feature: mRNA loc=3L:join(1234482..1234622,1234705..1234953, 1235027..1235673, 1236117..1236617);ID=FBan0032332;gene_id=FBgn0052332;gene _sym=CG32332;sym=CG32332;scaffold=AE003471;len=1538 Length = 1538 Score = 638 bits (322), Expect = 0.0 Identities = 328/330 (99%) Strand = Plus / Minus Query: 7 ggtattcttcttgtgctgcgacttgggcttacttcccagttttactaggaacacgtcgct 66 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1127 ggtattcttcttgtgctgcgacttggccttacttcccagttttactaggaacacgtcgct 1068 Query: 67 ggcggtctcctcgcaggtcttgtagcaaacctcgatacccttgcgccttgtgtccaaatt 126 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1067 gtcggtctcctcgcaggtcttgtagcaaacctcgatacccttgcgccttgtgtccaaatt 1008 Query: 127 gacacccttcatggtgtccatgatgtccttccgctcgacctgcatgcaacatgatcgctg 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1007 gacacccttcatggtgtccatgatgtccttccgctcgacctgcatgcaacatgatcgctg 948 Query: 187 gttctggacgggacagtgcgcgggcacgatgggatcggatccgccgcagagtcgctggcg 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 947 gttctggacgggacagtgcgcgggcacgatgggatcggatccgccgcagagtcgctggcg 888 Query: 247 gtagcagtcgaccttggcctcctggaagtcgcaggcctccttgatcttcgagaagggcac 306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 887 gtagcagtcgaccttggcctcctggaagtcgcaggcctccttgatcttcgagaagggcac 828 Query: 307 gtagtagttgtcggtctcgcaggcatcgtt 336 |||||||||||||||||||||||||||||| Sbjct: 827 gtagtagttgtcggtctcgcaggcatcgtt 798 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,810 Number of Sequences: 18737 Number of extensions: 10810 Number of successful extensions: 234 Number of sequences better than 1.0e-100: 5 Number of HSP's better than 0.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 229 Number of HSP's gapped (non-prelim): 5 length of query: 511 length of database: 41,270,998 effective HSP length: 17 effective length of query: 494 effective length of database: 40,952,469 effective search space: 20230519686 effective search space used: 20230519686 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG633063|BG633063 GH19447.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH19447 3 similar to GRHR: FBan0011325 'G protein linked receptor' located on: 2L 27A1-27A1;: 04/10/2001, mRNA sequence. (447 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value GRHR-RC feature: mRNA loc=2L:complement(6703498..6703958,6704563... 615 e-175 GRHR-RB feature: mRNA loc=2L:complement(6703508..6704891,6704956... 615 e-175 GRHR-RA feature: mRNA loc=2L:complement(6703498..6703958,6704554... 615 e-175 >GRHR-RC feature: mRNA loc=2L:complement(6703498..6703958,6704563..6704891, 6704956..6705444,6705582..6705681,6705791..6706063, 6706771..6706983, 6708242..6708399);ID=FBan0011325;gene_id=FBgn0025595;gene _sym=GRHR;sym=CG11325;scaffold=AE003614;len=2023 Length = 2023 Score = 615 bits (310), Expect = e-175 Identities = 322/326 (98%) Strand = Plus / Minus Query: 122 gactaactagagtatatctaacagtaaggggcattacatcttaatcgtatttcctagggg 181 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct: 1937 gactaactagagtatatctaacagtaagcggcattacatcttaatcgtatttcctaggcg 1878 Query: 182 atagctttgcctaccaagcattttgatggttcaatacaaagcgttttagaaatcgaaatt 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1877 atagctttgcctaccaagcattttgatggttcaatacaaagcgttttagaaatcgaaatt 1818 Query: 242 tatatctttgctgctttggggttcgtggacttgaaaacgatttaatttgtcactagctaa 301 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 1817 tatatctttgctgctttggcgttcgtggacttgaaaacgatttaatttgtcactagctaa 1758 Query: 302 atgcaaatgccaaaagaatttatgacgaaaattccgaactaagctggttagcaaattaaa 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1757 atgcaaatgccaaaagaatttatgacgaaaattccgaactaagctggttagcaaattaaa 1698 Query: 362 tgccctttgttccaagccgactcctccagttgaacattagcagatcgcttaattgatcca 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1697 tgccctttgttccaagccgactcctccagttgaacattagcagatcgcttaattgatcca 1638 Query: 422 gttgctctcggggctccatttgctcc 447 ||||||||||| |||||||||||||| Sbjct: 1637 gttgctctcggagctccatttgctcc 1612 >GRHR-RB feature: mRNA loc=2L:complement(6703508..6704891,6704956..6705444, 6705582..6705681,6705791..6706063,6706771..6706983, 6708242..6708399);ID=FBan0011325;gene_id=FBgn0025595;gene _sym=GRHR;sym=CG11325;scaffold=AE003614;len=2617 Length = 2617 Score = 615 bits (310), Expect = e-175 Identities = 322/326 (98%) Strand = Plus / Minus Query: 122 gactaactagagtatatctaacagtaaggggcattacatcttaatcgtatttcctagggg 181 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct: 2541 gactaactagagtatatctaacagtaagcggcattacatcttaatcgtatttcctaggcg 2482 Query: 182 atagctttgcctaccaagcattttgatggttcaatacaaagcgttttagaaatcgaaatt 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2481 atagctttgcctaccaagcattttgatggttcaatacaaagcgttttagaaatcgaaatt 2422 Query: 242 tatatctttgctgctttggggttcgtggacttgaaaacgatttaatttgtcactagctaa 301 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 2421 tatatctttgctgctttggcgttcgtggacttgaaaacgatttaatttgtcactagctaa 2362 Query: 302 atgcaaatgccaaaagaatttatgacgaaaattccgaactaagctggttagcaaattaaa 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2361 atgcaaatgccaaaagaatttatgacgaaaattccgaactaagctggttagcaaattaaa 2302 Query: 362 tgccctttgttccaagccgactcctccagttgaacattagcagatcgcttaattgatcca 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2301 tgccctttgttccaagccgactcctccagttgaacattagcagatcgcttaattgatcca 2242 Query: 422 gttgctctcggggctccatttgctcc 447 ||||||||||| |||||||||||||| Sbjct: 2241 gttgctctcggagctccatttgctcc 2216 >GRHR-RA feature: mRNA loc=2L:complement(6703498..6703958,6704554..6704891, 6704956..6705444,6705582..6705681,6705791..6706063, 6706771..6706983, 6708242..6708399);ID=FBan0011325;gene_id=FBgn0025595;gene _sym=GRHR;sym=CG11325;scaffold=AE003614;len=2032 Length = 2032 Score = 615 bits (310), Expect = e-175 Identities = 322/326 (98%) Strand = Plus / Minus Query: 122 gactaactagagtatatctaacagtaaggggcattacatcttaatcgtatttcctagggg 181 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct: 1946 gactaactagagtatatctaacagtaagcggcattacatcttaatcgtatttcctaggcg 1887 Query: 182 atagctttgcctaccaagcattttgatggttcaatacaaagcgttttagaaatcgaaatt 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1886 atagctttgcctaccaagcattttgatggttcaatacaaagcgttttagaaatcgaaatt 1827 Query: 242 tatatctttgctgctttggggttcgtggacttgaaaacgatttaatttgtcactagctaa 301 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 1826 tatatctttgctgctttggcgttcgtggacttgaaaacgatttaatttgtcactagctaa 1767 Query: 302 atgcaaatgccaaaagaatttatgacgaaaattccgaactaagctggttagcaaattaaa 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1766 atgcaaatgccaaaagaatttatgacgaaaattccgaactaagctggttagcaaattaaa 1707 Query: 362 tgccctttgttccaagccgactcctccagttgaacattagcagatcgcttaattgatcca 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1706 tgccctttgttccaagccgactcctccagttgaacattagcagatcgcttaattgatcca 1647 Query: 422 gttgctctcggggctccatttgctcc 447 ||||||||||| |||||||||||||| Sbjct: 1646 gttgctctcggagctccatttgctcc 1621 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7158 Number of Sequences: 18737 Number of extensions: 7158 Number of successful extensions: 546 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 543 Number of HSP's gapped (non-prelim): 3 length of query: 447 length of database: 41,270,998 effective HSP length: 17 effective length of query: 430 effective length of database: 40,952,469 effective search space: 17609561670 effective search space used: 17609561670 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG633105|BG633105 GH20248.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH20248 3 similar to CG5839: FBan0005839 'peptidase' located on: 3R 93F4-93F6;: 04/10/2001, mRNA sequence. (396 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31343-RA feature: mRNA loc=3R:join(17561955..17562541,17562872... 694 0.0 >CG31343-RA feature: mRNA loc=3R:join(17561955..17562541,17562872..17563027, 17563160..17563873,17564076..17565303, 17565374..17565687);ID=FBan0031343;gene_id=FBgn0051343;ge ne_sym=CG31343;sym=CG31343;scaffold=AE003736;len=2999 Length = 2999 Score = 694 bits (350), Expect = 0.0 Identities = 366/370 (98%), Gaps = 1/370 (0%) Strand = Plus / Minus Query: 27 aatctttaatgttgatttacgtcactttactgaatttatgtttaatacttgaccacgtga 86 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2988 aatctttattgttgatttacgtcactttactgaatttatgtttaatacttgaccacgtga 2929 Query: 87 agttatcttaatatagcctgaatagcaacagagccatcgcactgaccaggattgtggtga 146 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 2928 -gttatcttaatatagcctgaatagcaacagagccatcgcactgaccaggatcgtggtga 2870 Query: 147 tggatgaggtcagagagggactgccgttctcttttaaggaatcctcgatccagttgagca 206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2869 tggatgaggtcagagagggactgccgttctcttttaaggaatcctcgatccagttgagca 2810 Query: 207 ctggatcacgattaacttccaaccaagcgaagttggatgtgattctggagtcaatggtgg 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2809 ctggatcacgattaacttccaaccaagcgaagttggatgtgattctggagtcaatggtgg 2750 Query: 267 tgctcagatcatcattgatataactcggtccatcagcctccacaacatccaccaaagcgt 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2749 tgctcagatcatcattgatataactcggtccatcagcctccacaacatccaccaaagcgt 2690 Query: 327 taagcctcgtcttttgcttctcactgaccacataggtgggaatgccacgcagggcagcat 386 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 2689 taagcctcgtcttttgcttctcactgaccacataggtggcaatgccacgcagggcagcat 2630 Query: 387 ccaggggctt 396 |||||||||| Sbjct: 2629 ccaggggctt 2620 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8843 Number of Sequences: 18737 Number of extensions: 8843 Number of successful extensions: 683 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 681 Number of HSP's gapped (non-prelim): 1 length of query: 396 length of database: 41,270,998 effective HSP length: 17 effective length of query: 379 effective length of database: 40,952,469 effective search space: 15520985751 effective search space used: 15520985751 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG633187|BG633187 GH21860.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH21860 3 similar to CG2528: FBan0002528 'endopeptidase' located on: 2L 40A6-40A6;: 04/10/2001, mRNA sequence. (479 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG8776-RD feature: mRNA loc=2R:complement(7724295..7725098,77251... 371 e-102 >CG8776-RD feature: mRNA loc=2R:complement(7724295..7725098,7725170..7725334, 7725391..7725613,7725686..7725909,7772321..7772514, 7772566..7772642);ID=FBan0008776;gene_id=FBgn0033764;gen e_sym=CG8776;sym=CG8776;scaffold=AE003821;len=1687 Length = 1687 Score = 371 bits (187), Expect = e-102 Identities = 193/195 (98%) Strand = Plus / Plus Query: 165 gaccttatctgtggtctcccactaagggactattttaggaggcggggaacgatctcaagt 224 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 78 gaccttatctgtggtctcccactaagggactattttaggaggcggggaacgatctcaagt 137 Query: 225 gactgactcatgtagtgtgcacttaaattacatgtttttgagcaatgcacccatgtcgcc 284 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 138 gactgactcatgtagtgtgtacttaaattacatgtttttgagcaatgcacccatgtcgcc 197 Query: 285 ttagataacaaaatcctaaatataatttatcgctctcgattcatttacataagatatgaa 344 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 198 ttagataacaaaatcctaaatataatttatcgctctcgattcatttacataagatatgaa 257 Query: 345 cggggcccaaaattg 359 ||| ||||||||||| Sbjct: 258 cggagcccaaaattg 272 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9397 Number of Sequences: 18737 Number of extensions: 9397 Number of successful extensions: 253 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 251 Number of HSP's gapped (non-prelim): 2 length of query: 479 length of database: 41,270,998 effective HSP length: 17 effective length of query: 462 effective length of database: 40,952,469 effective search space: 18920040678 effective search space used: 18920040678 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG633230|BG633230 GH22794.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH22794 3 similar to serpin-27A: FBan0011331 'enzyme inhibitor' located on: 2L 26F5-26F5;: 04/10/2001, mRNA sequence. (482 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Spn27A-RA feature: mRNA loc=2L:complement(6663994..6665560);ID=F... 488 e-137 >Spn27A-RA feature: mRNA loc=2L:complement(6663994..6665560);ID=FBan0011331;gene_ id=FBgn0028990;gene_sym=Spn27A;sym=CG11331;scaffold=AE00 3614;len=1567 Length = 1567 Score = 488 bits (246), Expect = e-137 Identities = 246/246 (100%) Strand = Plus / Plus Query: 237 cggaacccagacgcaagtggagctggccaacacgcaaacagacattcgatcgcaaaataa 296 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 511 cggaacccagacgcaagtggagctggccaacacgcaaacagacattcgatcgcaaaataa 570 Query: 297 tgtgcgggagttctaccgcaagacacttaattccttcaagaaggagaaccagctccacga 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 571 tgtgcgggagttctaccgcaagacacttaattccttcaagaaggagaaccagctccacga 630 Query: 357 gacgctcagtgtgcgcaccaagctcttcacggacagcttcatcgagacacagcagaagtt 416 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 631 gacgctcagtgtgcgcaccaagctcttcacggacagcttcatcgagacacagcagaagtt 690 Query: 417 cacggccacgctgaaacacttctacgacagcgaggtggaggcgctagacttcaccaatcc 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 691 cacggccacgctgaaacacttctacgacagcgaggtggaggcgctagacttcaccaatcc 750 Query: 477 cgaggc 482 |||||| Sbjct: 751 cgaggc 756 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,472 Number of Sequences: 18737 Number of extensions: 12472 Number of successful extensions: 301 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 300 Number of HSP's gapped (non-prelim): 1 length of query: 482 length of database: 41,270,998 effective HSP length: 17 effective length of query: 465 effective length of database: 40,952,469 effective search space: 19042898085 effective search space used: 19042898085 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG633307|BG633307 GH24005.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH24005 3, mRNA sequence. (565 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8768 Number of Sequences: 18737 Number of extensions: 8768 Number of successful extensions: 115 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 115 Number of HSP's gapped (non-prelim): 0 length of query: 565 length of database: 41,270,998 effective HSP length: 17 effective length of query: 548 effective length of database: 40,952,469 effective search space: 22441953012 effective search space used: 22441953012 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG633313|BG633313 GH24057.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH24057 3 similar to CG9026: FBan0009026 'enzyme' located on: 2R 47F7-47F7;: 04/10/2001, mRNA sequence. (735 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG30022-RA feature: mRNA loc=2R:complement(6452026..6452200,6452... 716 0.0 >CG30022-RA feature: mRNA loc=2R:complement(6452026..6452200,6452255..6452618, 6452710..6452854, 6452918..6453487);ID=FBan0030022;gene_id=FBgn0050022;gen e_sym=CG30022;sym=CG30022;scaffold=AE003826;len=1254 Length = 1254 Score = 716 bits (361), Expect = 0.0 Identities = 368/369 (99%), Gaps = 1/369 (0%) Strand = Plus / Plus Query: 21 gtgctcaattaacagtaatttattaaattaggaactttatcaggtgccataagctagctc 80 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 203 gtgctcaattaacagtaatttattaaattaggaactttatcaggtgccataagctagctc 262 Query: 81 aatagtgattaaccaagaataagaaagtgcaacaacaataatcgagtatcgcattcaagg 140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 263 aatagtgattaaccaagaataagaaagtgcaacaacaataatcgagtatcgcattcaagg 322 Query: 141 ggtaaatagaaatctacacgaggcaaataattacacacgaagcgtatctatcgcgtatac 200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 323 ggtaaatagaaatctacacgaggcaaataattacacacgaagcgtatctatcgcgtatac 382 Query: 201 gaacctcaatcagatagaaatacgagtccaaaatgagaatagttggatccagtatgctgg 260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 383 gaacctcaatcagatagaaatacgagtccaaaatgagaatagttggatccagtatgctgg 442 Query: 261 cagccctcaagcggctatcaacgaaccaaccccccaccttggtcagtaacatccggtacc 320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 443 cagccctcaagcggctatcaacgaaccaaccccccaccttggtcagtaacatccggtacc 502 Query: 321 tgagctcgtttggaaccatgagcctgccggagcgccagccctctttctccagacttcttc 380 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 503 tgagctcgtttggaaccatgagcctgccggagcgccagccct-tttctccagacttcttc 561 Query: 381 ttccgtcaa 389 ||||||||| Sbjct: 562 ttccgtcaa 570 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,801 Number of Sequences: 18737 Number of extensions: 14801 Number of successful extensions: 311 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 307 Number of HSP's gapped (non-prelim): 3 length of query: 735 length of database: 41,270,998 effective HSP length: 17 effective length of query: 718 effective length of database: 40,952,469 effective search space: 29403872742 effective search space used: 29403872742 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG633345|BG633345 GH24992.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH24992 3 similar to RfC40: FBan0014999 located on: 3L 64A10-64A10;: 04/10/2001, mRNA sequence. (547 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value RfC40-RA feature: mRNA loc=3L:complement(4115479..4116392,411644... 1080 0.0 >RfC40-RA feature: mRNA loc=3L:complement(4115479..4116392, 4116445..4116665);ID=FBan0014999;gene_id=FBgn0015287;gene _sym=RfC40;sym=CG14999;scaffold=AE003480;len=1135 Length = 1135 Score = 1080 bits (545), Expect = 0.0 Identities = 545/545 (100%) Strand = Plus / Minus Query: 3 ctccaattttatttatctctgagatttctttaacctatagttcatattaaatctaatgct 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1104 ctccaattttatttatctctgagatttctttaacctatagttcatattaaatctaatgct 1045 Query: 63 tctcggcggcaatgcagagtttggccagaagggcggtgagctgcagcagcgagttgatac 122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1044 tctcggcggcaatgcagagtttggccagaagggcggtgagctgcagcagcgagttgatac 985 Query: 123 catcgataatcttcatgtgggtgattccgatctcacggataaagtccagcttcaaatgct 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 984 catcgataatcttcatgtgggtgattccgatctcacggataaagtccagcttcaaatgct 925 Query: 183 catcgatgttgatgcgcttgcagacacggaatatgttcgcaatgatgtcctccggcgagt 242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 924 catcgatgttgatgcgcttgcagacacggaatatgttcgcaatgatgtcctccggcgagt 865 Query: 243 atcccagcttccacagcttggccaggattttgtaggccttgtgtatgtcgttagcagcgc 302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 864 atcccagcttccacagcttggccaggattttgtaggccttgtgtatgtcgttagcagcgc 805 Query: 303 aatggtggatcatctcctctaggagctttgggtgcggctcgtcgcagaccttaaagacgt 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 804 aatggtggatcatctcctctaggagctttgggtgcggctcgtcgcagaccttaaagacgt 745 Query: 363 tctcagcggtgatgtcgccaaatccctgagcggtggactgcaggttgttcagtccctgtc 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 744 tctcagcggtgatgtcgccaaatccctgagcggtggactgcaggttgttcagtccctgtc 685 Query: 423 gcatatcaccttgggcagtgaatacgatggcctcaagtccgtcctccgtgtagttaagct 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 684 gcatatcaccttgggcagtgaatacgatggcctcaagtccgtcctccgtgtagttaagct 625 Query: 483 tctcccacttggccacctcgatgagcttggccagaacttgcgcatcggacagcttggtga 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 624 tctcccacttggccacctcgatgagcttggccagaacttgcgcatcggacagcttggtga 565 Query: 543 atcgt 547 ||||| Sbjct: 564 atcgt 560 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,990 Number of Sequences: 18737 Number of extensions: 15990 Number of successful extensions: 384 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 383 Number of HSP's gapped (non-prelim): 1 length of query: 547 length of database: 41,270,998 effective HSP length: 17 effective length of query: 530 effective length of database: 40,952,469 effective search space: 21704808570 effective search space used: 21704808570 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG633350|BG633350 GH25094.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH25094 3 similar to CG17450: FBan0017450 located on: U;: 04/10/2001, mRNA sequence. (695 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32819-RB feature: mRNA loc=X:complement(21290192..21290729,212... 714 0.0 CG32819-RA feature: mRNA loc=X:complement(21290192..21290729,212... 714 0.0 CG32820-RB feature: mRNA loc=X:complement(21284100..21284637,212... 706 0.0 CG32820-RA feature: mRNA loc=X:complement(21284100..21284637,212... 706 0.0 CG17450-RB feature: mRNA loc=X:complement(21278018..21278555,212... 698 0.0 CG17450-RA feature: mRNA loc=X:complement(21278018..21278555,212... 698 0.0 >CG32819-RB feature: mRNA loc=X:complement(21290192..21290729,21290890..21291477, 21291601..21292181);ID=FBan0032819;gene_id=FBgn0052819;ge ne_sym=CG32819;sym=CG32819;scaffold=AE003122;len=1707 Length = 1707 Score = 714 bits (360), Expect = 0.0 Identities = 369/372 (99%) Strand = Plus / Minus Query: 324 tcagtacttgatcagattgctgaccgggaaggagcgccggagactcatgcacttctctcg 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1707 tcagtacttgatcagattgctgaccgggaaggagcgccggagactcatgcacttctctcg 1648 Query: 384 gtcgatgaacagggcattgactttgttgcgcagatccacctccagggtgcagcgcgtctt 443 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1647 gtcgatgaacagggcattgactttgttgcgcagatccacctccagggtgcagcgcgtctt 1588 Query: 444 tagtaggccctgatgggtggcctccgcctccatcagcttgtggtgcagcgtctccacggc 503 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1587 tagtaggccctgatgggtggcctccgcctccatcagcttgtggtgcagcgtctccacggc 1528 Query: 504 accctggatgtcctgcacctcctggacgaggcggtcctgggcgtggtccttgcacagctc 563 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1527 accctggatgtcctgcacctcctggacgaggcggtcctgggcgtggtccttgcacagctc 1468 Query: 564 gacgccctcgcggtgggagcgggcctccagccgcgtctgggccactttcaacggaccgga 623 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1467 gacgccctcgcggtgggagcgggcctccagccgcgtctgggccactttcaacggcccgga 1408 Query: 624 cttgtactggatggccttctgcaggaggaagagatgcttctacatgtcgaacagctcctg 683 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1407 cttgtcctggatggccttctgcaggaggaagagatgcttctccatgtcgaacagctcctg 1348 Query: 684 ttggaccttctg 695 |||||||||||| Sbjct: 1347 ttggaccttctg 1336 >CG32819-RA feature: mRNA loc=X:complement(21290192..21290729,21290890..21291477, 21291601..21291953, 21292626..21293014);ID=FBan0032819;gene_id=FBgn0052819;ge ne_sym=CG32819;sym=CG32819;scaffold=AE003122;len=1868 Length = 1868 Score = 714 bits (360), Expect = 0.0 Identities = 369/372 (99%) Strand = Plus / Minus Query: 324 tcagtacttgatcagattgctgaccgggaaggagcgccggagactcatgcacttctctcg 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1868 tcagtacttgatcagattgctgaccgggaaggagcgccggagactcatgcacttctctcg 1809 Query: 384 gtcgatgaacagggcattgactttgttgcgcagatccacctccagggtgcagcgcgtctt 443 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1808 gtcgatgaacagggcattgactttgttgcgcagatccacctccagggtgcagcgcgtctt 1749 Query: 444 tagtaggccctgatgggtggcctccgcctccatcagcttgtggtgcagcgtctccacggc 503 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1748 tagtaggccctgatgggtggcctccgcctccatcagcttgtggtgcagcgtctccacggc 1689 Query: 504 accctggatgtcctgcacctcctggacgaggcggtcctgggcgtggtccttgcacagctc 563 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1688 accctggatgtcctgcacctcctggacgaggcggtcctgggcgtggtccttgcacagctc 1629 Query: 564 gacgccctcgcggtgggagcgggcctccagccgcgtctgggccactttcaacggaccgga 623 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1628 gacgccctcgcggtgggagcgggcctccagccgcgtctgggccactttcaacggcccgga 1569 Query: 624 cttgtactggatggccttctgcaggaggaagagatgcttctacatgtcgaacagctcctg 683 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1568 cttgtcctggatggccttctgcaggaggaagagatgcttctccatgtcgaacagctcctg 1509 Query: 684 ttggaccttctg 695 |||||||||||| Sbjct: 1508 ttggaccttctg 1497 >CG32820-RB feature: mRNA loc=X:complement(21284100..21284637,21284798..21285385, 21285509..21285945);ID=FBan0032820;gene_id=FBgn0052820;ge ne_sym=CG32820;sym=CG32820;scaffold=AE003122;len=1563 Length = 1563 Score = 706 bits (356), Expect = 0.0 Identities = 368/372 (98%) Strand = Plus / Minus Query: 324 tcagtacttgatcagattgctgaccgggaaggagcgccggagactcatgcacttctctcg 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1563 tcagtacttgatcagattgctgaccgggaaggagcgccggagactcatgcacttctctcg 1504 Query: 384 gtcgatgaacagggcattgactttgttgcgcagatccacctccagggtgcagcgcgtctt 443 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1503 gtcgatgaacagggcattgactttgttgcgcagatccacctccagggtgcagcgcgtctt 1444 Query: 444 tagtaggccctgatgggtggcctccgcctccatcagcttgtggtgcagcgtctccacggc 503 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1443 tagtaggccctgatgggtggcctccgcctccatcagcttgtggtgcagagtctccacggc 1384 Query: 504 accctggatgtcctgcacctcctggacgaggcggtcctgggcgtggtccttgcacagctc 563 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1383 accctggatgtcctgcacctcctggacgaggcggtcctgggcgtggtccttgcacagctc 1324 Query: 564 gacgccctcgcggtgggagcgggcctccagccgcgtctgggccactttcaacggaccgga 623 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1323 gacgccctcgcggtgggagcgggcctccagccgcgtctgggccactttcaacggcccgga 1264 Query: 624 cttgtactggatggccttctgcaggaggaagagatgcttctacatgtcgaacagctcctg 683 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1263 cttgtcctggatggccttctgcaggaggaagagatgcttctccatgtcgaacagctcctg 1204 Query: 684 ttggaccttctg 695 |||||||||||| Sbjct: 1203 ttggaccttctg 1192 >CG32820-RA feature: mRNA loc=X:complement(21284100..21284637,21284798..21285385, 21285509..21285861, 21286534..21286922);ID=FBan0032820;gene_id=FBgn0052820;ge ne_sym=CG32820;sym=CG32820;scaffold=AE003122;len=1868 Length = 1868 Score = 706 bits (356), Expect = 0.0 Identities = 368/372 (98%) Strand = Plus / Minus Query: 324 tcagtacttgatcagattgctgaccgggaaggagcgccggagactcatgcacttctctcg 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1868 tcagtacttgatcagattgctgaccgggaaggagcgccggagactcatgcacttctctcg 1809 Query: 384 gtcgatgaacagggcattgactttgttgcgcagatccacctccagggtgcagcgcgtctt 443 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1808 gtcgatgaacagggcattgactttgttgcgcagatccacctccagggtgcagcgcgtctt 1749 Query: 444 tagtaggccctgatgggtggcctccgcctccatcagcttgtggtgcagcgtctccacggc 503 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1748 tagtaggccctgatgggtggcctccgcctccatcagcttgtggtgcagagtctccacggc 1689 Query: 504 accctggatgtcctgcacctcctggacgaggcggtcctgggcgtggtccttgcacagctc 563 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1688 accctggatgtcctgcacctcctggacgaggcggtcctgggcgtggtccttgcacagctc 1629 Query: 564 gacgccctcgcggtgggagcgggcctccagccgcgtctgggccactttcaacggaccgga 623 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1628 gacgccctcgcggtgggagcgggcctccagccgcgtctgggccactttcaacggcccgga 1569 Query: 624 cttgtactggatggccttctgcaggaggaagagatgcttctacatgtcgaacagctcctg 683 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1568 cttgtcctggatggccttctgcaggaggaagagatgcttctccatgtcgaacagctcctg 1509 Query: 684 ttggaccttctg 695 |||||||||||| Sbjct: 1508 ttggaccttctg 1497 >CG17450-RB feature: mRNA loc=X:complement(21278018..21278555,21278713..21279300, 21279424..21279776, 21280442..21280768);ID=FBan0017450;gene_id=FBgn0040028;ge ne_sym=CG17450;sym=CG17450;scaffold=AE003122;len=1806 Length = 1806 Score = 698 bits (352), Expect = 0.0 Identities = 367/372 (98%) Strand = Plus / Minus Query: 324 tcagtacttgatcagattgctgaccgggaaggagcgccggagactcatgcacttctctcg 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1806 tcagtacttgatcagattgctgaccgggaaggagcgccggagactcatgcacttctctcg 1747 Query: 384 gtcgatgaacagggcattgactttgttgcgcagatccacctccagggtgcagcgcgtctt 443 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1746 gtcgatgaacagggcattgactttgttgcgcagatccacctccagggtgcagcgcgtctt 1687 Query: 444 tagtaggccctgatgggtggcctccgcctccatcagcttgtggtgcagcgtctccacggc 503 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1686 tagtaggccctgatgggtggcctccgcctccatcagcttgtggtgcagcgtctccactgc 1627 Query: 504 accctggatgtcctgcacctcctggacgaggcggtcctgggcgtggtccttgcacagctc 563 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1626 accctggatgtcctgcacctcctggacaaggcggtcctgggcgtggtccttgcacagctc 1567 Query: 564 gacgccctcgcggtgggagcgggcctccagccgcgtctgggccactttcaacggaccgga 623 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1566 gacgccctcgcggtgggagcgggcctccagccgcgtctgggccactttcaacggcccgga 1507 Query: 624 cttgtactggatggccttctgcaggaggaagagatgcttctacatgtcgaacagctcctg 683 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1506 cttgtcctggatggccttctgcaggaggaagagatgcttctccatgtcgaacagctcctg 1447 Query: 684 ttggaccttctg 695 |||||||||||| Sbjct: 1446 ttggaccttctg 1435 >CG17450-RA feature: mRNA loc=X:complement(21278018..21278555,21278713..21279300, 21279424..21280004);ID=FBan0017450;gene_id=FBgn0040028;ge ne_sym=CG17450;sym=CG17450;scaffold=AE003122;len=1707 Length = 1707 Score = 698 bits (352), Expect = 0.0 Identities = 367/372 (98%) Strand = Plus / Minus Query: 324 tcagtacttgatcagattgctgaccgggaaggagcgccggagactcatgcacttctctcg 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1707 tcagtacttgatcagattgctgaccgggaaggagcgccggagactcatgcacttctctcg 1648 Query: 384 gtcgatgaacagggcattgactttgttgcgcagatccacctccagggtgcagcgcgtctt 443 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1647 gtcgatgaacagggcattgactttgttgcgcagatccacctccagggtgcagcgcgtctt 1588 Query: 444 tagtaggccctgatgggtggcctccgcctccatcagcttgtggtgcagcgtctccacggc 503 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1587 tagtaggccctgatgggtggcctccgcctccatcagcttgtggtgcagcgtctccactgc 1528 Query: 504 accctggatgtcctgcacctcctggacgaggcggtcctgggcgtggtccttgcacagctc 563 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1527 accctggatgtcctgcacctcctggacaaggcggtcctgggcgtggtccttgcacagctc 1468 Query: 564 gacgccctcgcggtgggagcgggcctccagccgcgtctgggccactttcaacggaccgga 623 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1467 gacgccctcgcggtgggagcgggcctccagccgcgtctgggccactttcaacggcccgga 1408 Query: 624 cttgtactggatggccttctgcaggaggaagagatgcttctacatgtcgaacagctcctg 683 ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1407 cttgtcctggatggccttctgcaggaggaagagatgcttctccatgtcgaacagctcctg 1348 Query: 684 ttggaccttctg 695 |||||||||||| Sbjct: 1347 ttggaccttctg 1336 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 23,164 Number of Sequences: 18737 Number of extensions: 23164 Number of successful extensions: 623 Number of sequences better than 1.0e-100: 6 Number of HSP's better than 0.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 617 Number of HSP's gapped (non-prelim): 6 length of query: 695 length of database: 41,270,998 effective HSP length: 17 effective length of query: 678 effective length of database: 40,952,469 effective search space: 27765773982 effective search space used: 27765773982 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG633387|BG633387 GH25970.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH25970 3 similar to CG10019: FBan0010019 'transporter' located on: 2L 24B1-24B1;: 04/10/2001, mRNA sequence. (420 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG10019-RA feature: mRNA loc=2L:join(3738261..3738575,3738660..3... 591 e-168 >CG10019-RA feature: mRNA loc=2L:join(3738261..3738575,3738660..3739392, 3739686..3739858,3740159..3740300,3741175..3741348, 3741591..3741892,3741985..3742140,3742294..3742455, 3742567..3742738,3742803..3743284,3743367..3743530, 3744339..3744759);ID=FBan0010019;gene_id=FBgn0031568;gene _sym=CG10019;sym=CG10019;scaffold=AE003578;len=3396 Length = 3396 Score = 591 bits (298), Expect = e-168 Identities = 300/301 (99%) Strand = Plus / Minus Query: 120 ctacacggacgtggtgatttgctccacgaactgaacggcattgggtcggcatagggattg 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3396 ctacacggacgtggtgatttgctccacgaactgaacggcattgggtcggcatagggattg 3337 Query: 180 ggatcttttcagccggcattgtggattgtttcgcaatgctgagtttcccggccccggacc 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3336 ggatcttttcagccggcattgtggattgtttcgcaatgctgagtttcccggccccggacc 3277 Query: 240 cgaacccgcaccctggctgtggcgatggggggttctttgcagggaggcataggcgtgcgg 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3276 cgaacccgcaccctggctgtggcgatggggggttctttgcagggaggcataggcgtgcgg 3217 Query: 300 cacgtanatgaactcccgcgtgggggccgcaaaagtggcaggaccctgacgacagttaca 359 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3216 cacgtagatgaactcccgcgtgggggccgcaaaagtggcaggaccctgacgacagttaca 3157 Query: 360 ctgctgcgacatcgtggataaaccctctggaacactgcggctgcgggtggaactgggtgg 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3156 ctgctgcgacatcgtggataaaccctctggaacactgcggctgcgggtggaactgggtgg 3097 Query: 420 g 420 | Sbjct: 3096 g 3096 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8750 Number of Sequences: 18737 Number of extensions: 8750 Number of successful extensions: 556 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 555 Number of HSP's gapped (non-prelim): 1 length of query: 420 length of database: 41,270,998 effective HSP length: 17 effective length of query: 403 effective length of database: 40,952,469 effective search space: 16503845007 effective search space used: 16503845007 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG633498|BG633498 GH28401.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH28401 3 similar to AcCoAS: FBan0009390 'enzyme' located on: 3L 78C7-78C7;: 04/10/2001, mRNA sequence. (588 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value AcCoAS-RB feature: mRNA loc=3L:complement(21188484..21189429,211... 1142 0.0 AcCoAS-RA feature: mRNA loc=3L:complement(21188484..21189429,211... 1142 0.0 >AcCoAS-RB feature: mRNA loc=3L:complement(21188484..21189429,21189524..21189713, 21189775..21189943,21189999..21190153,21190227..21190965, 21193471..21193621);ID=FBan0009390;gene_id=FBgn0012034;ge ne_sym=AcCoAS;sym=CG9390;scaffold=AE003594;len=2350 Length = 2350 Score = 1142 bits (576), Expect = 0.0 Identities = 586/588 (99%), Gaps = 1/588 (0%) Strand = Plus / Minus Query: 1 aaattgtggcgacaattggaatcgtgtatatattttgtctcatatcaattctactaaaaa 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2349 aaattgtggcgacaattggaatcgtgtatatattttgtctcatatcaattctactaaaaa 2290 Query: 61 tacatacataagtaagatataattaaatttgtatcacaacgaattagcgagaacttaaac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2289 tacatacataagtaagatataattaaatttgtatcacaacgaattagcgagaacttaaac 2230 Query: 121 tacgactacaacgaagaaacaaaagaactggaaaatgtgtgcgtggtgagcatgtcaact 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2229 tacgactacaacgaagaaacaaaagaactggaaaatgtgtgcgtggtgagcatgtcaact 2170 Query: 181 acgatgaacaggcaagtacacaaaatcatatagacgatatataactgggatcggaaacca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2169 acgatgaacaggcaagtacacaaaatcatatagacgatatataactgggatcggaaacca 2110 Query: 241 tccagtcacttacttacgcacacgcttaggcttacgagctaagtagaatttgaaaggtgc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2109 tccagtcacttacttacgcacacgcttaggcttacgagctaagtagaatttgaaaggtgc 2050 Query: 301 taaccacgccgtagcccggaacggaacaaacattaagcagtgggtaattcatataagtag 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2049 taaccacgccgtagcccggaacggaacaaacattaagcagtgggtaattcatataagtag 1990 Query: 361 agggagatttacaggatacgtaatcgcgatacgtaagtggtggaaatgcgatggcaaagt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1989 agggagatttacaggatacgtaatcgcgatacgtaagtggtggaaatgcgatggcaaagt 1930 Query: 421 ggagtggtcagtgcaaccggagaaagccttgggttaagggatcctggctgctgccagttg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1929 ggagtggtcagtgcaaccggagaaagccttgggttaagggatcctggctgctgccagttg 1870 Query: 481 gtccaacagctaccatctacttggcctccactggccggttggcgaacagttgctccacaa 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1869 gtccaacagctaccatctacttggcctccactggccggttggcgaacagttgctccacaa 1810 Query: 541 tttgctcatcgggcaaggtagatgtgtcgccccacgttgcgatcgtta 588 |||||||||||| |||||||||||||||| |||||||||||||||||| Sbjct: 1809 tttgctcatcggccaaggtagatgtgtcg-cccacgttgcgatcgtta 1763 >AcCoAS-RA feature: mRNA loc=3L:complement(21188484..21189429,21189524..21189713, 21189775..21189943,21189999..21190153,21190227..21190965, 21196751..21197519);ID=FBan0009390;gene_id=FBgn0012034;ge ne_sym=AcCoAS;sym=CG9390;scaffold=AE003594;len=2968 Length = 2968 Score = 1142 bits (576), Expect = 0.0 Identities = 586/588 (99%), Gaps = 1/588 (0%) Strand = Plus / Minus Query: 1 aaattgtggcgacaattggaatcgtgtatatattttgtctcatatcaattctactaaaaa 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2967 aaattgtggcgacaattggaatcgtgtatatattttgtctcatatcaattctactaaaaa 2908 Query: 61 tacatacataagtaagatataattaaatttgtatcacaacgaattagcgagaacttaaac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2907 tacatacataagtaagatataattaaatttgtatcacaacgaattagcgagaacttaaac 2848 Query: 121 tacgactacaacgaagaaacaaaagaactggaaaatgtgtgcgtggtgagcatgtcaact 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2847 tacgactacaacgaagaaacaaaagaactggaaaatgtgtgcgtggtgagcatgtcaact 2788 Query: 181 acgatgaacaggcaagtacacaaaatcatatagacgatatataactgggatcggaaacca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2787 acgatgaacaggcaagtacacaaaatcatatagacgatatataactgggatcggaaacca 2728 Query: 241 tccagtcacttacttacgcacacgcttaggcttacgagctaagtagaatttgaaaggtgc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2727 tccagtcacttacttacgcacacgcttaggcttacgagctaagtagaatttgaaaggtgc 2668 Query: 301 taaccacgccgtagcccggaacggaacaaacattaagcagtgggtaattcatataagtag 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2667 taaccacgccgtagcccggaacggaacaaacattaagcagtgggtaattcatataagtag 2608 Query: 361 agggagatttacaggatacgtaatcgcgatacgtaagtggtggaaatgcgatggcaaagt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2607 agggagatttacaggatacgtaatcgcgatacgtaagtggtggaaatgcgatggcaaagt 2548 Query: 421 ggagtggtcagtgcaaccggagaaagccttgggttaagggatcctggctgctgccagttg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2547 ggagtggtcagtgcaaccggagaaagccttgggttaagggatcctggctgctgccagttg 2488 Query: 481 gtccaacagctaccatctacttggcctccactggccggttggcgaacagttgctccacaa 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2487 gtccaacagctaccatctacttggcctccactggccggttggcgaacagttgctccacaa 2428 Query: 541 tttgctcatcgggcaaggtagatgtgtcgccccacgttgcgatcgtta 588 |||||||||||| |||||||||||||||| |||||||||||||||||| Sbjct: 2427 tttgctcatcggccaaggtagatgtgtcg-cccacgttgcgatcgtta 2381 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,613 Number of Sequences: 18737 Number of extensions: 13613 Number of successful extensions: 349 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 345 Number of HSP's gapped (non-prelim): 2 length of query: 588 length of database: 41,270,998 effective HSP length: 17 effective length of query: 571 effective length of database: 40,952,469 effective search space: 23383859799 effective search space used: 23383859799 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG637636|BG637636 GM14784.3prime GM Drosophila melanogaster ovary pOT2 Drosophila melanogaster cDNA clone GM14784 3 similar to CG2803: FBan0002803 'ligand binding or carrier' located on: 2R 60E5-60E5;: 04/10/2001, mRNA sequence. (584 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Tina-1-RA feature: mRNA loc=2R:complement(19984192..19984624,199... 1134 0.0 >Tina-1-RA feature: mRNA loc=2R:complement(19984192..19984624,19984692..19985011, 19985820..19985979);ID=FBan0002803;gene_id=FBgn0035083;g ene_sym=Tina-1;sym=CG2803;scaffold=AE003465;len=913 Length = 913 Score = 1134 bits (572), Expect = 0.0 Identities = 581/584 (99%) Strand = Plus / Minus Query: 1 attttaaattgcttcagtttatttgctttgtttatcgaaaactatcaaattacagactac 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 905 attttaaattgcttcagtttatttgctttgtttgtcgaaaactatcaaattacagactac 846 Query: 61 gtttgctaaaacctaaataatgcgtatggtacatatgtatcagtttatatcgttttccca 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 845 gtttgctaaaacctaaataatgcgtatggtacatatgtatcagtttatatcgtttgccca 786 Query: 121 tatatacgggtatatatcgatcagtacatctgcgtctgcaagtacggtcttaaaatgcaa 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 785 tatatacgggtatatatcgatcagtacatctgcgtctgcaagtacggtcttaaaatgcaa 726 Query: 181 ctacggtaacataagattagtggccaggctatccagagaacatccaaacaaacgggcgac 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 725 ctacggtaacataagattagtggccaggctatccagagaacatccaaacaaacgggcgac 666 Query: 241 accacaacccacgttattagttctgggcctcgtaggtgaggtcgtcctgggccggatgct 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 665 accacaacccacgttattagttctgggcctcgtaggtgaggtcgtcctgggccggatgct 606 Query: 301 tgtgggtgcggcgatggcgcataatgtatggatgggtggttgagttctcgtagctggaca 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 605 tgtgggtgcggcgatggcgcataatgtatggatgggtggttgagttctcgtagctggaca 546 Query: 361 agtagcgcagactaagtaggttctccgggtacttctgcagcaggtacacccagcatggaa 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 545 agtagcgcagactaagtaggttctccgggtacttctgcagcaggtacacccagcatggaa 486 Query: 421 cggttccttctccaacgccaatgttcatatcgtgcatctcgcgagtgtagatctcctcgc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 485 cggttccttctccaacgccaatgttcatatcgtgcatctcgcgagtgtagatctcctcgc 426 Query: 481 aatcctccaggttgtccagggaattcagcattcgatcgtccacctcgtagatctcccctg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 425 aatcctccaggttgtccagggaattcagcattcgatcgtccacctcgtagatctcccctg 366 Query: 541 ttacgtaatatcccactccgggcttgttcaacaggaagggaatg 584 |||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 365 ttacgtaatatcccactccgggcttgttcagcaggaagggaatg 322 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,418 Number of Sequences: 18737 Number of extensions: 12418 Number of successful extensions: 271 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 270 Number of HSP's gapped (non-prelim): 1 length of query: 584 length of database: 41,270,998 effective HSP length: 17 effective length of query: 567 effective length of database: 40,952,469 effective search space: 23220049923 effective search space used: 23220049923 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG637698|BG637698 HL07869.3prime HL Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone HL07869 3 similar to CG1583: FBan0001583 'phospholipase A2' located on: X 7D14-7D14;: 04/10/2001, mRNA sequence. (464 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7650 Number of Sequences: 18737 Number of extensions: 7650 Number of successful extensions: 155 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 155 Number of HSP's gapped (non-prelim): 0 length of query: 464 length of database: 41,270,998 effective HSP length: 17 effective length of query: 447 effective length of database: 40,952,469 effective search space: 18305753643 effective search space used: 18305753643 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG637745|BG637745 LD02396.3prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD02396 3, mRNA sequence. (492 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value AlkB-RA feature: mRNA loc=X:complement(15589148..15589551,155896... 973 0.0 >AlkB-RA feature: mRNA loc=X:complement(15589148..15589551,15589614..15590155, 15590207..15590501);ID=FBan0033250;gene_id=FBgn0053250;ge ne_sym=AlkB;sym=CG33250;scaffold=AE003500;len=1241 Length = 1241 Score = 973 bits (491), Expect = 0.0 Identities = 491/491 (100%) Strand = Plus / Minus Query: 1 caattgaaatgcagttttttattttgtaaaatactataaaattaaaaatttttccaagga 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1241 caattgaaatgcagttttttattttgtaaaatactataaaattaaaaatttttccaagga 1182 Query: 61 ggggttaaagcttaacatctcctggatttaaaacttgacgtatattaatattaatacgtg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1181 ggggttaaagcttaacatctcctggatttaaaacttgacgtatattaatattaatacgtg 1122 Query: 121 aatcgtccatatatctcgaaaaaggctcccaaaattgagggttgccaacatcatgaaata 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1121 aatcgtccatatatctcgaaaaaggctcccaaaattgagggttgccaacatcatgaaata 1062 Query: 181 aatctttatcaattgtacgcgttttaatatctgcattatcgacatcttcaattatcagtg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1061 aatctttatcaattgtacgcgttttaatatctgcattatcgacatcttcaattatcagtg 1002 Query: 241 ataaagtcgcggaagcctgagttttgatgatacgaggaactgcgtgatagcatagacgcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1001 ataaagtcgcggaagcctgagttttgatgatacgaggaactgcgtgatagcatagacgcg 942 Query: 301 attctccggacattatcataacgtccccggattgaaggtagatagcggttggcttttctt 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 941 attctccggacattatcataacgtccccggattgaaggtagatagcggttggcttttctt 882 Query: 361 ctaaagatcttccaccaattagaaatattgcagtctgaccaaaactaaaagaaaacaaag 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 881 ctaaagatcttccaccaattagaaatattgcagtctgaccaaaactaaaagaaaacaaag 822 Query: 421 gggccgatttgtttggttcagagtgatctgtgtgacccgataacgtactaccaactggat 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 821 gggccgatttgtttggttcagagtgatctgtgtgacccgataacgtactaccaactggat 762 Query: 481 agtaatttaca 491 ||||||||||| Sbjct: 761 agtaatttaca 751 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,042 Number of Sequences: 18737 Number of extensions: 11042 Number of successful extensions: 271 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 269 Number of HSP's gapped (non-prelim): 2 length of query: 492 length of database: 41,270,998 effective HSP length: 17 effective length of query: 475 effective length of database: 40,952,469 effective search space: 19452422775 effective search space used: 19452422775 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG637809|BG637809 LD04705.3prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD04705 3 similar to CG4049: FBan0004049 'enzyme' located on: 2R 60B5-60B6;: 04/10/2001, mRNA sequence. (457 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG4049-RB feature: mRNA loc=2R:complement(19151474..19152219,191... 870 0.0 CG4049-RA feature: mRNA loc=2R:complement(19151474..19152219,191... 870 0.0 >CG4049-RB feature: mRNA loc=2R:complement(19151474..19152219,19152269..19152502, 19152560..19152671,19152737..19153406,19153470..19153637, 19154479..19156839, 19157573..19157838);ID=FBan0004049;gene_id=FBgn0034976;ge ne_sym=CG4049;sym=CG4049;scaffold=AE003463;len=4557 Length = 4557 Score = 870 bits (439), Expect = 0.0 Identities = 452/455 (99%), Gaps = 1/455 (0%) Strand = Plus / Minus Query: 1 aggcgatgccaaactcaaggaagaatctgcacttggttccacaatgggcgtggcagcgcc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 2577 aggcgatgccaaactcaaggaagaatctgcacttggctccacaatgggcgtggcagcgcc 2518 Query: 61 cttggtaacctcctcgtcgatttctaaatctaaatcagtctcacattttttcagaaaatt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2517 cttggtaacctcctcgtcgatttctaaatctaaatcagtctcacattttttcagaaaatt 2458 Query: 121 atacagaacgtctggatggttccagattttacagcaaacagcaaaggccttcagcggatt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2457 atacagaacgtctggatggttccagattttacagcaaacagcaaaggccttcagcggatt 2398 Query: 181 tggaaaggcctttgtgcgcaccacatccgtcatgaaggtgtcgtagagcttgcgctgaaa 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2397 tggaaaggcctttgtgcgcaccacatccgtcatgaaggtgtcgtagagcttgcgctgaaa 2338 Query: 241 ggcggtcattttgaccaggatgacatactcgtacttctgaggcagcgtcagctgcagcac 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2337 ggcggtcattttgaccaggatgacatactcgtacttctgaggcagcgtcagctgcagcac 2278 Query: 301 agtgtgcgatcgccgctgaacgaatcccagcagcagggagtgcagcacgtgcgccctgta 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2277 agtgtgcgatcgccgctgaacgaatcccagcagcagggagtgcagcacgtgcgccctgta 2218 Query: 361 gcgcattagcttgatgtcatcgggcgtggagtccacgcactggccattcgggatgggaac 420 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct: 2217 gcgcattagcttgatgtcatcgggcgtggagtccacgcactggccattctggatggg-ac 2159 Query: 421 gctcgaacatgttgcagaactccgtgcgggtgccc 455 ||||||||||||||||||||||||||||||||||| Sbjct: 2158 gctcgaacatgttgcagaactccgtgcgggtgccc 2124 >CG4049-RA feature: mRNA loc=2R:complement(19151474..19152219,19152269..19152502, 19152560..19152671,19152737..19153406,19153834..19154334, 19154479..19156839, 19157573..19157838);ID=FBan0004049;gene_id=FBgn0034976;ge ne_sym=CG4049;sym=CG4049;scaffold=AE003463;len=4890 Length = 4890 Score = 870 bits (439), Expect = 0.0 Identities = 452/455 (99%), Gaps = 1/455 (0%) Strand = Plus / Minus Query: 1 aggcgatgccaaactcaaggaagaatctgcacttggttccacaatgggcgtggcagcgcc 60 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 2577 aggcgatgccaaactcaaggaagaatctgcacttggctccacaatgggcgtggcagcgcc 2518 Query: 61 cttggtaacctcctcgtcgatttctaaatctaaatcagtctcacattttttcagaaaatt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2517 cttggtaacctcctcgtcgatttctaaatctaaatcagtctcacattttttcagaaaatt 2458 Query: 121 atacagaacgtctggatggttccagattttacagcaaacagcaaaggccttcagcggatt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2457 atacagaacgtctggatggttccagattttacagcaaacagcaaaggccttcagcggatt 2398 Query: 181 tggaaaggcctttgtgcgcaccacatccgtcatgaaggtgtcgtagagcttgcgctgaaa 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2397 tggaaaggcctttgtgcgcaccacatccgtcatgaaggtgtcgtagagcttgcgctgaaa 2338 Query: 241 ggcggtcattttgaccaggatgacatactcgtacttctgaggcagcgtcagctgcagcac 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2337 ggcggtcattttgaccaggatgacatactcgtacttctgaggcagcgtcagctgcagcac 2278 Query: 301 agtgtgcgatcgccgctgaacgaatcccagcagcagggagtgcagcacgtgcgccctgta 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2277 agtgtgcgatcgccgctgaacgaatcccagcagcagggagtgcagcacgtgcgccctgta 2218 Query: 361 gcgcattagcttgatgtcatcgggcgtggagtccacgcactggccattcgggatgggaac 420 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || Sbjct: 2217 gcgcattagcttgatgtcatcgggcgtggagtccacgcactggccattctggatggg-ac 2159 Query: 421 gctcgaacatgttgcagaactccgtgcgggtgccc 455 ||||||||||||||||||||||||||||||||||| Sbjct: 2158 gctcgaacatgttgcagaactccgtgcgggtgccc 2124 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,532 Number of Sequences: 18737 Number of extensions: 13532 Number of successful extensions: 364 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 360 Number of HSP's gapped (non-prelim): 2 length of query: 457 length of database: 41,270,998 effective HSP length: 17 effective length of query: 440 effective length of database: 40,952,469 effective search space: 18019086360 effective search space used: 18019086360 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG637911|BG637911 LD08455.3prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD08455 3 similar to CG17450: FBan0017450 GO:[] located on: U;: 08/13/2002, mRNA sequence. (591 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32819-RB feature: mRNA loc=X:complement(21290192..21290729,212... 438 e-122 CG32819-RA feature: mRNA loc=X:complement(21290192..21290729,212... 438 e-122 CG17450-RB feature: mRNA loc=X:complement(21278018..21278555,212... 430 e-120 CG17450-RA feature: mRNA loc=X:complement(21278018..21278555,212... 430 e-120 CG32820-RB feature: mRNA loc=X:complement(21284100..21284637,212... 430 e-120 CG32820-RA feature: mRNA loc=X:complement(21284100..21284637,212... 430 e-120 >CG32819-RB feature: mRNA loc=X:complement(21290192..21290729,21290890..21291477, 21291601..21292181);ID=FBan0032819;gene_id=FBgn0052819;ge ne_sym=CG32819;sym=CG32819;scaffold=AE003122;len=1707 Length = 1707 Score = 438 bits (221), Expect = e-122 Identities = 256/267 (95%), Gaps = 1/267 (0%) Strand = Plus / Minus Query: 325 tcagtacttgatcagattgctgaccgggaaggagcgccggagactcatgcacttctcgtc 384 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1707 tcagtacttgatcagattgctgaccgggaaggagcgccggagactcatgcacttctc-tc 1649 Query: 385 ggtcnatgaacagggcattgactttgttgcgcagatccacctccagggtgcagcgcgtct 444 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1648 ggtcgatgaacagggcattgactttgttgcgcagatccacctccagggtgcagcgcgtct 1589 Query: 445 ttagtaggccctgatgggtggcctccgcctccatcagcttgtggtgcagcgtctccacgg 504 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1588 ttagtaggccctgatgggtggcctccgcctccatcagcttgtggtgcagcgtctccacgg 1529 Query: 505 caccctggatttcctgcacctcctgnactagggggtcctgggggtggtccttgcaaaact 564 |||||||||| |||||||||||||| || ||| ||||||||| |||||||||||| | || Sbjct: 1528 caccctggatgtcctgcacctcctggacgaggcggtcctgggcgtggtccttgcacagct 1469 Query: 565 cgaccccctcgcggtgggaacgggcct 591 |||| |||||||||||||| ||||||| Sbjct: 1468 cgacgccctcgcggtgggagcgggcct 1442 >CG32819-RA feature: mRNA loc=X:complement(21290192..21290729,21290890..21291477, 21291601..21291953, 21292626..21293014);ID=FBan0032819;gene_id=FBgn0052819;ge ne_sym=CG32819;sym=CG32819;scaffold=AE003122;len=1868 Length = 1868 Score = 438 bits (221), Expect = e-122 Identities = 256/267 (95%), Gaps = 1/267 (0%) Strand = Plus / Minus Query: 325 tcagtacttgatcagattgctgaccgggaaggagcgccggagactcatgcacttctcgtc 384 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1868 tcagtacttgatcagattgctgaccgggaaggagcgccggagactcatgcacttctc-tc 1810 Query: 385 ggtcnatgaacagggcattgactttgttgcgcagatccacctccagggtgcagcgcgtct 444 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1809 ggtcgatgaacagggcattgactttgttgcgcagatccacctccagggtgcagcgcgtct 1750 Query: 445 ttagtaggccctgatgggtggcctccgcctccatcagcttgtggtgcagcgtctccacgg 504 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1749 ttagtaggccctgatgggtggcctccgcctccatcagcttgtggtgcagcgtctccacgg 1690 Query: 505 caccctggatttcctgcacctcctgnactagggggtcctgggggtggtccttgcaaaact 564 |||||||||| |||||||||||||| || ||| ||||||||| |||||||||||| | || Sbjct: 1689 caccctggatgtcctgcacctcctggacgaggcggtcctgggcgtggtccttgcacagct 1630 Query: 565 cgaccccctcgcggtgggaacgggcct 591 |||| |||||||||||||| ||||||| Sbjct: 1629 cgacgccctcgcggtgggagcgggcct 1603 >CG17450-RB feature: mRNA loc=X:complement(21278018..21278555,21278713..21279300, 21279424..21279776, 21280442..21280768);ID=FBan0017450;gene_id=FBgn0040028;ge ne_sym=CG17450;sym=CG17450;scaffold=AE003122;len=1806 Length = 1806 Score = 430 bits (217), Expect = e-120 Identities = 255/267 (95%), Gaps = 1/267 (0%) Strand = Plus / Minus Query: 325 tcagtacttgatcagattgctgaccgggaaggagcgccggagactcatgcacttctcgtc 384 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1806 tcagtacttgatcagattgctgaccgggaaggagcgccggagactcatgcacttctc-tc 1748 Query: 385 ggtcnatgaacagggcattgactttgttgcgcagatccacctccagggtgcagcgcgtct 444 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1747 ggtcgatgaacagggcattgactttgttgcgcagatccacctccagggtgcagcgcgtct 1688 Query: 445 ttagtaggccctgatgggtggcctccgcctccatcagcttgtggtgcagcgtctccacgg 504 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 1687 ttagtaggccctgatgggtggcctccgcctccatcagcttgtggtgcagcgtctccactg 1628 Query: 505 caccctggatttcctgcacctcctgnactagggggtcctgggggtggtccttgcaaaact 564 |||||||||| |||||||||||||| || ||| ||||||||| |||||||||||| | || Sbjct: 1627 caccctggatgtcctgcacctcctggacaaggcggtcctgggcgtggtccttgcacagct 1568 Query: 565 cgaccccctcgcggtgggaacgggcct 591 |||| |||||||||||||| ||||||| Sbjct: 1567 cgacgccctcgcggtgggagcgggcct 1541 >CG17450-RA feature: mRNA loc=X:complement(21278018..21278555,21278713..21279300, 21279424..21280004);ID=FBan0017450;gene_id=FBgn0040028;ge ne_sym=CG17450;sym=CG17450;scaffold=AE003122;len=1707 Length = 1707 Score = 430 bits (217), Expect = e-120 Identities = 255/267 (95%), Gaps = 1/267 (0%) Strand = Plus / Minus Query: 325 tcagtacttgatcagattgctgaccgggaaggagcgccggagactcatgcacttctcgtc 384 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1707 tcagtacttgatcagattgctgaccgggaaggagcgccggagactcatgcacttctc-tc 1649 Query: 385 ggtcnatgaacagggcattgactttgttgcgcagatccacctccagggtgcagcgcgtct 444 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1648 ggtcgatgaacagggcattgactttgttgcgcagatccacctccagggtgcagcgcgtct 1589 Query: 445 ttagtaggccctgatgggtggcctccgcctccatcagcttgtggtgcagcgtctccacgg 504 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 1588 ttagtaggccctgatgggtggcctccgcctccatcagcttgtggtgcagcgtctccactg 1529 Query: 505 caccctggatttcctgcacctcctgnactagggggtcctgggggtggtccttgcaaaact 564 |||||||||| |||||||||||||| || ||| ||||||||| |||||||||||| | || Sbjct: 1528 caccctggatgtcctgcacctcctggacaaggcggtcctgggcgtggtccttgcacagct 1469 Query: 565 cgaccccctcgcggtgggaacgggcct 591 |||| |||||||||||||| ||||||| Sbjct: 1468 cgacgccctcgcggtgggagcgggcct 1442 >CG32820-RB feature: mRNA loc=X:complement(21284100..21284637,21284798..21285385, 21285509..21285945);ID=FBan0032820;gene_id=FBgn0052820;ge ne_sym=CG32820;sym=CG32820;scaffold=AE003122;len=1563 Length = 1563 Score = 430 bits (217), Expect = e-120 Identities = 255/267 (95%), Gaps = 1/267 (0%) Strand = Plus / Minus Query: 325 tcagtacttgatcagattgctgaccgggaaggagcgccggagactcatgcacttctcgtc 384 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1563 tcagtacttgatcagattgctgaccgggaaggagcgccggagactcatgcacttctc-tc 1505 Query: 385 ggtcnatgaacagggcattgactttgttgcgcagatccacctccagggtgcagcgcgtct 444 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1504 ggtcgatgaacagggcattgactttgttgcgcagatccacctccagggtgcagcgcgtct 1445 Query: 445 ttagtaggccctgatgggtggcctccgcctccatcagcttgtggtgcagcgtctccacgg 504 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 1444 ttagtaggccctgatgggtggcctccgcctccatcagcttgtggtgcagagtctccacgg 1385 Query: 505 caccctggatttcctgcacctcctgnactagggggtcctgggggtggtccttgcaaaact 564 |||||||||| |||||||||||||| || ||| ||||||||| |||||||||||| | || Sbjct: 1384 caccctggatgtcctgcacctcctggacgaggcggtcctgggcgtggtccttgcacagct 1325 Query: 565 cgaccccctcgcggtgggaacgggcct 591 |||| |||||||||||||| ||||||| Sbjct: 1324 cgacgccctcgcggtgggagcgggcct 1298 >CG32820-RA feature: mRNA loc=X:complement(21284100..21284637,21284798..21285385, 21285509..21285861, 21286534..21286922);ID=FBan0032820;gene_id=FBgn0052820;ge ne_sym=CG32820;sym=CG32820;scaffold=AE003122;len=1868 Length = 1868 Score = 430 bits (217), Expect = e-120 Identities = 255/267 (95%), Gaps = 1/267 (0%) Strand = Plus / Minus Query: 325 tcagtacttgatcagattgctgaccgggaaggagcgccggagactcatgcacttctcgtc 384 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1868 tcagtacttgatcagattgctgaccgggaaggagcgccggagactcatgcacttctc-tc 1810 Query: 385 ggtcnatgaacagggcattgactttgttgcgcagatccacctccagggtgcagcgcgtct 444 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1809 ggtcgatgaacagggcattgactttgttgcgcagatccacctccagggtgcagcgcgtct 1750 Query: 445 ttagtaggccctgatgggtggcctccgcctccatcagcttgtggtgcagcgtctccacgg 504 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 1749 ttagtaggccctgatgggtggcctccgcctccatcagcttgtggtgcagagtctccacgg 1690 Query: 505 caccctggatttcctgcacctcctgnactagggggtcctgggggtggtccttgcaaaact 564 |||||||||| |||||||||||||| || ||| ||||||||| |||||||||||| | || Sbjct: 1689 caccctggatgtcctgcacctcctggacgaggcggtcctgggcgtggtccttgcacagct 1630 Query: 565 cgaccccctcgcggtgggaacgggcct 591 |||| |||||||||||||| ||||||| Sbjct: 1629 cgacgccctcgcggtgggagcgggcct 1603 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 18,349 Number of Sequences: 18737 Number of extensions: 18349 Number of successful extensions: 529 Number of sequences better than 1.0e-100: 6 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 523 Number of HSP's gapped (non-prelim): 6 length of query: 591 length of database: 41,270,998 effective HSP length: 17 effective length of query: 574 effective length of database: 40,952,469 effective search space: 23506717206 effective search space used: 23506717206 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AQ025829|AQ025829 l(2)k07332 Drosophila melanogaster P lethal line Drosophila melanogaster genomic Sequence recovered from 3' end of P element, genomic survey sequence. (269 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6379 Number of Sequences: 18737 Number of extensions: 6379 Number of successful extensions: 454 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 454 Number of HSP's gapped (non-prelim): 0 length of query: 269 length of database: 41,270,998 effective HSP length: 16 effective length of query: 253 effective length of database: 40,971,206 effective search space: 10365715118 effective search space used: 10365715118 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AF167437|AF167437 Drosophila melanogaster P neogene insertion site sequence. (2918 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG4049-RB feature: mRNA loc=2R:complement(19151474..19152219,191... 1086 0.0 CG4049-RA feature: mRNA loc=2R:complement(19151474..19152219,191... 1086 0.0 BEST:GH04269-RA feature: mRNA loc=2R:join(19158235..19158371,191... 965 0.0 >CG4049-RB feature: mRNA loc=2R:complement(19151474..19152219,19152269..19152502, 19152560..19152671,19152737..19153406,19153470..19153637, 19154479..19156839, 19157573..19157838);ID=FBan0004049;gene_id=FBgn0034976;ge ne_sym=CG4049;sym=CG4049;scaffold=AE003463;len=4557 Length = 4557 Score = 1086 bits (548), Expect = 0.0 Identities = 551/552 (99%) Strand = Plus / Plus Query: 2367 acatccacagcaacagccgcagcaacatccacagcaacagacgcagcaaccgccacagct 2426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 522 acatccacagcaacagccgcagcaacatccacagcaacagacgcagcaaccgccacagct 581 Query: 2427 gcagccgcaacaacatccacaggcacagatacagcctcccattcccgtacccatatccac 2486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 582 gcagccgcaacaacatccacaggcacagatacagcctcccattcccgtacccatatccac 641 Query: 2487 acccatggaagggactatggaagttcccgttaagatgccagaatactgccccgagacaag 2546 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 642 acccatggaagggactatggaagttcccgttaagatgccagaatactgccccgagacaag 701 Query: 2547 ccagcccgtcgagcctgaccgggtcattaatcccttggccgaggtagccaaaaacacagt 2606 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 702 ccagcccgtcgagcctgaccgggtcattaatcccttggccgaggtagccaaaaacacagt 761 Query: 2607 accttatggccacaagcgcaagaactcggcgggagaggaccaggcggcaaacaagaaact 2666 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 762 accttatggccacaagcgcaagaactcggcgggagaggaccaggcggcaaacaagaaact 821 Query: 2667 cagtatggcggccgccgaggagaagaagaacagtcacctgcggaagaacatccgcgacgt 2726 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 822 cagtatggcggccgccgaggagaagaagaacagtcacctgcggaagaacatccgcgacgt 881 Query: 2727 gatgaacgagaacaatctggacacaaccacgctggcggcccagcgagaggaatcggaacg 2786 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 882 gatgaacgagaacaatctggacacaaccacgctggcggcccagcgagaggaatcggaacg 941 Query: 2787 cttggctcgcgtttctggtcaacagaagtcaatgcgcgagatccagaagcaggtggtgca 2846 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 942 cttggctcgcgttgctggtcaacagaagtcaatgcgcgagatccagaagcaggtggtgca 1001 Query: 2847 caagcagatcttccgcatcctgcagctggacgaaagcgaaggcatcgagagctgtgccgt 2906 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1002 caagcagatcttccgcatcctgcagctggacgaaagcgaaggcatcgagagctgtgccgt 1061 Query: 2907 ggccaatcccgt 2918 |||||||||||| Sbjct: 1062 ggccaatcccgt 1073 Score = 521 bits (263), Expect = e-146 Identities = 266/267 (99%) Strand = Plus / Plus Query: 1109 tatatacaaacgtacatgttgaaaacagcgagaaaataaatcgagaataacattttaaat 1168 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tatatacaaacgtacatgttgaaaacagcgagaaaataaatcgagaataacattttaaat 60 Query: 1169 taatataataacaatcggaaggacttggtcctcgcaatcacagtggcgcacgcgataagc 1228 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 taatataataacaatcggaaggacttggtcctcgcaatcacagtggcgcacgcgataagc 120 Query: 1229 caagtatctcaagaacgttcaccaattaagagaacctcccaattgtgcacatagaaaaat 1288 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 121 caagtatctcaagaacgttcaccaattaagagaacctcccaatcgtgcacatagaaaaat 180 Query: 1289 atccatatgtataaaataacaataattaagaacctgcgttgttaattcttttatctgaaa 1348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 atccatatgtataaaataacaataattaagaacctgcgttgttaattcttttatctgaaa 240 Query: 1349 accccgttcgccggctgcatgtaaatg 1375 ||||||||||||||||||||||||||| Sbjct: 241 accccgttcgccggctgcatgtaaatg 267 >CG4049-RA feature: mRNA loc=2R:complement(19151474..19152219,19152269..19152502, 19152560..19152671,19152737..19153406,19153834..19154334, 19154479..19156839, 19157573..19157838);ID=FBan0004049;gene_id=FBgn0034976;ge ne_sym=CG4049;sym=CG4049;scaffold=AE003463;len=4890 Length = 4890 Score = 1086 bits (548), Expect = 0.0 Identities = 551/552 (99%) Strand = Plus / Plus Query: 2367 acatccacagcaacagccgcagcaacatccacagcaacagacgcagcaaccgccacagct 2426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 522 acatccacagcaacagccgcagcaacatccacagcaacagacgcagcaaccgccacagct 581 Query: 2427 gcagccgcaacaacatccacaggcacagatacagcctcccattcccgtacccatatccac 2486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 582 gcagccgcaacaacatccacaggcacagatacagcctcccattcccgtacccatatccac 641 Query: 2487 acccatggaagggactatggaagttcccgttaagatgccagaatactgccccgagacaag 2546 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 642 acccatggaagggactatggaagttcccgttaagatgccagaatactgccccgagacaag 701 Query: 2547 ccagcccgtcgagcctgaccgggtcattaatcccttggccgaggtagccaaaaacacagt 2606 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 702 ccagcccgtcgagcctgaccgggtcattaatcccttggccgaggtagccaaaaacacagt 761 Query: 2607 accttatggccacaagcgcaagaactcggcgggagaggaccaggcggcaaacaagaaact 2666 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 762 accttatggccacaagcgcaagaactcggcgggagaggaccaggcggcaaacaagaaact 821 Query: 2667 cagtatggcggccgccgaggagaagaagaacagtcacctgcggaagaacatccgcgacgt 2726 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 822 cagtatggcggccgccgaggagaagaagaacagtcacctgcggaagaacatccgcgacgt 881 Query: 2727 gatgaacgagaacaatctggacacaaccacgctggcggcccagcgagaggaatcggaacg 2786 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 882 gatgaacgagaacaatctggacacaaccacgctggcggcccagcgagaggaatcggaacg 941 Query: 2787 cttggctcgcgtttctggtcaacagaagtcaatgcgcgagatccagaagcaggtggtgca 2846 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 942 cttggctcgcgttgctggtcaacagaagtcaatgcgcgagatccagaagcaggtggtgca 1001 Query: 2847 caagcagatcttccgcatcctgcagctggacgaaagcgaaggcatcgagagctgtgccgt 2906 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1002 caagcagatcttccgcatcctgcagctggacgaaagcgaaggcatcgagagctgtgccgt 1061 Query: 2907 ggccaatcccgt 2918 |||||||||||| Sbjct: 1062 ggccaatcccgt 1073 Score = 521 bits (263), Expect = e-146 Identities = 266/267 (99%) Strand = Plus / Plus Query: 1109 tatatacaaacgtacatgttgaaaacagcgagaaaataaatcgagaataacattttaaat 1168 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tatatacaaacgtacatgttgaaaacagcgagaaaataaatcgagaataacattttaaat 60 Query: 1169 taatataataacaatcggaaggacttggtcctcgcaatcacagtggcgcacgcgataagc 1228 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 taatataataacaatcggaaggacttggtcctcgcaatcacagtggcgcacgcgataagc 120 Query: 1229 caagtatctcaagaacgttcaccaattaagagaacctcccaattgtgcacatagaaaaat 1288 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 121 caagtatctcaagaacgttcaccaattaagagaacctcccaatcgtgcacatagaaaaat 180 Query: 1289 atccatatgtataaaataacaataattaagaacctgcgttgttaattcttttatctgaaa 1348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 atccatatgtataaaataacaataattaagaacctgcgttgttaattcttttatctgaaa 240 Query: 1349 accccgttcgccggctgcatgtaaatg 1375 ||||||||||||||||||||||||||| Sbjct: 241 accccgttcgccggctgcatgtaaatg 267 >BEST:GH04269-RA feature: mRNA loc=2R:join(19158235..19158371,19158429..19159414, 19159476..19159629, 19159686..19159932);ID=FBan0003253;gene_id=FBgn0041706;g ene_sym=BEST:GH04269;sym=CG3253;scaffold=AE003463;len=15 24 Length = 1524 Score = 965 bits (487), Expect = 0.0 Identities = 502/507 (99%) Strand = Plus / Minus Query: 4 gcgaagcacaggcgcatataggtaacgaagtattgcaggactacaaactcctcgggccca 63 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 643 gcgaagcacaggcgcatataggtaacgaagtattgcaggactacaaactcctcgggccca 584 Query: 64 gctgcaaacagggccacggacatcttgccctgccaattggcagccacctggggaagcgag 123 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 583 gctgcaaacagggccacggacatcttgccctgccaattggctgccacctggggaagcgag 524 Query: 124 ttgaggcgctccactgaagtctgggtggccaggcacaccaagctgccctccgaagagtct 183 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 523 ttgaggcgctccactgaagtctgggtggccaggcacaccaagctgccctccgaggagtct 464 Query: 184 acgtactgctcgcctagcagagcaaagtctttgatcctgtacagcagctggttgtcccag 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 463 acgtactgctcgcctagcagagcaaagtctttgatcctgtacagcagctggttgtcccag 404 Query: 244 cggccgtagctcaagtcgatgttatcgaaggccagagacgcggagttgttcgggaccacg 303 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 403 cggccgtagctcaagttgatgttatcgaaggccagagacgcggagttgttcgggaccacg 344 Query: 304 aagccgtccatgttgttaagcggctggagcagcgcataggcgatgtccgaatgctaggga 363 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 343 aagccgtccatgttgttaagcggctggagcagcgcataggcgatatccgaatgctaggga 284 Query: 364 cactctacggccacgggactttggggagtgggcgggcacctctgcgcaccatctcctgcc 423 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 283 cactctacggccacgggactttggggagtgggcggacacctctgcgcaccatctcctgcc 224 Query: 424 gggggatacaccttcaggagccagaagatgttgaccgagagaaaggccagcactattttc 483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 223 gggggatacaccttcaggagccagaagatgttgaccgagagaaaggccagcactattttc 164 Query: 484 agggaactccagtttgatatgtggcac 510 ||||||||||||||||||||||||||| Sbjct: 163 agggaactccagtttgatatgtggcac 137 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 68,164 Number of Sequences: 18737 Number of extensions: 68164 Number of successful extensions: 2163 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2139 Number of HSP's gapped (non-prelim): 16 length of query: 2918 length of database: 41,270,998 effective HSP length: 19 effective length of query: 2899 effective length of database: 40,914,995 effective search space: 118612570505 effective search space used: 118612570505 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BT010079|BT010079 Drosophila melanogaster LD08455 full insert cDNA. (2209 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32819-RA feature: mRNA loc=X:complement(21290192..21290729,212... 3703 0.0 CG32820-RA feature: mRNA loc=X:complement(21284100..21284637,212... 3695 0.0 CG17450-RB feature: mRNA loc=X:complement(21278018..21278555,212... 3548 0.0 CG32819-RB feature: mRNA loc=X:complement(21290192..21290729,212... 2932 0.0 CG32820-RB feature: mRNA loc=X:complement(21284100..21284637,212... 2924 0.0 CG17450-RA feature: mRNA loc=X:complement(21278018..21278555,212... 2908 0.0 >CG32819-RA feature: mRNA loc=X:complement(21290192..21290729,21290890..21291477, 21291601..21291953, 21292626..21293014);ID=FBan0032819;gene_id=FBgn0052819;ge ne_sym=CG32819;sym=CG32819;scaffold=AE003122;len=1868 Length = 1868 Score = 3703 bits (1868), Expect = 0.0 Identities = 1868/1868 (100%) Strand = Plus / Plus Query: 1 cagacccaaagtaaagggatctccgaggaagagaagtggtaatatatcgagtccgtcgac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 cagacccaaagtaaagggatctccgaggaagagaagtggtaatatatcgagtccgtcgac 60 Query: 61 aaatgctctgctgggccaacgaggatcactatctgagccaacgctacccgaatccgcagc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 aaatgctctgctgggccaacgaggatcactatctgagccaacgctacccgaatccgcagc 120 Query: 121 aaaaggcgccagaaacgcttaagaacctgctgttgcgatccagtgtaccgatagtgggtg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aaaaggcgccagaaacgcttaagaacctgctgttgcgatccagtgtaccgatagtgggtg 180 Query: 181 ctccgaatcccgagaaggactcgcatttcgccggcaccatggcaccgctcaagggtcagg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 ctccgaatcccgagaaggactcgcatttcgccggcaccatggcaccgctcaagggtcagg 240 Query: 241 aggtgcttaagttccacaagcactcctacctcgagaaccgcatcttcgatcaccgcctgg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 aggtgcttaagttccacaagcactcctacctcgagaaccgcatcttcgatcaccgcctgg 300 Query: 301 tcaaggacaacctgctggacaagtggcccaccgctgacatgaacgagtacaacgagcgca 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 tcaaggacaacctgctggacaagtggcccaccgctgacatgaacgagtacaacgagcgca 360 Query: 361 aggaccaccgcaacctcatggagtcctatccatggagccaggcgggcgctccgccctgca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 aggaccaccgcaacctcatggagtcctatccatggagccaggcgggcgctccgccctgca 420 Query: 421 tggagcccgtcatggggccttcgatcccgccgagagttggcgccgcctacgagacgccca 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 tggagcccgtcatggggccttcgatcccgccgagagttggcgccgcctacgagacgccca 480 Query: 481 cgaagcacccgtggcgccctgctatggcctatgagctaatccaggtgaagcatatgcccg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 cgaagcacccgtggcgccctgctatggcctatgagctaatccaggtgaagcatatgcccg 540 Query: 541 agcagccggtgaccaaccagctgaccaagcagtgcttcctgcccaagggcatgaagacgg 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 agcagccggtgaccaaccagctgaccaagcagtgcttcctgcccaagggcatgaagacgg 600 Query: 601 acggcatgatattccccaacttggtcaccgggttcgatcgcaatccacagcacgccgccc 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 601 acggcatgatattccccaacttggtcaccgggttcgatcgcaatccacagcacgccgccc 660 Query: 661 gggctgccctctacacgcggtacaccagcaacgagtggtacaacaacaacatgaccaagt 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 661 gggctgccctctacacgcggtacaccagcaacgagtggtacaacaacaacatgaccaagt 720 Query: 721 actccgagtcgaacatgaatcgcaacctctcggagcgcatgcggaatgacgcagtgcgtc 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 721 actccgagtcgaacatgaatcgcaacctctcggagcgcatgcggaatgacgcagtgcgtc 780 Query: 781 tgatgcgggagacggacgagaaggccacctcgggccagagggacgccggccgaaggctgg 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 781 tgatgcgggagacggacgagaaggccacctcgggccagagggacgccggccgaaggctgg 840 Query: 841 gcgagcgcatcaccgacctgaccttctggcgcaacgagctgaacgcggagctggagaagc 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 841 gcgagcgcatcaccgacctgaccttctggcgcaacgagctgaacgcggagctggagaagc 900 Query: 901 tgatcgccgagatgtcggacatcaacgagctgcagcggcagtgcggcaaggcacttctcg 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 901 tgatcgccgagatgtcggacatcaacgagctgcagcggcagtgcggcaaggcacttctcg 960 Query: 961 acctggagataccactgcacatcgcccaggagtgcctctttcaccgagagtcgcgccagg 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 961 acctggagataccactgcacatcgcccaggagtgcctctttcaccgagagtcgcgccagg 1020 Query: 1021 gcacggagaaggtgcatgacatcgtggagaaggccctcctcgttgagatcaacaacttga 1080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1021 gcacggagaaggtgcatgacatcgtggagaaggccctcctcgttgagatcaacaacttga 1080 Query: 1081 ggaactcccgtgaccggctaggcggcctgcacgagaagatctcgaagcaggccctcgact 1140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1081 ggaactcccgtgaccggctaggcggcctgcacgagaagatctcgaagcaggccctcgact 1140 Query: 1141 gccgcggcgcccagcatctcctcgaggacgatgtgtcgcacaaggagtcctcgctcggca 1200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1141 gccgcggcgcccagcatctcctcgaggacgatgtgtcgcacaaggagtcctcgctcggca 1200 Query: 1201 tcgactccatgtgccaccagctgaacaaccacagccgcggcatcacctactacggcggca 1260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1201 tcgactccatgtgccaccagctgaacaaccacagccgcggcatcacctactacggcggca 1260 Query: 1261 tcgagaagttcgatccctcggtcagcacccaggagtcctgggcgcaggccagcagcgagc 1320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1261 tcgagaagttcgatccctcggtcagcacccaggagtcctgggcgcaggccagcagcgagc 1320 Query: 1321 acgtccgccgttcccaggcggagcgcgcgaagctttcccagctgcggagcgatgcccaga 1380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1321 acgtccgccgttcccaggcggagcgcgcgaagctttcccagctgcggagcgatgcccaga 1380 Query: 1381 gtgtggtcaactcggtggccaccaccgtgtgggacttctggagcaacacgaacaacgcct 1440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1381 gtgtggtcaactcggtggccaccaccgtgtgggacttctggagcaacacgaacaacgcct 1440 Query: 1441 tcgatcgccgctcgcaggagatggccgaggcgaagaaccgggtgcagctgcaccttcaga 1500 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1441 tcgatcgccgctcgcaggagatggccgaggcgaagaaccgggtgcagctgcaccttcaga 1500 Query: 1501 aggtccaacaggagctgttcgacatggagaagcatctcttcctcctgcagaaggccatcc 1560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1501 aggtccaacaggagctgttcgacatggagaagcatctcttcctcctgcagaaggccatcc 1560 Query: 1561 aggacaagtccgggccgttgaaagtggcccagacgcggctggaggcccgctcccaccgcg 1620 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1561 aggacaagtccgggccgttgaaagtggcccagacgcggctggaggcccgctcccaccgcg 1620 Query: 1621 agggcgtcgagctgtgcaaggaccacgcccaggaccgcctcgtccaggaggtgcaggaca 1680 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1621 agggcgtcgagctgtgcaaggaccacgcccaggaccgcctcgtccaggaggtgcaggaca 1680 Query: 1681 tccagggtgccgtggagacgctgcaccacaagctgatggaggcggaggccacccatcagg 1740 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1681 tccagggtgccgtggagacgctgcaccacaagctgatggaggcggaggccacccatcagg 1740 Query: 1741 gcctactaaagacgcgctgcaccctggaggtggatctgcgcaacaaagtcaatgccctgt 1800 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1741 gcctactaaagacgcgctgcaccctggaggtggatctgcgcaacaaagtcaatgccctgt 1800 Query: 1801 tcatcgaccgagagaagtgcatgagtctccggcgctccttcccggtcagcaatctgatca 1860 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1801 tcatcgaccgagagaagtgcatgagtctccggcgctccttcccggtcagcaatctgatca 1860 Query: 1861 agtactga 1868 |||||||| Sbjct: 1861 agtactga 1868 >CG32820-RA feature: mRNA loc=X:complement(21284100..21284637,21284798..21285385, 21285509..21285861, 21286534..21286922);ID=FBan0032820;gene_id=FBgn0052820;ge ne_sym=CG32820;sym=CG32820;scaffold=AE003122;len=1868 Length = 1868 Score = 3695 bits (1864), Expect = 0.0 Identities = 1867/1868 (99%) Strand = Plus / Plus Query: 1 cagacccaaagtaaagggatctccgaggaagagaagtggtaatatatcgagtccgtcgac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 cagacccaaagtaaagggatctccgaggaagagaagtggtaatatatcgagtccgtcgac 60 Query: 61 aaatgctctgctgggccaacgaggatcactatctgagccaacgctacccgaatccgcagc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 aaatgctctgctgggccaacgaggatcactatctgagccaacgctacccgaatccgcagc 120 Query: 121 aaaaggcgccagaaacgcttaagaacctgctgttgcgatccagtgtaccgatagtgggtg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aaaaggcgccagaaacgcttaagaacctgctgttgcgatccagtgtaccgatagtgggtg 180 Query: 181 ctccgaatcccgagaaggactcgcatttcgccggcaccatggcaccgctcaagggtcagg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 ctccgaatcccgagaaggactcgcatttcgccggcaccatggcaccgctcaagggtcagg 240 Query: 241 aggtgcttaagttccacaagcactcctacctcgagaaccgcatcttcgatcaccgcctgg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 aggtgcttaagttccacaagcactcctacctcgagaaccgcatcttcgatcaccgcctgg 300 Query: 301 tcaaggacaacctgctggacaagtggcccaccgctgacatgaacgagtacaacgagcgca 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 tcaaggacaacctgctggacaagtggcccaccgctgacatgaacgagtacaacgagcgca 360 Query: 361 aggaccaccgcaacctcatggagtcctatccatggagccaggcgggcgctccgccctgca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 aggaccaccgcaacctcatggagtcctatccatggagccaggcgggcgctccgccctgca 420 Query: 421 tggagcccgtcatggggccttcgatcccgccgagagttggcgccgcctacgagacgccca 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 tggagcccgtcatggggccttcgatcccgccgagagttggcgccgcctacgagacgccca 480 Query: 481 cgaagcacccgtggcgccctgctatggcctatgagctaatccaggtgaagcatatgcccg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 cgaagcacccgtggcgccctgctatggcctatgagctaatccaggtgaagcatatgcccg 540 Query: 541 agcagccggtgaccaaccagctgaccaagcagtgcttcctgcccaagggcatgaagacgg 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 agcagccggtgaccaaccagctgaccaagcagtgcttcctgcccaagggcatgaagacgg 600 Query: 601 acggcatgatattccccaacttggtcaccgggttcgatcgcaatccacagcacgccgccc 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 601 acggcatgatattccccaacttggtcaccgggttcgatcgcaatccacagcacgccgccc 660 Query: 661 gggctgccctctacacgcggtacaccagcaacgagtggtacaacaacaacatgaccaagt 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 661 gggctgccctctacacgcggtacaccagcaacgagtggtacaacaacaacatgaccaagt 720 Query: 721 actccgagtcgaacatgaatcgcaacctctcggagcgcatgcggaatgacgcagtgcgtc 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 721 actccgagtcgaacatgaatcgcaacctctcggagcgcatgcggaatgacgcagtgcgtc 780 Query: 781 tgatgcgggagacggacgagaaggccacctcgggccagagggacgccggccgaaggctgg 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 781 tgatgcgggagacggacgagaaggccacctcgggccagagggacgccggccgaaggctgg 840 Query: 841 gcgagcgcatcaccgacctgaccttctggcgcaacgagctgaacgcggagctggagaagc 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 841 gcgagcgcatcaccgacctgaccttctggcgcaacgagctgaacgcggagctggagaagc 900 Query: 901 tgatcgccgagatgtcggacatcaacgagctgcagcggcagtgcggcaaggcacttctcg 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 901 tgatcgccgagatgtcggacatcaacgagctgcagcggcagtgcggcaaggcacttctcg 960 Query: 961 acctggagataccactgcacatcgcccaggagtgcctctttcaccgagagtcgcgccagg 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 961 acctggagataccactgcacatcgcccaggagtgcctctttcaccgagagtcgcgccagg 1020 Query: 1021 gcacggagaaggtgcatgacatcgtggagaaggccctcctcgttgagatcaacaacttga 1080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1021 gcacggagaaggtgcatgacatcgtggagaaggccctcctcgttgagatcaacaacttga 1080 Query: 1081 ggaactcccgtgaccggctaggcggcctgcacgagaagatctcgaagcaggccctcgact 1140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1081 ggaactcccgtgaccggctaggcggcctgcacgagaagatctcgaagcaggccctcgact 1140 Query: 1141 gccgcggcgcccagcatctcctcgaggacgatgtgtcgcacaaggagtcctcgctcggca 1200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1141 gccgcggcgcccagcatctcctcgaggacgatgtgtcgcacaaggagtcctcgctcggca 1200 Query: 1201 tcgactccatgtgccaccagctgaacaaccacagccgcggcatcacctactacggcggca 1260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1201 tcgactccatgtgccaccagctgaacaaccacagccgcggcatcacctactacggcggca 1260 Query: 1261 tcgagaagttcgatccctcggtcagcacccaggagtcctgggcgcaggccagcagcgagc 1320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1261 tcgagaagttcgatccctcggtcagcacccaggagtcctgggcgcaggccagcagcgagc 1320 Query: 1321 acgtccgccgttcccaggcggagcgcgcgaagctttcccagctgcggagcgatgcccaga 1380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1321 acgtccgccgttcccaggcggagcgcgcgaagctttcccagctgcggagcgatgcccaga 1380 Query: 1381 gtgtggtcaactcggtggccaccaccgtgtgggacttctggagcaacacgaacaacgcct 1440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1381 gtgtggtcaactcggtggccaccaccgtgtgggacttctggagcaacacgaacaacgcct 1440 Query: 1441 tcgatcgccgctcgcaggagatggccgaggcgaagaaccgggtgcagctgcaccttcaga 1500 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1441 tcgatcgccgctcgcaggagatggccgaggcgaagaaccgggtgcagctgcaccttcaga 1500 Query: 1501 aggtccaacaggagctgttcgacatggagaagcatctcttcctcctgcagaaggccatcc 1560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1501 aggtccaacaggagctgttcgacatggagaagcatctcttcctcctgcagaaggccatcc 1560 Query: 1561 aggacaagtccgggccgttgaaagtggcccagacgcggctggaggcccgctcccaccgcg 1620 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1561 aggacaagtccgggccgttgaaagtggcccagacgcggctggaggcccgctcccaccgcg 1620 Query: 1621 agggcgtcgagctgtgcaaggaccacgcccaggaccgcctcgtccaggaggtgcaggaca 1680 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1621 agggcgtcgagctgtgcaaggaccacgcccaggaccgcctcgtccaggaggtgcaggaca 1680 Query: 1681 tccagggtgccgtggagacgctgcaccacaagctgatggaggcggaggccacccatcagg 1740 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 1681 tccagggtgccgtggagactctgcaccacaagctgatggaggcggaggccacccatcagg 1740 Query: 1741 gcctactaaagacgcgctgcaccctggaggtggatctgcgcaacaaagtcaatgccctgt 1800 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1741 gcctactaaagacgcgctgcaccctggaggtggatctgcgcaacaaagtcaatgccctgt 1800 Query: 1801 tcatcgaccgagagaagtgcatgagtctccggcgctccttcccggtcagcaatctgatca 1860 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1801 tcatcgaccgagagaagtgcatgagtctccggcgctccttcccggtcagcaatctgatca 1860 Query: 1861 agtactga 1868 |||||||| Sbjct: 1861 agtactga 1868 >CG17450-RB feature: mRNA loc=X:complement(21278018..21278555,21278713..21279300, 21279424..21279776, 21280442..21280768);ID=FBan0017450;gene_id=FBgn0040028;ge ne_sym=CG17450;sym=CG17450;scaffold=AE003122;len=1806 Length = 1806 Score = 3548 bits (1790), Expect = 0.0 Identities = 1802/1806 (99%) Strand = Plus / Plus Query: 63 atgctctgctgggccaacgaggatcactatctgagccaacgctacccgaatccgcagcaa 122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atgctctgctgggccaacgaggatcactatctgagccaacgctacccgaatccgcagcaa 60 Query: 123 aaggcgccagaaacgcttaagaacctgctgttgcgatccagtgtaccgatagtgggtgct 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 61 aaggcgccagaaacgcttaagaacctgctgttgcgatccagtgtaccgatagtgagtgct 120 Query: 183 ccgaatcccgagaaggactcgcatttcgccggcaccatggcaccgctcaagggtcaggag 242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 ccgaatcccgagaaggactcgcatttcgccggcaccatggcaccgctcaagggtcaggag 180 Query: 243 gtgcttaagttccacaagcactcctacctcgagaaccgcatcttcgatcaccgcctggtc 302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 gtgcttaagttccacaagcactcctacctcgagaaccgcatcttcgatcaccgcctggtc 240 Query: 303 aaggacaacctgctggacaagtggcccaccgctgacatgaacgagtacaacgagcgcaag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 aaggacaacctgctggacaagtggcccaccgctgacatgaacgagtacaacgagcgcaag 300 Query: 363 gaccaccgcaacctcatggagtcctatccatggagccaggcgggcgctccgccctgcatg 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 gaccaccgcaacctcatggagtcctatccatggagccaggcgggcgctccgccctgcatg 360 Query: 423 gagcccgtcatggggccttcgatcccgccgagagttggcgccgcctacgagacgcccacg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 gagcccgtcatggggccttcgatcccgccgagagttggcgccgcctacgagacgcccacg 420 Query: 483 aagcacccgtggcgccctgctatggcctatgagctaatccaggtgaagcatatgcccgag 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 aagcacccgtggcgccctgctatggcctatgagctaatccaggtgaagcatatgcccgag 480 Query: 543 cagccggtgaccaaccagctgaccaagcagtgcttcctgcccaagggcatgaagacggac 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 cagccggtgaccaaccagctgaccaagcagtgcttcctgcccaagggcatgaagacggac 540 Query: 603 ggcatgatattccccaacttggtcaccgggttcgatcgcaatccacagcacgccgcccgg 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 ggcatgatattccccaacttggtcaccgggttcgatcgcaatccacagcacgccgcccgg 600 Query: 663 gctgccctctacacgcggtacaccagcaacgagtggtacaacaacaacatgaccaagtac 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 601 gctgccctctacacgcggtacaccagcaacgagtggtacaacaacaacatgaccaagtac 660 Query: 723 tccgagtcgaacatgaatcgcaacctctcggagcgcatgcggaatgacgcagtgcgtctg 782 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 661 tccgagtcgaacatgaatcgcaacctctcggagcgcatgcggaatgacgcagtgcgtctg 720 Query: 783 atgcgggagacggacgagaaggccacctcgggccagagggacgccggccgaaggctgggc 842 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 721 atgcgggagacggacgagaaggccacctcgggccagagggacgccggccgaaggctgggc 780 Query: 843 gagcgcatcaccgacctgaccttctggcgcaacgagctgaacgcggagctggagaagctg 902 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 781 gagcgcatcaccgacctgaccttctggcgcaacgagctgaacgcggagctggagaagctg 840 Query: 903 atcgccgagatgtcggacatcaacgagctgcagcggcagtgcggcaaggcacttctcgac 962 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 841 atcgccgagatgtcggacatcaacgagctgcagcggcagtgcggcaaggcacttctcgac 900 Query: 963 ctggagataccactgcacatcgcccaggagtgcctctttcaccgagagtcgcgccagggc 1022 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 901 ctggagataccactgcacatcgcccaggagtgcctctttcaccaagagtcgcgccagggc 960 Query: 1023 acggagaaggtgcatgacatcgtggagaaggccctcctcgttgagatcaacaacttgagg 1082 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 961 acggagaaggtgcatgacatcgtggagaaggccctcctcgttgagatcaacaacttgagg 1020 Query: 1083 aactcccgtgaccggctaggcggcctgcacgagaagatctcgaagcaggccctcgactgc 1142 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1021 aactcccgtgaccggctaggcggcctgcacgagaagatctcgaagcaggccctcgactgc 1080 Query: 1143 cgcggcgcccagcatctcctcgaggacgatgtgtcgcacaaggagtcctcgctcggcatc 1202 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1081 cgcggcgcccagcatctcctcgaggacgatgtgtcgcacaaggagtcctcgctcggcatc 1140 Query: 1203 gactccatgtgccaccagctgaacaaccacagccgcggcatcacctactacggcggcatc 1262 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1141 gactccatgtgccaccagctgaacaaccacagccgcggcatcacctactacggcggcatc 1200 Query: 1263 gagaagttcgatccctcggtcagcacccaggagtcctgggcgcaggccagcagcgagcac 1322 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1201 gagaagttcgatccctcggtcagcacccaggagtcctgggcgcaggccagcagcgagcac 1260 Query: 1323 gtccgccgttcccaggcggagcgcgcgaagctttcccagctgcggagcgatgcccagagt 1382 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1261 gtccgccgttcccaggcggagcgcgcgaagctttcccagctgcggagcgatgcccagagt 1320 Query: 1383 gtggtcaactcggtggccaccaccgtgtgggacttctggagcaacacgaacaacgccttc 1442 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1321 gtggtcaactcggtggccaccaccgtgtgggacttctggagcaacacgaacaacgccttc 1380 Query: 1443 gatcgccgctcgcaggagatggccgaggcgaagaaccgggtgcagctgcaccttcagaag 1502 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1381 gatcgccgctcgcaggagatggccgaggcgaagaaccgggtgcagctgcaccttcagaag 1440 Query: 1503 gtccaacaggagctgttcgacatggagaagcatctcttcctcctgcagaaggccatccag 1562 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1441 gtccaacaggagctgttcgacatggagaagcatctcttcctcctgcagaaggccatccag 1500 Query: 1563 gacaagtccgggccgttgaaagtggcccagacgcggctggaggcccgctcccaccgcgag 1622 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1501 gacaagtccgggccgttgaaagtggcccagacgcggctggaggcccgctcccaccgcgag 1560 Query: 1623 ggcgtcgagctgtgcaaggaccacgcccaggaccgcctcgtccaggaggtgcaggacatc 1682 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1561 ggcgtcgagctgtgcaaggaccacgcccaggaccgccttgtccaggaggtgcaggacatc 1620 Query: 1683 cagggtgccgtggagacgctgcaccacaagctgatggaggcggaggccacccatcagggc 1742 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1621 cagggtgcagtggagacgctgcaccacaagctgatggaggcggaggccacccatcagggc 1680 Query: 1743 ctactaaagacgcgctgcaccctggaggtggatctgcgcaacaaagtcaatgccctgttc 1802 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1681 ctactaaagacgcgctgcaccctggaggtggatctgcgcaacaaagtcaatgccctgttc 1740 Query: 1803 atcgaccgagagaagtgcatgagtctccggcgctccttcccggtcagcaatctgatcaag 1862 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1741 atcgaccgagagaagtgcatgagtctccggcgctccttcccggtcagcaatctgatcaag 1800 Query: 1863 tactga 1868 |||||| Sbjct: 1801 tactga 1806 >CG32819-RB feature: mRNA loc=X:complement(21290192..21290729,21290890..21291477, 21291601..21292181);ID=FBan0032819;gene_id=FBgn0052819;ge ne_sym=CG32819;sym=CG32819;scaffold=AE003122;len=1707 Length = 1707 Score = 2932 bits (1479), Expect = 0.0 Identities = 1479/1479 (100%) Strand = Plus / Plus Query: 390 ccatggagccaggcgggcgctccgccctgcatggagcccgtcatggggccttcgatcccg 449 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 229 ccatggagccaggcgggcgctccgccctgcatggagcccgtcatggggccttcgatcccg 288 Query: 450 ccgagagttggcgccgcctacgagacgcccacgaagcacccgtggcgccctgctatggcc 509 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 289 ccgagagttggcgccgcctacgagacgcccacgaagcacccgtggcgccctgctatggcc 348 Query: 510 tatgagctaatccaggtgaagcatatgcccgagcagccggtgaccaaccagctgaccaag 569 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 349 tatgagctaatccaggtgaagcatatgcccgagcagccggtgaccaaccagctgaccaag 408 Query: 570 cagtgcttcctgcccaagggcatgaagacggacggcatgatattccccaacttggtcacc 629 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 409 cagtgcttcctgcccaagggcatgaagacggacggcatgatattccccaacttggtcacc 468 Query: 630 gggttcgatcgcaatccacagcacgccgcccgggctgccctctacacgcggtacaccagc 689 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 469 gggttcgatcgcaatccacagcacgccgcccgggctgccctctacacgcggtacaccagc 528 Query: 690 aacgagtggtacaacaacaacatgaccaagtactccgagtcgaacatgaatcgcaacctc 749 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 529 aacgagtggtacaacaacaacatgaccaagtactccgagtcgaacatgaatcgcaacctc 588 Query: 750 tcggagcgcatgcggaatgacgcagtgcgtctgatgcgggagacggacgagaaggccacc 809 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 589 tcggagcgcatgcggaatgacgcagtgcgtctgatgcgggagacggacgagaaggccacc 648 Query: 810 tcgggccagagggacgccggccgaaggctgggcgagcgcatcaccgacctgaccttctgg 869 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 649 tcgggccagagggacgccggccgaaggctgggcgagcgcatcaccgacctgaccttctgg 708 Query: 870 cgcaacgagctgaacgcggagctggagaagctgatcgccgagatgtcggacatcaacgag 929 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 709 cgcaacgagctgaacgcggagctggagaagctgatcgccgagatgtcggacatcaacgag 768 Query: 930 ctgcagcggcagtgcggcaaggcacttctcgacctggagataccactgcacatcgcccag 989 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 769 ctgcagcggcagtgcggcaaggcacttctcgacctggagataccactgcacatcgcccag 828 Query: 990 gagtgcctctttcaccgagagtcgcgccagggcacggagaaggtgcatgacatcgtggag 1049 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 829 gagtgcctctttcaccgagagtcgcgccagggcacggagaaggtgcatgacatcgtggag 888 Query: 1050 aaggccctcctcgttgagatcaacaacttgaggaactcccgtgaccggctaggcggcctg 1109 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 889 aaggccctcctcgttgagatcaacaacttgaggaactcccgtgaccggctaggcggcctg 948 Query: 1110 cacgagaagatctcgaagcaggccctcgactgccgcggcgcccagcatctcctcgaggac 1169 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 949 cacgagaagatctcgaagcaggccctcgactgccgcggcgcccagcatctcctcgaggac 1008 Query: 1170 gatgtgtcgcacaaggagtcctcgctcggcatcgactccatgtgccaccagctgaacaac 1229 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1009 gatgtgtcgcacaaggagtcctcgctcggcatcgactccatgtgccaccagctgaacaac 1068 Query: 1230 cacagccgcggcatcacctactacggcggcatcgagaagttcgatccctcggtcagcacc 1289 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1069 cacagccgcggcatcacctactacggcggcatcgagaagttcgatccctcggtcagcacc 1128 Query: 1290 caggagtcctgggcgcaggccagcagcgagcacgtccgccgttcccaggcggagcgcgcg 1349 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1129 caggagtcctgggcgcaggccagcagcgagcacgtccgccgttcccaggcggagcgcgcg 1188 Query: 1350 aagctttcccagctgcggagcgatgcccagagtgtggtcaactcggtggccaccaccgtg 1409 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1189 aagctttcccagctgcggagcgatgcccagagtgtggtcaactcggtggccaccaccgtg 1248 Query: 1410 tgggacttctggagcaacacgaacaacgccttcgatcgccgctcgcaggagatggccgag 1469 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1249 tgggacttctggagcaacacgaacaacgccttcgatcgccgctcgcaggagatggccgag 1308 Query: 1470 gcgaagaaccgggtgcagctgcaccttcagaaggtccaacaggagctgttcgacatggag 1529 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1309 gcgaagaaccgggtgcagctgcaccttcagaaggtccaacaggagctgttcgacatggag 1368 Query: 1530 aagcatctcttcctcctgcagaaggccatccaggacaagtccgggccgttgaaagtggcc 1589 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1369 aagcatctcttcctcctgcagaaggccatccaggacaagtccgggccgttgaaagtggcc 1428 Query: 1590 cagacgcggctggaggcccgctcccaccgcgagggcgtcgagctgtgcaaggaccacgcc 1649 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1429 cagacgcggctggaggcccgctcccaccgcgagggcgtcgagctgtgcaaggaccacgcc 1488 Query: 1650 caggaccgcctcgtccaggaggtgcaggacatccagggtgccgtggagacgctgcaccac 1709 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1489 caggaccgcctcgtccaggaggtgcaggacatccagggtgccgtggagacgctgcaccac 1548 Query: 1710 aagctgatggaggcggaggccacccatcagggcctactaaagacgcgctgcaccctggag 1769 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1549 aagctgatggaggcggaggccacccatcagggcctactaaagacgcgctgcaccctggag 1608 Query: 1770 gtggatctgcgcaacaaagtcaatgccctgttcatcgaccgagagaagtgcatgagtctc 1829 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1609 gtggatctgcgcaacaaagtcaatgccctgttcatcgaccgagagaagtgcatgagtctc 1668 Query: 1830 cggcgctccttcccggtcagcaatctgatcaagtactga 1868 ||||||||||||||||||||||||||||||||||||||| Sbjct: 1669 cggcgctccttcccggtcagcaatctgatcaagtactga 1707 >CG32820-RB feature: mRNA loc=X:complement(21284100..21284637,21284798..21285385, 21285509..21285945);ID=FBan0032820;gene_id=FBgn0052820;ge ne_sym=CG32820;sym=CG32820;scaffold=AE003122;len=1563 Length = 1563 Score = 2924 bits (1475), Expect = 0.0 Identities = 1478/1479 (99%) Strand = Plus / Plus Query: 390 ccatggagccaggcgggcgctccgccctgcatggagcccgtcatggggccttcgatcccg 449 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 85 ccatggagccaggcgggcgctccgccctgcatggagcccgtcatggggccttcgatcccg 144 Query: 450 ccgagagttggcgccgcctacgagacgcccacgaagcacccgtggcgccctgctatggcc 509 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 145 ccgagagttggcgccgcctacgagacgcccacgaagcacccgtggcgccctgctatggcc 204 Query: 510 tatgagctaatccaggtgaagcatatgcccgagcagccggtgaccaaccagctgaccaag 569 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 205 tatgagctaatccaggtgaagcatatgcccgagcagccggtgaccaaccagctgaccaag 264 Query: 570 cagtgcttcctgcccaagggcatgaagacggacggcatgatattccccaacttggtcacc 629 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 265 cagtgcttcctgcccaagggcatgaagacggacggcatgatattccccaacttggtcacc 324 Query: 630 gggttcgatcgcaatccacagcacgccgcccgggctgccctctacacgcggtacaccagc 689 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 325 gggttcgatcgcaatccacagcacgccgcccgggctgccctctacacgcggtacaccagc 384 Query: 690 aacgagtggtacaacaacaacatgaccaagtactccgagtcgaacatgaatcgcaacctc 749 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 385 aacgagtggtacaacaacaacatgaccaagtactccgagtcgaacatgaatcgcaacctc 444 Query: 750 tcggagcgcatgcggaatgacgcagtgcgtctgatgcgggagacggacgagaaggccacc 809 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 445 tcggagcgcatgcggaatgacgcagtgcgtctgatgcgggagacggacgagaaggccacc 504 Query: 810 tcgggccagagggacgccggccgaaggctgggcgagcgcatcaccgacctgaccttctgg 869 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 505 tcgggccagagggacgccggccgaaggctgggcgagcgcatcaccgacctgaccttctgg 564 Query: 870 cgcaacgagctgaacgcggagctggagaagctgatcgccgagatgtcggacatcaacgag 929 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 565 cgcaacgagctgaacgcggagctggagaagctgatcgccgagatgtcggacatcaacgag 624 Query: 930 ctgcagcggcagtgcggcaaggcacttctcgacctggagataccactgcacatcgcccag 989 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 625 ctgcagcggcagtgcggcaaggcacttctcgacctggagataccactgcacatcgcccag 684 Query: 990 gagtgcctctttcaccgagagtcgcgccagggcacggagaaggtgcatgacatcgtggag 1049 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 685 gagtgcctctttcaccgagagtcgcgccagggcacggagaaggtgcatgacatcgtggag 744 Query: 1050 aaggccctcctcgttgagatcaacaacttgaggaactcccgtgaccggctaggcggcctg 1109 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 745 aaggccctcctcgttgagatcaacaacttgaggaactcccgtgaccggctaggcggcctg 804 Query: 1110 cacgagaagatctcgaagcaggccctcgactgccgcggcgcccagcatctcctcgaggac 1169 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 805 cacgagaagatctcgaagcaggccctcgactgccgcggcgcccagcatctcctcgaggac 864 Query: 1170 gatgtgtcgcacaaggagtcctcgctcggcatcgactccatgtgccaccagctgaacaac 1229 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 865 gatgtgtcgcacaaggagtcctcgctcggcatcgactccatgtgccaccagctgaacaac 924 Query: 1230 cacagccgcggcatcacctactacggcggcatcgagaagttcgatccctcggtcagcacc 1289 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 925 cacagccgcggcatcacctactacggcggcatcgagaagttcgatccctcggtcagcacc 984 Query: 1290 caggagtcctgggcgcaggccagcagcgagcacgtccgccgttcccaggcggagcgcgcg 1349 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 985 caggagtcctgggcgcaggccagcagcgagcacgtccgccgttcccaggcggagcgcgcg 1044 Query: 1350 aagctttcccagctgcggagcgatgcccagagtgtggtcaactcggtggccaccaccgtg 1409 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1045 aagctttcccagctgcggagcgatgcccagagtgtggtcaactcggtggccaccaccgtg 1104 Query: 1410 tgggacttctggagcaacacgaacaacgccttcgatcgccgctcgcaggagatggccgag 1469 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1105 tgggacttctggagcaacacgaacaacgccttcgatcgccgctcgcaggagatggccgag 1164 Query: 1470 gcgaagaaccgggtgcagctgcaccttcagaaggtccaacaggagctgttcgacatggag 1529 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1165 gcgaagaaccgggtgcagctgcaccttcagaaggtccaacaggagctgttcgacatggag 1224 Query: 1530 aagcatctcttcctcctgcagaaggccatccaggacaagtccgggccgttgaaagtggcc 1589 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1225 aagcatctcttcctcctgcagaaggccatccaggacaagtccgggccgttgaaagtggcc 1284 Query: 1590 cagacgcggctggaggcccgctcccaccgcgagggcgtcgagctgtgcaaggaccacgcc 1649 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1285 cagacgcggctggaggcccgctcccaccgcgagggcgtcgagctgtgcaaggaccacgcc 1344 Query: 1650 caggaccgcctcgtccaggaggtgcaggacatccagggtgccgtggagacgctgcaccac 1709 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1345 caggaccgcctcgtccaggaggtgcaggacatccagggtgccgtggagactctgcaccac 1404 Query: 1710 aagctgatggaggcggaggccacccatcagggcctactaaagacgcgctgcaccctggag 1769 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1405 aagctgatggaggcggaggccacccatcagggcctactaaagacgcgctgcaccctggag 1464 Query: 1770 gtggatctgcgcaacaaagtcaatgccctgttcatcgaccgagagaagtgcatgagtctc 1829 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1465 gtggatctgcgcaacaaagtcaatgccctgttcatcgaccgagagaagtgcatgagtctc 1524 Query: 1830 cggcgctccttcccggtcagcaatctgatcaagtactga 1868 ||||||||||||||||||||||||||||||||||||||| Sbjct: 1525 cggcgctccttcccggtcagcaatctgatcaagtactga 1563 >CG17450-RA feature: mRNA loc=X:complement(21278018..21278555,21278713..21279300, 21279424..21280004);ID=FBan0017450;gene_id=FBgn0040028;ge ne_sym=CG17450;sym=CG17450;scaffold=AE003122;len=1707 Length = 1707 Score = 2908 bits (1467), Expect = 0.0 Identities = 1476/1479 (99%) Strand = Plus / Plus Query: 390 ccatggagccaggcgggcgctccgccctgcatggagcccgtcatggggccttcgatcccg 449 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 229 ccatggagccaggcgggcgctccgccctgcatggagcccgtcatggggccttcgatcccg 288 Query: 450 ccgagagttggcgccgcctacgagacgcccacgaagcacccgtggcgccctgctatggcc 509 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 289 ccgagagttggcgccgcctacgagacgcccacgaagcacccgtggcgccctgctatggcc 348 Query: 510 tatgagctaatccaggtgaagcatatgcccgagcagccggtgaccaaccagctgaccaag 569 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 349 tatgagctaatccaggtgaagcatatgcccgagcagccggtgaccaaccagctgaccaag 408 Query: 570 cagtgcttcctgcccaagggcatgaagacggacggcatgatattccccaacttggtcacc 629 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 409 cagtgcttcctgcccaagggcatgaagacggacggcatgatattccccaacttggtcacc 468 Query: 630 gggttcgatcgcaatccacagcacgccgcccgggctgccctctacacgcggtacaccagc 689 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 469 gggttcgatcgcaatccacagcacgccgcccgggctgccctctacacgcggtacaccagc 528 Query: 690 aacgagtggtacaacaacaacatgaccaagtactccgagtcgaacatgaatcgcaacctc 749 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 529 aacgagtggtacaacaacaacatgaccaagtactccgagtcgaacatgaatcgcaacctc 588 Query: 750 tcggagcgcatgcggaatgacgcagtgcgtctgatgcgggagacggacgagaaggccacc 809 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 589 tcggagcgcatgcggaatgacgcagtgcgtctgatgcgggagacggacgagaaggccacc 648 Query: 810 tcgggccagagggacgccggccgaaggctgggcgagcgcatcaccgacctgaccttctgg 869 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 649 tcgggccagagggacgccggccgaaggctgggcgagcgcatcaccgacctgaccttctgg 708 Query: 870 cgcaacgagctgaacgcggagctggagaagctgatcgccgagatgtcggacatcaacgag 929 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 709 cgcaacgagctgaacgcggagctggagaagctgatcgccgagatgtcggacatcaacgag 768 Query: 930 ctgcagcggcagtgcggcaaggcacttctcgacctggagataccactgcacatcgcccag 989 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 769 ctgcagcggcagtgcggcaaggcacttctcgacctggagataccactgcacatcgcccag 828 Query: 990 gagtgcctctttcaccgagagtcgcgccagggcacggagaaggtgcatgacatcgtggag 1049 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 829 gagtgcctctttcaccaagagtcgcgccagggcacggagaaggtgcatgacatcgtggag 888 Query: 1050 aaggccctcctcgttgagatcaacaacttgaggaactcccgtgaccggctaggcggcctg 1109 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 889 aaggccctcctcgttgagatcaacaacttgaggaactcccgtgaccggctaggcggcctg 948 Query: 1110 cacgagaagatctcgaagcaggccctcgactgccgcggcgcccagcatctcctcgaggac 1169 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 949 cacgagaagatctcgaagcaggccctcgactgccgcggcgcccagcatctcctcgaggac 1008 Query: 1170 gatgtgtcgcacaaggagtcctcgctcggcatcgactccatgtgccaccagctgaacaac 1229 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1009 gatgtgtcgcacaaggagtcctcgctcggcatcgactccatgtgccaccagctgaacaac 1068 Query: 1230 cacagccgcggcatcacctactacggcggcatcgagaagttcgatccctcggtcagcacc 1289 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1069 cacagccgcggcatcacctactacggcggcatcgagaagttcgatccctcggtcagcacc 1128 Query: 1290 caggagtcctgggcgcaggccagcagcgagcacgtccgccgttcccaggcggagcgcgcg 1349 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1129 caggagtcctgggcgcaggccagcagcgagcacgtccgccgttcccaggcggagcgcgcg 1188 Query: 1350 aagctttcccagctgcggagcgatgcccagagtgtggtcaactcggtggccaccaccgtg 1409 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1189 aagctttcccagctgcggagcgatgcccagagtgtggtcaactcggtggccaccaccgtg 1248 Query: 1410 tgggacttctggagcaacacgaacaacgccttcgatcgccgctcgcaggagatggccgag 1469 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1249 tgggacttctggagcaacacgaacaacgccttcgatcgccgctcgcaggagatggccgag 1308 Query: 1470 gcgaagaaccgggtgcagctgcaccttcagaaggtccaacaggagctgttcgacatggag 1529 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1309 gcgaagaaccgggtgcagctgcaccttcagaaggtccaacaggagctgttcgacatggag 1368 Query: 1530 aagcatctcttcctcctgcagaaggccatccaggacaagtccgggccgttgaaagtggcc 1589 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1369 aagcatctcttcctcctgcagaaggccatccaggacaagtccgggccgttgaaagtggcc 1428 Query: 1590 cagacgcggctggaggcccgctcccaccgcgagggcgtcgagctgtgcaaggaccacgcc 1649 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1429 cagacgcggctggaggcccgctcccaccgcgagggcgtcgagctgtgcaaggaccacgcc 1488 Query: 1650 caggaccgcctcgtccaggaggtgcaggacatccagggtgccgtggagacgctgcaccac 1709 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1489 caggaccgccttgtccaggaggtgcaggacatccagggtgcagtggagacgctgcaccac 1548 Query: 1710 aagctgatggaggcggaggccacccatcagggcctactaaagacgcgctgcaccctggag 1769 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1549 aagctgatggaggcggaggccacccatcagggcctactaaagacgcgctgcaccctggag 1608 Query: 1770 gtggatctgcgcaacaaagtcaatgccctgttcatcgaccgagagaagtgcatgagtctc 1829 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1609 gtggatctgcgcaacaaagtcaatgccctgttcatcgaccgagagaagtgcatgagtctc 1668 Query: 1830 cggcgctccttcccggtcagcaatctgatcaagtactga 1868 ||||||||||||||||||||||||||||||||||||||| Sbjct: 1669 cggcgctccttcccggtcagcaatctgatcaagtactga 1707 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 71,626 Number of Sequences: 18737 Number of extensions: 71626 Number of successful extensions: 1858 Number of sequences better than 1.0e-100: 6 Number of HSP's better than 0.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1846 Number of HSP's gapped (non-prelim): 12 length of query: 2209 length of database: 41,270,998 effective HSP length: 18 effective length of query: 2191 effective length of database: 40,933,732 effective search space: 89685806812 effective search space used: 89685806812 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AX094079|AX094079 Sequence 203 from Patent WO0118547. (562 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,440 Number of Sequences: 18737 Number of extensions: 11440 Number of successful extensions: 250 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 250 Number of HSP's gapped (non-prelim): 0 length of query: 562 length of database: 41,270,998 effective HSP length: 17 effective length of query: 545 effective length of database: 40,952,469 effective search space: 22319095605 effective search space used: 22319095605 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AX094194|AX094194 Sequence 318 from Patent WO0118547. (334 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6787 Number of Sequences: 18737 Number of extensions: 6787 Number of successful extensions: 460 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 460 Number of HSP's gapped (non-prelim): 0 length of query: 334 length of database: 41,270,998 effective HSP length: 16 effective length of query: 318 effective length of database: 40,971,206 effective search space: 13028843508 effective search space used: 13028843508 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA246423|DMAA46423 LD05290.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD05290 5prime, mRNA sequence. (615 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG15387-RA feature: mRNA loc=2L:complement(2218365..2218568,2218... 527 e-149 CG7085-RA feature: mRNA loc=2L:join(2219104..2219848,2221833..22... 527 e-149 >CG15387-RA feature: mRNA loc=2L:complement(2218365..2218568,2218626..2218746, 2219043..2219407);ID=FBan0015387;gene_id=FBgn0031403;gen e_sym=CG15387;sym=CG15387;scaffold=AE003584;len=690 Length = 690 Score = 527 bits (266), Expect = e-149 Identities = 278/281 (98%), Gaps = 1/281 (0%) Strand = Plus / Minus Query: 7 ggaaatcatgtcacgtcggaa-gtcgacaaaagacacaaataataggaaaaagcttattt 65 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 303 ggaaatcatgtcacgtcggaacgtcgacaaaagacacaaataataggaaaaagcttattt 244 Query: 66 cgcgcaggcactcgcatattcccagtaaatgcaaggccaatgcaaatgcaccattagtac 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 243 cgcgcaggcactcgcatattcccagtaaatgcaaggccaatgcaaatgcaccattagtac 184 Query: 126 gggccaccaaattgtaaatcaaaccgtcgagttcccagcgcaaaaacgccgagcaaagca 185 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 183 gggccaccaaattgtaaatcaaaccgtcgagttcccagcgcaaaaacgccgagcaaagca 124 Query: 186 gcaacaacgaaacgcattntagggcctgcatttttgcgatagtgtgaaaagtgcgtgtgt 245 |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct: 123 gcaacaacgaaacgcagtttagggcctgcatttttgcgatagtgtgaaaagtgcgtgtgt 64 Query: 246 gcaaaagaatacaaaataaagggggcgcaaaagagtcagtg 286 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 63 gcaaaagaatacaaaataaagggggcgcaaaagagtcagtg 23 >CG7085-RA feature: mRNA loc=2L:join(2219104..2219848,2221833..2221960, 2222024..2222142,2222205..2222380, 2222445..2223670);ID=FBan0007085;gene_id=FBgn0031402;gen e_sym=CG7085;sym=CG7085;scaffold=AE003584;len=2394 Length = 2394 Score = 527 bits (266), Expect = e-149 Identities = 278/281 (98%), Gaps = 1/281 (0%) Strand = Plus / Plus Query: 7 ggaaatcatgtcacgtcggaa-gtcgacaaaagacacaaataataggaaaaagcttattt 65 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 2 ggaaatcatgtcacgtcggaacgtcgacaaaagacacaaataataggaaaaagcttattt 61 Query: 66 cgcgcaggcactcgcatattcccagtaaatgcaaggccaatgcaaatgcaccattagtac 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 62 cgcgcaggcactcgcatattcccagtaaatgcaaggccaatgcaaatgcaccattagtac 121 Query: 126 gggccaccaaattgtaaatcaaaccgtcgagttcccagcgcaaaaacgccgagcaaagca 185 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 122 gggccaccaaattgtaaatcaaaccgtcgagttcccagcgcaaaaacgccgagcaaagca 181 Query: 186 gcaacaacgaaacgcattntagggcctgcatttttgcgatagtgtgaaaagtgcgtgtgt 245 |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct: 182 gcaacaacgaaacgcagtttagggcctgcatttttgcgatagtgtgaaaagtgcgtgtgt 241 Query: 246 gcaaaagaatacaaaataaagggggcgcaaaagagtcagtg 286 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 242 gcaaaagaatacaaaataaagggggcgcaaaagagtcagtg 282 Score = 430 bits (217), Expect = e-120 Identities = 238/241 (98%), Gaps = 3/241 (1%) Strand = Plus / Plus Query: 374 tgtgaaactcccaacgtcgagtcagcaaattgtgccacacacacaaaacgaggaaagagg 433 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 371 tgtgaaactcccaacgtcgagtcagcaaattgtgccacacacacaaaacgaggaaagagg 430 Query: 434 aagaagagcagcagcagaaaaacataggtgctccgctcgcatcccacatctccaaaactc 493 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 431 aagaagagcagcagcagaaaaacataggtgctccgctcgcatcccacatctccaaaactc 490 Query: 494 catcgatccgaacttcccgactacccaacccaactctccggaatgaatcgctccgac-ga 552 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 491 catcgatccgaacttcccgactacccaacccaactctccggaatgaatcgctccgacgga 550 Query: 553 ttggtgcgtc-ctcggtgaaa-cccgcgaaaacggtggggcggagggtgggttgaatgcc 610 |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 551 ttggtgcgtcgctcggtgaaaccccgcgaaaacggtggggcggagggtgggttgaatgcc 610 Query: 611 a 611 | Sbjct: 611 a 611 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 24,143 Number of Sequences: 18737 Number of extensions: 24143 Number of successful extensions: 462 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 456 Number of HSP's gapped (non-prelim): 3 length of query: 615 length of database: 41,270,998 effective HSP length: 17 effective length of query: 598 effective length of database: 40,952,469 effective search space: 24489576462 effective search space used: 24489576462 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA536579|DMAA36579 LD17341.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD17341 5, mRNA sequence. (586 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value aret-RD feature: mRNA loc=2L:join(12276096..12276679,12277776..1... 1072 0.0 aret-RC feature: mRNA loc=2L:join(12259807..12260218,12260462..1... 1051 0.0 aret-RB feature: mRNA loc=2L:join(12194714..12195001,12229739..1... 1051 0.0 aret-RA feature: mRNA loc=2L:join(12259807..12260218,12260462..1... 1051 0.0 >aret-RD feature: mRNA loc=2L:join(12276096..12276679,12277776..12278215, 12287439..12287620,12287685..12287982,12288059..12288265, 12293317..12293466, 12299553..12300305);ID=FBan0031762;gene_id=FBgn0000114;ge ne_sym=aret;sym=CG31762;scaffold=AE003635;len=2614 Length = 2614 Score = 1072 bits (541), Expect = 0.0 Identities = 565/569 (99%), Gaps = 3/569 (0%) Strand = Plus / Minus Query: 20 atgatacgtacaacgttggcattcgcatcatcgtttaaatcttgcaacgcgctctacacg 79 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2284 atgatacgtacaacgttggcattcgcatcatcgtttaaatcttgcaacgcgctctacacg 2225 Query: 80 ggcaactcttcattcattgactactccatatttcacaaatctcagtgttcctctactcga 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2224 ggcaactcttcattcattgactactccatatttcacaaatctcagtgttcctctactcga 2165 Query: 140 tgtgtccgtttaaccttgccgccgatggtggcctctagtagggcttcgagtccttgggct 199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2164 tgtgtccgtttaaccttgccgccgatggtggcctctagtagggcttcgagtccttgggct 2105 Query: 200 tcttcagctgcaccttgagacgcttggtgcccacctggaagccgttcatcgcctttatgg 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2104 tcttcagctgcaccttgagacgcttggtgcccacctggaagccgttcatcgcctttatgg 2045 Query: 260 ccacctgggtcgagtccggattgtcgaaggagacaaacccgaagcacttcgacaggctcg 319 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2044 ccacctgggccgagtccggattgtcgaaggagacaaacccgaagcacttcgacaggctcg 1985 Query: 320 tctgtttgtcgatgaacaccttggccgagatcacattgccgaa-ggcagcgaacgtggag 378 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct: 1984 tctgtttgtcgatgaacaccttggccgagatcacattgccgaagggcag-gaacgtggag 1926 Query: 379 gccagatccgtatcggtgaactcctgcggcagatggtagatgaaaaggttgcagccctcg 438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1925 gccagatccgtatcggtgaactcctgcggcagatggtagatgaaaaggttgcagccctcg 1866 Query: 439 ggtccttcaatctgctttcccgctgcggc-gcggctgcggcgctgagggcaacgctggcc 497 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1865 ggtccttcaatctgctttcccgctgcggcggcggctgcggcgctgagggcaacgctggcc 1806 Query: 498 agcggcgaagtggacaatgcactggcgctcccgaattgcggcagaccggcggctgttgac 557 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1805 agcggcgaagtggacaatgcactggcgctcccgaattgcggcagaccggcggctgttgac 1746 Query: 558 atatatgccgatgccattggattcggatc 586 ||||||||||||||||||||||||||||| Sbjct: 1745 atatatgccgatgccattggattcggatc 1717 >aret-RC feature: mRNA loc=2L:join(12259807..12260218,12260462..12260955, 12267708..12267790,12271385..12271433,12287439..12287620, 12287685..12287982,12288059..12288265,12289232..12289267, 12293317..12293466,12299553..12299964,12301247..12301336, 12301397..12301667);ID=FBan0031762;gene_id=FBgn0000114;ge ne_sym=aret;sym=CG31762;scaffold=AE003635;len=2684 Length = 2684 Score = 1051 bits (530), Expect = 0.0 Identities = 554/558 (99%), Gaps = 3/558 (0%) Strand = Plus / Minus Query: 31 aacgttggcattcgcatcatcgtttaaatcttgcaacgcgctctacacgggcaactcttc 90 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2323 aacgttggcattcgcatcatcgtttaaatcttgcaacgcgctctacacgggcaactcttc 2264 Query: 91 attcattgactactccatatttcacaaatctcagtgttcctctactcgatgtgtccgttt 150 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2263 attcattgactactccatatttcacaaatctcagtgttcctctactcgatgtgtccgttt 2204 Query: 151 aaccttgccgccgatggtggcctctagtagggcttcgagtccttgggcttcttcagctgc 210 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2203 aaccttgccgccgatggtggcctctagtagggcttcgagtccttgggcttcttcagctgc 2144 Query: 211 accttgagacgcttggtgcccacctggaagccgttcatcgcctttatggccacctgggtc 270 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 2143 accttgagacgcttggtgcccacctggaagccgttcatcgcctttatggccacctgggcc 2084 Query: 271 gagtccggattgtcgaaggagacaaacccgaagcacttcgacaggctcgtctgtttgtcg 330 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2083 gagtccggattgtcgaaggagacaaacccgaagcacttcgacaggctcgtctgtttgtcg 2024 Query: 331 atgaacaccttggccgagatcacattgccgaa-ggcagcgaacgtggaggccagatccgt 389 |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 2023 atgaacaccttggccgagatcacattgccgaagggcag-gaacgtggaggccagatccgt 1965 Query: 390 atcggtgaactcctgcggcagatggtagatgaaaaggttgcagccctcgggtccttcaat 449 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1964 atcggtgaactcctgcggcagatggtagatgaaaaggttgcagccctcgggtccttcaat 1905 Query: 450 ctgctttcccgctgcggc-gcggctgcggcgctgagggcaacgctggccagcggcgaagt 508 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1904 ctgctttcccgctgcggcggcggctgcggcgctgagggcaacgctggccagcggcgaagt 1845 Query: 509 ggacaatgcactggcgctcccgaattgcggcagaccggcggctgttgacatatatgccga 568 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1844 ggacaatgcactggcgctcccgaattgcggcagaccggcggctgttgacatatatgccga 1785 Query: 569 tgccattggattcggatc 586 |||||||||||||||||| Sbjct: 1784 tgccattggattcggatc 1767 >aret-RB feature: mRNA loc=2L:join(12194714..12195001,12229739..12230651, 12260462..12260955,12267708..12267790,12271385..12271433, 12287439..12287620,12287685..12287982,12288059..12288265, 12293317..12293466,12299553..12299964,12301247..12301336, 12301397..12301672);ID=FBan0031762;gene_id=FBgn0000114;ge ne_sym=aret;sym=CG31762;scaffold=AE003635;len=3442 Length = 3442 Score = 1051 bits (530), Expect = 0.0 Identities = 554/558 (99%), Gaps = 3/558 (0%) Strand = Plus / Minus Query: 31 aacgttggcattcgcatcatcgtttaaatcttgcaacgcgctctacacgggcaactcttc 90 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3076 aacgttggcattcgcatcatcgtttaaatcttgcaacgcgctctacacgggcaactcttc 3017 Query: 91 attcattgactactccatatttcacaaatctcagtgttcctctactcgatgtgtccgttt 150 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3016 attcattgactactccatatttcacaaatctcagtgttcctctactcgatgtgtccgttt 2957 Query: 151 aaccttgccgccgatggtggcctctagtagggcttcgagtccttgggcttcttcagctgc 210 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2956 aaccttgccgccgatggtggcctctagtagggcttcgagtccttgggcttcttcagctgc 2897 Query: 211 accttgagacgcttggtgcccacctggaagccgttcatcgcctttatggccacctgggtc 270 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 2896 accttgagacgcttggtgcccacctggaagccgttcatcgcctttatggccacctgggcc 2837 Query: 271 gagtccggattgtcgaaggagacaaacccgaagcacttcgacaggctcgtctgtttgtcg 330 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2836 gagtccggattgtcgaaggagacaaacccgaagcacttcgacaggctcgtctgtttgtcg 2777 Query: 331 atgaacaccttggccgagatcacattgccgaa-ggcagcgaacgtggaggccagatccgt 389 |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 2776 atgaacaccttggccgagatcacattgccgaagggcag-gaacgtggaggccagatccgt 2718 Query: 390 atcggtgaactcctgcggcagatggtagatgaaaaggttgcagccctcgggtccttcaat 449 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2717 atcggtgaactcctgcggcagatggtagatgaaaaggttgcagccctcgggtccttcaat 2658 Query: 450 ctgctttcccgctgcggc-gcggctgcggcgctgagggcaacgctggccagcggcgaagt 508 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 2657 ctgctttcccgctgcggcggcggctgcggcgctgagggcaacgctggccagcggcgaagt 2598 Query: 509 ggacaatgcactggcgctcccgaattgcggcagaccggcggctgttgacatatatgccga 568 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2597 ggacaatgcactggcgctcccgaattgcggcagaccggcggctgttgacatatatgccga 2538 Query: 569 tgccattggattcggatc 586 |||||||||||||||||| Sbjct: 2537 tgccattggattcggatc 2520 >aret-RA feature: mRNA loc=2L:join(12259807..12260218,12260462..12260955, 12267708..12267790,12271385..12271433,12287439..12287620, 12287685..12287982,12288059..12288265,12293317..12293466, 12299553..12299964,12301247..12301336, 12301397..12301667);ID=FBan0031762;gene_id=FBgn0000114;ge ne_sym=aret;sym=CG31762;scaffold=AE003635;len=2648 Length = 2648 Score = 1051 bits (530), Expect = 0.0 Identities = 554/558 (99%), Gaps = 3/558 (0%) Strand = Plus / Minus Query: 31 aacgttggcattcgcatcatcgtttaaatcttgcaacgcgctctacacgggcaactcttc 90 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2287 aacgttggcattcgcatcatcgtttaaatcttgcaacgcgctctacacgggcaactcttc 2228 Query: 91 attcattgactactccatatttcacaaatctcagtgttcctctactcgatgtgtccgttt 150 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2227 attcattgactactccatatttcacaaatctcagtgttcctctactcgatgtgtccgttt 2168 Query: 151 aaccttgccgccgatggtggcctctagtagggcttcgagtccttgggcttcttcagctgc 210 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2167 aaccttgccgccgatggtggcctctagtagggcttcgagtccttgggcttcttcagctgc 2108 Query: 211 accttgagacgcttggtgcccacctggaagccgttcatcgcctttatggccacctgggtc 270 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 2107 accttgagacgcttggtgcccacctggaagccgttcatcgcctttatggccacctgggcc 2048 Query: 271 gagtccggattgtcgaaggagacaaacccgaagcacttcgacaggctcgtctgtttgtcg 330 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2047 gagtccggattgtcgaaggagacaaacccgaagcacttcgacaggctcgtctgtttgtcg 1988 Query: 331 atgaacaccttggccgagatcacattgccgaa-ggcagcgaacgtggaggccagatccgt 389 |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct: 1987 atgaacaccttggccgagatcacattgccgaagggcag-gaacgtggaggccagatccgt 1929 Query: 390 atcggtgaactcctgcggcagatggtagatgaaaaggttgcagccctcgggtccttcaat 449 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1928 atcggtgaactcctgcggcagatggtagatgaaaaggttgcagccctcgggtccttcaat 1869 Query: 450 ctgctttcccgctgcggc-gcggctgcggcgctgagggcaacgctggccagcggcgaagt 508 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1868 ctgctttcccgctgcggcggcggctgcggcgctgagggcaacgctggccagcggcgaagt 1809 Query: 509 ggacaatgcactggcgctcccgaattgcggcagaccggcggctgttgacatatatgccga 568 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1808 ggacaatgcactggcgctcccgaattgcggcagaccggcggctgttgacatatatgccga 1749 Query: 569 tgccattggattcggatc 586 |||||||||||||||||| Sbjct: 1748 tgccattggattcggatc 1731 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,946 Number of Sequences: 18737 Number of extensions: 14946 Number of successful extensions: 402 Number of sequences better than 1.0e-100: 4 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 390 Number of HSP's gapped (non-prelim): 4 length of query: 586 length of database: 41,270,998 effective HSP length: 17 effective length of query: 569 effective length of database: 40,952,469 effective search space: 23301954861 effective search space used: 23301954861 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA539940|DM1328789 LD19244.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD19244 5 similar to BEST:LD14959: FBan0008677 GO:[] located on: 2L 39C1-39C1;: 08/13/2002, mRNA sequence. (625 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG8677-RA feature: mRNA loc=2L:join(21191080..21191530,21192180.... 801 0.0 >CG8677-RA feature: mRNA loc=2L:join(21191080..21191530,21192180..21192361, 21192422..21192871,21192936..21196166,21196374..21198084, 21198203..21199781,21199835..21199938,21200353..21200810, 21202260..21203779);ID=FBan0008677;gene_id=FBgn0026577;ge ne_sym=CG8677;sym=CG8677;scaffold=AE003669;len=9686 Length = 9686 Score = 801 bits (404), Expect = 0.0 Identities = 444/464 (95%) Strand = Plus / Plus Query: 1 ccaaaataaaatctgaagctaaagacgatccagccccagaaagcccagaaaatagaaaga 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3683 ccaaaataaaatctgaagctaaagacgatccagccccagaaagcccagaaaatagaaaga 3742 Query: 61 aacctgaggagaaacccatcaaggaagagcccaacgaggagccaaagccaaaggtgggtc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3743 aacctgaggagaaacccatcaaggaagagcccaacgaggagccaaagccaaaggtgggtc 3802 Query: 121 gtggacgtgggccgagaaagaagcgtgaggtggatactaccaatatcattgagaccaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3803 gtggacgtgggccgagaaagaagcgtgaggtggatactaccaatatcattgagaccaacg 3862 Query: 181 actcggagacacctgtgcgccaatctaggcgcattgcccagcagaagatcaaagaggaag 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3863 actcggagacacctgtgcgccaatctaggcgcattgcccagcagaagatcaaagaggaag 3922 Query: 241 ctgaaaggcgaaagcaagaggaggttgctctacgtaccatgaaacaggagcttaagnnnn 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3923 ctgaaaggcgaaagcaagaggaggttgctctacgtaccatgaaacaggagcttaagaaaa 3982 Query: 301 nnnnnnnngccgagaaggaagcagatcctactgtgctagaaccatcaggagaagaatcag 360 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3983 agaaaaaagccgagaaggaagcagatcctactgtgctagaaccatcaggagaagaatcag 4042 Query: 361 aatccgaggccagcgaggcggaggaggaggcacgtaataagaagnnnnnnnngtgtcctg 420 |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 4043 aatccgaggccagcgaggcggaggaggaggcacgtaataagaagaaaaaaaagtgtcctg 4102 Query: 421 gcaaggatggctggtcttccgattcagaagaacagccagaaagt 464 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4103 gcaaggatggctggtcttccgattcagaagaacagccagaaagt 4146 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,097 Number of Sequences: 18737 Number of extensions: 16097 Number of successful extensions: 587 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 583 Number of HSP's gapped (non-prelim): 4 length of query: 625 length of database: 41,270,998 effective HSP length: 17 effective length of query: 608 effective length of database: 40,952,469 effective search space: 24899101152 effective search space used: 24899101152 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA540996|DM1329845 LD20735.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD20735 5 similar to brat: FBan0010719 'transcription factor' located on: 2L 37C3-37C5;: 04/10/2001, mRNA sequence. (526 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value brat-RC feature: mRNA loc=2L:join(19145650..19145790,19146178..1... 456 e-128 brat-RB feature: mRNA loc=2L:join(19136658..19136838,19144168..1... 456 e-128 brat-RA feature: mRNA loc=2L:join(19111889..19112359,19123877..1... 456 e-128 >brat-RC feature: mRNA loc=2L:join(19145650..19145790, 19146178..19150655);ID=FBan0010719;gene_id=FBgn0010300;ge ne_sym=brat;sym=CG10719;scaffold=AE003661;len=4619 Length = 4619 Score = 456 bits (230), Expect = e-128 Identities = 260/275 (94%) Strand = Plus / Minus Query: 1 agtcggcaacgaacatnnnnnnngtggagggatttcttctggtatctactatatatagtt 60 |||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 3893 agtcggcaacgaacataaaaaaagtggagggatttcttctggtatctactatatatagtt 3834 Query: 61 aaaaagtgtcannnnnnnngtttgtttcggttgtttgcttgtgtttgttgaaaatacgac 120 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 3833 aaaaagtgtcattttttttgtttgtttcggttgtttgcttgtgtttgttgaaaatacgac 3774 Query: 121 ttgcacgcgagatagagatacgagggtttgaagtgagaagtgtgcaaagatatagagagg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3773 ttgcacgcgagatagagatacgagggtttgaagtgagaagtgtgcaaagatatagagagg 3714 Query: 181 cggcggcactatccgatttgaacatgaacatgaatacacataatatatatttatcataaa 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3713 cggcggcactatccgatttgaacatgaacatgaatacacataatatatatttatcataaa 3654 Query: 241 caagtacgcacaaataaaaactaagcttaacagtg 275 ||||||||||||||||||||||||||||||||||| Sbjct: 3653 caagtacgcacaaataaaaactaagcttaacagtg 3619 Score = 383 bits (193), Expect = e-105 Identities = 193/193 (100%) Strand = Plus / Minus Query: 334 tcattccaacagtgtgcgtgtgtgttattacatagcgagcaaagtctaaggctatgagag 393 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3560 tcattccaacagtgtgcgtgtgtgttattacatagcgagcaaagtctaaggctatgagag 3501 Query: 394 atgacagatcgggggagatagtagggatcttatagatttcgatttcaacttcgattgtgt 453 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3500 atgacagatcgggggagatagtagggatcttatagatttcgatttcaacttcgattgtgt 3441 Query: 454 agatttagaattagagctggagagaccgagcaagtcagactattgagaacttagcctata 513 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3440 agatttagaattagagctggagagaccgagcaagtcagactattgagaacttagcctata 3381 Query: 514 gaagtagtgagtg 526 ||||||||||||| Sbjct: 3380 gaagtagtgagtg 3368 >brat-RB feature: mRNA loc=2L:join(19136658..19136838,19144168..19144441, 19146178..19150655);ID=FBan0010719;gene_id=FBgn0010300;ge ne_sym=brat;sym=CG10719;scaffold=AE003661;len=4933 Length = 4933 Score = 456 bits (230), Expect = e-128 Identities = 260/275 (94%) Strand = Plus / Minus Query: 1 agtcggcaacgaacatnnnnnnngtggagggatttcttctggtatctactatatatagtt 60 |||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 4207 agtcggcaacgaacataaaaaaagtggagggatttcttctggtatctactatatatagtt 4148 Query: 61 aaaaagtgtcannnnnnnngtttgtttcggttgtttgcttgtgtttgttgaaaatacgac 120 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 4147 aaaaagtgtcattttttttgtttgtttcggttgtttgcttgtgtttgttgaaaatacgac 4088 Query: 121 ttgcacgcgagatagagatacgagggtttgaagtgagaagtgtgcaaagatatagagagg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4087 ttgcacgcgagatagagatacgagggtttgaagtgagaagtgtgcaaagatatagagagg 4028 Query: 181 cggcggcactatccgatttgaacatgaacatgaatacacataatatatatttatcataaa 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4027 cggcggcactatccgatttgaacatgaacatgaatacacataatatatatttatcataaa 3968 Query: 241 caagtacgcacaaataaaaactaagcttaacagtg 275 ||||||||||||||||||||||||||||||||||| Sbjct: 3967 caagtacgcacaaataaaaactaagcttaacagtg 3933 Score = 383 bits (193), Expect = e-105 Identities = 193/193 (100%) Strand = Plus / Minus Query: 334 tcattccaacagtgtgcgtgtgtgttattacatagcgagcaaagtctaaggctatgagag 393 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3874 tcattccaacagtgtgcgtgtgtgttattacatagcgagcaaagtctaaggctatgagag 3815 Query: 394 atgacagatcgggggagatagtagggatcttatagatttcgatttcaacttcgattgtgt 453 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3814 atgacagatcgggggagatagtagggatcttatagatttcgatttcaacttcgattgtgt 3755 Query: 454 agatttagaattagagctggagagaccgagcaagtcagactattgagaacttagcctata 513 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3754 agatttagaattagagctggagagaccgagcaagtcagactattgagaacttagcctata 3695 Query: 514 gaagtagtgagtg 526 ||||||||||||| Sbjct: 3694 gaagtagtgagtg 3682 >brat-RA feature: mRNA loc=2L:join(19111889..19112359,19123877..19123927, 19144168..19144441, 19146178..19150655);ID=FBan0010719;gene_id=FBgn0010300;ge ne_sym=brat;sym=CG10719;scaffold=AE003661;len=5274 Length = 5274 Score = 456 bits (230), Expect = e-128 Identities = 260/275 (94%) Strand = Plus / Minus Query: 1 agtcggcaacgaacatnnnnnnngtggagggatttcttctggtatctactatatatagtt 60 |||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 4548 agtcggcaacgaacataaaaaaagtggagggatttcttctggtatctactatatatagtt 4489 Query: 61 aaaaagtgtcannnnnnnngtttgtttcggttgtttgcttgtgtttgttgaaaatacgac 120 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 4488 aaaaagtgtcattttttttgtttgtttcggttgtttgcttgtgtttgttgaaaatacgac 4429 Query: 121 ttgcacgcgagatagagatacgagggtttgaagtgagaagtgtgcaaagatatagagagg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4428 ttgcacgcgagatagagatacgagggtttgaagtgagaagtgtgcaaagatatagagagg 4369 Query: 181 cggcggcactatccgatttgaacatgaacatgaatacacataatatatatttatcataaa 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4368 cggcggcactatccgatttgaacatgaacatgaatacacataatatatatttatcataaa 4309 Query: 241 caagtacgcacaaataaaaactaagcttaacagtg 275 ||||||||||||||||||||||||||||||||||| Sbjct: 4308 caagtacgcacaaataaaaactaagcttaacagtg 4274 Score = 383 bits (193), Expect = e-105 Identities = 193/193 (100%) Strand = Plus / Minus Query: 334 tcattccaacagtgtgcgtgtgtgttattacatagcgagcaaagtctaaggctatgagag 393 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4215 tcattccaacagtgtgcgtgtgtgttattacatagcgagcaaagtctaaggctatgagag 4156 Query: 394 atgacagatcgggggagatagtagggatcttatagatttcgatttcaacttcgattgtgt 453 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4155 atgacagatcgggggagatagtagggatcttatagatttcgatttcaacttcgattgtgt 4096 Query: 454 agatttagaattagagctggagagaccgagcaagtcagactattgagaacttagcctata 513 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4095 agatttagaattagagctggagagaccgagcaagtcagactattgagaacttagcctata 4036 Query: 514 gaagtagtgagtg 526 ||||||||||||| Sbjct: 4035 gaagtagtgagtg 4023 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,052 Number of Sequences: 18737 Number of extensions: 10052 Number of successful extensions: 343 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 331 Number of HSP's gapped (non-prelim): 9 length of query: 526 length of database: 41,270,998 effective HSP length: 17 effective length of query: 509 effective length of database: 40,952,469 effective search space: 20844806721 effective search space used: 20844806721 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA735549|AA735549 LD21494.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD21494 5prime, mRNA sequence. (758 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value neur-RC feature: mRNA loc=3R:complement(4846083..4847781,4847841... 1376 0.0 neur-RA feature: mRNA loc=3R:complement(4846083..4847781,4847841... 1376 0.0 neur-RD feature: mRNA loc=3R:complement(4846083..4847778,4847841... 1348 0.0 neur-RB feature: mRNA loc=3R:complement(4846083..4847778,4847841... 1348 0.0 >neur-RC feature: mRNA loc=3R:complement(4846083..4847781,4847841..4849582, 4864892..4865204);ID=FBan0011988;gene_id=FBgn0002932;gene _sym=neur;sym=CG11988;scaffold=AE003681;len=3754 Length = 3754 Score = 1376 bits (694), Expect = 0.0 Identities = 747/761 (98%), Gaps = 3/761 (0%) Strand = Plus / Plus Query: 1 gctttgggtctgacctcctgcaatccggccatgttgcagcccaatgatttgcccaatgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1324 gctttgggtctgacctcctgcaatccggccatgttgcagcccaatgatttgcccaatgat 1383 Query: 61 tcggatttcctgctcgatcgccccgagtactgggtggtgagcaaggatattgcagctgct 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1384 tcggatttcctgctcgatcgccccgagtactgggtggtgagcaaggatattgcagctgct 1443 Query: 121 cctcagcgcggcgatgagattgccttcttcgtggcgcccaacggtgaagtgagcatcagc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1444 cctcagcgcggcgatgagattgccttcttcgtggcgcccaacggtgaagtgagcatcagc 1503 Query: 181 aagaacaacggaccagctgtggtggtgatgcatgtggaccagtccctccagctgtgggcc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1504 aagaacaacggaccagctgtggtggtgatgcatgtggaccagtccctccagctgtgggcc 1563 Query: 241 ttcctggatgtctacggctcgacgcagtctctgaggatgttccgccagcagttacccaac 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1564 ttcctggatgtctacggctcgacgcagtctctgaggatgttccgccagcagttacccaac 1623 Query: 301 atggttgcgtatccatcgcagccgcagtcanatgtgaatgccagcagctcgtccgcctgc 360 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 1624 atggttgcgtatccatcgcagccgcaggtcaatgtgaatgccagcagctcgtccgcctgc 1683 Query: 361 aacgctgcctccacgtcccgcatgctgcccatgaccgagtcgatgagcagtctgaatgcc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1684 aacgctgcctccacgtcccgcatgctgcccatgaccgagtcgatgagcagtctgaatgcc 1743 Query: 421 ggagccactgccaagctgttgcatcatccctcgcagctgagcgtacgccagagtacgagc 480 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 1744 ggagccactgccaagctgttgcatcatccctcgcagctgagcgtagcccagagtacgagc 1803 Query: 481 actttggcctcagctggcggagtcaatggcagccgcatgatcagcatgccctccaacgga 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1804 actttggcctcagctggcggagtcaatggcagccgcatgatcagcatgccctccaacgga 1863 Query: 541 gatattctccagatccagccgaatggtggtggcaccgttctggtggtcaacctgccacct 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1864 gatattctccagatccagccgaatggtggtggcaccgttctggtggtcaacctgccacct 1923 Query: 601 gctagcagctcgcacgatataaacggccaactcgacggcaggccaac-gcagcggtaacc 659 |||||||||||||||||||||||||||||||||| | ||||||||| || |||||||| Sbjct: 1924 gctagcagctcgcacgatataaacggccaactcgcggccaggccaacggccacggtaacc 1983 Query: 660 tccagcggtgttctggccggag-ctgct-cagcggcacccttatcagcaccaccagcagc 717 |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 1984 tccagcggtgttctggccggagcctgctccagcggcacccttatcagcaccaccagcagc 2043 Query: 718 cagtacatcgagcagcccattgccaatagcacaaataatgc 758 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 2044 cagtacatcgagcagcccattgccaatagcacaaataatgc 2084 >neur-RA feature: mRNA loc=3R:complement(4846083..4847781,4847841..4849582, 4858916..4859464);ID=FBan0011988;gene_id=FBgn0002932;gene _sym=neur;sym=CG11988;scaffold=AE003681;len=3990 Length = 3990 Score = 1376 bits (694), Expect = 0.0 Identities = 747/761 (98%), Gaps = 3/761 (0%) Strand = Plus / Plus Query: 1 gctttgggtctgacctcctgcaatccggccatgttgcagcccaatgatttgcccaatgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1560 gctttgggtctgacctcctgcaatccggccatgttgcagcccaatgatttgcccaatgat 1619 Query: 61 tcggatttcctgctcgatcgccccgagtactgggtggtgagcaaggatattgcagctgct 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1620 tcggatttcctgctcgatcgccccgagtactgggtggtgagcaaggatattgcagctgct 1679 Query: 121 cctcagcgcggcgatgagattgccttcttcgtggcgcccaacggtgaagtgagcatcagc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1680 cctcagcgcggcgatgagattgccttcttcgtggcgcccaacggtgaagtgagcatcagc 1739 Query: 181 aagaacaacggaccagctgtggtggtgatgcatgtggaccagtccctccagctgtgggcc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1740 aagaacaacggaccagctgtggtggtgatgcatgtggaccagtccctccagctgtgggcc 1799 Query: 241 ttcctggatgtctacggctcgacgcagtctctgaggatgttccgccagcagttacccaac 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1800 ttcctggatgtctacggctcgacgcagtctctgaggatgttccgccagcagttacccaac 1859 Query: 301 atggttgcgtatccatcgcagccgcagtcanatgtgaatgccagcagctcgtccgcctgc 360 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 1860 atggttgcgtatccatcgcagccgcaggtcaatgtgaatgccagcagctcgtccgcctgc 1919 Query: 361 aacgctgcctccacgtcccgcatgctgcccatgaccgagtcgatgagcagtctgaatgcc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1920 aacgctgcctccacgtcccgcatgctgcccatgaccgagtcgatgagcagtctgaatgcc 1979 Query: 421 ggagccactgccaagctgttgcatcatccctcgcagctgagcgtacgccagagtacgagc 480 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 1980 ggagccactgccaagctgttgcatcatccctcgcagctgagcgtagcccagagtacgagc 2039 Query: 481 actttggcctcagctggcggagtcaatggcagccgcatgatcagcatgccctccaacgga 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2040 actttggcctcagctggcggagtcaatggcagccgcatgatcagcatgccctccaacgga 2099 Query: 541 gatattctccagatccagccgaatggtggtggcaccgttctggtggtcaacctgccacct 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2100 gatattctccagatccagccgaatggtggtggcaccgttctggtggtcaacctgccacct 2159 Query: 601 gctagcagctcgcacgatataaacggccaactcgacggcaggccaac-gcagcggtaacc 659 |||||||||||||||||||||||||||||||||| | ||||||||| || |||||||| Sbjct: 2160 gctagcagctcgcacgatataaacggccaactcgcggccaggccaacggccacggtaacc 2219 Query: 660 tccagcggtgttctggccggag-ctgct-cagcggcacccttatcagcaccaccagcagc 717 |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 2220 tccagcggtgttctggccggagcctgctccagcggcacccttatcagcaccaccagcagc 2279 Query: 718 cagtacatcgagcagcccattgccaatagcacaaataatgc 758 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 2280 cagtacatcgagcagcccattgccaatagcacaaataatgc 2320 >neur-RD feature: mRNA loc=3R:complement(4846083..4847778,4847841..4849582, 4864892..4865204);ID=FBan0011988;gene_id=FBgn0002932;gene _sym=neur;sym=CG11988;scaffold=AE003681;len=3751 Length = 3751 Score = 1348 bits (680), Expect = 0.0 Identities = 744/761 (97%), Gaps = 6/761 (0%) Strand = Plus / Plus Query: 1 gctttgggtctgacctcctgcaatccggccatgttgcagcccaatgatttgcccaatgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1324 gctttgggtctgacctcctgcaatccggccatgttgcagcccaatgatttgcccaatgat 1383 Query: 61 tcggatttcctgctcgatcgccccgagtactgggtggtgagcaaggatattgcagctgct 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1384 tcggatttcctgctcgatcgccccgagtactgggtggtgagcaaggatattgcagctgct 1443 Query: 121 cctcagcgcggcgatgagattgccttcttcgtggcgcccaacggtgaagtgagcatcagc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1444 cctcagcgcggcgatgagattgccttcttcgtggcgcccaacggtgaagtgagcatcagc 1503 Query: 181 aagaacaacggaccagctgtggtggtgatgcatgtggaccagtccctccagctgtgggcc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1504 aagaacaacggaccagctgtggtggtgatgcatgtggaccagtccctccagctgtgggcc 1563 Query: 241 ttcctggatgtctacggctcgacgcagtctctgaggatgttccgccagcagttacccaac 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1564 ttcctggatgtctacggctcgacgcagtctctgaggatgttccgccagcagttacccaac 1623 Query: 301 atggttgcgtatccatcgcagccgcagtcanatgtgaatgccagcagctcgtccgcctgc 360 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 1624 atggttgcgtatccatcgcagccgcaggtcaatgtgaatgccagcagctcgtccgcctgc 1683 Query: 361 aacgctgcctccacgtcccgcatgctgcccatgaccgagtcgatgagcagtctgaatgcc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1684 aacgctgcctccacgtcccgcatgctgcccatgaccgagtcgatgagcagtctgaatgcc 1743 Query: 421 ggagccactgccaagctgttgcatcatccctcgcagctgagcgtacgccagagtacgagc 480 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 1744 ggagccactgccaagctgttgcatcatccctcgcagctgagcgtagcccagagtacgagc 1803 Query: 481 actttggcctcagctggcggagtcaatggcagccgcatgatcagcatgccctccaacgga 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1804 actttggcctcagctggcggagtcaatggcagccgcatgatcagcatgccctccaacgga 1863 Query: 541 gatattctccagatccagccgaatggtggtggcaccgttctggtggtcaacctgccacct 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1864 gatattctccagatccagccgaatggtggtggcaccgttctggtggtcaacctgccacct 1923 Query: 601 gctagcagctcgcacgatataaacggccaactcgacggcaggccaac-gcagcggtaacc 659 |||||||||||||||||||||||||||||||||| | ||||||||| || |||||||| Sbjct: 1924 gctagcagctcgcacgatataaacggccaactcgcggccaggccaacggccacggtaacc 1983 Query: 660 tccagcggtgttctggccggag-ctgct-cagcggcacccttatcagcaccaccagcagc 717 |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 1984 tccagcggtgttctggccggagcctgctccagcggcacccttatcagcaccaccagcagc 2043 Query: 718 cagtacatcgagcagcccattgccaatagcacaaataatgc 758 |||||||||| |||||||||||||||||||||||||||| Sbjct: 2044 cagtacatcg---agcccattgccaatagcacaaataatgc 2081 >neur-RB feature: mRNA loc=3R:complement(4846083..4847778,4847841..4849582, 4858916..4859464);ID=FBan0011988;gene_id=FBgn0002932;gene _sym=neur;sym=CG11988;scaffold=AE003681;len=3987 Length = 3987 Score = 1348 bits (680), Expect = 0.0 Identities = 744/761 (97%), Gaps = 6/761 (0%) Strand = Plus / Plus Query: 1 gctttgggtctgacctcctgcaatccggccatgttgcagcccaatgatttgcccaatgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1560 gctttgggtctgacctcctgcaatccggccatgttgcagcccaatgatttgcccaatgat 1619 Query: 61 tcggatttcctgctcgatcgccccgagtactgggtggtgagcaaggatattgcagctgct 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1620 tcggatttcctgctcgatcgccccgagtactgggtggtgagcaaggatattgcagctgct 1679 Query: 121 cctcagcgcggcgatgagattgccttcttcgtggcgcccaacggtgaagtgagcatcagc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1680 cctcagcgcggcgatgagattgccttcttcgtggcgcccaacggtgaagtgagcatcagc 1739 Query: 181 aagaacaacggaccagctgtggtggtgatgcatgtggaccagtccctccagctgtgggcc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1740 aagaacaacggaccagctgtggtggtgatgcatgtggaccagtccctccagctgtgggcc 1799 Query: 241 ttcctggatgtctacggctcgacgcagtctctgaggatgttccgccagcagttacccaac 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1800 ttcctggatgtctacggctcgacgcagtctctgaggatgttccgccagcagttacccaac 1859 Query: 301 atggttgcgtatccatcgcagccgcagtcanatgtgaatgccagcagctcgtccgcctgc 360 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 1860 atggttgcgtatccatcgcagccgcaggtcaatgtgaatgccagcagctcgtccgcctgc 1919 Query: 361 aacgctgcctccacgtcccgcatgctgcccatgaccgagtcgatgagcagtctgaatgcc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1920 aacgctgcctccacgtcccgcatgctgcccatgaccgagtcgatgagcagtctgaatgcc 1979 Query: 421 ggagccactgccaagctgttgcatcatccctcgcagctgagcgtacgccagagtacgagc 480 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 1980 ggagccactgccaagctgttgcatcatccctcgcagctgagcgtagcccagagtacgagc 2039 Query: 481 actttggcctcagctggcggagtcaatggcagccgcatgatcagcatgccctccaacgga 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2040 actttggcctcagctggcggagtcaatggcagccgcatgatcagcatgccctccaacgga 2099 Query: 541 gatattctccagatccagccgaatggtggtggcaccgttctggtggtcaacctgccacct 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2100 gatattctccagatccagccgaatggtggtggcaccgttctggtggtcaacctgccacct 2159 Query: 601 gctagcagctcgcacgatataaacggccaactcgacggcaggccaac-gcagcggtaacc 659 |||||||||||||||||||||||||||||||||| | ||||||||| || |||||||| Sbjct: 2160 gctagcagctcgcacgatataaacggccaactcgcggccaggccaacggccacggtaacc 2219 Query: 660 tccagcggtgttctggccggag-ctgct-cagcggcacccttatcagcaccaccagcagc 717 |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| Sbjct: 2220 tccagcggtgttctggccggagcctgctccagcggcacccttatcagcaccaccagcagc 2279 Query: 718 cagtacatcgagcagcccattgccaatagcacaaataatgc 758 |||||||||| |||||||||||||||||||||||||||| Sbjct: 2280 cagtacatcg---agcccattgccaatagcacaaataatgc 2317 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 25,600 Number of Sequences: 18737 Number of extensions: 25600 Number of successful extensions: 795 Number of sequences better than 1.0e-100: 4 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 781 Number of HSP's gapped (non-prelim): 4 length of query: 758 length of database: 41,270,998 effective HSP length: 17 effective length of query: 741 effective length of database: 40,952,469 effective search space: 30345779529 effective search space used: 30345779529 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA816946|AA816946 LD21829.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD21829 5 similar to CG9853: FBan0009853 GO:[] located on: 3R 82B1-82B1;: 08/13/2002, mRNA sequence. (475 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG9853-RA feature: mRNA loc=3R:complement(224279..225106,225167.... 878 0.0 >CG9853-RA feature: mRNA loc=3R:complement(224279..225106,225167..225401, 225463..225911, 227443..227702);ID=FBan0009853;gene_id=FBgn0037243;gene_ sym=CG9853;sym=CG9853;scaffold=AE003606;len=1772 Length = 1772 Score = 878 bits (443), Expect = 0.0 Identities = 469/475 (98%), Gaps = 2/475 (0%) Strand = Plus / Plus Query: 1 ccgatagtttgtcatcgggaagctggtatatgtaaatacaaaataaattataaaaattgg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 440 ccgatagtttgtcatcgggaagctggtatatgtaaatacaaaataaattataaaaattgg 499 Query: 61 cttccacataattgagaaggtcgctgaaagctagctgaataaaccccgcaaataaccaaa 120 ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| Sbjct: 500 cttccacataattgagaaggtcgctgaaagcgtac-gaataaaccccgcaaataaccaaa 558 Query: 121 tgtctgccgccgagacaggtccaatagccagcggcagtgcgtgtgtccactggacagcgc 180 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 559 tgtctgccgccgagacaggtccaatagccagcggcagtgcg-gtgtccactggacagcgc 617 Query: 181 ggtgtcagccgagtacttgccaagttgtcccagtctctggcaggaggagaattctatgaa 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 618 ggtgtcagccgagtacttgccaagttgtcccagtctctggcaggaggagaattctatgaa 677 Query: 241 gcgcacatgatgtataggacgctgtattttcggtatacggcgcagaaacgctatcaggac 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 678 gcgcacatgatgtataggacgctgtattttcggtatacggcgcagaaacgctatcaggac 737 Query: 301 tgcctggaactgctctttgatggagcacagcagcttattgccaaggaacaggaaagcagc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 738 tgcctggaactgctctttgatggagcacagcagcttattgccaaggaacaggaaagcagc 797 Query: 361 gccgcggacctatgtctccttctggtggacacgttagagaagcgaggaccacaggcggaa 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 798 gccgcggacctatgtctccttctggtggacacgttagagaagcgaggaccacaggcggaa 857 Query: 421 gataccgacaacttcctgtgggttccacgcctaggggccttgatccgcggcctta 475 |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 858 gataccgacaacttcctgtgggttccacgcctaggggctttgatccgcggcctta 912 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,048 Number of Sequences: 18737 Number of extensions: 11048 Number of successful extensions: 244 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 241 Number of HSP's gapped (non-prelim): 1 length of query: 475 length of database: 41,270,998 effective HSP length: 17 effective length of query: 458 effective length of database: 40,952,469 effective search space: 18756230802 effective search space used: 18756230802 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA817175|AA817175 LD22345.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD22345 5 similar to CG6845: FBan0006845 located on: 3L 61A4-61A4;: 04/16/2001, mRNA sequence. (757 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG6845-RA feature: mRNA loc=3L:join(127083..127336,127402..12802... 1471 0.0 >CG6845-RA feature: mRNA loc=3L:join(127083..127336,127402..128028, 128083..128296,128360..128513,128566..129043, 129092..129275,129334..129471, 129525..129689);ID=FBan0006845;gene_id=FBgn0035099;gene_ sym=CG6845;sym=CG6845;scaffold=AE003467;len=2214 Length = 2214 Score = 1471 bits (742), Expect = 0.0 Identities = 755/758 (99%), Gaps = 1/758 (0%) Strand = Plus / Plus Query: 1 ttgtgttagactttacaaataaattacaaagaaatcgatcaaaataaaatcatggaagaa 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ttgtgttagactttacaaataaattacaaagaaatcgatcaaaataaaatcatggaagaa 60 Query: 61 agtcagccaaggtatggcgctatgtggacattcaagctggtggcaccatacgtaattggc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 agtcagccaaggtatggcgctatgtggacattcaagctggtggcaccatacgtaattggc 120 Query: 121 ggctacctatgcggcctcgcggtaac-ctcgcatggaactggtggcagctgggccacttg 179 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 121 ggctacctatgcggcctcgcggtaacgctcgcatggaactggtggcagctgggccacttg 180 Query: 180 gttctgggtcttaatctcaccttcgcgattccggtggcgcttgttctggcggtcttttac 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 gttctgggtcttaatctcaccttcgcgattccggtggcgcttgttctggcggtcttttac 240 Query: 240 agcaggcccgtaaggtgcattgtgactttggcccttccctcgctgtgcagctctcgggga 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 agcaggcccgtaaggtgcattgtgactttggcccttccctcgctgtgcagctctcgggga 300 Query: 300 agggcgttcctcatcagccttgcctttgttattgccgcagttgggcctacggcgaacatt 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 agggcgttcctcatcagccttgcctttgttattgccgcagttgggcctacggcgaacatt 360 Query: 360 ctagccaatttgaaggtgatgctccgcagcctcgcttgcggacaggagctattgcgtcag 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 ctagccaatttgaaggtgatgctccgcagcctcgcttgcggacaggagctattgcgtcag 420 Query: 420 gcgcttggccagatgttggacgtaatactggagccggtgaatgccatccagctagcggtg 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 gcgcttggccagatgttggacgtaatactggagccggtgaatgccatccagctagcggtg 480 Query: 480 gatctcttgatgcgggaagtgcgtcgggtgctcaagctggccatggtagtgctgttacgc 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 gatctcttgatgcgggaagtgcgtcgggtgctcaagctggccatggtagtgctgttacgc 540 Query: 540 attcaggaccaattgatcgcaattagtgagtatctgtattaaaaagtgctgcagttttct 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 attcaggaccaattgatcgcaattagtgagtatctgtattaaaaagtgctgcagttttct 600 Query: 600 ctgctgattcatttttgtagttaaaaccctgaagaactgcgccgcttggctgaaatccat 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 601 ctgctgattcatttttgtagttaaaaccctgaagaactgcgccgcttggctgaaatccat 660 Query: 660 cgtagacctgtgtcacacagaaatgggcactccctgggcacgttgcaaaaagacggcgca 719 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 661 cgtagacctgtgcaacacagaaatgggcactccctgggcacgttgcaaaaagacggcgca 720 Query: 720 tcacgcaatgatcaggtgccagtcaaagatgggcgtat 757 |||||||||||||||||||||||||||||||||||||| Sbjct: 721 tcacgcaatgatcaggtgccagtcaaagatgggcgtat 758 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 17,078 Number of Sequences: 18737 Number of extensions: 17078 Number of successful extensions: 336 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 334 Number of HSP's gapped (non-prelim): 1 length of query: 757 length of database: 41,270,998 effective HSP length: 17 effective length of query: 740 effective length of database: 40,952,469 effective search space: 30304827060 effective search space used: 30304827060 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA940716|AA940716 LD22859.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD22859 5prime, mRNA sequence. (738 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG5383-RA feature: mRNA loc=3R:complement(18177462..18179219);ID... 1429 0.0 >CG5383-RA feature: mRNA loc=3R:complement(18177462..18179219);ID=FBan0005383;gen e_id=FBgn0038948;gene_sym=CG5383;sym=CG5383;scaffold=AE0 03738;len=1758 Length = 1758 Score = 1429 bits (721), Expect = 0.0 Identities = 733/737 (99%) Strand = Plus / Plus Query: 2 gaaaattggccaatttcagcaggatgagcgaggaattcaagctgcccaagcgttcccgca 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 216 gaaaattggccaatttcagcaggatgagcgaggaattcaagctgcccaagcgttcccgca 275 Query: 62 agcgcacacgtgaggtgaagcgcaaggctcgtccggagctggacggcgagaatgcctggt 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 276 agcgcacacgtgaggtgaagcgcaaggctcgtccggagctggacggcgagaatgcctggt 335 Query: 122 cggccatgcggtactgtgagaagttcgagccattttgggatttcaccgataacctggagc 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 336 cggccatgcggtactgtgagaagttcgagccattttgggatttcaccgataacctggagc 395 Query: 182 ggatcgaggagtcgcaggtgccggagtcggagttcatcgaacgcttcgagcgaccctaca 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 396 ggatcgaggagtcgcaggtgccggagtcggagttcatcgaacgcttcgagcgaccctaca 455 Query: 242 agccggtggtcattcgcggctgcaccgatggctggttggcgctggaaaagtggacactag 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 456 agccggtggtcattcgcggctgcaccgatggctggttggcgctggaaaagtggacactag 515 Query: 302 cccgcctggccaagaagtatcgcaaccagaagttcaagtgcggcgaggacaacgagggct 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 516 cccgcctggccaagaagtatcgcaaccagaagttcaagtgcggcgaggacaacgagggct 575 Query: 362 atagcgtcaagatgaagatgaagtactacgtggagtacatgcagagcacgcgcgatgaca 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 576 atagcgtcaagatgaagatgaagtactacgtggagtacatgcagagcacgcgcgatgaca 635 Query: 422 gcccgctgtacatcttcgacagcagcttcggcgaacaccatcgtcggcgcaacgtcctgg 481 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 636 gcccgctgtacatcttcgacagcagcttcggcgaacaccatcgtcggcgcaagctcctgg 695 Query: 482 atgactatgtggtgcccaagtattttcgcgacgacctcttccagtactgcggcgagaatc 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 696 atgactatgtggtgcccaagtattttcgcgacgacctcttccagtactgcggcgagaatc 755 Query: 542 gtcgtccgccttaccgctggtttgtcatgggaccggctcgctccggcaccggcatccaca 601 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 756 gtcgtccgccttaccgctggtttgtcatgggaccggctcgctccggcaccggcatccaca 815 Query: 602 ttgatccactgggcactagtgctcggaacacgctgatccgcggccacaagcgctggtgcc 661 |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 816 ttgatccactgggcactagtgcctggaacacgctgatccgcggccacaagcgctggtgcc 875 Query: 662 tgttccccacccaaacgcccaaggagctgctcaaggtcaccagtgccatgggtggcaagc 721 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 876 tgttccccacccaaacgcccaaggagctgctcaaggtcaccagtgccatgggtggcaagc 935 Query: 722 agcgagacgaggccatc 738 ||||||||||||||||| Sbjct: 936 agcgagacgaggccatc 952 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 20,347 Number of Sequences: 18737 Number of extensions: 20347 Number of successful extensions: 589 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 587 Number of HSP's gapped (non-prelim): 2 length of query: 738 length of database: 41,270,998 effective HSP length: 17 effective length of query: 721 effective length of database: 40,952,469 effective search space: 29526730149 effective search space used: 29526730149 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA942088|AA942088 LD26123.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD26123 5 similar to CG10621: FBan0010621 located on: 2L 37B8-37B8;: 04/10/2001, mRNA sequence. (628 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG10621-RA feature: mRNA loc=2L:complement(18930289..18931080,18... 1231 0.0 >CG10621-RA feature: mRNA loc=2L:complement(18930289..18931080,18931241..18931420, 18931487..18931656, 18932355..18932504);ID=FBan0010621;gene_id=FBgn0032726;g ene_sym=CG10621;sym=CG10621;scaffold=AE003661;len=1292 Length = 1292 Score = 1231 bits (621), Expect = 0.0 Identities = 628/629 (99%), Gaps = 1/629 (0%) Strand = Plus / Plus Query: 1 agcgtccattgcgactgatcatatccaccgttccgaaagatttgtgataaccacttgata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 13 agcgtccattgcgactgatcatatccaccgttccgaaagatttgtgataaccacttgata 72 Query: 61 accaaccagccagtctagtgtctaataaagttgttattgaatttgcccatttacaagatc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 73 accaaccagccagtctagtgtctaataaagttgttattgaatttgcccatttacaagatc 132 Query: 121 cataaacaagctgtcaagtaatctttcaatcatgggtttgacgcgcgtgctggtgaagga 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 133 cataaacaagctgtcaagtaatctttcaatcatgggtttgacgcgcgtgctggtgaagga 192 Query: 181 tggcggtttcggcacccagatgaccgtccatgtgggtgactctgtggatggggatccgct 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 193 tggcggtttcggcacccagatgaccgtccatgtgggtgactctgtggatggggatccgct 252 Query: 241 atggagtgcccgcttcaatgccaccaatccggcggccattatcagcacccacctggactt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 253 atggagtgcccgcttcaatgccaccaatccggcggccattatcagcacccacctggactt 312 Query: 301 tttgcagaatggtgccgatatcattttgaccaacacctaccagtccagtgtcgatggtta 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 313 tttgcagaatggtgccgatatcattttgaccaacacctaccagtccagtgtcgatggtta 372 Query: 361 catggagtacctggagctggacgaggagcagagcatcgagctgataaagaacacggtccg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 373 catggagtacctggagctggacgaggagcagagcatcgagctgataaagaacacggtccg 432 Query: 421 cctggcccacatcgccaaggaacgctatctcaccgagtgctatcaggcgca-ctgtcggt 479 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 433 cctggcccacatcgccaaggaacgctatctcaccgagtgctatcaggcgcagctgtcggt 492 Query: 480 gcaggagggataccctttgatcattgcctccattggaccctttggggcccacctgcacga 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 493 gcaggagggataccctttgatcattgcctccattggaccctttggggcccacctgcacga 552 Query: 540 tggctccgagtacaccggtagctatgccgactttgtgccggccaaggagattacggactg 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 553 tggctccgagtacaccggtagctatgccgactttgtgccggccaaggagattacggactg 612 Query: 600 gcatcgcgtgaggatcgaagcgtgcttgg 628 ||||||||||||||||||||||||||||| Sbjct: 613 gcatcgcgtgaggatcgaagcgtgcttgg 641 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,900 Number of Sequences: 18737 Number of extensions: 14900 Number of successful extensions: 415 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 413 Number of HSP's gapped (non-prelim): 1 length of query: 628 length of database: 41,270,998 effective HSP length: 17 effective length of query: 611 effective length of database: 40,952,469 effective search space: 25021958559 effective search space used: 25021958559 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA942380|AA942380 LD26545.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD26545 5 similar to CG2107: FBan0002107 located on: 3L 63B1-63B1;: 04/10/2001, mRNA sequence. (822 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG2107-RA feature: mRNA loc=3L:join(2961652..2962815,2962877..29... 1568 0.0 >CG2107-RA feature: mRNA loc=3L:join(2961652..2962815,2962877..2963671, 2963789..2964180);ID=FBan0002107;gene_id=FBgn0035383;gene _sym=CG2107;sym=CG2107;scaffold=AE003476;len=2351 Length = 2351 Score = 1568 bits (791), Expect = 0.0 Identities = 815/819 (99%), Gaps = 3/819 (0%) Strand = Plus / Minus Query: 1 ttttcagtgtataatctataaattgtagataaagatattgcaattcagacacatgggata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2249 ttttcagtgtataatctataaattgtagataaagatattgcaattcagacacatgggata 2190 Query: 61 caatgtaaaagcatcaaaataaatctccctgttacgttaaagccatattcattggattcg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2189 caatgtaaaagcatcaaaataaatctccctgttacgttaaagccatattcattggattcg 2130 Query: 121 gggtcggactcctcacgattttctcctacttcttgctactgctgctctgctggatgacag 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2129 gggtcggactcctcacgattttctcctacttcttgctactgctgctctgctggatgacag 2070 Query: 181 cgcaaattttatcaaatgccgattccagactgtctatgaacaccttcccatcggcctggt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2069 cgcaaattttatcaaatgccgattccagactgtctatgaacaccttcccatcggcctggt 2010 Query: 241 ttttgtacgtggtgacaatggcgccggcaaaatcgttctgaatcgaatagccgattccga 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2009 ttttgtacgtggtgacaatggcgccggcaaaatcgttctgaatcgaatagccgattccga 1950 Query: 301 agccattcttgaccaccggaccaaaggaacccgctagcagggcatctgaacccagtgttg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1949 agccattcttgaccaccggaccaaaggaacccgctagcagggcatctgaacccagtgttg 1890 Query: 361 aggtactaatgatgttgttattaatgcgcttgtaagcctcagtctcatagagatcgggaa 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1889 aggtactaatgatgttgttattaatgcgcttgtaagcctcagtctcatagagatcgggaa 1830 Query: 421 ttggtattccctccttttgggccgtgtgccgaagggcaaagagatgccgatcgaagccct 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1829 ttggtattccctccttttgggccgtgtgccgaagggcaaagagatgccgatcgaagccct 1770 Query: 481 ggcccatagccgcctccttggttaactggccatgcaccttgctgcaattgtcgatcattg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1769 ggcccatagccgcctccttggttaactggccatgcaccttgctgcaattgtcgatcattg 1710 Query: 541 ctcgtagttctccggcgctgggcttgctcctctccggctggaggatagcttcacagaagt 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1709 ctcgtagttctccggcgctgggcttgctcctctccggctggaggatagcttcacagaagt 1650 Query: 601 cccgtgtggcatttgtgcacggtcgcatcgtttcggtacgtccgtgtcggaaggcggatg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1649 cccgtgtggcatttgtgcacggtcgcatcgtttcggtacgtccgtgtcggaaggcggatg 1590 Query: 661 tgctgcaggattcgtagctgcccacatagccgctgtaggcttggcgataag-cagctgga 719 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1589 tgctgcaggattcgtagctgcccacatagccgctgtaggcttggcgataagccagctgga 1530 Query: 720 aggacagctgaatgatggagtccggacttagggcatactgcttgcatgtgggcttgttga 779 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 1529 aggacagctgaatgatggagtccggacttaggccatactgcttgcatgtgggcttgttga 1470 Query: 780 tgtgtgggtac-tcagcacattcatgt-cagattatcta 816 ||||||||||| ||||||||||||||| ||||||||||| Sbjct: 1469 tgtgtgggtacttcagcacattcatgtccagattatcta 1431 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 18,288 Number of Sequences: 18737 Number of extensions: 18288 Number of successful extensions: 433 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 430 Number of HSP's gapped (non-prelim): 1 length of query: 822 length of database: 41,270,998 effective HSP length: 17 effective length of query: 805 effective length of database: 40,952,469 effective search space: 32966737545 effective search space used: 32966737545 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA942606|AA942606 LD26923.3prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD26923 3prime, mRNA sequence. (416 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG14224-RA feature: mRNA loc=X:join(19414708..19415056,19415400.... 593 e-169 >CG14224-RA feature: mRNA loc=X:join(19414708..19415056,19415400..19416870, 19416950..19418205);ID=FBan0014224;gene_id=FBgn0031057;ge ne_sym=CG14224;sym=CG14224;scaffold=AE003512;len=3076 Length = 3076 Score = 593 bits (299), Expect = e-169 Identities = 319/329 (96%) Strand = Plus / Minus Query: 88 cacacattaacttacagtagatatcgttagcatgcaaatcgcttgtgtgcaacaactttt 147 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2984 cacacattaacttacagtagatatcgttagcatgcaaatcgcttgtgtgcaacaactttt 2925 Query: 148 tacatttgtattcctctgaacgggatgtgggataaataacgcttggagattgctcttata 207 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2924 tacatttgtattcctctgaacgggatgtgggataaataacgcttggagattgctcttata 2865 Query: 208 ttaacgaatcgataaacattttgattgactacagcatactcgcgcgtatgttaggattcc 267 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2864 ttaacgaatcgataaacattttgattgactacagcatactcgcgcgtatgttaggattcc 2805 Query: 268 cccaagacagtgtcgtctttgcatatagccgatatctactgtacgtttgtcctgtttgca 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2804 cccaagacagtgtcgtctttgcatatagccgatatctactgtacgtttgtcctgtttgca 2745 Query: 328 gttgtttgcaatttccagaacgttttccgatcgcgagaaatggannnnnnnnnnagtcag 387 |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 2744 gttgtttgcaatttccagaacgttttccgatcgcgagaaatggaggggggggggagtcag 2685 Query: 388 aaggactgcggctatagcccacgcccact 416 ||||||||||||||||||||||||||||| Sbjct: 2684 aaggactgcggctatagcccacgcccact 2656 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6575 Number of Sequences: 18737 Number of extensions: 6575 Number of successful extensions: 486 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 481 Number of HSP's gapped (non-prelim): 5 length of query: 416 length of database: 41,270,998 effective HSP length: 17 effective length of query: 399 effective length of database: 40,952,469 effective search space: 16340035131 effective search space used: 16340035131 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA949938|AA949938 LD28511.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD28511 5 similar to CG2702: FBan0002702 'DNA binding' located on: 3R 84E5-84E6;: 04/10/2001, mRNA sequence. (612 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG2702-RA feature: mRNA loc=3R:join(3839561..3840036,3840148..38... 1205 0.0 >CG2702-RA feature: mRNA loc=3R:join(3839561..3840036,3840148..3840703, 3840764..3842345);ID=FBan0002702;gene_id=FBgn0037540;gene _sym=CG2702;sym=CG2702;scaffold=AE003677;len=2614 Length = 2614 Score = 1205 bits (608), Expect = 0.0 Identities = 611/612 (99%) Strand = Plus / Plus Query: 1 aaacagtgtaataaactggaaaaaagtcgtggaatacttcccggacaagtccaaatcaac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 926 aaacagtgtaataaactggaaaaaagtcgtggaatacttcccggacaagtccaaatcaac 985 Query: 61 gctgattggtcgttactactacgtgttgcatcctagcatcagtcacgaacccttcactac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 986 gctgattggtcgttactactacgtgttgcatcctagcatcagtcacgaacccttcactac 1045 Query: 121 caaggaggacatgatgctgttcgccgccgttgaagagtacaatggaaagtttcactgttt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1046 caaggaggacatgatgctgttcgccgccgttgaagagtacaatggaaagtttcactgttt 1105 Query: 181 tccgcgttctcttttcccaaaccggtcgttaacccaactccgaactcgctaccacaatgt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1106 tccgcgttctcttttcccaaaccggtcgttaacccaactccgaactcgctaccacaatgt 1165 Query: 241 actggcacaacgcaacaagaccgactcctggtccgttcaggacgacacacggctgatgag 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1166 actggcacaacgcaacaagaccgactcctggtccgttcaggacgacacacggctgatgag 1225 Query: 301 cttcgtaacgcaatacggggcttcccagtggcttaactgtgccacgttcttgggcaatca 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1226 cttcgtaacgcaatacggggcttcccagtggcttaactgtgccacgttcttgggcaatca 1285 Query: 361 cacgcggaccagctgtcgaacccgcttcctagtcatcaagaaattccttgaacaaaatcc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1286 cacgcggaccagctgtcgaacccgcttcctagtcatcaagaaattccttgaacaaaatcc 1345 Query: 421 caatgcaaaagtggaagacctgccacgccgccgatcgaagaaggtgtccttggttaactc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1346 caatgcaaaagtggaagacctgccacgccgccgatcgaagaaggtgtccttggttaactc 1405 Query: 481 tgataactgggcgcagcgtttgcaagagtggcaagaggacccagagtcattagttaatga 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1406 tgataactgggcgcagcgtttgcaagagtggcaagaggacccagagtcattagttaatga 1465 Query: 541 taaccccccgaaaggaactcgggtgcgcggtccccaatcgaaaaaggctaggatcgagcg 600 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 1466 taaccccccgaaaggaactcgggtgcgcggtcccaaatcgaaaaaggctaggatcgagcg 1525 Query: 601 acaggcagagag 612 |||||||||||| Sbjct: 1526 acaggcagagag 1537 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,035 Number of Sequences: 18737 Number of extensions: 11035 Number of successful extensions: 236 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 235 Number of HSP's gapped (non-prelim): 1 length of query: 612 length of database: 41,270,998 effective HSP length: 17 effective length of query: 595 effective length of database: 40,952,469 effective search space: 24366719055 effective search space used: 24366719055 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA949990|AA949990 LD28579.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD28579 5prime, mRNA sequence. (634 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG7085-RA feature: mRNA loc=2L:join(2219104..2219848,2221833..22... 714 0.0 CG15387-RA feature: mRNA loc=2L:complement(2218365..2218568,2218... 369 e-101 >CG7085-RA feature: mRNA loc=2L:join(2219104..2219848,2221833..2221960, 2222024..2222142,2222205..2222380, 2222445..2223670);ID=FBan0007085;gene_id=FBgn0031402;gen e_sym=CG7085;sym=CG7085;scaffold=AE003584;len=2394 Length = 2394 Score = 714 bits (360), Expect = 0.0 Identities = 360/360 (100%) Strand = Plus / Plus Query: 275 tgtgaaactcccaacgtcgagtcagcaaattgtgccacacacacaaaacgaggaaagagg 334 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 371 tgtgaaactcccaacgtcgagtcagcaaattgtgccacacacacaaaacgaggaaagagg 430 Query: 335 aagaagagcagcagcagaaaaacataggtgctccgctcgcatcccacatctccaaaactc 394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 431 aagaagagcagcagcagaaaaacataggtgctccgctcgcatcccacatctccaaaactc 490 Query: 395 catcgatccgaacttcccgactacccaacccaactctccggaatgaatcgctccgacgga 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 491 catcgatccgaacttcccgactacccaacccaactctccggaatgaatcgctccgacgga 550 Query: 455 ttggtgcgtcgctcggtgaaaccccgcgaaaacggtggggcggagggtgggttgaatgcc 514 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 551 ttggtgcgtcgctcggtgaaaccccgcgaaaacggtggggcggagggtgggttgaatgcc 610 Query: 515 aacacgccggacgacaaccaggatgcactggacaacctaaaggaccaggaggacaatatc 574 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 611 aacacgccggacgacaaccaggatgcactggacaacctaaaggaccaggaggacaatatc 670 Query: 575 gacgatggcgactccaaggaaacacgactaacgctcatggaggaggttctgctgctggga 634 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 671 gacgatggcgactccaaggaaacacgactaacgctcatggaggaggttctgctgctggga 730 Score = 369 bits (186), Expect = e-101 Identities = 186/186 (100%) Strand = Plus / Plus Query: 1 gccaatgcaaatgcaccattagtacgggccaccaaattgtaaatcaaaccgtcgagttcc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 97 gccaatgcaaatgcaccattagtacgggccaccaaattgtaaatcaaaccgtcgagttcc 156 Query: 61 cagcgcaaaaacgccgagcaaagcagcaacaacgaaacgcagtttagggcctgcattttt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 157 cagcgcaaaaacgccgagcaaagcagcaacaacgaaacgcagtttagggcctgcattttt 216 Query: 121 gcgatagtgtgaaaagtgcgtgtgtgcaaaagaatacaaaataaagggggcgcaaaagag 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 217 gcgatagtgtgaaaagtgcgtgtgtgcaaaagaatacaaaataaagggggcgcaaaagag 276 Query: 181 tcagtg 186 |||||| Sbjct: 277 tcagtg 282 >CG15387-RA feature: mRNA loc=2L:complement(2218365..2218568,2218626..2218746, 2219043..2219407);ID=FBan0015387;gene_id=FBgn0031403;gen e_sym=CG15387;sym=CG15387;scaffold=AE003584;len=690 Length = 690 Score = 369 bits (186), Expect = e-101 Identities = 186/186 (100%) Strand = Plus / Minus Query: 1 gccaatgcaaatgcaccattagtacgggccaccaaattgtaaatcaaaccgtcgagttcc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 208 gccaatgcaaatgcaccattagtacgggccaccaaattgtaaatcaaaccgtcgagttcc 149 Query: 61 cagcgcaaaaacgccgagcaaagcagcaacaacgaaacgcagtttagggcctgcattttt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 148 cagcgcaaaaacgccgagcaaagcagcaacaacgaaacgcagtttagggcctgcattttt 89 Query: 121 gcgatagtgtgaaaagtgcgtgtgtgcaaaagaatacaaaataaagggggcgcaaaagag 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 88 gcgatagtgtgaaaagtgcgtgtgtgcaaaagaatacaaaataaagggggcgcaaaagag 29 Query: 181 tcagtg 186 |||||| Sbjct: 28 tcagtg 23 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 26,846 Number of Sequences: 18737 Number of extensions: 26846 Number of successful extensions: 521 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 517 Number of HSP's gapped (non-prelim): 4 length of query: 634 length of database: 41,270,998 effective HSP length: 17 effective length of query: 617 effective length of database: 40,952,469 effective search space: 25267673373 effective search space used: 25267673373 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA950046|AA950046 LD29996.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD29996 5prime, mRNA sequence. (706 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG11999-RA feature: mRNA loc=3R:complement(1179436..1180152,1180... 1348 0.0 >CG11999-RA feature: mRNA loc=3R:complement(1179436..1180152, 1180280..1180466);ID=FBan0011999;gene_id=FBgn0037312;gen e_sym=CG11999;sym=CG11999;scaffold=AE003603;len=904 Length = 904 Score = 1348 bits (680), Expect = 0.0 Identities = 703/708 (99%), Gaps = 2/708 (0%) Strand = Plus / Plus Query: 1 aaaatagcaattgtttgcgtgtgcaa-gctgatttcaaccgtaattgccggtacagattg 59 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 19 aaaatagcaattgtttgcgtgtgcaacgctgatttcaaccgtaattgccggtacagattg 78 Query: 60 actgacttaggtccacggactaggatacgataactagaacaggacacgatgcagcacata 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79 actgacttaggtccacggactaggatacgataactagaacaggacacgatgcagcacata 138 Query: 120 ctacttcttacaggactggcgctggtaggcagcatttccaggggagccgccaccgaatcc 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 139 ctacttcttacaggactggcgctggtaggcagcatttccaggggagccgccaccgaatcc 198 Query: 180 aacgtggtcacctgcggctccatcctgaagctgctcaactcggactacgccttccgcctg 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 199 aacgtggtcacctgcggctccatcctgaagctgctcaactcggactacgccttccgcctg 258 Query: 240 cactcccacgacgtcaagtacggatctggttccgggcagcagtcggtgacgggcgtggag 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 259 cactcccacgacgtcaagtacggatctggttccgggcagcagtcggtgacgggcgtggag 318 Query: 300 cagaaggaggacgtgaacagccactgggtgatcaaggcgcagaccggcgagctttgtgaa 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 319 cagaaggaggacgtgaacagccactgggtgatcaaggcgcagaccggcgagctttgtgaa 378 Query: 360 aggggcgagcccatcgcctgcggatccaccgtgcgactggagcacctgtccaccaagaag 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 379 aggggcgagcccatcgcctgcggatccaccgtgcgactggagcacctgtccaccaagaag 438 Query: 420 aacctgcactcgcaccacttttcgtcgccgctctcaggcgagcaggaggtgtccgcgtac 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 439 aacctgcactcgcaccacttttcgtcgccgctctcaggcgagcaggaggtgtccgcgtac 498 Query: 480 ggaacggatggactcggcgacaccggcgaccactgggaggtggtctgctccaacgagaac 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 499 ggaacggatggactcggcgacaccggcgaccactgggaggtggtctgctccaacgagaac 558 Query: 540 tggatgcgcagtgcccacgttaggctgcg-cacatcgacaccggcatgtacctgggcatg 598 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 559 tggatgcgcagtgcccacgttaggctgcgccacatcgacaccggcatgtacctgggcatg 618 Query: 599 tccggccgctcctatggcagacccatctccgtgcaaatggaaatcgttggcgtccacaag 658 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 619 tccggccgctcctatggcagacccatctccggccaaatggaaatcgttggcgtccacaag 678 Query: 659 ccgcagcacggaacgcgctggaccacggcggacggcctctttatcgtg 706 |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 679 ccgcagcacggaacgcgctggaccacggcggagggcctctttatcgtg 726 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 17,445 Number of Sequences: 18737 Number of extensions: 17445 Number of successful extensions: 432 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 429 Number of HSP's gapped (non-prelim): 1 length of query: 706 length of database: 41,270,998 effective HSP length: 17 effective length of query: 689 effective length of database: 40,952,469 effective search space: 28216251141 effective search space used: 28216251141 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA951480|AA951480 LD31958.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD31958 5prime, mRNA sequence. (495 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Eno-RE feature: mRNA loc=2L:complement(1726636..1728320,1729311.... 981 0.0 Eno-RD feature: mRNA loc=2L:complement(1726636..1728320,1729311.... 981 0.0 Eno-RC feature: mRNA loc=2L:complement(1726636..1728320,1729311.... 981 0.0 Eno-RB feature: mRNA loc=2L:complement(1726636..1728320,1729311.... 981 0.0 Eno-RA feature: mRNA loc=2L:complement(1726636..1728320,1729311.... 981 0.0 >Eno-RE feature: mRNA loc=2L:complement(1726636..1728320,1729311..1729545, 1729719..1729897, 1730940..1731243);ID=FBan0017654;gene_id=FBgn0000579;gene _sym=Eno;sym=CG17654;scaffold=AE003585;len=2403 Length = 2403 Score = 981 bits (495), Expect = 0.0 Identities = 495/495 (100%) Strand = Plus / Minus Query: 1 atattcaaagctctcggcaactgaacgaatatcttgcacatagtgttttttattcttttg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2344 atattcaaagctctcggcaactgaacgaatatcttgcacatagtgttttttattcttttg 2285 Query: 61 tttataaataatgattagatcaaggtttagcattaattaataatgtctaagaacgaagca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2284 tttataaataatgattagatcaaggtttagcattaattaataatgtctaagaacgaagca 2225 Query: 121 tagagacagcaaatgggtttggtagtttaattctgatgtatttgtgcgccagacacaagt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2224 tagagacagcaaatgggtttggtagtttaattctgatgtatttgtgcgccagacacaagt 2165 Query: 181 tccgaacgtaaaaggttgacgaacacgtgcaccgccgcctttccatggatctactgcgtc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2164 tccgaacgtaaaaggttgacgaacacgtgcaccgccgcctttccatggatctactgcgtc 2105 Query: 241 cagctccctctccaagatccagatctcattcgatggggctggtgtggttggaatttcgaa 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2104 cagctccctctccaagatccagatctcattcgatggggctggtgtggttggaatttcgaa 2045 Query: 301 gtgccctgcgcttactgcggcttcctgaacgacttgccggcgaacttgacgccagcgccg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2044 gtgccctgcgcttactgcggcttcctgaacgacttgccggcgaacttgacgccagcgccg 1985 Query: 361 atctcctcctcgatgcgcaggatctggttgtacttggccagacgctccgagcggcatgga 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1984 atctcctcctcgatgcgcaggatctggttgtacttggccagacgctccgagcggcatgga 1925 Query: 421 gctccggtcttgatctggccggtggacagaccgacgaccaggtcaccgatgaacgagtcc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1924 gctccggtcttgatctggccggtggacagaccgacgaccaggtcaccgatgaacgagtcc 1865 Query: 481 tcggtctcaccggaa 495 ||||||||||||||| Sbjct: 1864 tcggtctcaccggaa 1850 >Eno-RD feature: mRNA loc=2L:complement(1726636..1728320,1729311..1729545, 1729719..1729897, 1730027..1730080);ID=FBan0017654;gene_id=FBgn0000579;gene _sym=Eno;sym=CG17654;scaffold=AE003585;len=2153 Length = 2153 Score = 981 bits (495), Expect = 0.0 Identities = 495/495 (100%) Strand = Plus / Minus Query: 1 atattcaaagctctcggcaactgaacgaatatcttgcacatagtgttttttattcttttg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2094 atattcaaagctctcggcaactgaacgaatatcttgcacatagtgttttttattcttttg 2035 Query: 61 tttataaataatgattagatcaaggtttagcattaattaataatgtctaagaacgaagca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2034 tttataaataatgattagatcaaggtttagcattaattaataatgtctaagaacgaagca 1975 Query: 121 tagagacagcaaatgggtttggtagtttaattctgatgtatttgtgcgccagacacaagt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1974 tagagacagcaaatgggtttggtagtttaattctgatgtatttgtgcgccagacacaagt 1915 Query: 181 tccgaacgtaaaaggttgacgaacacgtgcaccgccgcctttccatggatctactgcgtc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1914 tccgaacgtaaaaggttgacgaacacgtgcaccgccgcctttccatggatctactgcgtc 1855 Query: 241 cagctccctctccaagatccagatctcattcgatggggctggtgtggttggaatttcgaa 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1854 cagctccctctccaagatccagatctcattcgatggggctggtgtggttggaatttcgaa 1795 Query: 301 gtgccctgcgcttactgcggcttcctgaacgacttgccggcgaacttgacgccagcgccg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1794 gtgccctgcgcttactgcggcttcctgaacgacttgccggcgaacttgacgccagcgccg 1735 Query: 361 atctcctcctcgatgcgcaggatctggttgtacttggccagacgctccgagcggcatgga 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1734 atctcctcctcgatgcgcaggatctggttgtacttggccagacgctccgagcggcatgga 1675 Query: 421 gctccggtcttgatctggccggtggacagaccgacgaccaggtcaccgatgaacgagtcc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1674 gctccggtcttgatctggccggtggacagaccgacgaccaggtcaccgatgaacgagtcc 1615 Query: 481 tcggtctcaccggaa 495 ||||||||||||||| Sbjct: 1614 tcggtctcaccggaa 1600 >Eno-RC feature: mRNA loc=2L:complement(1726636..1728320,1729311..1729545, 1729719..1729897, 1729968..1730124);ID=FBan0017654;gene_id=FBgn0000579;gene _sym=Eno;sym=CG17654;scaffold=AE003585;len=2256 Length = 2256 Score = 981 bits (495), Expect = 0.0 Identities = 495/495 (100%) Strand = Plus / Minus Query: 1 atattcaaagctctcggcaactgaacgaatatcttgcacatagtgttttttattcttttg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2197 atattcaaagctctcggcaactgaacgaatatcttgcacatagtgttttttattcttttg 2138 Query: 61 tttataaataatgattagatcaaggtttagcattaattaataatgtctaagaacgaagca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2137 tttataaataatgattagatcaaggtttagcattaattaataatgtctaagaacgaagca 2078 Query: 121 tagagacagcaaatgggtttggtagtttaattctgatgtatttgtgcgccagacacaagt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2077 tagagacagcaaatgggtttggtagtttaattctgatgtatttgtgcgccagacacaagt 2018 Query: 181 tccgaacgtaaaaggttgacgaacacgtgcaccgccgcctttccatggatctactgcgtc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2017 tccgaacgtaaaaggttgacgaacacgtgcaccgccgcctttccatggatctactgcgtc 1958 Query: 241 cagctccctctccaagatccagatctcattcgatggggctggtgtggttggaatttcgaa 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1957 cagctccctctccaagatccagatctcattcgatggggctggtgtggttggaatttcgaa 1898 Query: 301 gtgccctgcgcttactgcggcttcctgaacgacttgccggcgaacttgacgccagcgccg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1897 gtgccctgcgcttactgcggcttcctgaacgacttgccggcgaacttgacgccagcgccg 1838 Query: 361 atctcctcctcgatgcgcaggatctggttgtacttggccagacgctccgagcggcatgga 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1837 atctcctcctcgatgcgcaggatctggttgtacttggccagacgctccgagcggcatgga 1778 Query: 421 gctccggtcttgatctggccggtggacagaccgacgaccaggtcaccgatgaacgagtcc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1777 gctccggtcttgatctggccggtggacagaccgacgaccaggtcaccgatgaacgagtcc 1718 Query: 481 tcggtctcaccggaa 495 ||||||||||||||| Sbjct: 1717 tcggtctcaccggaa 1703 >Eno-RB feature: mRNA loc=2L:complement(1726636..1728320,1729311..1729545, 1729719..1729897, 1731215..1731294);ID=FBan0017654;gene_id=FBgn0000579;gene _sym=Eno;sym=CG17654;scaffold=AE003585;len=2179 Length = 2179 Score = 981 bits (495), Expect = 0.0 Identities = 495/495 (100%) Strand = Plus / Minus Query: 1 atattcaaagctctcggcaactgaacgaatatcttgcacatagtgttttttattcttttg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2120 atattcaaagctctcggcaactgaacgaatatcttgcacatagtgttttttattcttttg 2061 Query: 61 tttataaataatgattagatcaaggtttagcattaattaataatgtctaagaacgaagca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2060 tttataaataatgattagatcaaggtttagcattaattaataatgtctaagaacgaagca 2001 Query: 121 tagagacagcaaatgggtttggtagtttaattctgatgtatttgtgcgccagacacaagt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2000 tagagacagcaaatgggtttggtagtttaattctgatgtatttgtgcgccagacacaagt 1941 Query: 181 tccgaacgtaaaaggttgacgaacacgtgcaccgccgcctttccatggatctactgcgtc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1940 tccgaacgtaaaaggttgacgaacacgtgcaccgccgcctttccatggatctactgcgtc 1881 Query: 241 cagctccctctccaagatccagatctcattcgatggggctggtgtggttggaatttcgaa 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1880 cagctccctctccaagatccagatctcattcgatggggctggtgtggttggaatttcgaa 1821 Query: 301 gtgccctgcgcttactgcggcttcctgaacgacttgccggcgaacttgacgccagcgccg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1820 gtgccctgcgcttactgcggcttcctgaacgacttgccggcgaacttgacgccagcgccg 1761 Query: 361 atctcctcctcgatgcgcaggatctggttgtacttggccagacgctccgagcggcatgga 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1760 atctcctcctcgatgcgcaggatctggttgtacttggccagacgctccgagcggcatgga 1701 Query: 421 gctccggtcttgatctggccggtggacagaccgacgaccaggtcaccgatgaacgagtcc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1700 gctccggtcttgatctggccggtggacagaccgacgaccaggtcaccgatgaacgagtcc 1641 Query: 481 tcggtctcaccggaa 495 ||||||||||||||| Sbjct: 1640 tcggtctcaccggaa 1626 >Eno-RA feature: mRNA loc=2L:complement(1726636..1728320, 1729311..1729378);ID=FBan0017654;gene_id=FBgn0000579;gene _sym=Eno;sym=CG17654;scaffold=AE003585;len=1753 Length = 1753 Score = 981 bits (495), Expect = 0.0 Identities = 495/495 (100%) Strand = Plus / Minus Query: 1 atattcaaagctctcggcaactgaacgaatatcttgcacatagtgttttttattcttttg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1694 atattcaaagctctcggcaactgaacgaatatcttgcacatagtgttttttattcttttg 1635 Query: 61 tttataaataatgattagatcaaggtttagcattaattaataatgtctaagaacgaagca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1634 tttataaataatgattagatcaaggtttagcattaattaataatgtctaagaacgaagca 1575 Query: 121 tagagacagcaaatgggtttggtagtttaattctgatgtatttgtgcgccagacacaagt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1574 tagagacagcaaatgggtttggtagtttaattctgatgtatttgtgcgccagacacaagt 1515 Query: 181 tccgaacgtaaaaggttgacgaacacgtgcaccgccgcctttccatggatctactgcgtc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1514 tccgaacgtaaaaggttgacgaacacgtgcaccgccgcctttccatggatctactgcgtc 1455 Query: 241 cagctccctctccaagatccagatctcattcgatggggctggtgtggttggaatttcgaa 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1454 cagctccctctccaagatccagatctcattcgatggggctggtgtggttggaatttcgaa 1395 Query: 301 gtgccctgcgcttactgcggcttcctgaacgacttgccggcgaacttgacgccagcgccg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1394 gtgccctgcgcttactgcggcttcctgaacgacttgccggcgaacttgacgccagcgccg 1335 Query: 361 atctcctcctcgatgcgcaggatctggttgtacttggccagacgctccgagcggcatgga 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1334 atctcctcctcgatgcgcaggatctggttgtacttggccagacgctccgagcggcatgga 1275 Query: 421 gctccggtcttgatctggccggtggacagaccgacgaccaggtcaccgatgaacgagtcc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1274 gctccggtcttgatctggccggtggacagaccgacgaccaggtcaccgatgaacgagtcc 1215 Query: 481 tcggtctcaccggaa 495 ||||||||||||||| Sbjct: 1214 tcggtctcaccggaa 1200 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,817 Number of Sequences: 18737 Number of extensions: 12817 Number of successful extensions: 318 Number of sequences better than 1.0e-100: 5 Number of HSP's better than 0.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 313 Number of HSP's gapped (non-prelim): 5 length of query: 495 length of database: 41,270,998 effective HSP length: 17 effective length of query: 478 effective length of database: 40,952,469 effective search space: 19575280182 effective search space used: 19575280182 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA951509|AA951509 LD32004.3prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD32004 3prime similar to M14131: D.melanogaster nonhistone chromosomal protein C1A9 antigen mRNA, complete cds, mRNA sequence. (686 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Su(var)205-RA feature: mRNA loc=2L:complement(8201871..8202334,8... 1346 0.0 Su(var)205-RB feature: mRNA loc=2L:complement(8201857..8202334,8... 1152 0.0 >Su(var)205-RA feature: mRNA loc=2L:complement(8201871..8202334,8202584..8202704, 8202781..8202897,8202961..8203092, 8203210..8203364);ID=FBan0008409;gene_id=FBgn0003607;gen e_sym=Su(var)205;sym=CG8409;scaffold=AE003620;len=989 Length = 989 Score = 1346 bits (679), Expect = 0.0 Identities = 686/687 (99%), Gaps = 1/687 (0%) Strand = Plus / Plus Query: 1 gcagatttttcattttgtggaaagtcttctagcgccaacacacaggcttataaaaaccaa 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 56 gcagatttttcattttgtggaaagtcttctagcgccaacacacaggcttataaaaaccaa 115 Query: 61 tttagctgcgtgcataaagtgtagatcttatttaatctagtattttaataaaaacaaaat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 116 tttagctgcgtgcataaagtgtagatcttatttaatctagtattttaataaaaacaaaat 175 Query: 121 gggcaagaaaatcgacaaccctgagagctcggcaaaggtttccgatgccgaagaggagga 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 176 gggcaagaaaatcgacaaccctgagagctcggcaaaggtttccgatgccgaagaggagga 235 Query: 181 ggaggagtacgccgtggaaaagatcatcgacaggcgggtgcgcaagggaaaggtggagta 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 236 ggaggagtacgccgtggaaaagatcatcgacaggcgggtgcgcaagggaaaggtggagta 295 Query: 241 ctatctgaaatggaagggctatcccgaaactgagaacacgtgggagccggagaacaatct 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 296 ctatctgaaatggaagggctatcccgaaactgagaacacgtgggagccggagaacaatct 355 Query: 301 cgactgccaggatcttatccagcagtacgaggcgagccgcaaggatgaggagaagtcagc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 356 cgactgccaggatcttatccagcagtacgaggcgagccgcaaggatgaggagaagtcagc 415 Query: 361 cgcctccaagaaggatcgacccagcagcagcgccaaggccaaggaaactcaaggacgcgc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 416 cgcctccaagaaggatcgacccagcagcagcgccaaggccaaggaaactcaaggacgcgc 475 Query: 421 cagcagttcgacgtccacagcaagcaagcgaaagtccgaagaaccaacagcgccctctgg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 476 cagcagttcgacgtccacagcaagcaagcgaaagtccgaagaaccaacagcgccctctgg 535 Query: 481 caataaatcaaaacgtaccacagatgcggagcaggacaccattcccgtttcaggatctac 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 536 caataaatcaaaacgtaccacagatgcggagcaggacaccattcccgtttcaggatctac 595 Query: 541 cggattcgatcgcggcctggagg-cgaaaagatcttgggtgcctccgacaataatggccg 599 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 596 cggattcgatcgcggcctggaggccgaaaagatcttgggtgcctccgacaataatggccg 655 Query: 600 cctgacattcctcattcagttcaaaggcgtggaccaagcagaaatggtgccctcctcagt 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 656 cctgacattcctcattcagttcaaaggcgtggaccaagcagaaatggtgccctcctcagt 715 Query: 660 ggccaatgaaaaaatcccacgaatggt 686 ||||||||||||||||||||||||||| Sbjct: 716 ggccaatgaaaaaatcccacgaatggt 742 >Su(var)205-RB feature: mRNA loc=2L:complement(8201857..8202334,8202584..8202704, 8202781..8202897, 8202961..8203151);ID=FBan0008409;gene_id=FBgn0003607;gen e_sym=Su(var)205;sym=CG8409;scaffold=AE003620;len=907 Length = 907 Score = 1152 bits (581), Expect = 0.0 Identities = 588/589 (99%), Gaps = 1/589 (0%) Strand = Plus / Plus Query: 99 agtattttaataaaaacaaaatgggcaagaaaatcgacaaccctgagagctcggcaaagg 158 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 58 agtattttaataaaaacaaaatgggcaagaaaatcgacaaccctgagagctcggcaaagg 117 Query: 159 tttccgatgccgaagaggaggaggaggagtacgccgtggaaaagatcatcgacaggcggg 218 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 118 tttccgatgccgaagaggaggaggaggagtacgccgtggaaaagatcatcgacaggcggg 177 Query: 219 tgcgcaagggaaaggtggagtactatctgaaatggaagggctatcccgaaactgagaaca 278 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 178 tgcgcaagggaaaggtggagtactatctgaaatggaagggctatcccgaaactgagaaca 237 Query: 279 cgtgggagccggagaacaatctcgactgccaggatcttatccagcagtacgaggcgagcc 338 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 238 cgtgggagccggagaacaatctcgactgccaggatcttatccagcagtacgaggcgagcc 297 Query: 339 gcaaggatgaggagaagtcagccgcctccaagaaggatcgacccagcagcagcgccaagg 398 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 298 gcaaggatgaggagaagtcagccgcctccaagaaggatcgacccagcagcagcgccaagg 357 Query: 399 ccaaggaaactcaaggacgcgccagcagttcgacgtccacagcaagcaagcgaaagtccg 458 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 358 ccaaggaaactcaaggacgcgccagcagttcgacgtccacagcaagcaagcgaaagtccg 417 Query: 459 aagaaccaacagcgccctctggcaataaatcaaaacgtaccacagatgcggagcaggaca 518 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 418 aagaaccaacagcgccctctggcaataaatcaaaacgtaccacagatgcggagcaggaca 477 Query: 519 ccattcccgtttcaggatctaccggattcgatcgcggcctggagg-cgaaaagatcttgg 577 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 478 ccattcccgtttcaggatctaccggattcgatcgcggcctggaggccgaaaagatcttgg 537 Query: 578 gtgcctccgacaataatggccgcctgacattcctcattcagttcaaaggcgtggaccaag 637 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 538 gtgcctccgacaataatggccgcctgacattcctcattcagttcaaaggcgtggaccaag 597 Query: 638 cagaaatggtgccctcctcagtggccaatgaaaaaatcccacgaatggt 686 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 598 cagaaatggtgccctcctcagtggccaatgaaaaaatcccacgaatggt 646 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 26,317 Number of Sequences: 18737 Number of extensions: 26317 Number of successful extensions: 1430 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1426 Number of HSP's gapped (non-prelim): 2 length of query: 686 length of database: 41,270,998 effective HSP length: 17 effective length of query: 669 effective length of database: 40,952,469 effective search space: 27397201761 effective search space used: 27397201761 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA951672|AA951672 LD32330.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD32330 5prime, mRNA sequence. (491 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG10657-RA feature: mRNA loc=3L:complement(12449372..12449944,12... 942 0.0 >CG10657-RA feature: mRNA loc=3L:complement(12449372..12449944,12450008..12450298, 12450364..12450821, 12454557..12454745);ID=FBan0010657;gene_id=FBgn0036289;g ene_sym=CG10657;sym=CG10657;scaffold=AE003541;len=1511 Length = 1511 Score = 942 bits (475), Expect = 0.0 Identities = 489/491 (99%), Gaps = 2/491 (0%) Strand = Plus / Plus Query: 1 cgtgcccacgttcacatcgtcgccagttcagttgcggaactcatacacggatatatatac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 cgtgcccacgttcacatcgtcgccagttcagttgcggaactcatacacggatatatatac 60 Query: 61 acatatattccggcgatcaattagagccccggaattcagccacatccctcccctgcgacg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 acatatattccggcgatcaattagagccccggaattcagccacatccctcccctgcgacg 120 Query: 121 cgtccaaatattgttatataagtttaacaacttgtgaaatccacgcagtgccagtgcgta 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 cgtccaaatattgttatataagtttaacaacttgtgaaatccacgcagtgccagtgcgta 180 Query: 181 agaccaaaatgcttgagaccgaggtgctgcaacaaccgaagctgagtggaccggctgcca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 agaccaaaatgcttgagaccgaggtgctgcaacaaccgaagctgagtggaccggctgcca 240 Query: 241 gtagcggcggcgactatgactatccgtatgtctgcggactgagtccggcaatgaagctgg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 gtagcggcggcgactatgactatccgtatgtctgcggactgagtccggcaatgaagctgg 300 Query: 301 tggccaaggaggagctgcacgaggacgagaacatacgtcggcaggcgctggcccagttcc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 tggccaaggaggagctgcacgaggacgagaacatacgtcggcaggcgctggcccagttcc 360 Query: 361 gcgagtggatcgagaagcatccgcatatccgcaagtgccgcaccgataccgtcttcctgc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 gcgagtggatcgagaagcatccgcatatccgcaagtgccgcaccgataccgtcttcctgc 420 Query: 421 tgcgttttttgcgcaccaaaaagttctccgtaccatccggcctgcgaaaatgctcgagcg 480 |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct: 421 tgcgttttttgcgcaccaaaaagttctccgtaccatcc-gcctgcg-aaatgctcgagcg 478 Query: 481 ctatctgacca 491 ||||||||||| Sbjct: 479 ctatctgacca 489 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,849 Number of Sequences: 18737 Number of extensions: 14849 Number of successful extensions: 587 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 585 Number of HSP's gapped (non-prelim): 1 length of query: 491 length of database: 41,270,998 effective HSP length: 17 effective length of query: 474 effective length of database: 40,952,469 effective search space: 19411470306 effective search space used: 19411470306 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA951786|AA951786 LD32507.3prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD32507 3prime similar to M14643: &agr ;Tub84B FBgn0003884 PID:g158731 SWISS-PROT:P06603, mRNA sequence. (746 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value alphaTub84B-RA feature: mRNA loc=3R:join(2912261..2912467,291295... 1477 0.0 alphaTub84D-RB feature: mRNA loc=3R:join(3356396..3356728,335693... 676 0.0 alphaTub84D-RA feature: mRNA loc=3R:3356396..3358892;ID=FBan0002... 676 0.0 alphaTub85E-RA feature: mRNA loc=3R:complement(5556954..5557888,... 551 e-156 >alphaTub84B-RA feature: mRNA loc=3R:join(2912261..2912467, 2912957..2914583);ID=FBan0001913;gene_id=FBgn0003884;gene _sym=alphaTub84B;sym=CG1913;scaffold=AE003672;len=1834 Length = 1834 Score = 1477 bits (745), Expect = 0.0 Identities = 745/745 (100%) Strand = Plus / Minus Query: 2 tcttatttctgacaacactgaatctggccgattttattcttgtgtacacaacttatcgcc 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1814 tcttatttctgacaacactgaatctggccgattttattcttgtgtacacaacttatcgcc 1755 Query: 62 gagttaacttggcttttctgctatacgtgtctttgtggataaaatactttatggtttctc 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1754 gagttaacttggcttttctgctatacgtgtctttgtggataaaatactttatggtttctc 1695 Query: 122 gtacaatcttcatcgttttcgtatgcttttcagtgttgcagtgaattttttgttgcgatt 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1694 gtacaatcttcatcgttttcgtatgcttttcagtgttgcagtgaattttttgttgcgatt 1635 Query: 182 ggaagcgtaaacactgatttcgacggttaccccgcccaccaatgacgctcccatcgagcg 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1634 ggaagcgtaaacactgatttcgacggttaccccgcccaccaatgacgctcccatcgagcg 1575 Query: 242 ttgaagtggcgtgacgcttagtactcctcagcgccctcaccctcgccgtcaccggagtcc 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1574 ttgaagtggcgtgacgcttagtactcctcagcgccctcaccctcgccgtcaccggagtcc 1515 Query: 302 atgccgacctcctcgtagtccttctcgagggcagccaaatcctcacgggcctcggagaac 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1514 atgccgacctcctcgtagtccttctcgagggcagccaaatcctcacgggcctcggagaac 1455 Query: 362 tctccctcctccataccctcaccaacgtaccagtggacgaaggcacgcttggcgtacatc 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1454 tctccctcctccataccctcaccaacgtaccagtggacgaaggcacgcttggcgtacatc 1395 Query: 422 agatcgaacttgtggtccagacgggcccaggcctcggcgatggccgtggtgttggacaac 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1394 agatcgaacttgtggtccagacgggcccaggcctcggcgatggccgtggtgttggacaac 1335 Query: 482 atgcacacggcacgctgcaccttggccaaatcacctccaggcaccacggtgggtggctgg 541 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1334 atgcacacggcacgctgcaccttggccaaatcacctccaggcaccacggtgggtggctgg 1275 Query: 542 tagttgatgccaaccttgaagccagtggggcaccagtcgacgaattgaatggtgcgcttg 601 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1274 tagttgatgccaaccttgaagccagtggggcaccagtcgacgaattgaatggtgcgcttg 1215 Query: 602 gtcttgatggtggcaatagcggcgttgacgtccttgggcacaacatcaccgcggtacagc 661 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1214 gtcttgatggtggcaatagcggcgttgacgtccttgggcacaacatcaccgcggtacagc 1155 Query: 662 atgcagcaggccatgtacttgccgtgacggggatcgcacttgaccatctggttggccggc 721 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1154 atgcagcaggccatgtacttgccgtgacggggatcgcacttgaccatctggttggccggc 1095 Query: 722 tcgaagcaggcgttggtgatctcag 746 ||||||||||||||||||||||||| Sbjct: 1094 tcgaagcaggcgttggtgatctcag 1070 >alphaTub84D-RB feature: mRNA loc=3R:join(3356396..3356728, 3356935..3358892);ID=FBan0002512;gene_id=FBgn0003885;gene _sym=alphaTub84D;sym=CG2512;scaffold=AE003671;len=2291 Length = 2291 Score = 676 bits (341), Expect = 0.0 Identities = 449/485 (92%) Strand = Plus / Minus Query: 260 tagtactcctcagcgccctcaccctcgccgtcaccggagtccatgccgacctcctcgtag 319 |||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||| Sbjct: 1750 tagtactcctcagcaccctcgccctcaccgtcaccggaatccatgccgacctcctcgtag 1691 Query: 320 tccttctcgagggcagccaaatcctcacgggcctcggagaactctccctcctccataccc 379 ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||| Sbjct: 1690 tccttctcgagggcagccagatcctcacgggcctcggagaactcgccctcctccatgccc 1631 Query: 380 tcaccaacgtaccagtggacgaaggcacgcttggcgtacatcagatcgaacttgtggtcc 439 |||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct: 1630 tcaccaacataccagtggacgaaggccctcttggcgtacatcagatcgaacttgtggtcc 1571 Query: 440 agacgggcccaggcctcggcgatggccgtggtgttggacaacatgcacacggcacgctgc 499 |||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||| Sbjct: 1570 agacgggcccaggcctcggcaatagccgtggtattggacaacatgcacacggcacgctgc 1511 Query: 500 accttggccaaatcacctccaggcaccacggtgggtggctggtagttgatgccaaccttg 559 |||||||||| ||| || || || || || ||||||||||||||||||||||| |||||| Sbjct: 1510 accttggccagatccccgcctgggacgacagtgggtggctggtagttgatgcccaccttg 1451 Query: 560 aagccagtggggcaccagtcgacgaattgaatggtgcgcttggtcttgatggtggcaata 619 ||||| |||||||||||||| ||||| |||||||| ||||| |||||||||||||| || Sbjct: 1450 aagccggtggggcaccagtccacgaactgaatggtacgctttgtcttgatggtggcgatg 1391 Query: 620 gcggcgttgacgtccttgggcacaacatcaccgcggtacagcatgcagcaggccatgtac 679 |||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||| Sbjct: 1390 gcggcgttcacgtccttgggcaccacatcgccgcgatacagcatgcagcaggccatgtac 1331 Query: 680 ttgccgtgacggggatcgcacttgaccatctggttggccggctcgaagcaggcgttggtg 739 ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct: 1330 ttgccgtgacggggatccaccttgaccatctggttggctggctcgaagcaggcgttggtg 1271 Query: 740 atctc 744 ||||| Sbjct: 1270 atctc 1266 >alphaTub84D-RA feature: mRNA loc=3R:3356396..3358892;ID=FBan0002512;gene_id=FBgn000388 5;gene_sym=alphaTub84D;sym=CG2512;scaffold=AE003671;len=2 497 Length = 2497 Score = 676 bits (341), Expect = 0.0 Identities = 449/485 (92%) Strand = Plus / Minus Query: 260 tagtactcctcagcgccctcaccctcgccgtcaccggagtccatgccgacctcctcgtag 319 |||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||| Sbjct: 1956 tagtactcctcagcaccctcgccctcaccgtcaccggaatccatgccgacctcctcgtag 1897 Query: 320 tccttctcgagggcagccaaatcctcacgggcctcggagaactctccctcctccataccc 379 ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||| Sbjct: 1896 tccttctcgagggcagccagatcctcacgggcctcggagaactcgccctcctccatgccc 1837 Query: 380 tcaccaacgtaccagtggacgaaggcacgcttggcgtacatcagatcgaacttgtggtcc 439 |||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||| Sbjct: 1836 tcaccaacataccagtggacgaaggccctcttggcgtacatcagatcgaacttgtggtcc 1777 Query: 440 agacgggcccaggcctcggcgatggccgtggtgttggacaacatgcacacggcacgctgc 499 |||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||| Sbjct: 1776 agacgggcccaggcctcggcaatagccgtggtattggacaacatgcacacggcacgctgc 1717 Query: 500 accttggccaaatcacctccaggcaccacggtgggtggctggtagttgatgccaaccttg 559 |||||||||| ||| || || || || || ||||||||||||||||||||||| |||||| Sbjct: 1716 accttggccagatccccgcctgggacgacagtgggtggctggtagttgatgcccaccttg 1657 Query: 560 aagccagtggggcaccagtcgacgaattgaatggtgcgcttggtcttgatggtggcaata 619 ||||| |||||||||||||| ||||| |||||||| ||||| |||||||||||||| || Sbjct: 1656 aagccggtggggcaccagtccacgaactgaatggtacgctttgtcttgatggtggcgatg 1597 Query: 620 gcggcgttgacgtccttgggcacaacatcaccgcggtacagcatgcagcaggccatgtac 679 |||||||| |||||||||||||| ||||| ||||| |||||||||||||||||||||||| Sbjct: 1596 gcggcgttcacgtccttgggcaccacatcgccgcgatacagcatgcagcaggccatgtac 1537 Query: 680 ttgccgtgacggggatcgcacttgaccatctggttggccggctcgaagcaggcgttggtg 739 ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct: 1536 ttgccgtgacggggatccaccttgaccatctggttggctggctcgaagcaggcgttggtg 1477 Query: 740 atctc 744 ||||| Sbjct: 1476 atctc 1472 >alphaTub85E-RA feature: mRNA loc=3R:complement(5556954..5557888,5558017..5558541, 5558884..5558986);ID=FBan0009476;gene_id=FBgn0003886;gene _sym=alphaTub85E;sym=CG9476;scaffold=AE003684;len=1563 Length = 1563 Score = 551 bits (278), Expect = e-156 Identities = 407/450 (90%) Strand = Plus / Minus Query: 295 ggagtccatgccgacctcctcgtagtccttctcgagggcagccaaatcctcacgggcctc 354 |||||| ||||| ||||||||||||||||||||||||||||| | |||||| || ||||| Sbjct: 1417 ggagtcgatgcctacctcctcgtagtccttctcgagggcagcgagatcctcgcgagcctc 1358 Query: 355 ggagaactctccctcctccataccctcaccaacgtaccagtggacgaaggcacgcttggc 414 || |||||| ||||||||||| |||||||| |||||||||||||||||||| | |||||| Sbjct: 1357 ggcgaactcgccctcctccatgccctcacccacgtaccagtggacgaaggccctcttggc 1298 Query: 415 gtacatcagatcgaacttgtggtccagacgggcccaggcctcggcgatggccgtggtgtt 474 ||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||| || Sbjct: 1297 gtacatcagatcgaacttgtgatccagacgggcccaggcctcggcaatggcagtggtatt 1238 Query: 475 ggacaacatgcacacggcacgctgcaccttggccaaatcacctccaggcaccacggtggg 534 ||||| |||||| ||||| |||||||||||||||| ||| || ||||| || |||||||| Sbjct: 1237 ggacagcatgcagacggcgcgctgcaccttggccagatctccgccaggaacaacggtggg 1178 Query: 535 tggctggtagttgatgccaaccttgaagccagtggggcaccagtcgacgaattgaatggt 594 |||||| ||||||||||| ||||||||||| ||||| |||||||||||||| || || | Sbjct: 1177 tggctgatagttgatgcccaccttgaagcccgtgggacaccagtcgacgaactggataga 1118 Query: 595 gcgcttggtcttgatggtggcaatagcggcgttgacgtccttgggcacaacatcaccgcg 654 |||||||||||||||||||||||| || ||||| || ||||||||||| ||||||||||| Sbjct: 1117 gcgcttggtcttgatggtggcaatggctgcgttcacatccttgggcaccacatcaccgcg 1058 Query: 655 gtacagcatgcagcaggccatgtacttgccgtgacggggatcgcacttgaccatctggtt 714 ||| |||||||||||||||||||||||||| |||| ||||| ||||||||||||||||| Sbjct: 1057 gtagagcatgcagcaggccatgtacttgccacgacgcggatcacacttgaccatctggtt 998 Query: 715 ggccggctcgaagcaggcgttggtgatctc 744 |||||||||||||||||| ||||||||||| Sbjct: 997 ggccggctcgaagcaggcattggtgatctc 968 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 17,037 Number of Sequences: 18737 Number of extensions: 17037 Number of successful extensions: 386 Number of sequences better than 1.0e-100: 4 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 382 Number of HSP's gapped (non-prelim): 4 length of query: 746 length of database: 41,270,998 effective HSP length: 17 effective length of query: 729 effective length of database: 40,952,469 effective search space: 29854349901 effective search space used: 29854349901 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA952080|AA952080 LD29127.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD29127 5prime, mRNA sequence. (559 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG7414-RA feature: mRNA loc=3L:join(21742097..21742355,21742528.... 1084 0.0 >CG7414-RA feature: mRNA loc=3L:join(21742097..21742355,21742528..21743692, 21743753..21744030, 21744372..21745136);ID=FBan0007414;gene_id=FBgn0037135;ge ne_sym=CG7414;sym=CG7414;scaffold=AE003595;len=2467 Length = 2467 Score = 1084 bits (547), Expect = 0.0 Identities = 547/547 (100%) Strand = Plus / Minus Query: 13 gggagcagtaatccgcagattttggtggaaacatctttattacttggtagcacaatttgg 72 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2465 gggagcagtaatccgcagattttggtggaaacatctttattacttggtagcacaatttgg 2406 Query: 73 tacataaatttgttgtttacgggagttactgtacgttttgccgaaattagttgggaaatc 132 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2405 tacataaatttgttgtttacgggagttactgtacgttttgccgaaattagttgggaaatc 2346 Query: 133 acaatagtagaaaaatgttttaacttgaaacttatgcggcaaatgggccacaaactgagc 192 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2345 acaatagtagaaaaatgttttaacttgaaacttatgcggcaaatgggccacaaactgagc 2286 Query: 193 gtaaaacagcaggaaggggacgaacaggaggtgagtagagtggagtggagctgagaagag 252 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2285 gtaaaacagcaggaaggggacgaacaggaggtgagtagagtggagtggagctgagaagag 2226 Query: 253 gtgctgtatcacaatcacaagagcaattactcctcgcatccctcagccttctcgccgccg 312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2225 gtgctgtatcacaatcacaagagcaattactcctcgcatccctcagccttctcgccgccg 2166 Query: 313 tcgtcatcgtcaacgccattaacgtcctcctaggcagactgcttgagagccttgagctca 372 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2165 tcgtcatcgtcaacgccattaacgtcctcctaggcagactgcttgagagccttgagctca 2106 Query: 373 tccaggtactgtgcttccatcttaatcttgttcagttggttcagctccagattctcgccc 432 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2105 tccaggtactgtgcttccatcttaatcttgttcagttggttcagctccagattctcgccc 2046 Query: 433 tggctgcgtcggaccttcagcttcttaatgtccgacagcttcttggcgacgctgcgaatc 492 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2045 tggctgcgtcggaccttcagcttcttaatgtccgacagcttcttggcgacgctgcgaatc 1986 Query: 493 ttgcgctccttatcgctgatgtgctggccattgggatgaccctgtccatacgaattcggt 552 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1985 ttgcgctccttatcgctgatgtgctggccattgggatgaccctgtccatacgaattcggt 1926 Query: 553 ggctgat 559 ||||||| Sbjct: 1925 ggctgat 1919 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,701 Number of Sequences: 18737 Number of extensions: 13701 Number of successful extensions: 324 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 323 Number of HSP's gapped (non-prelim): 1 length of query: 559 length of database: 41,270,998 effective HSP length: 17 effective length of query: 542 effective length of database: 40,952,469 effective search space: 22196238198 effective search space used: 22196238198 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA952232|AA952232 LD29336.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD29336 5prime, mRNA sequence. (406 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG8326-RA feature: mRNA loc=X:complement(17359123..17360230,1736... 791 0.0 >CG8326-RA feature: mRNA loc=X:complement(17359123..17360230, 17360300..17360435);ID=FBan0008326;gene_id=FBgn0030851;g ene_sym=CG8326;sym=CG8326;scaffold=AE003506;len=1244 Length = 1244 Score = 791 bits (399), Expect = 0.0 Identities = 406/407 (99%), Gaps = 1/407 (0%) Strand = Plus / Plus Query: 1 ataccacgagtttgttttacaaaaattgaaccaaaacccaaaataaatggctcggaaacg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8 ataccacgagtttgttttacaaaaattgaaccaaaacccaaaataaatggctcggaaacg 67 Query: 61 aaagattcccgtgcgcaag-accacggcgtccgtgatcccctcaagcagctggaacagaa 119 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 68 aaagattcccgtgcgcaagcaccacggcgtccgtgatcccctcaagcagctggaacagaa 127 Query: 120 ggagaagaaactttccaaagtaacgaacaatccgcctgtgaaaaaggatgagcagcaggt 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 128 ggagaagaaactttccaaagtaacgaacaatccgcctgtgaaaaaggatgagcagcaggt 187 Query: 180 gtcctttaagttccgtcagtttcagcagcttgccaacgccaccaaatcgggcaagaagct 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 188 gtcctttaagttccgtcagtttcagcagcttgccaacgccaccaaatcgggcaagaagct 247 Query: 240 aagattgggcgaaattggacgggaggataagcccaaatcctctccaggatccaagcctgg 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 248 aagattgggcgaaattggacgggaggataagcccaaatcctctccaggatccaagcctgg 307 Query: 300 cagtagttcctcctcaaaggaaacgcgtaacatcaagcagttcgccaacgaaacggacga 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 308 cagtagttcctcctcaaaggaaacgcgtaacatcaagcagttcgccaacgaaacggacga 367 Query: 360 ggattatctgcgccgagtgaatcgcatgaccaatgcatccgtacggg 406 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 368 ggattatctgcgccgagtgaatcgcatgaccaatgcatccgtacggg 414 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,835 Number of Sequences: 18737 Number of extensions: 11835 Number of successful extensions: 1008 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1006 Number of HSP's gapped (non-prelim): 1 length of query: 406 length of database: 41,270,998 effective HSP length: 17 effective length of query: 389 effective length of database: 40,952,469 effective search space: 15930510441 effective search space used: 15930510441 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA978883|AA978883 LD33067.3prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD33067 3prime, mRNA sequence. (577 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG30497-RC feature: mRNA loc=2R:complement(2798651..2802821,2802... 1144 0.0 CG30497-RB feature: mRNA loc=2R:complement(2798651..2802821,2818... 1144 0.0 CG30497-RA feature: mRNA loc=2R:complement(2798651..2802821,2839... 1144 0.0 >CG30497-RC feature: mRNA loc=2R:complement(2798651..2802821, 2802909..2803079);ID=FBan0030497;gene_id=FBgn0050497;gene _sym=CG30497;sym=CG30497;scaffold=AE003840;len=4342 Length = 4342 Score = 1144 bits (577), Expect = 0.0 Identities = 577/577 (100%) Strand = Plus / Minus Query: 1 agactttcaataggttttacaaagtaaaatttagttttcgtaggcaaagaaagttacaca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2978 agactttcaataggttttacaaagtaaaatttagttttcgtaggcaaagaaagttacaca 2919 Query: 61 aataacgtaaatgttgtgcatatggtgtaaaaggattttcatatagccaaactagtgatg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2918 aataacgtaaatgttgtgcatatggtgtaaaaggattttcatatagccaaactagtgatg 2859 Query: 121 tgatacgcaatcgttttcgtcctttttgtgtgtcagtgatttaggtggtgtccctgttca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2858 tgatacgcaatcgttttcgtcctttttgtgtgtcagtgatttaggtggtgtccctgttca 2799 Query: 181 acatctaacagcggctgaagttcagtctgcggttcaaactctcgggatagttacattatt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2798 acatctaacagcggctgaagttcagtctgcggttcaaactctcgggatagttacattatt 2739 Query: 241 aaagtaggagcgcgtgtgtgccaagtgtcgtggaaaggctttcaagtcgccggacacatt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2738 aaagtaggagcgcgtgtgtgccaagtgtcgtggaaaggctttcaagtcgccggacacatt 2679 Query: 301 caattagagatatagaaaaggaacagtgaaatagacctctgatcatacagttaacgaaga 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2678 caattagagatatagaaaaggaacagtgaaatagacctctgatcatacagttaacgaaga 2619 Query: 361 aagtagccaaccgaatatatgagtaatgatgaatcaacagtaatcgtaaagtgccaagtg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2618 aagtagccaaccgaatatatgagtaatgatgaatcaacagtaatcgtaaagtgccaagtg 2559 Query: 421 gcacggccaggccagcaagcatgaaccgtttcccacatcttcttctccacatcctagaca 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2558 gcacggccaggccagcaagcatgaaccgtttcccacatcttcttctccacatcctagaca 2499 Query: 481 aactggtgattatggtgctgatgctggtgctggtgctgctcctgttgttcggtaacattg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2498 aactggtgattatggtgctgatgctggtgctggtgctgctcctgttgttcggtaacattg 2439 Query: 541 aggtaggagtcctcgcccagcagaaacatactgggcg 577 ||||||||||||||||||||||||||||||||||||| Sbjct: 2438 aggtaggagtcctcgcccagcagaaacatactgggcg 2402 >CG30497-RB feature: mRNA loc=2R:complement(2798651..2802821, 2818936..2819617);ID=FBan0030497;gene_id=FBgn0050497;gene _sym=CG30497;sym=CG30497;scaffold=AE003840;len=4853 Length = 4853 Score = 1144 bits (577), Expect = 0.0 Identities = 577/577 (100%) Strand = Plus / Minus Query: 1 agactttcaataggttttacaaagtaaaatttagttttcgtaggcaaagaaagttacaca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3489 agactttcaataggttttacaaagtaaaatttagttttcgtaggcaaagaaagttacaca 3430 Query: 61 aataacgtaaatgttgtgcatatggtgtaaaaggattttcatatagccaaactagtgatg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3429 aataacgtaaatgttgtgcatatggtgtaaaaggattttcatatagccaaactagtgatg 3370 Query: 121 tgatacgcaatcgttttcgtcctttttgtgtgtcagtgatttaggtggtgtccctgttca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3369 tgatacgcaatcgttttcgtcctttttgtgtgtcagtgatttaggtggtgtccctgttca 3310 Query: 181 acatctaacagcggctgaagttcagtctgcggttcaaactctcgggatagttacattatt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3309 acatctaacagcggctgaagttcagtctgcggttcaaactctcgggatagttacattatt 3250 Query: 241 aaagtaggagcgcgtgtgtgccaagtgtcgtggaaaggctttcaagtcgccggacacatt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3249 aaagtaggagcgcgtgtgtgccaagtgtcgtggaaaggctttcaagtcgccggacacatt 3190 Query: 301 caattagagatatagaaaaggaacagtgaaatagacctctgatcatacagttaacgaaga 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3189 caattagagatatagaaaaggaacagtgaaatagacctctgatcatacagttaacgaaga 3130 Query: 361 aagtagccaaccgaatatatgagtaatgatgaatcaacagtaatcgtaaagtgccaagtg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3129 aagtagccaaccgaatatatgagtaatgatgaatcaacagtaatcgtaaagtgccaagtg 3070 Query: 421 gcacggccaggccagcaagcatgaaccgtttcccacatcttcttctccacatcctagaca 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3069 gcacggccaggccagcaagcatgaaccgtttcccacatcttcttctccacatcctagaca 3010 Query: 481 aactggtgattatggtgctgatgctggtgctggtgctgctcctgttgttcggtaacattg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3009 aactggtgattatggtgctgatgctggtgctggtgctgctcctgttgttcggtaacattg 2950 Query: 541 aggtaggagtcctcgcccagcagaaacatactgggcg 577 ||||||||||||||||||||||||||||||||||||| Sbjct: 2949 aggtaggagtcctcgcccagcagaaacatactgggcg 2913 >CG30497-RA feature: mRNA loc=2R:complement(2798651..2802821,2839376..2840786, 2842628..2843515);ID=FBan0030497;gene_id=FBgn0050497;gene _sym=CG30497;sym=CG30497;scaffold=AE003840;len=6470 Length = 6470 Score = 1144 bits (577), Expect = 0.0 Identities = 577/577 (100%) Strand = Plus / Minus Query: 1 agactttcaataggttttacaaagtaaaatttagttttcgtaggcaaagaaagttacaca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5106 agactttcaataggttttacaaagtaaaatttagttttcgtaggcaaagaaagttacaca 5047 Query: 61 aataacgtaaatgttgtgcatatggtgtaaaaggattttcatatagccaaactagtgatg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5046 aataacgtaaatgttgtgcatatggtgtaaaaggattttcatatagccaaactagtgatg 4987 Query: 121 tgatacgcaatcgttttcgtcctttttgtgtgtcagtgatttaggtggtgtccctgttca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4986 tgatacgcaatcgttttcgtcctttttgtgtgtcagtgatttaggtggtgtccctgttca 4927 Query: 181 acatctaacagcggctgaagttcagtctgcggttcaaactctcgggatagttacattatt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4926 acatctaacagcggctgaagttcagtctgcggttcaaactctcgggatagttacattatt 4867 Query: 241 aaagtaggagcgcgtgtgtgccaagtgtcgtggaaaggctttcaagtcgccggacacatt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4866 aaagtaggagcgcgtgtgtgccaagtgtcgtggaaaggctttcaagtcgccggacacatt 4807 Query: 301 caattagagatatagaaaaggaacagtgaaatagacctctgatcatacagttaacgaaga 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4806 caattagagatatagaaaaggaacagtgaaatagacctctgatcatacagttaacgaaga 4747 Query: 361 aagtagccaaccgaatatatgagtaatgatgaatcaacagtaatcgtaaagtgccaagtg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4746 aagtagccaaccgaatatatgagtaatgatgaatcaacagtaatcgtaaagtgccaagtg 4687 Query: 421 gcacggccaggccagcaagcatgaaccgtttcccacatcttcttctccacatcctagaca 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4686 gcacggccaggccagcaagcatgaaccgtttcccacatcttcttctccacatcctagaca 4627 Query: 481 aactggtgattatggtgctgatgctggtgctggtgctgctcctgttgttcggtaacattg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4626 aactggtgattatggtgctgatgctggtgctggtgctgctcctgttgttcggtaacattg 4567 Query: 541 aggtaggagtcctcgcccagcagaaacatactgggcg 577 ||||||||||||||||||||||||||||||||||||| Sbjct: 4566 aggtaggagtcctcgcccagcagaaacatactgggcg 4530 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,831 Number of Sequences: 18737 Number of extensions: 15831 Number of successful extensions: 943 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 937 Number of HSP's gapped (non-prelim): 6 length of query: 577 length of database: 41,270,998 effective HSP length: 17 effective length of query: 560 effective length of database: 40,952,469 effective search space: 22933382640 effective search space used: 22933382640 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA979263|AA979263 LD33633.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD33633 5prime, mRNA sequence. (795 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG30404-RA feature: mRNA loc=2R:complement(16760326..16761247,16... 1576 0.0 CG30404-RB feature: mRNA loc=2R:complement(16760326..16761247,16... 1439 0.0 >CG30404-RA feature: mRNA loc=2R:complement(16760326..16761247,16762632..16763234, 16763406..16763512);ID=FBan0030404;gene_id=FBgn0050404;g ene_sym=CG30404;sym=CG30404;scaffold=AE003455;len=1632 Length = 1632 Score = 1576 bits (795), Expect = 0.0 Identities = 795/795 (100%) Strand = Plus / Plus Query: 1 aaaaggcaggagaaaaattgtaaattattacggatttctcggacatttttctgtcatttc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 39 aaaaggcaggagaaaaattgtaaattattacggatttctcggacatttttctgtcatttc 98 Query: 61 ccgagcaatcaagtgaggcccattggatcagttgaaaggattccccaggacatcgccatg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 99 ccgagcaatcaagtgaggcccattggatcagttgaaaggattccccaggacatcgccatg 158 Query: 121 gtgaccccgcaatcgccgacgcccatgttcaatggattggacgatgatctctacagcgac 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 159 gtgaccccgcaatcgccgacgcccatgttcaatggattggacgatgatctctacagcgac 218 Query: 181 gccaaatatgcccacgagattaacgacaagatgcgggttcccaaaagaataaaggccacc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 219 gccaaatatgcccacgagattaacgacaagatgcgggttcccaaaagaataaaggccacc 278 Query: 241 ggggagtattccaacgaggatctgctgctgtccaaccagaacgggatgatcagctcctgg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 279 ggggagtattccaacgaggatctgctgctgtccaaccagaacgggatgatcagctcctgg 338 Query: 301 aactatcacgacaagatcgacatgaatgtaccggatcgaattgtggtcctgggccacaat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 339 aactatcacgacaagatcgacatgaatgtaccggatcgaattgtggtcctgggccacaat 398 Query: 361 cagcatctggagacgcgatctgctccgcgggaaatccagctggagaactccattctgccc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 399 cagcatctggagacgcgatctgctccgcgggaaatccagctggagaactccattctgccc 458 Query: 421 aagaacccatcggtcggattggtgcgcgtccagacgccaccgcgcattatcaccctcacc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 459 aagaacccatcggtcggattggtgcgcgtccagacgccaccgcgcattatcaccctcacc 518 Query: 481 gatcaacactttccctcggcctccgaggagagctcgcccatccgggccaatggtcatcat 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 519 gatcaacactttccctcggcctccgaggagagctcgcccatccgggccaatggtcatcat 578 Query: 541 ttgtatggtaatgatctcgacgaggacgccgacgatgaggaggtccatgccacccaatat 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 579 ttgtatggtaatgatctcgacgaggacgccgacgatgaggaggtccatgccacccaatat 638 Query: 601 gtgcgtgccaatggagtcgcccgtatgggatttcaaggcaatgacaccaattccgttgaa 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 639 gtgcgtgccaatggagtcgcccgtatgggatttcaaggcaatgacaccaattccgttgaa 698 Query: 661 tcggactcgcagttgaccacaggcagtgccagcaagcgctcgcagctgaatcaacagcag 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 699 tcggactcgcagttgaccacaggcagtgccagcaagcgctcgcagctgaatcaacagcag 758 Query: 721 cacaacaacctggatgcctcaatgctggcgcaccgagagggcacgcccatgggcgagctg 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 759 cacaacaacctggatgcctcaatgctggcgcaccgagagggcacgcccatgggcgagctg 818 Query: 781 acgccccacgaggag 795 ||||||||||||||| Sbjct: 819 acgccccacgaggag 833 >CG30404-RB feature: mRNA loc=2R:complement(16760326..16761247, 16762632..16763396);ID=FBan0030404;gene_id=FBgn0050404;g ene_sym=CG30404;sym=CG30404;scaffold=AE003455;len=1687 Length = 1687 Score = 1439 bits (726), Expect = 0.0 Identities = 726/726 (100%) Strand = Plus / Plus Query: 70 caagtgaggcccattggatcagttgaaaggattccccaggacatcgccatggtgaccccg 129 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 163 caagtgaggcccattggatcagttgaaaggattccccaggacatcgccatggtgaccccg 222 Query: 130 caatcgccgacgcccatgttcaatggattggacgatgatctctacagcgacgccaaatat 189 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 223 caatcgccgacgcccatgttcaatggattggacgatgatctctacagcgacgccaaatat 282 Query: 190 gcccacgagattaacgacaagatgcgggttcccaaaagaataaaggccaccggggagtat 249 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 283 gcccacgagattaacgacaagatgcgggttcccaaaagaataaaggccaccggggagtat 342 Query: 250 tccaacgaggatctgctgctgtccaaccagaacgggatgatcagctcctggaactatcac 309 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 343 tccaacgaggatctgctgctgtccaaccagaacgggatgatcagctcctggaactatcac 402 Query: 310 gacaagatcgacatgaatgtaccggatcgaattgtggtcctgggccacaatcagcatctg 369 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 403 gacaagatcgacatgaatgtaccggatcgaattgtggtcctgggccacaatcagcatctg 462 Query: 370 gagacgcgatctgctccgcgggaaatccagctggagaactccattctgcccaagaaccca 429 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 463 gagacgcgatctgctccgcgggaaatccagctggagaactccattctgcccaagaaccca 522 Query: 430 tcggtcggattggtgcgcgtccagacgccaccgcgcattatcaccctcaccgatcaacac 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 523 tcggtcggattggtgcgcgtccagacgccaccgcgcattatcaccctcaccgatcaacac 582 Query: 490 tttccctcggcctccgaggagagctcgcccatccgggccaatggtcatcatttgtatggt 549 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 583 tttccctcggcctccgaggagagctcgcccatccgggccaatggtcatcatttgtatggt 642 Query: 550 aatgatctcgacgaggacgccgacgatgaggaggtccatgccacccaatatgtgcgtgcc 609 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 643 aatgatctcgacgaggacgccgacgatgaggaggtccatgccacccaatatgtgcgtgcc 702 Query: 610 aatggagtcgcccgtatgggatttcaaggcaatgacaccaattccgttgaatcggactcg 669 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 703 aatggagtcgcccgtatgggatttcaaggcaatgacaccaattccgttgaatcggactcg 762 Query: 670 cagttgaccacaggcagtgccagcaagcgctcgcagctgaatcaacagcagcacaacaac 729 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 763 cagttgaccacaggcagtgccagcaagcgctcgcagctgaatcaacagcagcacaacaac 822 Query: 730 ctggatgcctcaatgctggcgcaccgagagggcacgcccatgggcgagctgacgccccac 789 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 823 ctggatgcctcaatgctggcgcaccgagagggcacgcccatgggcgagctgacgccccac 882 Query: 790 gaggag 795 |||||| Sbjct: 883 gaggag 888 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 25,846 Number of Sequences: 18737 Number of extensions: 25846 Number of successful extensions: 635 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 633 Number of HSP's gapped (non-prelim): 2 length of query: 795 length of database: 41,270,998 effective HSP length: 17 effective length of query: 778 effective length of database: 40,952,469 effective search space: 31861020882 effective search space used: 31861020882 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI061668|AI061668 LD33742.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD33742 5prime similar to M21017: D.melanogaster 18S, 5.8S 2S and 28S rRNA genes, complete, and 18S rRNA gene, 5' end, clone pDm238, mRNA sequence. (539 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8157 Number of Sequences: 18737 Number of extensions: 8157 Number of successful extensions: 155 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 155 Number of HSP's gapped (non-prelim): 0 length of query: 539 length of database: 41,270,998 effective HSP length: 17 effective length of query: 522 effective length of database: 40,952,469 effective search space: 21377188818 effective search space used: 21377188818 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI257106|AI257106 LP05376.5prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP05376 5, mRNA sequence. (691 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG8448-RD feature: mRNA loc=2R:complement(11267047..11268106,112... 811 0.0 CG8448-RC feature: mRNA loc=2R:complement(11267047..11268106,112... 811 0.0 CG8448-RB feature: mRNA loc=2R:complement(11267047..11268106,112... 811 0.0 CG8448-RA feature: mRNA loc=2R:complement(11267047..11268106,112... 811 0.0 >CG8448-RD feature: mRNA loc=2R:complement(11267047..11268106,11268167..11268479, 11268550..11268756,11269435..11269544,11269626..11269804, 11285395..11285521);ID=FBan0008448;gene_id=FBgn0034091;ge ne_sym=CG8448;sym=CG8448;scaffold=AE003807;len=1996 Length = 1996 Score = 811 bits (409), Expect = 0.0 Identities = 409/409 (100%) Strand = Plus / Minus Query: 9 ctcgtggtgctcgatggtgttggctttattccaccggtgcaattttgttgtagggcagct 68 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1468 ctcgtggtgctcgatggtgttggctttattccaccggtgcaattttgttgtagggcagct 1409 Query: 69 gtgttcaaaaactatgcttaaaaaataaatttccatatttcgctattacggggaattttg 128 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1408 gtgttcaaaaactatgcttaaaaaataaatttccatatttcgctattacggggaattttg 1349 Query: 129 atttaattcaatggcctgttccatgttccatatttttggtgtggatatcgctgctgttag 188 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1348 atttaattcaatggcctgttccatgttccatatttttggtgtggatatcgctgctgttag 1289 Query: 189 tgtttctgctgttgattaatttttgcttggtcctttcgctggctgttgattcatttatgg 248 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1288 tgtttctgctgttgattaatttttgcttggtcctttcgctggctgttgattcatttatgg 1229 Query: 249 tgctgttcggtccattaaaagtaactaaattgtagtgtagagcaaagttttaaagtttta 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1228 tgctgttcggtccattaaaagtaactaaattgtagtgtagagcaaagttttaaagtttta 1169 Query: 309 aaagtatcatatttcgaagcggtaacgaattccgagttcttcttgggcttgttaatattc 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1168 aaagtatcatatttcgaagcggtaacgaattccgagttcttcttgggcttgttaatattc 1109 Query: 369 attcggctttacatttatgacttttcctttgttgatttttgttgatatt 417 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1108 attcggctttacatttatgacttttcctttgttgatttttgttgatatt 1060 Score = 458 bits (231), Expect = e-128 Identities = 253/259 (97%), Gaps = 1/259 (0%) Strand = Plus / Minus Query: 433 tatgtgtgaatttaattaattagctattgaagggagcccatcacagtctttgatttcaga 492 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1044 tatgtgtgaatttaattaattagctattgaagggagcccatcacagtctttgatttcaga 985 Query: 493 acatcattttcatatgaaaagacagtttccttgccgttttcgacgacccgtttggtcatc 552 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 984 acatcattttcatatgaaaagacagtttccttgccgttttcgacgacccgtttggtcatc 925 Query: 553 agtttcttgccattcacaaacaccgtcgaaatggaagtgcgcttgacactggcaccgggt 612 |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct: 924 agtttcttgccattcacaaacaccgtcgaagtggaggtgcgcttgacactggcaccgggt 865 Query: 613 ccgctggagatgtgggtgacaccgctgctgccattgccgtgggtcattgaccagaacgag 672 ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct: 864 ccgctggagatgtgggtgacaccgctgctgccattgccgtgggtcatcgacgagaacgag 805 Query: 673 gtgaaacccgctggtgggc 691 ||| || |||||||||||| Sbjct: 804 gtg-aagccgctggtgggc 787 >CG8448-RC feature: mRNA loc=2R:complement(11267047..11268106,11268167..11268479, 11268550..11268756,11269435..11269544,11269626..11269804, 11273293..11273568);ID=FBan0008448;gene_id=FBgn0034091;ge ne_sym=CG8448;sym=CG8448;scaffold=AE003807;len=2145 Length = 2145 Score = 811 bits (409), Expect = 0.0 Identities = 409/409 (100%) Strand = Plus / Minus Query: 9 ctcgtggtgctcgatggtgttggctttattccaccggtgcaattttgttgtagggcagct 68 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1617 ctcgtggtgctcgatggtgttggctttattccaccggtgcaattttgttgtagggcagct 1558 Query: 69 gtgttcaaaaactatgcttaaaaaataaatttccatatttcgctattacggggaattttg 128 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1557 gtgttcaaaaactatgcttaaaaaataaatttccatatttcgctattacggggaattttg 1498 Query: 129 atttaattcaatggcctgttccatgttccatatttttggtgtggatatcgctgctgttag 188 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1497 atttaattcaatggcctgttccatgttccatatttttggtgtggatatcgctgctgttag 1438 Query: 189 tgtttctgctgttgattaatttttgcttggtcctttcgctggctgttgattcatttatgg 248 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1437 tgtttctgctgttgattaatttttgcttggtcctttcgctggctgttgattcatttatgg 1378 Query: 249 tgctgttcggtccattaaaagtaactaaattgtagtgtagagcaaagttttaaagtttta 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1377 tgctgttcggtccattaaaagtaactaaattgtagtgtagagcaaagttttaaagtttta 1318 Query: 309 aaagtatcatatttcgaagcggtaacgaattccgagttcttcttgggcttgttaatattc 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1317 aaagtatcatatttcgaagcggtaacgaattccgagttcttcttgggcttgttaatattc 1258 Query: 369 attcggctttacatttatgacttttcctttgttgatttttgttgatatt 417 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1257 attcggctttacatttatgacttttcctttgttgatttttgttgatatt 1209 Score = 458 bits (231), Expect = e-128 Identities = 253/259 (97%), Gaps = 1/259 (0%) Strand = Plus / Minus Query: 433 tatgtgtgaatttaattaattagctattgaagggagcccatcacagtctttgatttcaga 492 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1193 tatgtgtgaatttaattaattagctattgaagggagcccatcacagtctttgatttcaga 1134 Query: 493 acatcattttcatatgaaaagacagtttccttgccgttttcgacgacccgtttggtcatc 552 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1133 acatcattttcatatgaaaagacagtttccttgccgttttcgacgacccgtttggtcatc 1074 Query: 553 agtttcttgccattcacaaacaccgtcgaaatggaagtgcgcttgacactggcaccgggt 612 |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct: 1073 agtttcttgccattcacaaacaccgtcgaagtggaggtgcgcttgacactggcaccgggt 1014 Query: 613 ccgctggagatgtgggtgacaccgctgctgccattgccgtgggtcattgaccagaacgag 672 ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct: 1013 ccgctggagatgtgggtgacaccgctgctgccattgccgtgggtcatcgacgagaacgag 954 Query: 673 gtgaaacccgctggtgggc 691 ||| || |||||||||||| Sbjct: 953 gtg-aagccgctggtgggc 936 >CG8448-RB feature: mRNA loc=2R:complement(11267047..11268106,11268167..11268479, 11268550..11268756,11269435..11269544,11269626..11269804, 11273915..11274124);ID=FBan0008448;gene_id=FBgn0034091;ge ne_sym=CG8448;sym=CG8448;scaffold=AE003807;len=2079 Length = 2079 Score = 811 bits (409), Expect = 0.0 Identities = 409/409 (100%) Strand = Plus / Minus Query: 9 ctcgtggtgctcgatggtgttggctttattccaccggtgcaattttgttgtagggcagct 68 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1551 ctcgtggtgctcgatggtgttggctttattccaccggtgcaattttgttgtagggcagct 1492 Query: 69 gtgttcaaaaactatgcttaaaaaataaatttccatatttcgctattacggggaattttg 128 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1491 gtgttcaaaaactatgcttaaaaaataaatttccatatttcgctattacggggaattttg 1432 Query: 129 atttaattcaatggcctgttccatgttccatatttttggtgtggatatcgctgctgttag 188 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1431 atttaattcaatggcctgttccatgttccatatttttggtgtggatatcgctgctgttag 1372 Query: 189 tgtttctgctgttgattaatttttgcttggtcctttcgctggctgttgattcatttatgg 248 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1371 tgtttctgctgttgattaatttttgcttggtcctttcgctggctgttgattcatttatgg 1312 Query: 249 tgctgttcggtccattaaaagtaactaaattgtagtgtagagcaaagttttaaagtttta 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1311 tgctgttcggtccattaaaagtaactaaattgtagtgtagagcaaagttttaaagtttta 1252 Query: 309 aaagtatcatatttcgaagcggtaacgaattccgagttcttcttgggcttgttaatattc 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1251 aaagtatcatatttcgaagcggtaacgaattccgagttcttcttgggcttgttaatattc 1192 Query: 369 attcggctttacatttatgacttttcctttgttgatttttgttgatatt 417 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1191 attcggctttacatttatgacttttcctttgttgatttttgttgatatt 1143 Score = 458 bits (231), Expect = e-128 Identities = 253/259 (97%), Gaps = 1/259 (0%) Strand = Plus / Minus Query: 433 tatgtgtgaatttaattaattagctattgaagggagcccatcacagtctttgatttcaga 492 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1127 tatgtgtgaatttaattaattagctattgaagggagcccatcacagtctttgatttcaga 1068 Query: 493 acatcattttcatatgaaaagacagtttccttgccgttttcgacgacccgtttggtcatc 552 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1067 acatcattttcatatgaaaagacagtttccttgccgttttcgacgacccgtttggtcatc 1008 Query: 553 agtttcttgccattcacaaacaccgtcgaaatggaagtgcgcttgacactggcaccgggt 612 |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct: 1007 agtttcttgccattcacaaacaccgtcgaagtggaggtgcgcttgacactggcaccgggt 948 Query: 613 ccgctggagatgtgggtgacaccgctgctgccattgccgtgggtcattgaccagaacgag 672 ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct: 947 ccgctggagatgtgggtgacaccgctgctgccattgccgtgggtcatcgacgagaacgag 888 Query: 673 gtgaaacccgctggtgggc 691 ||| || |||||||||||| Sbjct: 887 gtg-aagccgctggtgggc 870 >CG8448-RA feature: mRNA loc=2R:complement(11267047..11268106,11268167..11268479, 11268550..11268756,11269435..11269544,11269626..11269804, 11269897..11269987);ID=FBan0008448;gene_id=FBgn0034091;ge ne_sym=CG8448;sym=CG8448;scaffold=AE003807;len=1960 Length = 1960 Score = 811 bits (409), Expect = 0.0 Identities = 409/409 (100%) Strand = Plus / Minus Query: 9 ctcgtggtgctcgatggtgttggctttattccaccggtgcaattttgttgtagggcagct 68 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1432 ctcgtggtgctcgatggtgttggctttattccaccggtgcaattttgttgtagggcagct 1373 Query: 69 gtgttcaaaaactatgcttaaaaaataaatttccatatttcgctattacggggaattttg 128 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1372 gtgttcaaaaactatgcttaaaaaataaatttccatatttcgctattacggggaattttg 1313 Query: 129 atttaattcaatggcctgttccatgttccatatttttggtgtggatatcgctgctgttag 188 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1312 atttaattcaatggcctgttccatgttccatatttttggtgtggatatcgctgctgttag 1253 Query: 189 tgtttctgctgttgattaatttttgcttggtcctttcgctggctgttgattcatttatgg 248 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1252 tgtttctgctgttgattaatttttgcttggtcctttcgctggctgttgattcatttatgg 1193 Query: 249 tgctgttcggtccattaaaagtaactaaattgtagtgtagagcaaagttttaaagtttta 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1192 tgctgttcggtccattaaaagtaactaaattgtagtgtagagcaaagttttaaagtttta 1133 Query: 309 aaagtatcatatttcgaagcggtaacgaattccgagttcttcttgggcttgttaatattc 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1132 aaagtatcatatttcgaagcggtaacgaattccgagttcttcttgggcttgttaatattc 1073 Query: 369 attcggctttacatttatgacttttcctttgttgatttttgttgatatt 417 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1072 attcggctttacatttatgacttttcctttgttgatttttgttgatatt 1024 Score = 458 bits (231), Expect = e-128 Identities = 253/259 (97%), Gaps = 1/259 (0%) Strand = Plus / Minus Query: 433 tatgtgtgaatttaattaattagctattgaagggagcccatcacagtctttgatttcaga 492 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1008 tatgtgtgaatttaattaattagctattgaagggagcccatcacagtctttgatttcaga 949 Query: 493 acatcattttcatatgaaaagacagtttccttgccgttttcgacgacccgtttggtcatc 552 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 948 acatcattttcatatgaaaagacagtttccttgccgttttcgacgacccgtttggtcatc 889 Query: 553 agtttcttgccattcacaaacaccgtcgaaatggaagtgcgcttgacactggcaccgggt 612 |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct: 888 agtttcttgccattcacaaacaccgtcgaagtggaggtgcgcttgacactggcaccgggt 829 Query: 613 ccgctggagatgtgggtgacaccgctgctgccattgccgtgggtcattgaccagaacgag 672 ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct: 828 ccgctggagatgtgggtgacaccgctgctgccattgccgtgggtcatcgacgagaacgag 769 Query: 673 gtgaaacccgctggtgggc 691 ||| || |||||||||||| Sbjct: 768 gtg-aagccgctggtgggc 751 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 18,728 Number of Sequences: 18737 Number of extensions: 18728 Number of successful extensions: 488 Number of sequences better than 1.0e-100: 4 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 476 Number of HSP's gapped (non-prelim): 12 length of query: 691 length of database: 41,270,998 effective HSP length: 17 effective length of query: 674 effective length of database: 40,952,469 effective search space: 27601964106 effective search space used: 27601964106 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI257141|AI257141 LP05425.5prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP05425 5prime, mRNA sequence. (259 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5207 Number of Sequences: 18737 Number of extensions: 5207 Number of successful extensions: 368 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 368 Number of HSP's gapped (non-prelim): 0 length of query: 259 length of database: 41,270,998 effective HSP length: 16 effective length of query: 243 effective length of database: 40,971,206 effective search space: 9956003058 effective search space used: 9956003058 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI257803|AI257803 LP06279.5prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP06279 5prime, mRNA sequence. (661 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG17377-RB feature: mRNA loc=2L:complement(6793579..6793866,6793... 1283 0.0 CG17377-RA feature: mRNA loc=2L:complement(6793579..6793866,6793... 1281 0.0 CG17377-RC feature: mRNA loc=2L:complement(6793579..6793866,6793... 680 0.0 >CG17377-RB feature: mRNA loc=2L:complement(6793579..6793866,6793922..6794068, 6794469..6794763,6794827..6794870, 6794924..6795046);ID=FBan0017377;gene_id=FBgn0031859;gen e_sym=CG17377;sym=CG17377;scaffold=AE003615;len=897 Length = 897 Score = 1283 bits (647), Expect = 0.0 Identities = 658/661 (99%), Gaps = 3/661 (0%) Strand = Plus / Plus Query: 1 ttcgtttcggccagcttctaaattttccaaattccaaatttttcttccaaattaatttga 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 55 ttcgtttcggccagcttctaaattttccaaattccaaatttttcttccaaattaatttga 114 Query: 61 ccaaatagacgctcgacgggctcaagatgtgtgacggatgtggatcgttggagccgcgcg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 115 ccaaatagacgctcgacgggctcaagatgtgtgacggatgtggatcgttggagccgcgcg 174 Query: 121 gatgccgcagtcgggagttacgatgcggcatcatgtacaccacttgcgactgcgtgaagc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 175 gatgccgcagtcgggagttacgatgcggcatcatgtacaccacttgcgactgcgtgaagc 234 Query: 181 ggaacggtctgcaggacaagtgcccgcggtccgcctgccagggccgaccggcctgcctgt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 235 ggaacggtctgcaggacaagtgcccgcggtccgcctgccagggccgaccggcctgcctgt 294 Query: 241 gcttccccttccccacctgcggtccggcggcattcccgctgcgctacgctaacatgatga 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 295 gcttccccttccccacctgcggtccggcggcattcccgctgcgctacgctaacatgatga 354 Query: 301 tgggcgtgaacaataagcgtatgcgctgtgccgccactggagcaccaaatggcggtgccg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 355 tgggcgtgaacaataagcgtatgcgctgtgccgccactggagcaccaaatggcggtgccg 414 Query: 361 gatgcggtggacgcgttgccggcggctgctgtggatgcggtccctgctgctgagctttat 420 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 415 gatgcggtggacgcgttgccggcggctgctgtggatgcggtcc---ctgctgagctttat 471 Query: 421 gcccactacgctgatccgtcaacaatgatagcatgtcctgggctttgtgagcgtagaggt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 472 gcccactacgctgatccgtcaacaatgatagcatgtcctgggctttgtgagcgtagaggt 531 Query: 481 aggatccatggaccaaatgctgttgccaggccccaaatccttcatgaccctttgacctcc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 532 aggatccatggaccaaatgctgttgccaggccccaaatccttcatgaccctttgacctcc 591 Query: 541 atccgcatcctgtcgcgtgtggcttataagtatttcctggcaagtgtttcgatcggatcc 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 592 atccgcatcctgtcgcgtgtggcttataagtatttcctggcaagtgtttcgatcggatcc 651 Query: 601 tgatatgggccacttccttggcgggacatgttgtcgttttgtgacgtagttttggttgat 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 652 tgatatgggccacttccttggcgggacatgttgtcgttttgtgacgtagttttggttgat 711 Query: 661 a 661 | Sbjct: 712 a 712 >CG17377-RA feature: mRNA loc=2L:complement(6793579..6793866,6793922..6794068, 6794461..6794763,6794827..6794870, 6794924..6795046);ID=FBan0017377;gene_id=FBgn0031859;gen e_sym=CG17377;sym=CG17377;scaffold=AE003615;len=905 Length = 905 Score = 1281 bits (646), Expect = 0.0 Identities = 661/666 (99%), Gaps = 5/666 (0%) Strand = Plus / Plus Query: 1 ttcgtttcggccagcttctaaattttccaaattccaaatttttcttccaaattaatttga 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 55 ttcgtttcggccagcttctaaattttccaaattccaaatttttcttccaaattaatttga 114 Query: 61 ccaaatagacgctcgacgggctcaagatgtgtgacggatgtggatcgttggagccgcgcg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 115 ccaaatagacgctcgacgggctcaagatgtgtgacggatgtggatcgttggagccgcgcg 174 Query: 121 gatgccgcagtcgggagttacgatgcggcatcatgtacaccacttgcgactgcgtgaagc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 175 gatgccgcagtcgggagttacgatgcggcatcatgtacaccacttgcgactgcgtgaagc 234 Query: 181 ggaacggtctgcaggacaagtgcccgcggtccgcctgccagggccgaccggcctgcctgt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 235 ggaacggtctgcaggacaagtgcccgcggtccgcctgccagggccgaccggcctgcctgt 294 Query: 241 gcttccccttccccacctgcggtccggcggcattcccgctgcgctacgctaacatgatga 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 295 gcttccccttccccacctgcggtccggcggcattcccgctgcgctacgctaacatgatga 354 Query: 301 tgggcgtgaacaataagcgtatgcgctgtgccgccactggagcaccaaatggcggtgccg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 355 tgggcgtgaacaataagcgtatgcgctgtgccgccactggagcaccaaatggcggtgccg 414 Query: 361 gatgcggtggacgcgttgccggcggctgctgtggatgcggtccctgctgc-----tgagc 415 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 415 gatgcggtggacgcgttgccggcggctgctgtggatgcggtccctgctgctgtaatgagc 474 Query: 416 tttatgcccactacgctgatccgtcaacaatgatagcatgtcctgggctttgtgagcgta 475 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 475 tttatgcccactacgctgatccgtcaacaatgatagcatgtcctgggctttgtgagcgta 534 Query: 476 gaggtaggatccatggaccaaatgctgttgccaggccccaaatccttcatgaccctttga 535 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 535 gaggtaggatccatggaccaaatgctgttgccaggccccaaatccttcatgaccctttga 594 Query: 536 cctccatccgcatcctgtcgcgtgtggcttataagtatttcctggcaagtgtttcgatcg 595 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 595 cctccatccgcatcctgtcgcgtgtggcttataagtatttcctggcaagtgtttcgatcg 654 Query: 596 gatcctgatatgggccacttccttggcgggacatgttgtcgttttgtgacgtagttttgg 655 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 655 gatcctgatatgggccacttccttggcgggacatgttgtcgttttgtgacgtagttttgg 714 Query: 656 ttgata 661 |||||| Sbjct: 715 ttgata 720 >CG17377-RC feature: mRNA loc=2L:complement(6793579..6793866,6793922..6794120, 6794171..6794763, 6794827..6794870);ID=FBan0017377;gene_id=FBgn0031859;gen e_sym=CG17377;sym=CG17377;scaffold=AE003615;len=1124 Length = 1124 Score = 680 bits (343), Expect = 0.0 Identities = 343/343 (100%) Strand = Plus / Plus Query: 70 cgctcgacgggctcaagatgtgtgacggatgtggatcgttggagccgcgcggatgccgca 129 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 cgctcgacgggctcaagatgtgtgacggatgtggatcgttggagccgcgcggatgccgca 60 Query: 130 gtcgggagttacgatgcggcatcatgtacaccacttgcgactgcgtgaagcggaacggtc 189 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gtcgggagttacgatgcggcatcatgtacaccacttgcgactgcgtgaagcggaacggtc 120 Query: 190 tgcaggacaagtgcccgcggtccgcctgccagggccgaccggcctgcctgtgcttcccct 249 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tgcaggacaagtgcccgcggtccgcctgccagggccgaccggcctgcctgtgcttcccct 180 Query: 250 tccccacctgcggtccggcggcattcccgctgcgctacgctaacatgatgatgggcgtga 309 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 tccccacctgcggtccggcggcattcccgctgcgctacgctaacatgatgatgggcgtga 240 Query: 310 acaataagcgtatgcgctgtgccgccactggagcaccaaatggcggtgccggatgcggtg 369 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 acaataagcgtatgcgctgtgccgccactggagcaccaaatggcggtgccggatgcggtg 300 Query: 370 gacgcgttgccggcggctgctgtggatgcggtccctgctgctg 412 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 gacgcgttgccggcggctgctgtggatgcggtccctgctgctg 343 Score = 496 bits (250), Expect = e-139 Identities = 250/250 (100%) Strand = Plus / Plus Query: 412 gagctttatgcccactacgctgatccgtcaacaatgatagcatgtcctgggctttgtgag 471 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 690 gagctttatgcccactacgctgatccgtcaacaatgatagcatgtcctgggctttgtgag 749 Query: 472 cgtagaggtaggatccatggaccaaatgctgttgccaggccccaaatccttcatgaccct 531 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 750 cgtagaggtaggatccatggaccaaatgctgttgccaggccccaaatccttcatgaccct 809 Query: 532 ttgacctccatccgcatcctgtcgcgtgtggcttataagtatttcctggcaagtgtttcg 591 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 810 ttgacctccatccgcatcctgtcgcgtgtggcttataagtatttcctggcaagtgtttcg 869 Query: 592 atcggatcctgatatgggccacttccttggcgggacatgttgtcgttttgtgacgtagtt 651 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 870 atcggatcctgatatgggccacttccttggcgggacatgttgtcgttttgtgacgtagtt 929 Query: 652 ttggttgata 661 |||||||||| Sbjct: 930 ttggttgata 939 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,665 Number of Sequences: 18737 Number of extensions: 16665 Number of successful extensions: 370 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 364 Number of HSP's gapped (non-prelim): 4 length of query: 661 length of database: 41,270,998 effective HSP length: 17 effective length of query: 644 effective length of database: 40,952,469 effective search space: 26373390036 effective search space used: 26373390036 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI257817|AI257817 LP06294.5prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP06294 5prime similar to M21017: D.melanogaster 18S, 5.8S 2S and 28S rRNA genes, complete, and 18S rRNA gene, 5' end, clone pDm238, mRNA sequence. (654 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,810 Number of Sequences: 18737 Number of extensions: 10810 Number of successful extensions: 202 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 202 Number of HSP's gapped (non-prelim): 0 length of query: 654 length of database: 41,270,998 effective HSP length: 17 effective length of query: 637 effective length of database: 40,952,469 effective search space: 26086722753 effective search space used: 26086722753 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI258115|AI258115 LP01220.3prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP01220 3prime similar to U00145: Drosophila melanogaster catalase gene, complete cds, mRNA sequence. (601 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Indy-RC feature: mRNA loc=3L:complement(18777511..18778392,18778... 1132 0.0 Indy-RB feature: mRNA loc=3L:complement(18777511..18778392,18778... 1132 0.0 Indy-RA feature: mRNA loc=3L:complement(18777511..18778392,18778... 1132 0.0 >Indy-RC feature: mRNA loc=3L:complement(18777511..18778392,18778458..18778836, 18779155..18779613,18779719..18779907,18779972..18780120, 18780190..18780306,18780374..18780500,18780826..18780863, 18790031..18790289);ID=FBan0003979;gene_id=FBgn0036816;ge ne_sym=Indy;sym=CG3979;scaffold=AE003519;len=2599 Length = 2599 Score = 1132 bits (571), Expect = 0.0 Identities = 591/601 (98%) Strand = Plus / Minus Query: 1 attgtcgtttgagctttttattatttaatattttttacaaactatataaaacataaatca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2599 attgtcgtttgagctttttattatttaatattttttacaaactatataaaacataaatca 2540 Query: 61 tctgaaaatgtacacagtatcatttaagcttagcctaccgctatttgtgtgttcattttg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2539 tctgaaaatgtacacagtatcatttaagcttagcctaccgctatttgtgtgttcattttg 2480 Query: 121 gttcgcaatgaagtattgagtgagttgttcatttaaaaatttttacaagttgaaaaacat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2479 gttcgcaatgaagtattgagtgagttgttcatttaaaaatttttacaagttgaaaaacat 2420 Query: 181 gtatgaatatgtaagttctctcagtctagttatttaaaatattagcaggccagggctgcc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2419 gtatgaatatgtaagttctctcagtctagttatttaaaatattagcaggccagggctgcc 2360 Query: 241 attgaacaaactgttctaacttttccaaatcttttccatttttatgctaaatgcaacaat 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2359 attgaacaaactgttctaacttttccaaatcttttccatttttatgctaaatgcaacaat 2300 Query: 301 taagtaacattaatttgtatttaaatatttagctgagtgcgtagaccaggtgttcaattc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2299 taagtaacattaatttgtatttaaatatttagctgagtgcgtagaccaggtgttcaattc 2240 Query: 361 ctgattaacagtatattgcgatacgnnnnnnnnnnaacacatttttctaaacagtaggta 420 ||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 2239 ctgattaacagtatattgcgatacgttttttttttaacacatttttctaaacagtaggta 2180 Query: 421 atgcttttgtatcaaaacttttcgcaactctgaaatgcaagtatacatagttaaatattt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2179 atgcttttgtatcaaaacttttcgcaactctgaaatgcaagtatacatagttaaatattt 2120 Query: 481 ttcacatttttcgctgtcagcaaaggcacttttcgtttaaaattccctaaattttcctca 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2119 ttcacatttttcgctgtcagcaaaggcacttttcgtttaaaattccctaaattttcctca 2060 Query: 541 actttatcgctgtgacgggtatgttagttatttacactaattactaactatctagtgcgt 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2059 actttatcgctgtgacgggtatgttagttatttacactaattactaactatctagtgcgt 2000 Query: 601 c 601 | Sbjct: 1999 c 1999 >Indy-RB feature: mRNA loc=3L:complement(18777511..18778392,18778458..18778836, 18779155..18779613,18779719..18779907,18779972..18780120, 18780190..18780306,18780374..18780500,18780826..18780863, 18794915..18795139);ID=FBan0003979;gene_id=FBgn0036816;ge ne_sym=Indy;sym=CG3979;scaffold=AE003519;len=2565 Length = 2565 Score = 1132 bits (571), Expect = 0.0 Identities = 591/601 (98%) Strand = Plus / Minus Query: 1 attgtcgtttgagctttttattatttaatattttttacaaactatataaaacataaatca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2565 attgtcgtttgagctttttattatttaatattttttacaaactatataaaacataaatca 2506 Query: 61 tctgaaaatgtacacagtatcatttaagcttagcctaccgctatttgtgtgttcattttg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2505 tctgaaaatgtacacagtatcatttaagcttagcctaccgctatttgtgtgttcattttg 2446 Query: 121 gttcgcaatgaagtattgagtgagttgttcatttaaaaatttttacaagttgaaaaacat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2445 gttcgcaatgaagtattgagtgagttgttcatttaaaaatttttacaagttgaaaaacat 2386 Query: 181 gtatgaatatgtaagttctctcagtctagttatttaaaatattagcaggccagggctgcc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2385 gtatgaatatgtaagttctctcagtctagttatttaaaatattagcaggccagggctgcc 2326 Query: 241 attgaacaaactgttctaacttttccaaatcttttccatttttatgctaaatgcaacaat 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2325 attgaacaaactgttctaacttttccaaatcttttccatttttatgctaaatgcaacaat 2266 Query: 301 taagtaacattaatttgtatttaaatatttagctgagtgcgtagaccaggtgttcaattc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2265 taagtaacattaatttgtatttaaatatttagctgagtgcgtagaccaggtgttcaattc 2206 Query: 361 ctgattaacagtatattgcgatacgnnnnnnnnnnaacacatttttctaaacagtaggta 420 ||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 2205 ctgattaacagtatattgcgatacgttttttttttaacacatttttctaaacagtaggta 2146 Query: 421 atgcttttgtatcaaaacttttcgcaactctgaaatgcaagtatacatagttaaatattt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2145 atgcttttgtatcaaaacttttcgcaactctgaaatgcaagtatacatagttaaatattt 2086 Query: 481 ttcacatttttcgctgtcagcaaaggcacttttcgtttaaaattccctaaattttcctca 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2085 ttcacatttttcgctgtcagcaaaggcacttttcgtttaaaattccctaaattttcctca 2026 Query: 541 actttatcgctgtgacgggtatgttagttatttacactaattactaactatctagtgcgt 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2025 actttatcgctgtgacgggtatgttagttatttacactaattactaactatctagtgcgt 1966 Query: 601 c 601 | Sbjct: 1965 c 1965 >Indy-RA feature: mRNA loc=3L:complement(18777511..18778392,18778458..18778836, 18779155..18779613,18779719..18779907,18779972..18780120, 18780190..18780306,18780374..18780500,18780826..18780863, 18789252..18789374);ID=FBan0003979;gene_id=FBgn0036816;ge ne_sym=Indy;sym=CG3979;scaffold=AE003519;len=2463 Length = 2463 Score = 1132 bits (571), Expect = 0.0 Identities = 591/601 (98%) Strand = Plus / Minus Query: 1 attgtcgtttgagctttttattatttaatattttttacaaactatataaaacataaatca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2463 attgtcgtttgagctttttattatttaatattttttacaaactatataaaacataaatca 2404 Query: 61 tctgaaaatgtacacagtatcatttaagcttagcctaccgctatttgtgtgttcattttg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2403 tctgaaaatgtacacagtatcatttaagcttagcctaccgctatttgtgtgttcattttg 2344 Query: 121 gttcgcaatgaagtattgagtgagttgttcatttaaaaatttttacaagttgaaaaacat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2343 gttcgcaatgaagtattgagtgagttgttcatttaaaaatttttacaagttgaaaaacat 2284 Query: 181 gtatgaatatgtaagttctctcagtctagttatttaaaatattagcaggccagggctgcc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2283 gtatgaatatgtaagttctctcagtctagttatttaaaatattagcaggccagggctgcc 2224 Query: 241 attgaacaaactgttctaacttttccaaatcttttccatttttatgctaaatgcaacaat 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2223 attgaacaaactgttctaacttttccaaatcttttccatttttatgctaaatgcaacaat 2164 Query: 301 taagtaacattaatttgtatttaaatatttagctgagtgcgtagaccaggtgttcaattc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2163 taagtaacattaatttgtatttaaatatttagctgagtgcgtagaccaggtgttcaattc 2104 Query: 361 ctgattaacagtatattgcgatacgnnnnnnnnnnaacacatttttctaaacagtaggta 420 ||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 2103 ctgattaacagtatattgcgatacgttttttttttaacacatttttctaaacagtaggta 2044 Query: 421 atgcttttgtatcaaaacttttcgcaactctgaaatgcaagtatacatagttaaatattt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2043 atgcttttgtatcaaaacttttcgcaactctgaaatgcaagtatacatagttaaatattt 1984 Query: 481 ttcacatttttcgctgtcagcaaaggcacttttcgtttaaaattccctaaattttcctca 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1983 ttcacatttttcgctgtcagcaaaggcacttttcgtttaaaattccctaaattttcctca 1924 Query: 541 actttatcgctgtgacgggtatgttagttatttacactaattactaactatctagtgcgt 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1923 actttatcgctgtgacgggtatgttagttatttacactaattactaactatctagtgcgt 1864 Query: 601 c 601 | Sbjct: 1863 c 1863 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,038 Number of Sequences: 18737 Number of extensions: 15038 Number of successful extensions: 446 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 440 Number of HSP's gapped (non-prelim): 6 length of query: 601 length of database: 41,270,998 effective HSP length: 17 effective length of query: 584 effective length of database: 40,952,469 effective search space: 23916241896 effective search space used: 23916241896 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI258313|AI258313 LP01468.5prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP01468 5prime, mRNA sequence. (644 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG8584-RA feature: mRNA loc=2R:complement(3761439..3762541);ID=F... 1271 0.0 >CG8584-RA feature: mRNA loc=2R:complement(3761439..3762541);ID=FBan0008584;gene_ id=FBgn0033322;gene_sym=CG8584;sym=CG8584;scaffold=AE003 836;len=1103 Length = 1103 Score = 1271 bits (641), Expect = 0.0 Identities = 643/644 (99%) Strand = Plus / Plus Query: 1 caccagcagaactcttaaattgactccaatgtaaggacgggatataatgtaagacagcga 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 58 caccagcagaactcttaaattgactccaatgtaaggacgggatataatgtaagacagcga 117 Query: 61 gccgactccactagcctgtgcattgaaaaagaaaggactcgggtgcaaaatggtcagtca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 118 gccgactccactagcctgtgcattgaaaaagaaaggactcgggtgcaaaatggtcagtca 177 Query: 121 gctgcccgcacagtctgctgatttagacaagctcgctccatcaggtcagtttgccgtcgc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 178 gctgcccgcacagtctgctgatttagacaagctcgctccatcaggtcagtttgccgtcgc 237 Query: 181 tgtggtcagcaatctccagagatcgcgttcgagctccgatcgccgggggctcgtcttgat 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 238 tgtggtcagcaatctccagagatcgcgttcgagctccgatcgccgggggctcgtcttgat 297 Query: 241 cctgctctccagcgacctgggcacctacatcagacgcctgctggcccgtgtggcggagaa 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 298 cctgctctccagcgacctgggcacctacatcagacgcctgctggcccgtgtggcggagaa 357 Query: 301 ggcatgtacgatcctacgtacatatctggggcttagctaccgggaagtgtccgtgtccca 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 358 ggcatgtacgatcctacgtacatatctggggcttagctaccgggaagtgtccgtgtccca 417 Query: 361 ggacatggcccacagactggccgtggttggccggaagaccctggtcctggacctggatga 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 418 ggacatggcccacagactggccgtggttggccggaagaccctggtcctggacctggatga 477 Query: 421 gactctggtgcactcatgttacctcgatccggacacccacgacaacgtgggatgtagcca 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 478 gactctggtgcactcatgttacctcgatccggacacccacgacaacgtgggatgtagcca 537 Query: 481 gttgcccgaacacgcacaaccggactatgtgctcaatatttccatcgacgggatggaacc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 538 gttgcccgaacacgcacaaccggactatgtgctcaatatttccatcgacgggatggaacc 597 Query: 541 tatcgttttccgggtcttcaagcggccgcatgtagacgagttcctggactttgtgtccaa 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 598 tatcgttttccgggtcttcaagcggccgcatgtagacgagttcctggactttgtgtccaa 657 Query: 601 gtggtacgacctggtgatctatacggncagcctggaggtctatg 644 |||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 658 gtggtacgacctggtgatctatacggccagcctggaggtctatg 701 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,256 Number of Sequences: 18737 Number of extensions: 12256 Number of successful extensions: 207 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 206 Number of HSP's gapped (non-prelim): 1 length of query: 644 length of database: 41,270,998 effective HSP length: 17 effective length of query: 627 effective length of database: 40,952,469 effective search space: 25677198063 effective search space used: 25677198063 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI258367|AI258367 LP01542.5prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP01542 5 similar to U02279: Drosophila melanogaster telomere-associated transposons TART, TART-A and HeT-A, and TART-A ORF2 gene, partial cds, mRNA sequence. (830 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 21,943 Number of Sequences: 18737 Number of extensions: 21943 Number of successful extensions: 982 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 982 Number of HSP's gapped (non-prelim): 0 length of query: 830 length of database: 41,270,998 effective HSP length: 17 effective length of query: 813 effective length of database: 40,952,469 effective search space: 33294357297 effective search space used: 33294357297 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI258389|AI258389 LP01573.3prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP01573 3prime, mRNA sequence. (521 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG5703-RA feature: mRNA loc=X:join(17363048..17363138,17363213..... 1015 0.0 >CG5703-RA feature: mRNA loc=X:join(17363048..17363138,17363213..17363419, 17363549..17364067, 17364222..17364465);ID=FBan0005703;gene_id=FBgn0030853;ge ne_sym=CG5703;sym=CG5703;scaffold=AE003506;len=1061 Length = 1061 Score = 1015 bits (512), Expect = 0.0 Identities = 512/512 (100%) Strand = Plus / Minus Query: 10 ctctataagttgcttaacatttatttaactttcgttcgacaatcagtgataggttctgct 69 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1061 ctctataagttgcttaacatttatttaactttcgttcgacaatcagtgataggttctgct 1002 Query: 70 ccttgctcatcctctacagaccggcctgcagaccaaagccaggacccttgggctcctcgc 129 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1001 ccttgctcatcctctacagaccggcctgcagaccaaagccaggacccttgggctcctcgc 942 Query: 130 tcagggaagtgggctcgccctttggctcgctggcaaagcgtccgttgcgtggcccagggg 189 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 941 tcagggaagtgggctcgccctttggctcgctggcaaagcgtccgttgcgtggcccagggg 882 Query: 190 gcgatatcttatccgccttcaggtcgttcaggatgtcctgcatgtccttggatgtcagat 249 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 881 gcgatatcttatccgccttcaggtcgttcaggatgtcctgcatgtccttggatgtcagat 822 Query: 250 cctcatagtagtcatcgttgatcgccaccattggcgcattgacacaggcgcccaagcact 309 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 821 cctcatagtagtcatcgttgatcgccaccattggcgcattgacacaggcgcccaagcact 762 Query: 310 cgacctccgagatggtgaacttcctgtccttggtggtgtcgccgacgccgatgcccagct 369 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 761 cgacctccgagatggtgaacttcctgtccttggtggtgtcgccgacgccgatgcccagct 702 Query: 370 gcttcttgcaggtctccaggatgtcgtccgatccgcggagccagcatggtgtggtggtgc 429 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 701 gcttcttgcaggtctccaggatgtcgtccgatccgcggagccagcatggtgtggtggtgc 642 Query: 430 acacctggatgtgatacttgccagtgggcttgcgcatgaacatcgtatagaaagtggcca 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 641 acacctggatgtgatacttgccagtgggcttgcgcatgaacatcgtatagaaagtggcca 582 Query: 490 cctcgtagacgcgcatattgggcaactggaga 521 |||||||||||||||||||||||||||||||| Sbjct: 581 cctcgtagacgcgcatattgggcaactggaga 550 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,287 Number of Sequences: 18737 Number of extensions: 14287 Number of successful extensions: 381 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 380 Number of HSP's gapped (non-prelim): 1 length of query: 521 length of database: 41,270,998 effective HSP length: 17 effective length of query: 504 effective length of database: 40,952,469 effective search space: 20640044376 effective search space used: 20640044376 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI258965|AI258965 LP02275.5prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP02275 5 similar to CG18179: FBan0018179 'endopeptidase' located on: 3L 67B10-67B10;: 04/11/2001 , mRNA sequence. (564 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG18179-RA feature: mRNA loc=3L:9596802..9597675;ID=FBan0018179;... 1118 0.0 >CG18179-RA feature: mRNA loc=3L:9596802..9597675;ID=FBan0018179;gene_id=FBgn00360 23;gene_sym=CG18179;sym=CG18179;scaffold=AE003551;len=87 4 Length = 874 Score = 1118 bits (564), Expect = 0.0 Identities = 564/564 (100%) Strand = Plus / Plus Query: 1 ccatgaagctgttcctacttacactctccgtggccctagccgtggtcgccgcctccccag 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 15 ccatgaagctgttcctacttacactctccgtggccctagccgtggtcgccgcctccccag 74 Query: 61 gcttcaaccgcaccagccttctgccccaggtgaccatttccgagggtgccgagggccgca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 75 gcttcaaccgcaccagccttctgccccaggtgaccatttccgagggtgccgagggccgca 134 Query: 121 tcgtcaacggttacccagcgcccgagggaaaggctccctacattgtgggactgttgatcc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 135 tcgtcaacggttacccagcgcccgagggaaaggctccctacattgtgggactgttgatcc 194 Query: 181 gcaccgatggaagcaacagtgccgcggttggagctggaaccatcatcgccagcgactgga 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 195 gcaccgatggaagcaacagtgccgcggttggagctggaaccatcatcgccagcgactgga 254 Query: 241 ttctgaccgccgctcactgtctgaccaccgactacgtggagatccactatggatccaact 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 255 ttctgaccgccgctcactgtctgaccaccgactacgtggagatccactatggatccaact 314 Query: 301 ggggctggaacggagctttcaggcaatctgtccgccgtgacaactttatcagccatccaa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 315 ggggctggaacggagctttcaggcaatctgtccgccgtgacaactttatcagccatccaa 374 Query: 361 actggcccgctgagggcggtcgtgacatcggtctgatccgcactccctccgtgggcttca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 375 actggcccgctgagggcggtcgtgacatcggtctgatccgcactccctccgtgggcttca 434 Query: 421 ccgacttgatcaacaaggtcgccctgccaagcttcagcgaggagagcgaccgcttcgtgg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 435 ccgacttgatcaacaaggtcgccctgccaagcttcagcgaggagagcgaccgcttcgtgg 494 Query: 481 acacatggtgcgttgcctgcggatggggcggcatggacaatggcaacctggccgactggc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 495 acacatggtgcgttgcctgcggatggggcggcatggacaatggcaacctggccgactggc 554 Query: 541 tgcagtgcatggacgtccagatca 564 |||||||||||||||||||||||| Sbjct: 555 tgcagtgcatggacgtccagatca 578 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,859 Number of Sequences: 18737 Number of extensions: 12859 Number of successful extensions: 367 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 366 Number of HSP's gapped (non-prelim): 1 length of query: 564 length of database: 41,270,998 effective HSP length: 17 effective length of query: 547 effective length of database: 40,952,469 effective search space: 22401000543 effective search space used: 22401000543 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI259115|AI259115 LP02452.5prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP02452 5prime, mRNA sequence. (626 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,042 Number of Sequences: 18737 Number of extensions: 15042 Number of successful extensions: 409 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 409 Number of HSP's gapped (non-prelim): 0 length of query: 626 length of database: 41,270,998 effective HSP length: 17 effective length of query: 609 effective length of database: 40,952,469 effective search space: 24940053621 effective search space used: 24940053621 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI260331|AI260331 LP04128.5prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP04128 5prime, mRNA sequence. (596 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value brat-RC feature: mRNA loc=2L:join(19145650..19145790,19146178..1... 452 e-126 brat-RB feature: mRNA loc=2L:join(19136658..19136838,19144168..1... 452 e-126 brat-RA feature: mRNA loc=2L:join(19111889..19112359,19123877..1... 452 e-126 >brat-RC feature: mRNA loc=2L:join(19145650..19145790, 19146178..19150655);ID=FBan0010719;gene_id=FBgn0010300;ge ne_sym=brat;sym=CG10719;scaffold=AE003661;len=4619 Length = 4619 Score = 452 bits (228), Expect = e-126 Identities = 244/252 (96%) Strand = Plus / Minus Query: 21 gtggagggatttcttctggtatctactatatatagttaaaaagtgtcannnnnnnngttt 80 |||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 3870 gtggagggatttcttctggtatctactatatatagttaaaaagtgtcattttttttgttt 3811 Query: 81 gtttcggttgtttgcttgtgtttgttgaaaatacgacttgcacgcgagatagagatacga 140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3810 gtttcggttgtttgcttgtgtttgttgaaaatacgacttgcacgcgagatagagatacga 3751 Query: 141 gggtttgaagtgagaagtgtgcaaagatatagagaggcggcggcactatccgatttgaac 200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3750 gggtttgaagtgagaagtgtgcaaagatatagagaggcggcggcactatccgatttgaac 3691 Query: 201 atgaacatgaatacacataatatatatttatcataaacaagtacgcacaaataaaaacta 260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3690 atgaacatgaatacacataatatatatttatcataaacaagtacgcacaaataaaaacta 3631 Query: 261 agcttaacagtg 272 |||||||||||| Sbjct: 3630 agcttaacagtg 3619 Score = 452 bits (228), Expect = e-126 Identities = 234/236 (99%) Strand = Plus / Minus Query: 331 tcattccaacagtgtgcgtgtgtgttattacatagcgagcaaagtctaaggctatgagag 390 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3560 tcattccaacagtgtgcgtgtgtgttattacatagcgagcaaagtctaaggctatgagag 3501 Query: 391 atgacagatcgggggagatagtagggatcttatagatttcgatttcaacttcgattgtgt 450 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3500 atgacagatcgggggagatagtagggatcttatagatttcgatttcaacttcgattgtgt 3441 Query: 451 agatttagaattagagctggagagaccgagcaagtcagactattgagaacttagcctata 510 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3440 agatttagaattagagctggagagaccgagcaagtcagactattgagaacttagcctata 3381 Query: 511 gaagtagtgagtgccggaccacagatcctccttctttccggacttacatccatgga 566 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct: 3380 gaagtagtgagtgccggaccacagatcctcctcctttccggactcacatccatgga 3325 >brat-RB feature: mRNA loc=2L:join(19136658..19136838,19144168..19144441, 19146178..19150655);ID=FBan0010719;gene_id=FBgn0010300;ge ne_sym=brat;sym=CG10719;scaffold=AE003661;len=4933 Length = 4933 Score = 452 bits (228), Expect = e-126 Identities = 244/252 (96%) Strand = Plus / Minus Query: 21 gtggagggatttcttctggtatctactatatatagttaaaaagtgtcannnnnnnngttt 80 |||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 4184 gtggagggatttcttctggtatctactatatatagttaaaaagtgtcattttttttgttt 4125 Query: 81 gtttcggttgtttgcttgtgtttgttgaaaatacgacttgcacgcgagatagagatacga 140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4124 gtttcggttgtttgcttgtgtttgttgaaaatacgacttgcacgcgagatagagatacga 4065 Query: 141 gggtttgaagtgagaagtgtgcaaagatatagagaggcggcggcactatccgatttgaac 200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4064 gggtttgaagtgagaagtgtgcaaagatatagagaggcggcggcactatccgatttgaac 4005 Query: 201 atgaacatgaatacacataatatatatttatcataaacaagtacgcacaaataaaaacta 260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4004 atgaacatgaatacacataatatatatttatcataaacaagtacgcacaaataaaaacta 3945 Query: 261 agcttaacagtg 272 |||||||||||| Sbjct: 3944 agcttaacagtg 3933 Score = 452 bits (228), Expect = e-126 Identities = 234/236 (99%) Strand = Plus / Minus Query: 331 tcattccaacagtgtgcgtgtgtgttattacatagcgagcaaagtctaaggctatgagag 390 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3874 tcattccaacagtgtgcgtgtgtgttattacatagcgagcaaagtctaaggctatgagag 3815 Query: 391 atgacagatcgggggagatagtagggatcttatagatttcgatttcaacttcgattgtgt 450 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3814 atgacagatcgggggagatagtagggatcttatagatttcgatttcaacttcgattgtgt 3755 Query: 451 agatttagaattagagctggagagaccgagcaagtcagactattgagaacttagcctata 510 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3754 agatttagaattagagctggagagaccgagcaagtcagactattgagaacttagcctata 3695 Query: 511 gaagtagtgagtgccggaccacagatcctccttctttccggacttacatccatgga 566 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct: 3694 gaagtagtgagtgccggaccacagatcctcctcctttccggactcacatccatgga 3639 >brat-RA feature: mRNA loc=2L:join(19111889..19112359,19123877..19123927, 19144168..19144441, 19146178..19150655);ID=FBan0010719;gene_id=FBgn0010300;ge ne_sym=brat;sym=CG10719;scaffold=AE003661;len=5274 Length = 5274 Score = 452 bits (228), Expect = e-126 Identities = 244/252 (96%) Strand = Plus / Minus Query: 21 gtggagggatttcttctggtatctactatatatagttaaaaagtgtcannnnnnnngttt 80 |||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 4525 gtggagggatttcttctggtatctactatatatagttaaaaagtgtcattttttttgttt 4466 Query: 81 gtttcggttgtttgcttgtgtttgttgaaaatacgacttgcacgcgagatagagatacga 140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4465 gtttcggttgtttgcttgtgtttgttgaaaatacgacttgcacgcgagatagagatacga 4406 Query: 141 gggtttgaagtgagaagtgtgcaaagatatagagaggcggcggcactatccgatttgaac 200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4405 gggtttgaagtgagaagtgtgcaaagatatagagaggcggcggcactatccgatttgaac 4346 Query: 201 atgaacatgaatacacataatatatatttatcataaacaagtacgcacaaataaaaacta 260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4345 atgaacatgaatacacataatatatatttatcataaacaagtacgcacaaataaaaacta 4286 Query: 261 agcttaacagtg 272 |||||||||||| Sbjct: 4285 agcttaacagtg 4274 Score = 452 bits (228), Expect = e-126 Identities = 234/236 (99%) Strand = Plus / Minus Query: 331 tcattccaacagtgtgcgtgtgtgttattacatagcgagcaaagtctaaggctatgagag 390 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4215 tcattccaacagtgtgcgtgtgtgttattacatagcgagcaaagtctaaggctatgagag 4156 Query: 391 atgacagatcgggggagatagtagggatcttatagatttcgatttcaacttcgattgtgt 450 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4155 atgacagatcgggggagatagtagggatcttatagatttcgatttcaacttcgattgtgt 4096 Query: 451 agatttagaattagagctggagagaccgagcaagtcagactattgagaacttagcctata 510 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4095 agatttagaattagagctggagagaccgagcaagtcagactattgagaacttagcctata 4036 Query: 511 gaagtagtgagtgccggaccacagatcctccttctttccggacttacatccatgga 566 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct: 4035 gaagtagtgagtgccggaccacagatcctcctcctttccggactcacatccatgga 3980 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,167 Number of Sequences: 18737 Number of extensions: 11167 Number of successful extensions: 360 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 351 Number of HSP's gapped (non-prelim): 9 length of query: 596 length of database: 41,270,998 effective HSP length: 17 effective length of query: 579 effective length of database: 40,952,469 effective search space: 23711479551 effective search space used: 23711479551 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI260746|AI260746 LP04712.5prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP04712 5prime, mRNA sequence. (616 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31709-RA feature: mRNA loc=2L:complement(9570765..9571260,9571... 1213 0.0 >CG31709-RA feature: mRNA loc=2L:complement(9570765..9571260,9571322..9571676, 9571740..9571867);ID=FBan0031709;gene_id=FBgn0051709;gen e_sym=CG31709;sym=CG31709;scaffold=AE003625;len=979 Length = 979 Score = 1213 bits (612), Expect = 0.0 Identities = 615/616 (99%) Strand = Plus / Plus Query: 1 tatacaactagggattttcctcaacaacaagtttaaattcgttagtcaaccaaaatcgtg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10 tatacaactagggattttcctcaacaacaagtttaaattcgttagtcaaccaaaatcgtg 69 Query: 61 taacaatgggtgcttgtcgccctagaaaatgtagtgcaaataaccgaactatggcaattc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 70 taacaatgggtgcttgtcgccctagaaaatgtagtgcaaataaccgaactatggcaattc 129 Query: 121 gtcgccgtagagctctagttaacttgctatttttgcgccgtcatttgattggacaggcac 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 130 gtcgccgtagagctctagttaacttgctatttttgcgccgtcatttgattggacaggcac 189 Query: 181 ttggaattacgaatcgggaaactccagaccttagggtaaaatcgcggcgacgcaatcgta 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 190 ttggaattacgaatcgggaaactccagaccttagggtaaaatcgcggcgacgcaatcgta 249 Query: 241 gaaggagaatgcaattcagagtccgtacaccaagtgataatgcaatgcgctcagtaaggc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 250 gaaggagaatgcaattcagagtccgtacaccaagtgataatgcaatgcgctcagtaaggc 309 Query: 301 atcatggacagaatccaatcagcccaggatcacggctacaacgaaataatccactttggg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 310 atcatggacagaatccaatcagcccaggatcacggctacaacgaaataatccactttggg 369 Query: 361 gacacgccgacattataaccacagatagagcgttggaagctttaaatggacttactacag 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 370 gacacgccgacattataaccacagatagagcgttggaagctttaaatggacttactacag 429 Query: 421 ggaacagggaaccaaatgcattgtcagtaatggtgcgatataccaatgggcggtattatt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 430 ggaacagggaaccaaatgcattgtcagtaatggtgcgatataccaatgggcggtattatt 489 Query: 481 taagcttagagccaagtggaaatcagcaaaatgagaacaatatcgttcaaaatcccagtc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 490 taagcttagagccaagtggaaatcagcaaaatgagaacaatatcgttcaaaatcccagtc 549 Query: 541 ggaatggtcagaaccaacaggtcgaagacggcaatgatcggaatctttaaccggcagctc 600 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 550 ggaatggtcagaaccaacaggtcgaagacggcaatgatcggaatcttcaaccggcagctc 609 Query: 601 aggcagctgatgatga 616 |||||||||||||||| Sbjct: 610 aggcagctgatgatga 625 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,146 Number of Sequences: 18737 Number of extensions: 11146 Number of successful extensions: 246 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 245 Number of HSP's gapped (non-prelim): 1 length of query: 616 length of database: 41,270,998 effective HSP length: 17 effective length of query: 599 effective length of database: 40,952,469 effective search space: 24530528931 effective search space used: 24530528931 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI261092|AI261092 LP05168.3prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP05168 3prime, mRNA sequence. (485 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31363-RH feature: mRNA loc=3R:complement(7416128..7417047,7418... 634 0.0 CG31363-RE feature: mRNA loc=3R:complement(7416128..7417047,7418... 634 0.0 CG31363-RD feature: mRNA loc=3R:complement(7416128..7417047,7418... 634 0.0 CG31363-RC feature: mRNA loc=3R:complement(7416128..7417047,7418... 634 0.0 CG31363-RB feature: mRNA loc=3R:complement(7416128..7417047,7417... 634 0.0 CG31363-RA feature: mRNA loc=3R:complement(7416128..7417047,7417... 634 0.0 >CG31363-RH feature: mRNA loc=3R:complement(7416128..7417047,7418107..7418364, 7419062..7419094,7419373..7419506, 7445444..7445674);ID=FBan0031363;gene_id=FBgn0051363;gene _sym=CG31363;sym=CG31363;scaffold=AE003692;len=1576 Length = 1576 Score = 634 bits (320), Expect = 0.0 Identities = 320/320 (100%) Strand = Plus / Minus Query: 1 gtacgaaaggtttttattgaacaaatattcgcgcttgaattttgtatttttacacttaat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1576 gtacgaaaggtttttattgaacaaatattcgcgcttgaattttgtatttttacacttaat 1517 Query: 61 tagcacgtgcacattagaaagtgctgtcgtaccgtttaaattacatatttaatgtaatgt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1516 tagcacgtgcacattagaaagtgctgtcgtaccgtttaaattacatatttaatgtaatgt 1457 Query: 121 aatacaatgtttataatgtatgtatgtatgtgttttcgtgagtgttcgtgtgaatgcagt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1456 aatacaatgtttataatgtatgtatgtatgtgttttcgtgagtgttcgtgtgaatgcagt 1397 Query: 181 tggtataaatataaatatatgtggcgtgtagtagcaactaaaataaaatccatgtgtgat 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1396 tggtataaatataaatatatgtggcgtgtagtagcaactaaaataaaatccatgtgtgat 1337 Query: 241 caaaggactccaacaggccgccaccgctcgcatccttgcttctcgcttgcttcacacgta 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1336 caaaggactccaacaggccgccaccgctcgcatccttgcttctcgcttgcttcacacgta 1277 Query: 301 agcacacaccgggttgatga 320 |||||||||||||||||||| Sbjct: 1276 agcacacaccgggttgatga 1257 >CG31363-RE feature: mRNA loc=3R:complement(7416128..7417047,7418107..7418364, 7419062..7419094,7419373..7419506,7429882..7430023, 7430326..7430491);ID=FBan0031363;gene_id=FBgn0051363;gene _sym=CG31363;sym=CG31363;scaffold=AE003692;len=1653 Length = 1653 Score = 634 bits (320), Expect = 0.0 Identities = 320/320 (100%) Strand = Plus / Minus Query: 1 gtacgaaaggtttttattgaacaaatattcgcgcttgaattttgtatttttacacttaat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1653 gtacgaaaggtttttattgaacaaatattcgcgcttgaattttgtatttttacacttaat 1594 Query: 61 tagcacgtgcacattagaaagtgctgtcgtaccgtttaaattacatatttaatgtaatgt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1593 tagcacgtgcacattagaaagtgctgtcgtaccgtttaaattacatatttaatgtaatgt 1534 Query: 121 aatacaatgtttataatgtatgtatgtatgtgttttcgtgagtgttcgtgtgaatgcagt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1533 aatacaatgtttataatgtatgtatgtatgtgttttcgtgagtgttcgtgtgaatgcagt 1474 Query: 181 tggtataaatataaatatatgtggcgtgtagtagcaactaaaataaaatccatgtgtgat 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1473 tggtataaatataaatatatgtggcgtgtagtagcaactaaaataaaatccatgtgtgat 1414 Query: 241 caaaggactccaacaggccgccaccgctcgcatccttgcttctcgcttgcttcacacgta 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1413 caaaggactccaacaggccgccaccgctcgcatccttgcttctcgcttgcttcacacgta 1354 Query: 301 agcacacaccgggttgatga 320 |||||||||||||||||||| Sbjct: 1353 agcacacaccgggttgatga 1334 >CG31363-RD feature: mRNA loc=3R:complement(7416128..7417047,7418107..7418364, 7419373..7419506, 7445444..7445674);ID=FBan0031363;gene_id=FBgn0051363;gene _sym=CG31363;sym=CG31363;scaffold=AE003692;len=1543 Length = 1543 Score = 634 bits (320), Expect = 0.0 Identities = 320/320 (100%) Strand = Plus / Minus Query: 1 gtacgaaaggtttttattgaacaaatattcgcgcttgaattttgtatttttacacttaat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1543 gtacgaaaggtttttattgaacaaatattcgcgcttgaattttgtatttttacacttaat 1484 Query: 61 tagcacgtgcacattagaaagtgctgtcgtaccgtttaaattacatatttaatgtaatgt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1483 tagcacgtgcacattagaaagtgctgtcgtaccgtttaaattacatatttaatgtaatgt 1424 Query: 121 aatacaatgtttataatgtatgtatgtatgtgttttcgtgagtgttcgtgtgaatgcagt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1423 aatacaatgtttataatgtatgtatgtatgtgttttcgtgagtgttcgtgtgaatgcagt 1364 Query: 181 tggtataaatataaatatatgtggcgtgtagtagcaactaaaataaaatccatgtgtgat 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1363 tggtataaatataaatatatgtggcgtgtagtagcaactaaaataaaatccatgtgtgat 1304 Query: 241 caaaggactccaacaggccgccaccgctcgcatccttgcttctcgcttgcttcacacgta 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1303 caaaggactccaacaggccgccaccgctcgcatccttgcttctcgcttgcttcacacgta 1244 Query: 301 agcacacaccgggttgatga 320 |||||||||||||||||||| Sbjct: 1243 agcacacaccgggttgatga 1224 >CG31363-RC feature: mRNA loc=3R:complement(7416128..7417047,7418107..7418364, 7419373..7419506,7429882..7429979, 7430326..7430491);ID=FBan0031363;gene_id=FBgn0051363;gene _sym=CG31363;sym=CG31363;scaffold=AE003692;len=1576 Length = 1576 Score = 634 bits (320), Expect = 0.0 Identities = 320/320 (100%) Strand = Plus / Minus Query: 1 gtacgaaaggtttttattgaacaaatattcgcgcttgaattttgtatttttacacttaat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1576 gtacgaaaggtttttattgaacaaatattcgcgcttgaattttgtatttttacacttaat 1517 Query: 61 tagcacgtgcacattagaaagtgctgtcgtaccgtttaaattacatatttaatgtaatgt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1516 tagcacgtgcacattagaaagtgctgtcgtaccgtttaaattacatatttaatgtaatgt 1457 Query: 121 aatacaatgtttataatgtatgtatgtatgtgttttcgtgagtgttcgtgtgaatgcagt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1456 aatacaatgtttataatgtatgtatgtatgtgttttcgtgagtgttcgtgtgaatgcagt 1397 Query: 181 tggtataaatataaatatatgtggcgtgtagtagcaactaaaataaaatccatgtgtgat 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1396 tggtataaatataaatatatgtggcgtgtagtagcaactaaaataaaatccatgtgtgat 1337 Query: 241 caaaggactccaacaggccgccaccgctcgcatccttgcttctcgcttgcttcacacgta 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1336 caaaggactccaacaggccgccaccgctcgcatccttgcttctcgcttgcttcacacgta 1277 Query: 301 agcacacaccgggttgatga 320 |||||||||||||||||||| Sbjct: 1276 agcacacaccgggttgatga 1257 >CG31363-RB feature: mRNA loc=3R:complement(7416128..7417047,7417241..7417651, 7417735..7417984);ID=FBan0031363;gene_id=FBgn0051363;gene _sym=CG31363;sym=CG31363;scaffold=AE003692;len=1581 Length = 1581 Score = 634 bits (320), Expect = 0.0 Identities = 320/320 (100%) Strand = Plus / Minus Query: 1 gtacgaaaggtttttattgaacaaatattcgcgcttgaattttgtatttttacacttaat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1581 gtacgaaaggtttttattgaacaaatattcgcgcttgaattttgtatttttacacttaat 1522 Query: 61 tagcacgtgcacattagaaagtgctgtcgtaccgtttaaattacatatttaatgtaatgt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1521 tagcacgtgcacattagaaagtgctgtcgtaccgtttaaattacatatttaatgtaatgt 1462 Query: 121 aatacaatgtttataatgtatgtatgtatgtgttttcgtgagtgttcgtgtgaatgcagt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1461 aatacaatgtttataatgtatgtatgtatgtgttttcgtgagtgttcgtgtgaatgcagt 1402 Query: 181 tggtataaatataaatatatgtggcgtgtagtagcaactaaaataaaatccatgtgtgat 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1401 tggtataaatataaatatatgtggcgtgtagtagcaactaaaataaaatccatgtgtgat 1342 Query: 241 caaaggactccaacaggccgccaccgctcgcatccttgcttctcgcttgcttcacacgta 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1341 caaaggactccaacaggccgccaccgctcgcatccttgcttctcgcttgcttcacacgta 1282 Query: 301 agcacacaccgggttgatga 320 |||||||||||||||||||| Sbjct: 1281 agcacacaccgggttgatga 1262 >CG31363-RA feature: mRNA loc=3R:complement(7416128..7417047,7417735..7417752, 7418107..7418364,7419373..7419506, 7445444..7445674);ID=FBan0031363;gene_id=FBgn0051363;gene _sym=CG31363;sym=CG31363;scaffold=AE003692;len=1561 Length = 1561 Score = 634 bits (320), Expect = 0.0 Identities = 320/320 (100%) Strand = Plus / Minus Query: 1 gtacgaaaggtttttattgaacaaatattcgcgcttgaattttgtatttttacacttaat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1561 gtacgaaaggtttttattgaacaaatattcgcgcttgaattttgtatttttacacttaat 1502 Query: 61 tagcacgtgcacattagaaagtgctgtcgtaccgtttaaattacatatttaatgtaatgt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1501 tagcacgtgcacattagaaagtgctgtcgtaccgtttaaattacatatttaatgtaatgt 1442 Query: 121 aatacaatgtttataatgtatgtatgtatgtgttttcgtgagtgttcgtgtgaatgcagt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1441 aatacaatgtttataatgtatgtatgtatgtgttttcgtgagtgttcgtgtgaatgcagt 1382 Query: 181 tggtataaatataaatatatgtggcgtgtagtagcaactaaaataaaatccatgtgtgat 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1381 tggtataaatataaatatatgtggcgtgtagtagcaactaaaataaaatccatgtgtgat 1322 Query: 241 caaaggactccaacaggccgccaccgctcgcatccttgcttctcgcttgcttcacacgta 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1321 caaaggactccaacaggccgccaccgctcgcatccttgcttctcgcttgcttcacacgta 1262 Query: 301 agcacacaccgggttgatga 320 |||||||||||||||||||| Sbjct: 1261 agcacacaccgggttgatga 1242 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,189 Number of Sequences: 18737 Number of extensions: 16189 Number of successful extensions: 949 Number of sequences better than 1.0e-100: 6 Number of HSP's better than 0.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 937 Number of HSP's gapped (non-prelim): 12 length of query: 485 length of database: 41,270,998 effective HSP length: 17 effective length of query: 468 effective length of database: 40,952,469 effective search space: 19165755492 effective search space used: 19165755492 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI293558|AI293558 LP06727.5prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP06727 5prime, mRNA sequence. (560 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7858 Number of Sequences: 18737 Number of extensions: 7858 Number of successful extensions: 149 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 149 Number of HSP's gapped (non-prelim): 0 length of query: 560 length of database: 41,270,998 effective HSP length: 17 effective length of query: 543 effective length of database: 40,952,469 effective search space: 22237190667 effective search space used: 22237190667 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI293585|AI293585 LP06756.5prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP06756 5prime, mRNA sequence. (692 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CR31696-RB feature: ncRNA loc=2L:join(16818223..16818292,1681835... 908 0.0 CR31696-RA feature: ncRNA loc=2L:join(16816677..16816747,1681729... 908 0.0 >CR31696-RB feature: ncRNA loc=2L:join(16818223..16818292,16818354..16818662, 16819429..16819509, 16819583..16819971);ID=FBan0031696;gene_id=FBgn0047133;g ene_sym=CR31696;sym=CR31696;type=ncRNA;scaffold=AE003652 ;len=849 Length = 849 Score = 908 bits (458), Expect = 0.0 Identities = 475/483 (98%) Strand = Plus / Plus Query: 210 tcaggatagcttacatgttgaatttcaattccaagccgccggccatgccatcatcttgtg 269 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 243 tcaggatagcttacatgttgaatttcaattccaagccgccggccatgccatcatcttgtg 302 Query: 270 gtccggtggagcttctaggaccctacgcgtttaagatgtttagcatttaatggatttcta 329 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 303 gtccggtggagcttctaggaccctacgcgtttaagatgtttagcatttaatggatttcta 362 Query: 330 ctagtaacctaagccagatgacgtcaatgccaccagttgccaaaatcgaaggctcggcga 389 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 363 ctagtaacctaagccagatgacgtcaatgccaccagttgccaaaatcgaaggctcggcga 422 Query: 390 tcaggatgagcactttgatgggtaacccctgccatgtgtgctctgccacatttcattcat 449 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 423 tcaggatgagcactttgatgggtaacccctgccatgtgtgctctgccacatttcattcat 482 Query: 450 ctttgaggcgctgcaggatcgatttattttgaaaactgtgctgccggccttggcgtcatc 509 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 483 ctttgaggcgctgcaggatcgatttattttgaaaactgtgctgccggccttggcgtcatc 542 Query: 510 tgctctaatcataaatatagttttgtgatcnnnnnnnattatttttgttcggcaatggaa 569 |||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 543 tgctctaatcataaatatagttttgtgatctttttttattatttttgttcggcaatggaa 602 Query: 570 tctacttagtttgcaattcatagaccatgatgtacagtataagcaaattaagaacaacat 629 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 603 tctacttagtttgcaattcatagaccatgatgtacagtataagcaaattaagaacaacat 662 Query: 630 cagcaatcaatgtgcaccaccgatattatttcattggtaaacagccacgtttatttcgca 689 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 663 cagcaatcaatgtgcaccaccgatattatttcattgttaaacagccacgtttatttcgca 722 Query: 690 ctc 692 ||| Sbjct: 723 ctc 725 >CR31696-RA feature: ncRNA loc=2L:join(16816677..16816747,16817297..16817439, 16818354..16818662,16819429..16819509, 16819583..16819971);ID=FBan0031696;gene_id=FBgn0047133;g ene_sym=CR31696;sym=CR31696;type=ncRNA;scaffold=AE003652 ;len=993 Length = 993 Score = 908 bits (458), Expect = 0.0 Identities = 475/483 (98%) Strand = Plus / Plus Query: 210 tcaggatagcttacatgttgaatttcaattccaagccgccggccatgccatcatcttgtg 269 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 387 tcaggatagcttacatgttgaatttcaattccaagccgccggccatgccatcatcttgtg 446 Query: 270 gtccggtggagcttctaggaccctacgcgtttaagatgtttagcatttaatggatttcta 329 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 447 gtccggtggagcttctaggaccctacgcgtttaagatgtttagcatttaatggatttcta 506 Query: 330 ctagtaacctaagccagatgacgtcaatgccaccagttgccaaaatcgaaggctcggcga 389 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 507 ctagtaacctaagccagatgacgtcaatgccaccagttgccaaaatcgaaggctcggcga 566 Query: 390 tcaggatgagcactttgatgggtaacccctgccatgtgtgctctgccacatttcattcat 449 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 567 tcaggatgagcactttgatgggtaacccctgccatgtgtgctctgccacatttcattcat 626 Query: 450 ctttgaggcgctgcaggatcgatttattttgaaaactgtgctgccggccttggcgtcatc 509 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 627 ctttgaggcgctgcaggatcgatttattttgaaaactgtgctgccggccttggcgtcatc 686 Query: 510 tgctctaatcataaatatagttttgtgatcnnnnnnnattatttttgttcggcaatggaa 569 |||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 687 tgctctaatcataaatatagttttgtgatctttttttattatttttgttcggcaatggaa 746 Query: 570 tctacttagtttgcaattcatagaccatgatgtacagtataagcaaattaagaacaacat 629 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 747 tctacttagtttgcaattcatagaccatgatgtacagtataagcaaattaagaacaacat 806 Query: 630 cagcaatcaatgtgcaccaccgatattatttcattggtaaacagccacgtttatttcgca 689 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 807 cagcaatcaatgtgcaccaccgatattatttcattgttaaacagccacgtttatttcgca 866 Query: 690 ctc 692 ||| Sbjct: 867 ctc 869 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,179 Number of Sequences: 18737 Number of extensions: 16179 Number of successful extensions: 414 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 406 Number of HSP's gapped (non-prelim): 6 length of query: 692 length of database: 41,270,998 effective HSP length: 17 effective length of query: 675 effective length of database: 40,952,469 effective search space: 27642916575 effective search space used: 27642916575 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI293790|AI293790 LP07011.5prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP07011 5prime similar to M21017: D.melanogaster 18S, 5.8S 2S and 28S rRNA genes, complete, and 18S rRNA gene, 5' end, clone pDm238, mRNA sequence. (639 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,107 Number of Sequences: 18737 Number of extensions: 11107 Number of successful extensions: 189 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 189 Number of HSP's gapped (non-prelim): 0 length of query: 639 length of database: 41,270,998 effective HSP length: 17 effective length of query: 622 effective length of database: 40,952,469 effective search space: 25472435718 effective search space used: 25472435718 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI293815|AI293815 LP07046.5prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP07046 5prime, mRNA sequence. (566 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31533-RA feature: mRNA loc=3R:complement(9980498..9983032);ID=... 866 0.0 >CG31533-RA feature: mRNA loc=3R:complement(9980498..9983032);ID=FBan0031533;gene_ id=FBgn0051533;gene_sym=CG31533;sym=CG31533;scaffold=AE0 03703;len=2535 Length = 2535 Score = 866 bits (437), Expect = 0.0 Identities = 437/437 (100%) Strand = Plus / Plus Query: 130 atgacggaatcggctaactttctattcgacttggtcatcaccaatctgaatatttttggc 189 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atgacggaatcggctaactttctattcgacttggtcatcaccaatctgaatatttttggc 60 Query: 190 gtaacgattgacgaacccgccaaactcctggtggaaaccaaggttgccggaaaatcagtg 249 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gtaacgattgacgaacccgccaaactcctggtggaaaccaaggttgccggaaaatcagtg 120 Query: 250 aaggtaacgtccagccgaatcaatgtcgaccagtttgtggccggcagggagtttgagctc 309 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aaggtaacgtccagccgaatcaatgtcgaccagtttgtggccggcagggagtttgagctc 180 Query: 310 ccaatggaagcatcgacattgcgtcaaagtctggaggagaagggtttgactttggcgggt 369 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 ccaatggaagcatcgacattgcgtcaaagtctggaggagaagggtttgactttggcgggt 240 Query: 370 gtttaccagggatcaactcttggcaaggccacggggaacttccctgtggagtttcttgac 429 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 gtttaccagggatcaactcttggcaaggccacggggaacttccctgtggagtttcttgac 300 Query: 430 aagatcagccccacgatgaacgatctggtgcacgaagatacactcgatttggttcgtcga 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 aagatcagccccacgatgaacgatctggtgcacgaagatacactcgatttggttcgtcga 360 Query: 490 gttgatgtagttggaacggtgagcgttctaatccgcttgaccgtaaagtgcgaggagcac 549 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 gttgatgtagttggaacggtgagcgttctaatccgcttgaccgtaaagtgcgaggagcac 420 Query: 550 ccagagcagaagccttc 566 ||||||||||||||||| Sbjct: 421 ccagagcagaagccttc 437 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,155 Number of Sequences: 18737 Number of extensions: 15155 Number of successful extensions: 267 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 266 Number of HSP's gapped (non-prelim): 1 length of query: 566 length of database: 41,270,998 effective HSP length: 17 effective length of query: 549 effective length of database: 40,952,469 effective search space: 22482905481 effective search space used: 22482905481 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI294077|AI294077 LP07372.5prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP07372 5prime similar to M21017: D.melanogaster 18S, 5.8S 2S and 28S rRNA genes, complete, and 18S rRNA gene, 5' end, clone pDm238, mRNA sequence. (591 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,858 Number of Sequences: 18737 Number of extensions: 10858 Number of successful extensions: 221 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 221 Number of HSP's gapped (non-prelim): 0 length of query: 591 length of database: 41,270,998 effective HSP length: 17 effective length of query: 574 effective length of database: 40,952,469 effective search space: 23506717206 effective search space used: 23506717206 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI294320|AI294320 LP07660.3prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP07660 3prime, mRNA sequence. (575 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 18,998 Number of Sequences: 18737 Number of extensions: 18998 Number of successful extensions: 451 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 451 Number of HSP's gapped (non-prelim): 0 length of query: 575 length of database: 41,270,998 effective HSP length: 17 effective length of query: 558 effective length of database: 40,952,469 effective search space: 22851477702 effective search space used: 22851477702 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI296177|AI296177 LP10010.5prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP10010 5prime, mRNA sequence. (593 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG1288-RA feature: mRNA loc=3R:complement(3033114..3033449,30335... 1080 0.0 >CG1288-RA feature: mRNA loc=3R:complement(3033114..3033449, 3033505..3034156);ID=FBan0001288;gene_id=FBgn0037484;gen e_sym=CG1288;sym=CG1288;scaffold=AE003672;len=988 Length = 988 Score = 1080 bits (545), Expect = 0.0 Identities = 575/585 (98%) Strand = Plus / Plus Query: 1 attcaaaatttccggtttaaaaccccaaggatacaaatttaagttaaaaattggcacatt 60 |||||||||||||| | ||||| | ||| ||||||||||| |||| | |||||||||| Sbjct: 32 attcaaaatttccgtataaaaacacaaagtatacaaatttagtttaagatttggcacatt 91 Query: 61 aaaattttttgctaatggatatttccaaggccgagagtcaaacgcccgccggagatcgtc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 92 aaaattttttgctaatggatatttccaaggccgagagtcaaacgcccgccggagatcgtc 151 Query: 121 gatctgcgagtcctgattatctgagaactctgctgcaggacatcctgtgtttcctggtcc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 152 gatctgcgagtcctgattatctgagaactctgctgcaggacatcctgtgtttcctggtcc 211 Query: 181 tgctctcggtggccttgctaattgtggctggcattttgtttgtggtggaggacgtaagcc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 212 tgctctcggtggccttgctaattgtggctggcattttgtttgtggtggaggacgtaagcc 271 Query: 241 ggctccagcagcagcaccaacaccagccgtaccaccaccaccatcatcgccacatgcgtc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 272 ggctccagcagcagcaccaacaccagccgtaccaccaccaccatcatcgccacatgcgtc 331 Query: 301 cggatcagatagccaatgaactaaaaggatcgccgatcgaggaggcaccgagggagcaag 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 332 cggatcagatagccaatgaactaaaaggatcgccgatcgaggaggcaccgagggagcaag 391 Query: 361 gtcaagtcttccgaccgcacacatggattcgattctttaactgcaggaacaaggtgccac 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 392 gtcaagtcttccgaccgcacacatggattcgattctttaactgcaggaacaaggtgccac 451 Query: 421 agcaacagcaggaaaaagttgaaagggaggcggttcagtttggcccaccaacgcaagacg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 452 agcaacagcaggaaaaagttgaaagggaggcggttcagtttggcccaccaacgcaagacg 511 Query: 481 atcaggcgcagcagatcccattagatgccgttcaaacttatcgccctgccatagaaccta 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 512 atcaggcgcagcagatcccattagatgccgttcaaacttatcgccctgccatagaaccta 571 Query: 541 tatcgctgcgctctggcggagattacatagatgaaacgatcaaca 585 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 572 tatcgctgcgctctggcggagattacatagatgaaacgatcaaca 616 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 37,554 Number of Sequences: 18737 Number of extensions: 37554 Number of successful extensions: 2232 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2231 Number of HSP's gapped (non-prelim): 1 length of query: 593 length of database: 41,270,998 effective HSP length: 17 effective length of query: 576 effective length of database: 40,952,469 effective search space: 23588622144 effective search space used: 23588622144 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI296613|AI296613 LP10575.3prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP10575 3prime, mRNA sequence. (561 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31281-RA feature: mRNA loc=3R:join(18782679..18782938,18783007... 1098 0.0 >CG31281-RA feature: mRNA loc=3R:join(18782679..18782938, 18783007..18783839);ID=FBan0031281;gene_id=FBgn0051281;g ene_sym=CG31281;sym=CG31281;scaffold=AE003741;len=1093 Length = 1093 Score = 1098 bits (554), Expect = 0.0 Identities = 561/562 (99%), Gaps = 1/562 (0%) Strand = Plus / Plus Query: 1 ccataaggaatcatacttttacatttattatataaccaaatctcaagatttctgcaatgg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31 ccataaggaatcatacttttacatttattatataaccaaatctcaagatttctgcaatgg 90 Query: 61 gtagcgttttaagtagatcagatcagcctagagattctgtcgcctacagaaacttcctga 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 91 gtagcgttttaagtagatcagatcagcctagagattctgtcgcctacagaaacttcctga 150 Query: 121 cagtctacaggaatcagcacaaacaaatgagttccaatgatgcacttttgagtgcatcac 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 151 cagtctacaggaatcagcacaaacaaatgagttccaatgatgcacttttgagtgcatcac 210 Query: 181 gtgaatggggaactttatcgcaggctcagcggaatcgatatgctaacatgaaggactccc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 211 gtgaatggggaactttatcgcaggctcagcggaatcgatatgctaacatgaaggactccc 270 Query: 241 ccaagcggggcacaaaaaacataacggagaatgcggctgctcgta-aaagattactaaaa 299 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 271 ccaagcggggcacaaaaaacataacggagaatgcggctgctcgtagaaagattactaaaa 330 Query: 300 agaattcccggtcgaagagaatttctcagcggcggattcaagataaggggtctgcttata 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 331 agaattcccggtcgaagagaatttctcagcggcggattcaagataaggggtctgcttata 390 Query: 360 agccgctaaccctcaacagatcttacgtaatacggaagagtttggttccctcaagaggct 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 391 agccgctaaccctcaacagatcttacgtaatacggaagagtttggttccctcaagaggct 450 Query: 420 ttctaaacttagtgcagttcttccaagagatccatagcgaaatgccaagatcgttggccg 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 451 ttctaaacttagtgcagttcttccaagagatccatagcgaaatgccaagatcgttggccg 510 Query: 480 tgaaagaggctgttagttcctggtgcgctatgaatgcggatcagcgtggcattttcatat 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 511 tgaaagaggctgttagttcctggtgcgctatgaatgcggatcagcgtggcattttcatat 570 Query: 540 cagacttatagtcatcatgtca 561 |||||||||||||||||||||| Sbjct: 571 cagacttatagtcatcatgtca 592 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9647 Number of Sequences: 18737 Number of extensions: 9647 Number of successful extensions: 177 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 175 Number of HSP's gapped (non-prelim): 1 length of query: 561 length of database: 41,270,998 effective HSP length: 17 effective length of query: 544 effective length of database: 40,952,469 effective search space: 22278143136 effective search space used: 22278143136 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI296748|AI296748 LP10814.5prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP10814 5, mRNA sequence. (647 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32690-RA feature: mRNA loc=X:join(9944346..9944399,9944465..99... 1283 0.0 >CG32690-RA feature: mRNA loc=X:join(9944346..9944399, 9944465..9945075);ID=FBan0032690;gene_id=FBgn0052690;gen e_sym=CG32690;sym=CG32690;scaffold=AE003449;len=665 Length = 665 Score = 1283 bits (647), Expect = 0.0 Identities = 647/647 (100%) Strand = Plus / Plus Query: 1 tcgcatttctcgaacaagttacagaaatgtatcaaaattttttcagttaaaaaactacat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tcgcatttctcgaacaagttacagaaatgtatcaaaattttttcagttaaaaaactacat 60 Query: 61 tgccgacgaaatgtcggcacaaggcttggttcctcgcccgaatccgaggaatccaaacca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 tgccgacgaaatgtcggcacaaggcttggttcctcgcccgaatccgaggaatccaaacca 120 Query: 121 ggaaacaacgttgataatgatcgacaaaattactcactactcatgaacacgatgctccat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 ggaaacaacgttgataatgatcgacaaaattactcactactcatgaacacgatgctccat 180 Query: 181 aactgccggacgagcaccaatcggcgacccagttccggaggatcatcaagctgcaaaacc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 aactgccggacgagcaccaatcggcgacccagttccggaggatcatcaagctgcaaaacc 240 Query: 241 catgacactagactgtaaaagtacacattgttacagcagcagtgcacaaggcttgattcc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 catgacactagactgtaaaagtacacattgttacagcagcagtgcacaaggcttgattcc 300 Query: 301 tcgcccgaatccgaggaatctaagccaggaaacgacgtttgatcatgattcgccacgtgt 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 tcgcccgaatccgaggaatctaagccaggaaacgacgtttgatcatgattcgccacgtgt 360 Query: 361 gggactagatttttcactacctatgaacacgatgctttctttatacgacactggatggta 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 gggactagatttttcactacctatgaacacgatgctttctttatacgacactggatggta 420 Query: 421 acacgatggtaacacgaattgatactgcgttgatttggatcgttgaacacagttacatac 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 acacgatggtaacacgaattgatactgcgttgatttggatcgttgaacacagttacatac 480 Query: 481 gttacattttgcacgttttctattgcgatttacaattagttttgccagttcacacaatct 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 gttacattttgcacgttttctattgcgatttacaattagttttgccagttcacacaatct 540 Query: 541 cctttgattattgtaagccaattaatactacttacagtgacaatactaaaatacagctgt 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 cctttgattattgtaagccaattaatactacttacagtgacaatactaaaatacagctgt 600 Query: 601 gtatgaaagtggacaatacacaaaaccatacactacaactaaaacaa 647 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 601 gtatgaaagtggacaatacacaaaaccatacactacaactaaaacaa 647 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,595 Number of Sequences: 18737 Number of extensions: 11595 Number of successful extensions: 212 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 207 Number of HSP's gapped (non-prelim): 1 length of query: 647 length of database: 41,270,998 effective HSP length: 17 effective length of query: 630 effective length of database: 40,952,469 effective search space: 25800055470 effective search space used: 25800055470 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI297549|AI297549 LP11873.5prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP11873 5prime, mRNA sequence. (556 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31538-RA feature: mRNA loc=3R:complement(1101391..1103554);ID=... 1102 0.0 >CG31538-RA feature: mRNA loc=3R:complement(1101391..1103554);ID=FBan0031538;gene_ id=FBgn0051538;gene_sym=CG31538;sym=CG31538;scaffold=AE0 03603;len=2164 Length = 2164 Score = 1102 bits (556), Expect = 0.0 Identities = 556/556 (100%) Strand = Plus / Plus Query: 1 agctctccaaaatagaaaattcgaatttatttattcagtgttttgttggtcttacgagtc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 91 agctctccaaaatagaaaattcgaatttatttattcagtgttttgttggtcttacgagtc 150 Query: 61 cgtgaaatcgagttctttagtccgtgaagaaacgtgcttcgttttcgcaggtttttgcta 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 151 cgtgaaatcgagttctttagtccgtgaagaaacgtgcttcgttttcgcaggtttttgcta 210 Query: 121 aattgttcgtgtatccattggttcacattatgagtactcatcagtatagcctggggaggc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 211 aattgttcgtgtatccattggttcacattatgagtactcatcagtatagcctggggaggc 270 Query: 181 tggcccgccgaggcttcagcctgcggatgaatccgctggccggcacactgcaaaggcttt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 271 tggcccgccgaggcttcagcctgcggatgaatccgctggccggcacactgcaaaggcttt 330 Query: 241 accacacccgtagcaggccatgtgtggcccagagtgtgagccaggtgggtgaacggtcca 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 331 accacacccgtagcaggccatgtgtggcccagagtgtgagccaggtgggtgaacggtcca 390 Query: 301 agccaacgttgcagccctacgacttcgaccgaagccgggtgcgtaaaattgccggcgaga 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 391 agccaacgttgcagccctacgacttcgaccgaagccgggtgcgtaaaattgccggcgaga 450 Query: 361 ggaagacgctggtcgaccaggtgcggggcatgagcacaagcctgggacatgccaagttgg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 451 ggaagacgctggtcgaccaggtgcggggcatgagcacaagcctgggacatgccaagttgg 510 Query: 421 tgccccaaaagatgtacggcaagacgaggctgttctcctccggaagcaccctctacagtc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 511 tgccccaaaagatgtacggcaagacgaggctgttctcctccggaagcaccctctacagtc 570 Query: 481 gcttgcagcatctggaacagcagaacgaggaatattcgagtcgagagtcccagccgacgc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 571 gcttgcagcatctggaacagcagaacgaggaatattcgagtcgagagtcccagccgacgc 630 Query: 541 acaccacagcctcatt 556 |||||||||||||||| Sbjct: 631 acaccacagcctcatt 646 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,932 Number of Sequences: 18737 Number of extensions: 11932 Number of successful extensions: 193 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 192 Number of HSP's gapped (non-prelim): 1 length of query: 556 length of database: 41,270,998 effective HSP length: 17 effective length of query: 539 effective length of database: 40,952,469 effective search space: 22073380791 effective search space used: 22073380791 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI297610|AI297610 LP11945.5prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP11945 5 similar to U62892: RfaBp FBgn0016724 PID:g1511646 SPTREMBL:Q94907, mRNA sequence. (595 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value RfaBp-RA feature: mRNA loc=4:join(1084380..1084490,1084552..1084... 1114 0.0 >RfaBp-RA feature: mRNA loc=4:join(1084380..1084490,1084552..1084651, 1085324..1085353,1085408..1092573,1092629..1092849, 1092907..1095025,1095084..1095204, 1095260..1095672);ID=FBan0011064;gene_id=FBgn0016724;gene_ sym=RfaBp;sym=CG11064;scaffold=AE003846;len=10281 Length = 10281 Score = 1114 bits (562), Expect = 0.0 Identities = 576/583 (98%) Strand = Plus / Minus Query: 13 gatattaagtttttattaatttttcgttttacttagtttnnnnnnngatttttcctcacg 72 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 10281 gatattaagtttttattaatttttcgttttacttagtttaaaaaaagatttttcctcacg 10222 Query: 73 aagggattcgataaaacatgtaagcccagtttaggcagattttgcctttttgttcgcaac 132 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10221 aagggattcgataaaacatgtaagcccagtttaggcagattttgcctttttgttcgcaac 10162 Query: 133 aaatgttgatgacttaatgacgcacttatgttggccgtgcaatccatgaatcggaagaca 192 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10161 aaatgttgatgacttaatgacgcacttatgttggccgtgcaatccatgaatcggaagaca 10102 Query: 193 gcgacagtcactgacgatttccgtcttaaagagagtatctgccagcgatgatgtaatctg 252 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10101 gcgacagtcactgacgatttccgtcttaaagagagtatctgccagcgatgatgtaatctg 10042 Query: 253 attcaacattttcttttggtccgaagcttttaatttttcaaagttttgtgtggcaaacac 312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10041 attcaacattttcttttggtccgaagcttttaatttttcaaagttttgtgtggcaaacac 9982 Query: 313 ccagccaccgttattaaggacaaagtcaatgcccatgtcgttatcgaattgcagcttagt 372 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9981 ccagccaccgttattaaggacaaagtcaatgcccatgtcgttatcgaattgcagcttagt 9922 Query: 373 ccgttttttgctgtctttcccatctacagtagccaccaatcgagaattgaagccaattag 432 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9921 ccgttttttgctgtctttcccatctacagtagccaccaatcgagaattgaagccaattag 9862 Query: 433 tttttcgcttaacactccttctaatgagagcccctttactggtgcaataagatgaataag 492 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9861 tttttcgcttaacactccttctaatgagagcccctttactggtgcaataagatgaataag 9802 Query: 493 tgcaccatcaaacttagtgatggatccagttaactgagctcgaacaaatttccaccaatt 552 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9801 tgcaccatcaaacttagtgatggatccagttaactgagctcgaacaaatttccaccaatt 9742 Query: 553 cttatattctaaagaatcacttcgcacaccgataatgcttttt 595 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9741 cttatattctaaagaatcacttcgcacaccgataatgcttttt 9699 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,264 Number of Sequences: 18737 Number of extensions: 11264 Number of successful extensions: 247 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 244 Number of HSP's gapped (non-prelim): 2 length of query: 595 length of database: 41,270,998 effective HSP length: 17 effective length of query: 578 effective length of database: 40,952,469 effective search space: 23670527082 effective search space used: 23670527082 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI455188|AI455188 LD21673.3prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD21673 3prime similar to AF051548: Drosophila melanogaster poly(ADP-ribose) polymerase (PARP) gene, exon 6 and complete cds, mRNA sequence. (728 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,228 Number of Sequences: 18737 Number of extensions: 15228 Number of successful extensions: 290 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 290 Number of HSP's gapped (non-prelim): 0 length of query: 728 length of database: 41,270,998 effective HSP length: 17 effective length of query: 711 effective length of database: 40,952,469 effective search space: 29117205459 effective search space used: 29117205459 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI455480|AI455480 LD24460.3prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD24460 3, mRNA sequence. (569 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG5978-RA feature: mRNA loc=3L:complement(8580741..8581068,85811... 1120 0.0 >CG5978-RA feature: mRNA loc=3L:complement(8580741..8581068,8581121..8581644, 8581787..8582259,8582318..8582397, 8582465..8582600);ID=FBan0005978;gene_id=FBgn0035916;gene _sym=CG5978;sym=CG5978;scaffold=AE003554;len=1541 Length = 1541 Score = 1120 bits (565), Expect = 0.0 Identities = 568/569 (99%) Strand = Plus / Minus Query: 1 aaaattaattcgtttattaatgacatacaaattataagtcatgtaaaaaagtgaaaatgc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1533 aaaattaattcgtttattaatgacatacaaattataagtcatgtaaaaaagtgaaaatgc 1474 Query: 61 gtgtacttattggacttcctgtaagggtgcgtttccaagattggggctaactaaagtata 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1473 gtgtacttattggacttcctgtaagggtgcgtttccaagattggggctaactaaagtata 1414 Query: 121 gttgattgcttggttctttcagttgttaaactaactagggggctttgcaagcatttgggc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1413 gttgattgcttggttctttcagttgttaaactaactagggggctttgcaagcatttgggc 1354 Query: 181 acaaggatatatttctggaggaatgctacgccaatgatccggcatgagcaatcacaacat 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1353 acaaggatatatttctggaggaatgctacgccaatgatccggcatgagcaatcacaacat 1294 Query: 241 taatgtcaattggcggatagttttgcaagagtttcacattcgaggcaaagtcgttttcca 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1293 taatgtcaattggcggatagttttgcaagagtttcacattcgaggcaaagtcgttttcca 1234 Query: 301 aaattgcttccttttggattaatatcattgaacagcatatttttatcagaaaatcaaatc 360 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1233 aaattgcttccctttggattaatatcattgaacagcatatttttatcagaaaatcaaatc 1174 Query: 361 gctgttcgtccgcaaacacggaatcccaaatgcgcagtacatctggcagtggaaactcct 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1173 gctgttcgtccgcaaacacggaatcccaaatgcgcagtacatctggcagtggaaactcct 1114 Query: 421 gcgacaggagcagtgtgagccacctgaagctgtaatactgcggatgcagctcttggctcc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1113 gcgacaggagcagtgtgagccacctgaagctgtaatactgcggatgcagctcttggctcc 1054 Query: 481 tgagtagctcgtaaatgcttaggtcctttgatttcagcatattcgatagcctggccatca 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1053 tgagtagctcgtaaatgcttaggtcctttgatttcagcatattcgatagcctggccatca 994 Query: 541 tgaacttgatgccgccttctgcgtcgtct 569 ||||||||||||||||||||||||||||| Sbjct: 993 tgaacttgatgccgccttctgcgtcgtct 965 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,106 Number of Sequences: 18737 Number of extensions: 12106 Number of successful extensions: 226 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 225 Number of HSP's gapped (non-prelim): 1 length of query: 569 length of database: 41,270,998 effective HSP length: 17 effective length of query: 552 effective length of database: 40,952,469 effective search space: 22605762888 effective search space used: 22605762888 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI455545|AI455545 LD24839.3prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD24839 3 similar to L29015: Drosophila melanogaster dif mRNA, complete cds, mRNA sequence. (515 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG15141-RA feature: mRNA loc=2L:join(17388740..17389701,17390878... 1005 0.0 Dif-RB feature: mRNA loc=2L:complement(17391027..17392415,173933... 1005 0.0 Dif-RA feature: mRNA loc=2L:complement(17391027..17392415,173933... 1005 0.0 >CG15141-RA feature: mRNA loc=2L:join(17388740..17389701, 17390878..17391588);ID=FBan0015141;gene_id=FBgn0032635;ge ne_sym=CG15141;sym=CG15141;scaffold=AE003655;len=1673 Length = 1673 Score = 1005 bits (507), Expect = 0.0 Identities = 513/515 (99%) Strand = Plus / Minus Query: 1 aaatactagtgtacatatatttcataaaatatatcggaaattaaccaattagagctacat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1667 aaatactagtgtacatatatttcataaaatatatcggaaattaaccaattagagctacat 1608 Query: 61 gtaaaaaggtctcaatccaaaatgaacttcaacacaaaacctgtcttatataattctatt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1607 gtaaaaaggtctcaatccaaaatgaacttcaacacaaaacctgtcttatataattctatt 1548 Query: 121 ttaccgcaatgtacataaatttaatgagggaaatgcgaatctcattgcccgatgccttgt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1547 ttaccgcaatgtacataaatttaatgagggaaatgcgaatctcattgcccgatgccttgt 1488 Query: 181 tacgacttttcgttattgacaaaagtgaattgaaaatgattattgtttaaataaaatata 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1487 tacgacttttcgttattgacaaaagtgaattgaaaatgattattgtttaaataaaatata 1428 Query: 241 actttagaatttacatgatgtatgtatgtatgtttcgctttcatgggggaatgtgggtaa 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1427 actttagaatttacatgatgtatgtatgtatgtttcgctttcatgggggaatgtgggtaa 1368 Query: 301 tactacagtaatataaagtgctaactgtttagcgacagaaatagggctgacccaggttgg 360 ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1367 tactagagtaatatagagtgctaactgtttagcgacagaaatagggctgacccaggttgg 1308 Query: 361 cattgttctcattgcgcatgccggcaaagaaccgattgatatcctcctcggtcactacct 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1307 cattgttctcattgcgcatgccggcaaagaaccgattgatatcctcctcggtcactacct 1248 Query: 421 tcttgctggcggcgaatgcctgcaggtattcctttagcttgtccttcatgcgattgtatt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1247 tcttgctggcggcgaatgcctgcaggtattcctttagcttgtccttcatgcgattgtatt 1188 Query: 481 cggtaatcgcatcgatttgctgtgtccggtcaatg 515 ||||||||||||||||||||||||||||||||||| Sbjct: 1187 cggtaatcgcatcgatttgctgtgtccggtcaatg 1153 >Dif-RB feature: mRNA loc=2L:complement(17391027..17392415,17393364..17393471, 17395654..17395729,17396075..17396457,17396571..17397161, 17398149..17398196, 17406091..17406278);ID=FBan0006794;gene_id=FBgn0011274;ge ne_sym=Dif;sym=CG6794;scaffold=AE003655;len=2783 Length = 2783 Score = 1005 bits (507), Expect = 0.0 Identities = 513/515 (99%) Strand = Plus / Plus Query: 1 aaatactagtgtacatatatttcataaaatatatcggaaattaaccaattagagctacat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2228 aaatactagtgtacatatatttcataaaatatatcggaaattaaccaattagagctacat 2287 Query: 61 gtaaaaaggtctcaatccaaaatgaacttcaacacaaaacctgtcttatataattctatt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2288 gtaaaaaggtctcaatccaaaatgaacttcaacacaaaacctgtcttatataattctatt 2347 Query: 121 ttaccgcaatgtacataaatttaatgagggaaatgcgaatctcattgcccgatgccttgt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2348 ttaccgcaatgtacataaatttaatgagggaaatgcgaatctcattgcccgatgccttgt 2407 Query: 181 tacgacttttcgttattgacaaaagtgaattgaaaatgattattgtttaaataaaatata 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2408 tacgacttttcgttattgacaaaagtgaattgaaaatgattattgtttaaataaaatata 2467 Query: 241 actttagaatttacatgatgtatgtatgtatgtttcgctttcatgggggaatgtgggtaa 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2468 actttagaatttacatgatgtatgtatgtatgtttcgctttcatgggggaatgtgggtaa 2527 Query: 301 tactacagtaatataaagtgctaactgtttagcgacagaaatagggctgacccaggttgg 360 ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2528 tactagagtaatatagagtgctaactgtttagcgacagaaatagggctgacccaggttgg 2587 Query: 361 cattgttctcattgcgcatgccggcaaagaaccgattgatatcctcctcggtcactacct 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2588 cattgttctcattgcgcatgccggcaaagaaccgattgatatcctcctcggtcactacct 2647 Query: 421 tcttgctggcggcgaatgcctgcaggtattcctttagcttgtccttcatgcgattgtatt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2648 tcttgctggcggcgaatgcctgcaggtattcctttagcttgtccttcatgcgattgtatt 2707 Query: 481 cggtaatcgcatcgatttgctgtgtccggtcaatg 515 ||||||||||||||||||||||||||||||||||| Sbjct: 2708 cggtaatcgcatcgatttgctgtgtccggtcaatg 2742 >Dif-RA feature: mRNA loc=2L:complement(17391027..17392415,17393364..17393471, 17395654..17395729,17396075..17396457,17396571..17397161, 17398149..17398196, 17405739..17406278);ID=FBan0006794;gene_id=FBgn0011274;ge ne_sym=Dif;sym=CG6794;scaffold=AE003655;len=3135 Length = 3135 Score = 1005 bits (507), Expect = 0.0 Identities = 513/515 (99%) Strand = Plus / Plus Query: 1 aaatactagtgtacatatatttcataaaatatatcggaaattaaccaattagagctacat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2580 aaatactagtgtacatatatttcataaaatatatcggaaattaaccaattagagctacat 2639 Query: 61 gtaaaaaggtctcaatccaaaatgaacttcaacacaaaacctgtcttatataattctatt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2640 gtaaaaaggtctcaatccaaaatgaacttcaacacaaaacctgtcttatataattctatt 2699 Query: 121 ttaccgcaatgtacataaatttaatgagggaaatgcgaatctcattgcccgatgccttgt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2700 ttaccgcaatgtacataaatttaatgagggaaatgcgaatctcattgcccgatgccttgt 2759 Query: 181 tacgacttttcgttattgacaaaagtgaattgaaaatgattattgtttaaataaaatata 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2760 tacgacttttcgttattgacaaaagtgaattgaaaatgattattgtttaaataaaatata 2819 Query: 241 actttagaatttacatgatgtatgtatgtatgtttcgctttcatgggggaatgtgggtaa 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2820 actttagaatttacatgatgtatgtatgtatgtttcgctttcatgggggaatgtgggtaa 2879 Query: 301 tactacagtaatataaagtgctaactgtttagcgacagaaatagggctgacccaggttgg 360 ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2880 tactagagtaatatagagtgctaactgtttagcgacagaaatagggctgacccaggttgg 2939 Query: 361 cattgttctcattgcgcatgccggcaaagaaccgattgatatcctcctcggtcactacct 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2940 cattgttctcattgcgcatgccggcaaagaaccgattgatatcctcctcggtcactacct 2999 Query: 421 tcttgctggcggcgaatgcctgcaggtattcctttagcttgtccttcatgcgattgtatt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3000 tcttgctggcggcgaatgcctgcaggtattcctttagcttgtccttcatgcgattgtatt 3059 Query: 481 cggtaatcgcatcgatttgctgtgtccggtcaatg 515 ||||||||||||||||||||||||||||||||||| Sbjct: 3060 cggtaatcgcatcgatttgctgtgtccggtcaatg 3094 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,637 Number of Sequences: 18737 Number of extensions: 13637 Number of successful extensions: 619 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 616 Number of HSP's gapped (non-prelim): 3 length of query: 515 length of database: 41,270,998 effective HSP length: 17 effective length of query: 498 effective length of database: 40,952,469 effective search space: 20394329562 effective search space used: 20394329562 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI455565|AI455565 LD24941.3prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD24941 3prime, mRNA sequence. (566 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Tpr2-RB feature: mRNA loc=2L:join(16474850..16475235,16483580..1... 1039 0.0 Tpr2-RA feature: mRNA loc=2L:join(16469626..16470135,16483580..1... 1039 0.0 >Tpr2-RB feature: mRNA loc=2L:join(16474850..16475235,16483580..16484032, 16484092..16484936, 16485013..16485436);ID=FBan0004599;gene_id=FBgn0032586;ge ne_sym=Tpr2;sym=CG4599;scaffold=AE003651;len=2108 Length = 2108 Score = 1039 bits (524), Expect = 0.0 Identities = 554/566 (97%), Gaps = 1/566 (0%) Strand = Plus / Minus Query: 1 atatgtatatttctgtttatttaacacaaatctcccatgatttattaatgttgccgnnnn 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2100 atatgtatatttctgtttatttaacacaaatctcccatgatttattaatgttgccgaaaa 2041 Query: 61 nnnnnntccaagaaagaacatttaaaaatgtgaacttacactggaaatttagttgcatta 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2040 aaaaa-tccaagaaagaacatttaaaaatgtgaacttacactggaaatttagttgcatta 1982 Query: 121 ttttgatttaaaatattttttcaaataacttggcatatattcattcgttaacataatcaa 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1981 ttttgatttagaatattttttcaaataacttggcatatattcattcgttaacataatcaa 1922 Query: 181 aatgtggtattttcttgctttttggaaaagaaatatgtaaaagagttcaaaatttgtgcg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1921 aatgtggtattttcttgctttttggaaaagaaatatgtaaaagagttcaaaatttgtgcg 1862 Query: 241 ctgctgtatgttggtttcggatgaggcagaaagtatgggattgagatggtcttcttctct 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1861 ctgctgtatgttggtttcggatgaggcagaaagtatgggattgagatggtcttcttctct 1802 Query: 301 gtggtggtgaacaacactcgttgggatcctagaactcaaagttgaacgatgaattattcc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1801 gtggtggtgaacaacactcgttgggatcctagaactcaaagttgaacgatgaattattcc 1742 Query: 361 ggccaccgccgttgaattggaagaatgtgcggaacatttgattcggatcgaagtcggctt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1741 ggccaccgccgttgaattggaagaatgtgcggaacatttgattcggatcgaagtcggctt 1682 Query: 421 gctcctgctcctcgatatcctggccgctgtcgtancgcgacttcttgtgagcatccgaca 480 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 1681 gctcctgctcctcgatatcctggccgctgtcgtagcgcgacttcttgtgagcatccgaca 1622 Query: 481 gtatggcgtacgcctcgcccacctccttgaacttgagctcctcctccttgcgctcctcgg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1621 gtatggcgtacgcctcgcccacctccttgaacttgagctcctcctccttgcgctcctcgg 1562 Query: 541 cactgctgtttgcgtgtcgatccgga 566 |||||||||||||||||||||||||| Sbjct: 1561 cactgctgtttgcgtgtcgatccgga 1536 >Tpr2-RA feature: mRNA loc=2L:join(16469626..16470135,16483580..16484032, 16484092..16484936, 16485013..16485436);ID=FBan0004599;gene_id=FBgn0032586;ge ne_sym=Tpr2;sym=CG4599;scaffold=AE003651;len=2232 Length = 2232 Score = 1039 bits (524), Expect = 0.0 Identities = 554/566 (97%), Gaps = 1/566 (0%) Strand = Plus / Minus Query: 1 atatgtatatttctgtttatttaacacaaatctcccatgatttattaatgttgccgnnnn 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2224 atatgtatatttctgtttatttaacacaaatctcccatgatttattaatgttgccgaaaa 2165 Query: 61 nnnnnntccaagaaagaacatttaaaaatgtgaacttacactggaaatttagttgcatta 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2164 aaaaa-tccaagaaagaacatttaaaaatgtgaacttacactggaaatttagttgcatta 2106 Query: 121 ttttgatttaaaatattttttcaaataacttggcatatattcattcgttaacataatcaa 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2105 ttttgatttagaatattttttcaaataacttggcatatattcattcgttaacataatcaa 2046 Query: 181 aatgtggtattttcttgctttttggaaaagaaatatgtaaaagagttcaaaatttgtgcg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2045 aatgtggtattttcttgctttttggaaaagaaatatgtaaaagagttcaaaatttgtgcg 1986 Query: 241 ctgctgtatgttggtttcggatgaggcagaaagtatgggattgagatggtcttcttctct 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1985 ctgctgtatgttggtttcggatgaggcagaaagtatgggattgagatggtcttcttctct 1926 Query: 301 gtggtggtgaacaacactcgttgggatcctagaactcaaagttgaacgatgaattattcc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1925 gtggtggtgaacaacactcgttgggatcctagaactcaaagttgaacgatgaattattcc 1866 Query: 361 ggccaccgccgttgaattggaagaatgtgcggaacatttgattcggatcgaagtcggctt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1865 ggccaccgccgttgaattggaagaatgtgcggaacatttgattcggatcgaagtcggctt 1806 Query: 421 gctcctgctcctcgatatcctggccgctgtcgtancgcgacttcttgtgagcatccgaca 480 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 1805 gctcctgctcctcgatatcctggccgctgtcgtagcgcgacttcttgtgagcatccgaca 1746 Query: 481 gtatggcgtacgcctcgcccacctccttgaacttgagctcctcctccttgcgctcctcgg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1745 gtatggcgtacgcctcgcccacctccttgaacttgagctcctcctccttgcgctcctcgg 1686 Query: 541 cactgctgtttgcgtgtcgatccgga 566 |||||||||||||||||||||||||| Sbjct: 1685 cactgctgtttgcgtgtcgatccgga 1660 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 20,041 Number of Sequences: 18737 Number of extensions: 20041 Number of successful extensions: 592 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 588 Number of HSP's gapped (non-prelim): 4 length of query: 566 length of database: 41,270,998 effective HSP length: 17 effective length of query: 549 effective length of database: 40,952,469 effective search space: 22482905481 effective search space used: 22482905481 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI456601|AI456601 LD36673.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD36673 5 similar to Fer1HCH: FBan0002216 'ligand binding or carrier' located on: 3R 99F4-99F4;: 04/10/2001, mRNA sequence. (516 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Fer1HCH-RE feature: mRNA loc=3R:complement(26200658..26201684,26... 1023 0.0 Fer1HCH-RB feature: mRNA loc=3R:complement(26200658..26201344,26... 1023 0.0 Fer1HCH-RD feature: mRNA loc=3R:complement(26200658..26201344,26... 694 0.0 Fer1HCH-RC feature: mRNA loc=3R:complement(26200658..26201344,26... 694 0.0 Fer1HCH-RA feature: mRNA loc=3R:complement(26200656..26201344,26... 694 0.0 >Fer1HCH-RE feature: mRNA loc=3R:complement(26200658..26201684,26202552..26202638, 26202863..26203212);ID=FBan0002216;gene_id=FBgn0015222;g ene_sym=Fer1HCH;sym=CG2216;scaffold=AE003773;len=1464 Length = 1464 Score = 1023 bits (516), Expect = 0.0 Identities = 516/516 (100%) Strand = Plus / Plus Query: 1 atttgataaatttacttcttagtaagtggggattatctgactaggaaacccgactttata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atttgataaatttacttcttagtaagtggggattatctgactaggaaacccgactttata 60 Query: 61 caaagtatacccatattgaggacgtgtgtatcacattgagtgcggcaattatcgggaata 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 caaagtatacccatattgaggacgtgtgtatcacattgagtgcggcaattatcgggaata 120 Query: 121 ttcaattatcagccatttaaacggttaacaaagaacgggcgacatgttgaaaagataaca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 ttcaattatcagccatttaaacggttaacaaagaacgggcgacatgttgaaaagataaca 180 Query: 181 gtgcacactctcccatcactcacacacacacgaagaaaaaccgagagcgcgcgcgcttaa 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 gtgcacactctcccatcactcacacacacacgaagaaaaaccgagagcgcgcgcgcttaa 240 Query: 241 aagtgttttgtgcgccgttcggagcgacagttcgctttcgagttcgctaaaacacaacgt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 aagtgttttgtgcgccgttcggagcgacagttcgctttcgagttcgctaaaacacaacgt 300 Query: 301 agaaaggccttagctccactgaaaaatcagattaaagctgtcagcagaagactacgttcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 agaaaggccttagctccactgaaaaatcagattaaagctgtcagcagaagactacgttcg 360 Query: 361 acgatcaaagatggtgaaactaattgctagcctgctcctgttggccgtggtggcccaggc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 acgatcaaagatggtgaaactaattgctagcctgctcctgttggccgtggtggcccaggc 420 Query: 421 ctatggagatttcaagtgctccctggctgttcctgagattaccaaggactgggtggacat 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 ctatggagatttcaagtgctccctggctgttcctgagattaccaaggactgggtggacat 480 Query: 481 gaaggatgcctgcataaagggcatgcgcaatcagat 516 |||||||||||||||||||||||||||||||||||| Sbjct: 481 gaaggatgcctgcataaagggcatgcgcaatcagat 516 >Fer1HCH-RB feature: mRNA loc=3R:complement(26200658..26201344,26201407..26201684, 26202552..26202638, 26202863..26203212);ID=FBan0002216;gene_id=FBgn0015222;g ene_sym=Fer1HCH;sym=CG2216;scaffold=AE003773;len=1402 Length = 1402 Score = 1023 bits (516), Expect = 0.0 Identities = 516/516 (100%) Strand = Plus / Plus Query: 1 atttgataaatttacttcttagtaagtggggattatctgactaggaaacccgactttata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atttgataaatttacttcttagtaagtggggattatctgactaggaaacccgactttata 60 Query: 61 caaagtatacccatattgaggacgtgtgtatcacattgagtgcggcaattatcgggaata 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 caaagtatacccatattgaggacgtgtgtatcacattgagtgcggcaattatcgggaata 120 Query: 121 ttcaattatcagccatttaaacggttaacaaagaacgggcgacatgttgaaaagataaca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 ttcaattatcagccatttaaacggttaacaaagaacgggcgacatgttgaaaagataaca 180 Query: 181 gtgcacactctcccatcactcacacacacacgaagaaaaaccgagagcgcgcgcgcttaa 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 gtgcacactctcccatcactcacacacacacgaagaaaaaccgagagcgcgcgcgcttaa 240 Query: 241 aagtgttttgtgcgccgttcggagcgacagttcgctttcgagttcgctaaaacacaacgt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 aagtgttttgtgcgccgttcggagcgacagttcgctttcgagttcgctaaaacacaacgt 300 Query: 301 agaaaggccttagctccactgaaaaatcagattaaagctgtcagcagaagactacgttcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 agaaaggccttagctccactgaaaaatcagattaaagctgtcagcagaagactacgttcg 360 Query: 361 acgatcaaagatggtgaaactaattgctagcctgctcctgttggccgtggtggcccaggc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 acgatcaaagatggtgaaactaattgctagcctgctcctgttggccgtggtggcccaggc 420 Query: 421 ctatggagatttcaagtgctccctggctgttcctgagattaccaaggactgggtggacat 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 ctatggagatttcaagtgctccctggctgttcctgagattaccaaggactgggtggacat 480 Query: 481 gaaggatgcctgcataaagggcatgcgcaatcagat 516 |||||||||||||||||||||||||||||||||||| Sbjct: 481 gaaggatgcctgcataaagggcatgcgcaatcagat 516 >Fer1HCH-RD feature: mRNA loc=3R:complement(26200658..26201344,26201407..26201684, 26202552..26202690, 26202863..26203212);ID=FBan0002216;gene_id=FBgn0015222;g ene_sym=Fer1HCH;sym=CG2216;scaffold=AE003773;len=1454 Length = 1454 Score = 694 bits (350), Expect = 0.0 Identities = 350/350 (100%) Strand = Plus / Plus Query: 1 atttgataaatttacttcttagtaagtggggattatctgactaggaaacccgactttata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atttgataaatttacttcttagtaagtggggattatctgactaggaaacccgactttata 60 Query: 61 caaagtatacccatattgaggacgtgtgtatcacattgagtgcggcaattatcgggaata 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 caaagtatacccatattgaggacgtgtgtatcacattgagtgcggcaattatcgggaata 120 Query: 121 ttcaattatcagccatttaaacggttaacaaagaacgggcgacatgttgaaaagataaca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 ttcaattatcagccatttaaacggttaacaaagaacgggcgacatgttgaaaagataaca 180 Query: 181 gtgcacactctcccatcactcacacacacacgaagaaaaaccgagagcgcgcgcgcttaa 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 gtgcacactctcccatcactcacacacacacgaagaaaaaccgagagcgcgcgcgcttaa 240 Query: 241 aagtgttttgtgcgccgttcggagcgacagttcgctttcgagttcgctaaaacacaacgt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 aagtgttttgtgcgccgttcggagcgacagttcgctttcgagttcgctaaaacacaacgt 300 Query: 301 agaaaggccttagctccactgaaaaatcagattaaagctgtcagcagaag 350 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 agaaaggccttagctccactgaaaaatcagattaaagctgtcagcagaag 350 >Fer1HCH-RC feature: mRNA loc=3R:complement(26200658..26201344,26201407..26201684, 26202552..26202730, 26202863..26203212);ID=FBan0002216;gene_id=FBgn0015222;g ene_sym=Fer1HCH;sym=CG2216;scaffold=AE003773;len=1494 Length = 1494 Score = 694 bits (350), Expect = 0.0 Identities = 350/350 (100%) Strand = Plus / Plus Query: 1 atttgataaatttacttcttagtaagtggggattatctgactaggaaacccgactttata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atttgataaatttacttcttagtaagtggggattatctgactaggaaacccgactttata 60 Query: 61 caaagtatacccatattgaggacgtgtgtatcacattgagtgcggcaattatcgggaata 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 caaagtatacccatattgaggacgtgtgtatcacattgagtgcggcaattatcgggaata 120 Query: 121 ttcaattatcagccatttaaacggttaacaaagaacgggcgacatgttgaaaagataaca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 ttcaattatcagccatttaaacggttaacaaagaacgggcgacatgttgaaaagataaca 180 Query: 181 gtgcacactctcccatcactcacacacacacgaagaaaaaccgagagcgcgcgcgcttaa 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 gtgcacactctcccatcactcacacacacacgaagaaaaaccgagagcgcgcgcgcttaa 240 Query: 241 aagtgttttgtgcgccgttcggagcgacagttcgctttcgagttcgctaaaacacaacgt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 aagtgttttgtgcgccgttcggagcgacagttcgctttcgagttcgctaaaacacaacgt 300 Query: 301 agaaaggccttagctccactgaaaaatcagattaaagctgtcagcagaag 350 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 agaaaggccttagctccactgaaaaatcagattaaagctgtcagcagaag 350 >Fer1HCH-RA feature: mRNA loc=3R:complement(26200656..26201344,26201407..26201684, 26202552..26203217);ID=FBan0002216;gene_id=FBgn0015222;g ene_sym=Fer1HCH;sym=CG2216;scaffold=AE003773;len=1633 Length = 1633 Score = 694 bits (350), Expect = 0.0 Identities = 350/350 (100%) Strand = Plus / Plus Query: 1 atttgataaatttacttcttagtaagtggggattatctgactaggaaacccgactttata 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6 atttgataaatttacttcttagtaagtggggattatctgactaggaaacccgactttata 65 Query: 61 caaagtatacccatattgaggacgtgtgtatcacattgagtgcggcaattatcgggaata 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 66 caaagtatacccatattgaggacgtgtgtatcacattgagtgcggcaattatcgggaata 125 Query: 121 ttcaattatcagccatttaaacggttaacaaagaacgggcgacatgttgaaaagataaca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 126 ttcaattatcagccatttaaacggttaacaaagaacgggcgacatgttgaaaagataaca 185 Query: 181 gtgcacactctcccatcactcacacacacacgaagaaaaaccgagagcgcgcgcgcttaa 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 186 gtgcacactctcccatcactcacacacacacgaagaaaaaccgagagcgcgcgcgcttaa 245 Query: 241 aagtgttttgtgcgccgttcggagcgacagttcgctttcgagttcgctaaaacacaacgt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 246 aagtgttttgtgcgccgttcggagcgacagttcgctttcgagttcgctaaaacacaacgt 305 Query: 301 agaaaggccttagctccactgaaaaatcagattaaagctgtcagcagaag 350 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 306 agaaaggccttagctccactgaaaaatcagattaaagctgtcagcagaag 355 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,960 Number of Sequences: 18737 Number of extensions: 12960 Number of successful extensions: 302 Number of sequences better than 1.0e-100: 5 Number of HSP's better than 0.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 294 Number of HSP's gapped (non-prelim): 8 length of query: 516 length of database: 41,270,998 effective HSP length: 17 effective length of query: 499 effective length of database: 40,952,469 effective search space: 20435282031 effective search space used: 20435282031 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI456813|AI456813 LD36950.3prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD36950 3prime, mRNA sequence. (522 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value trio-RF feature: mRNA loc=3L:complement(977837..978920,978980..9... 1027 0.0 trio-RE feature: mRNA loc=3L:complement(976607..978920,978980..9... 1027 0.0 trio-RD feature: mRNA loc=3L:complement(976607..978920,978980..9... 1027 0.0 trio-RC feature: mRNA loc=3L:complement(976607..978920,978980..9... 1027 0.0 trio-RB feature: mRNA loc=3L:complement(976607..978920,978980..9... 1027 0.0 trio-RA feature: mRNA loc=3L:complement(976607..978920,978980..9... 1027 0.0 >trio-RF feature: mRNA loc=3L:complement(977837..978920,978980..979360, 979453..979642,979708..979824,979889..980004, 980076..980171,980246..980311,984025..984282, 984357..984450, 987846..988404);ID=FBan0018214;gene_id=FBgn0024277;gene_s ym=trio;sym=CG18214;scaffold=AE003470;len=2961 Length = 2961 Score = 1027 bits (518), Expect = 0.0 Identities = 521/522 (99%) Strand = Plus / Minus Query: 1 ctggttttgattacgtttaaagcttacatattttatttgtaaattataaagtacaaataa 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2894 ctggttttgattacgtttaaagcttacatattttatttgtaaattataaagtacaaataa 2835 Query: 61 gctttgcattgcattcataaactaaagttaagcttaaattatttcacgaagttgtcacac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2834 gctttgcattgcattcataaactaaagttaagcttaaattatttcacgaagttgtcacac 2775 Query: 121 tcgaacgagtgccattacacaaatctctgctttagttttgcaaagcaaatccagtaactc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2774 tcgaacgagtgccattacacaaatctctgctttagttttgcaaagcaaatccagtaactc 2715 Query: 181 aagtataaactatgattaacatttagcagtttaactaaaactatgtaccaaactaaggct 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2714 aagtataaactatgattaacatttagcagtttaactaaaactatgtaccaaactaaggct 2655 Query: 241 agaatagttatactcttactctctgcgttcaatgcgaataaaacgagtacgaaacgaaaa 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2654 agaatagttatactcttactctctgcgttcaatgcgaataaaacgagtacgaaacgaaaa 2595 Query: 301 cgaaatgtaaattgcttttgattctgagtagttctcggctgcggatcgttagtaaatcag 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2594 cgaaatgtaaattgcttttgattctgagtagttctcggctgcggatcgttagtaaatcag 2535 Query: 361 actcggaaaagtaaaactaagagcaaaggagtctaaataagttaaaaatgcacacaatgt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2534 actcggaaaagtaaaactaagagcaaaggagtctaaataagttaaaaatgcacacaatgt 2475 Query: 421 caaaggtaatcttgagcatataatactttgcgtttcatacacacaaatccggaatagaaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2474 caaaggtaatcttgagcatataatactttgcgtttcatacacacaaatccggaatagaaa 2415 Query: 481 acagaaactatacgaacagaaaggcggcccaactaaaatcta 522 ||| |||||||||||||||||||||||||||||||||||||| Sbjct: 2414 acaaaaactatacgaacagaaaggcggcccaactaaaatcta 2373 >trio-RE feature: mRNA loc=3L:complement(976607..978920,978980..979360, 979453..979642,979708..979824,979889..980004, 980076..980171,980246..980311, 981007..981196);ID=FBan0018214;gene_id=FBgn0024277;gene_s ym=trio;sym=CG18214;scaffold=AE003470;len=3470 Length = 3470 Score = 1027 bits (518), Expect = 0.0 Identities = 521/522 (99%) Strand = Plus / Minus Query: 1 ctggttttgattacgtttaaagcttacatattttatttgtaaattataaagtacaaataa 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2173 ctggttttgattacgtttaaagcttacatattttatttgtaaattataaagtacaaataa 2114 Query: 61 gctttgcattgcattcataaactaaagttaagcttaaattatttcacgaagttgtcacac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2113 gctttgcattgcattcataaactaaagttaagcttaaattatttcacgaagttgtcacac 2054 Query: 121 tcgaacgagtgccattacacaaatctctgctttagttttgcaaagcaaatccagtaactc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2053 tcgaacgagtgccattacacaaatctctgctttagttttgcaaagcaaatccagtaactc 1994 Query: 181 aagtataaactatgattaacatttagcagtttaactaaaactatgtaccaaactaaggct 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1993 aagtataaactatgattaacatttagcagtttaactaaaactatgtaccaaactaaggct 1934 Query: 241 agaatagttatactcttactctctgcgttcaatgcgaataaaacgagtacgaaacgaaaa 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1933 agaatagttatactcttactctctgcgttcaatgcgaataaaacgagtacgaaacgaaaa 1874 Query: 301 cgaaatgtaaattgcttttgattctgagtagttctcggctgcggatcgttagtaaatcag 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1873 cgaaatgtaaattgcttttgattctgagtagttctcggctgcggatcgttagtaaatcag 1814 Query: 361 actcggaaaagtaaaactaagagcaaaggagtctaaataagttaaaaatgcacacaatgt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1813 actcggaaaagtaaaactaagagcaaaggagtctaaataagttaaaaatgcacacaatgt 1754 Query: 421 caaaggtaatcttgagcatataatactttgcgtttcatacacacaaatccggaatagaaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1753 caaaggtaatcttgagcatataatactttgcgtttcatacacacaaatccggaatagaaa 1694 Query: 481 acagaaactatacgaacagaaaggcggcccaactaaaatcta 522 ||| |||||||||||||||||||||||||||||||||||||| Sbjct: 1693 acaaaaactatacgaacagaaaggcggcccaactaaaatcta 1652 >trio-RD feature: mRNA loc=3L:complement(976607..978920,978980..979360, 979453..979642,979708..979824,979889..980004, 980076..980171,980246..980311,984025..984282, 984357..984450,989951..990008,990074..990368, 999191..999901, 1003307..1003518);ID=FBan0018214;gene_id=FBgn0024277;gene _sym=trio;sym=CG18214;scaffold=AE003470;len=4908 Length = 4908 Score = 1027 bits (518), Expect = 0.0 Identities = 521/522 (99%) Strand = Plus / Minus Query: 1 ctggttttgattacgtttaaagcttacatattttatttgtaaattataaagtacaaataa 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3611 ctggttttgattacgtttaaagcttacatattttatttgtaaattataaagtacaaataa 3552 Query: 61 gctttgcattgcattcataaactaaagttaagcttaaattatttcacgaagttgtcacac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3551 gctttgcattgcattcataaactaaagttaagcttaaattatttcacgaagttgtcacac 3492 Query: 121 tcgaacgagtgccattacacaaatctctgctttagttttgcaaagcaaatccagtaactc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3491 tcgaacgagtgccattacacaaatctctgctttagttttgcaaagcaaatccagtaactc 3432 Query: 181 aagtataaactatgattaacatttagcagtttaactaaaactatgtaccaaactaaggct 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3431 aagtataaactatgattaacatttagcagtttaactaaaactatgtaccaaactaaggct 3372 Query: 241 agaatagttatactcttactctctgcgttcaatgcgaataaaacgagtacgaaacgaaaa 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3371 agaatagttatactcttactctctgcgttcaatgcgaataaaacgagtacgaaacgaaaa 3312 Query: 301 cgaaatgtaaattgcttttgattctgagtagttctcggctgcggatcgttagtaaatcag 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3311 cgaaatgtaaattgcttttgattctgagtagttctcggctgcggatcgttagtaaatcag 3252 Query: 361 actcggaaaagtaaaactaagagcaaaggagtctaaataagttaaaaatgcacacaatgt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3251 actcggaaaagtaaaactaagagcaaaggagtctaaataagttaaaaatgcacacaatgt 3192 Query: 421 caaaggtaatcttgagcatataatactttgcgtttcatacacacaaatccggaatagaaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3191 caaaggtaatcttgagcatataatactttgcgtttcatacacacaaatccggaatagaaa 3132 Query: 481 acagaaactatacgaacagaaaggcggcccaactaaaatcta 522 ||| |||||||||||||||||||||||||||||||||||||| Sbjct: 3131 acaaaaactatacgaacagaaaggcggcccaactaaaatcta 3090 >trio-RC feature: mRNA loc=3L:complement(976607..978920,978980..979360, 979453..979642,979708..979824,979889..980004, 980076..980171,980246..980311,984025..984282, 984357..984450,989951..990008,990074..990368, 1004833..1005036,1005095..1006975,1007035..1009140, 1009709..1010252,1014279..1014694, 1015127..1015504);ID=FBan0018214;gene_id=FBgn0024277;gene _sym=trio;sym=CG18214;scaffold=AE003470;len=9514 Length = 9514 Score = 1027 bits (518), Expect = 0.0 Identities = 521/522 (99%) Strand = Plus / Minus Query: 1 ctggttttgattacgtttaaagcttacatattttatttgtaaattataaagtacaaataa 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8217 ctggttttgattacgtttaaagcttacatattttatttgtaaattataaagtacaaataa 8158 Query: 61 gctttgcattgcattcataaactaaagttaagcttaaattatttcacgaagttgtcacac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8157 gctttgcattgcattcataaactaaagttaagcttaaattatttcacgaagttgtcacac 8098 Query: 121 tcgaacgagtgccattacacaaatctctgctttagttttgcaaagcaaatccagtaactc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8097 tcgaacgagtgccattacacaaatctctgctttagttttgcaaagcaaatccagtaactc 8038 Query: 181 aagtataaactatgattaacatttagcagtttaactaaaactatgtaccaaactaaggct 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8037 aagtataaactatgattaacatttagcagtttaactaaaactatgtaccaaactaaggct 7978 Query: 241 agaatagttatactcttactctctgcgttcaatgcgaataaaacgagtacgaaacgaaaa 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7977 agaatagttatactcttactctctgcgttcaatgcgaataaaacgagtacgaaacgaaaa 7918 Query: 301 cgaaatgtaaattgcttttgattctgagtagttctcggctgcggatcgttagtaaatcag 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7917 cgaaatgtaaattgcttttgattctgagtagttctcggctgcggatcgttagtaaatcag 7858 Query: 361 actcggaaaagtaaaactaagagcaaaggagtctaaataagttaaaaatgcacacaatgt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7857 actcggaaaagtaaaactaagagcaaaggagtctaaataagttaaaaatgcacacaatgt 7798 Query: 421 caaaggtaatcttgagcatataatactttgcgtttcatacacacaaatccggaatagaaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7797 caaaggtaatcttgagcatataatactttgcgtttcatacacacaaatccggaatagaaa 7738 Query: 481 acagaaactatacgaacagaaaggcggcccaactaaaatcta 522 ||| |||||||||||||||||||||||||||||||||||||| Sbjct: 7737 acaaaaactatacgaacagaaaggcggcccaactaaaatcta 7696 >trio-RB feature: mRNA loc=3L:complement(976607..978920,978980..979360, 979453..979642,979708..979824,979889..980004, 980076..980171,980246..980311,984025..984282, 984357..984450, 987846..988388);ID=FBan0018214;gene_id=FBgn0024277;gene_s ym=trio;sym=CG18214;scaffold=AE003470;len=4175 Length = 4175 Score = 1027 bits (518), Expect = 0.0 Identities = 521/522 (99%) Strand = Plus / Minus Query: 1 ctggttttgattacgtttaaagcttacatattttatttgtaaattataaagtacaaataa 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2878 ctggttttgattacgtttaaagcttacatattttatttgtaaattataaagtacaaataa 2819 Query: 61 gctttgcattgcattcataaactaaagttaagcttaaattatttcacgaagttgtcacac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2818 gctttgcattgcattcataaactaaagttaagcttaaattatttcacgaagttgtcacac 2759 Query: 121 tcgaacgagtgccattacacaaatctctgctttagttttgcaaagcaaatccagtaactc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2758 tcgaacgagtgccattacacaaatctctgctttagttttgcaaagcaaatccagtaactc 2699 Query: 181 aagtataaactatgattaacatttagcagtttaactaaaactatgtaccaaactaaggct 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2698 aagtataaactatgattaacatttagcagtttaactaaaactatgtaccaaactaaggct 2639 Query: 241 agaatagttatactcttactctctgcgttcaatgcgaataaaacgagtacgaaacgaaaa 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2638 agaatagttatactcttactctctgcgttcaatgcgaataaaacgagtacgaaacgaaaa 2579 Query: 301 cgaaatgtaaattgcttttgattctgagtagttctcggctgcggatcgttagtaaatcag 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2578 cgaaatgtaaattgcttttgattctgagtagttctcggctgcggatcgttagtaaatcag 2519 Query: 361 actcggaaaagtaaaactaagagcaaaggagtctaaataagttaaaaatgcacacaatgt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2518 actcggaaaagtaaaactaagagcaaaggagtctaaataagttaaaaatgcacacaatgt 2459 Query: 421 caaaggtaatcttgagcatataatactttgcgtttcatacacacaaatccggaatagaaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2458 caaaggtaatcttgagcatataatactttgcgtttcatacacacaaatccggaatagaaa 2399 Query: 481 acagaaactatacgaacagaaaggcggcccaactaaaatcta 522 ||| |||||||||||||||||||||||||||||||||||||| Sbjct: 2398 acaaaaactatacgaacagaaaggcggcccaactaaaatcta 2357 >trio-RA feature: mRNA loc=3L:complement(976607..978920,978980..979360, 979453..979642,979708..979824,979889..980004, 980076..980171,980246..980311,984025..984282, 984357..984450,989951..990008,990074..990368, 1004833..1005036,1005095..1006975,1007035..1009140, 1009709..1010252,1014279..1014694, 1015392..1015504);ID=FBan0018214;gene_id=FBgn0024277;gene _sym=trio;sym=CG18214;scaffold=AE003470;len=9249 Length = 9249 Score = 1027 bits (518), Expect = 0.0 Identities = 521/522 (99%) Strand = Plus / Minus Query: 1 ctggttttgattacgtttaaagcttacatattttatttgtaaattataaagtacaaataa 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7952 ctggttttgattacgtttaaagcttacatattttatttgtaaattataaagtacaaataa 7893 Query: 61 gctttgcattgcattcataaactaaagttaagcttaaattatttcacgaagttgtcacac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7892 gctttgcattgcattcataaactaaagttaagcttaaattatttcacgaagttgtcacac 7833 Query: 121 tcgaacgagtgccattacacaaatctctgctttagttttgcaaagcaaatccagtaactc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7832 tcgaacgagtgccattacacaaatctctgctttagttttgcaaagcaaatccagtaactc 7773 Query: 181 aagtataaactatgattaacatttagcagtttaactaaaactatgtaccaaactaaggct 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7772 aagtataaactatgattaacatttagcagtttaactaaaactatgtaccaaactaaggct 7713 Query: 241 agaatagttatactcttactctctgcgttcaatgcgaataaaacgagtacgaaacgaaaa 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7712 agaatagttatactcttactctctgcgttcaatgcgaataaaacgagtacgaaacgaaaa 7653 Query: 301 cgaaatgtaaattgcttttgattctgagtagttctcggctgcggatcgttagtaaatcag 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7652 cgaaatgtaaattgcttttgattctgagtagttctcggctgcggatcgttagtaaatcag 7593 Query: 361 actcggaaaagtaaaactaagagcaaaggagtctaaataagttaaaaatgcacacaatgt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7592 actcggaaaagtaaaactaagagcaaaggagtctaaataagttaaaaatgcacacaatgt 7533 Query: 421 caaaggtaatcttgagcatataatactttgcgtttcatacacacaaatccggaatagaaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7532 caaaggtaatcttgagcatataatactttgcgtttcatacacacaaatccggaatagaaa 7473 Query: 481 acagaaactatacgaacagaaaggcggcccaactaaaatcta 522 ||| |||||||||||||||||||||||||||||||||||||| Sbjct: 7472 acaaaaactatacgaacagaaaggcggcccaactaaaatcta 7431 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,825 Number of Sequences: 18737 Number of extensions: 11825 Number of successful extensions: 352 Number of sequences better than 1.0e-100: 6 Number of HSP's better than 0.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 346 Number of HSP's gapped (non-prelim): 6 length of query: 522 length of database: 41,270,998 effective HSP length: 17 effective length of query: 505 effective length of database: 40,952,469 effective search space: 20680996845 effective search space used: 20680996845 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI512469|AI512469 LD44353.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD44353 5 similar to CG4913: FBan0004913 located on: 3R 88E12-88E13;: 04/10/2001, mRNA sequence. (656 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value ear-RA feature: mRNA loc=3R:join(11146502..11146658,11147124..11... 480 e-135 >ear-RA feature: mRNA loc=3R:join(11146502..11146658,11147124..11147344, 11147416..11150215);ID=FBan0004913;gene_id=FBgn0026441;ge ne_sym=ear;sym=CG4913;scaffold=AE003708;len=3178 Length = 3178 Score = 480 bits (242), Expect = e-135 Identities = 242/242 (100%) Strand = Plus / Minus Query: 415 tgtgggcccctcgggccaacgtaacttacgatctagctagggggattgaggctgtgtgcg 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3178 tgtgggcccctcgggccaacgtaacttacgatctagctagggggattgaggctgtgtgcg 3119 Query: 475 agccaagttcatttgcatttggcttgcatcgttaactttaagattaactttaatgatttg 534 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3118 agccaagttcatttgcatttggcttgcatcgttaactttaagattaactttaatgatttg 3059 Query: 535 gttatgtgcatgagggggttgtgcatcgtctagctgtagagagccgggccagtcgcggag 594 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3058 gttatgtgcatgagggggttgtgcatcgtctagctgtagagagccgggccagtcgcggag 2999 Query: 595 gtcagggagtgtcacgacaccgacgtcgccaggaactcctgcagtcgctgcactgtgccg 654 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2998 gtcagggagtgtcacgacaccgacgtcgccaggaactcctgcagtcgctgcactgtgccg 2939 Query: 655 cg 656 || Sbjct: 2938 cg 2937 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,355 Number of Sequences: 18737 Number of extensions: 13355 Number of successful extensions: 298 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 297 Number of HSP's gapped (non-prelim): 1 length of query: 656 length of database: 41,270,998 effective HSP length: 17 effective length of query: 639 effective length of database: 40,952,469 effective search space: 26168627691 effective search space used: 26168627691 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI512832|AI512832 LD44893.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD44893 5prime, mRNA sequence. (567 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG7414-RA feature: mRNA loc=3L:join(21742097..21742355,21742528.... 1120 0.0 >CG7414-RA feature: mRNA loc=3L:join(21742097..21742355,21742528..21743692, 21743753..21744030, 21744372..21745136);ID=FBan0007414;gene_id=FBgn0037135;ge ne_sym=CG7414;sym=CG7414;scaffold=AE003595;len=2467 Length = 2467 Score = 1120 bits (565), Expect = 0.0 Identities = 565/565 (100%) Strand = Plus / Minus Query: 1 catctttattacttggtagcacaatttggtacataaatttgttgtttacgggagttactg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2434 catctttattacttggtagcacaatttggtacataaatttgttgtttacgggagttactg 2375 Query: 61 tacgttttgccgaaattagttgggaaatcacaatagtagaaaaatgttttaacttgaaac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2374 tacgttttgccgaaattagttgggaaatcacaatagtagaaaaatgttttaacttgaaac 2315 Query: 121 ttatgcggcaaatgggccacaaactgagcgtaaaacagcaggaaggggacgaacaggagg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2314 ttatgcggcaaatgggccacaaactgagcgtaaaacagcaggaaggggacgaacaggagg 2255 Query: 181 tgagtagagtggagtggagctgagaagaggtgctgtatcacaatcacaagagcaattact 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2254 tgagtagagtggagtggagctgagaagaggtgctgtatcacaatcacaagagcaattact 2195 Query: 241 cctcgcatccctcagccttctcgccgccgtcgtcatcgtcaacgccattaacgtcctcct 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2194 cctcgcatccctcagccttctcgccgccgtcgtcatcgtcaacgccattaacgtcctcct 2135 Query: 301 aggcagactgcttgagagccttgagctcatccaggtactgtgcttccatcttaatcttgt 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2134 aggcagactgcttgagagccttgagctcatccaggtactgtgcttccatcttaatcttgt 2075 Query: 361 tcagttggttcagctccagattctcgccctggctgcgtcggaccttcagcttcttaatgt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2074 tcagttggttcagctccagattctcgccctggctgcgtcggaccttcagcttcttaatgt 2015 Query: 421 ccgacagcttcttggcgacgctgcgaatcttgcgctccttatcgctgatgtgctggccat 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2014 ccgacagcttcttggcgacgctgcgaatcttgcgctccttatcgctgatgtgctggccat 1955 Query: 481 tgggatgaccctgtccatacgaattcggtggctgatcggcagcgttatctggctggtact 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1954 tgggatgaccctgtccatacgaattcggtggctgatcggcagcgttatctggctggtact 1895 Query: 541 tctgtctgggagtatgctgcggctt 565 ||||||||||||||||||||||||| Sbjct: 1894 tctgtctgggagtatgctgcggctt 1870 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,921 Number of Sequences: 18737 Number of extensions: 13921 Number of successful extensions: 323 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 322 Number of HSP's gapped (non-prelim): 1 length of query: 567 length of database: 41,270,998 effective HSP length: 17 effective length of query: 550 effective length of database: 40,952,469 effective search space: 22523857950 effective search space used: 22523857950 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI515941|AI515941 LD41653.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD41653 5prime similar to M21017: D.melanogaster 18S, 5.8S 2S and 28S rRNA genes, complete, and 18S rRNA gene, 5' end, clone pDm238, mRNA sequence. (661 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,809 Number of Sequences: 18737 Number of extensions: 11809 Number of successful extensions: 204 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 204 Number of HSP's gapped (non-prelim): 0 length of query: 661 length of database: 41,270,998 effective HSP length: 17 effective length of query: 644 effective length of database: 40,952,469 effective search space: 26373390036 effective search space used: 26373390036 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI516121|AI516121 LD41878.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD41878 5prime, mRNA sequence. (535 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG10053-RA feature: mRNA loc=3R:join(3072982..3073037,3073107..3... 1053 0.0 >CG10053-RA feature: mRNA loc=3R:join(3072982..3073037, 3073107..3073888);ID=FBan0010053;gene_id=FBgn0037490;gen e_sym=CG10053;sym=CG10053;scaffold=AE003672;len=838 Length = 838 Score = 1053 bits (531), Expect = 0.0 Identities = 534/535 (99%) Strand = Plus / Plus Query: 1 aggaggaggattatatgtccgacaaattcctggttggtctccaagatgtccgaccgagtt 60 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 20 aggaggaggattatatgtccgacaaattcctggttggtctgcaagatgtccgaccgagtt 79 Query: 61 tggtgcacaatcgcggcagaaagcggcagattgaagtcgagtccaagaaagatgagctga 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 80 tggtgcacaatcgcggcagaaagcggcagattgaagtcgagtccaagaaagatgagctga 139 Query: 121 agaagcgccaacgggagacagcagcttcttccgggaacgtagacaatgttcgccttcaac 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 140 agaagcgccaacgggagacagcagcttcttccgggaacgtagacaatgttcgccttcaac 199 Query: 181 agtccctcaacaaaccaatttccgccgacaacaaaggattccagctactggccaagatgg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 200 agtccctcaacaaaccaatttccgccgacaacaaaggattccagctactggccaagatgg 259 Query: 241 gctacaaagccggttctgggttgggcataacttcggatgctcgtactgaacccgtgggga 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 260 gctacaaagccggttctgggttgggcataacttcggatgctcgtactgaacccgtgggga 319 Query: 301 taactataaagagcggtcgtggaggacttgggcgcgaggcagccgttgcagagttggccc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 320 taactataaagagcggtcgtggaggacttgggcgcgaggcagccgttgcagagttggccc 379 Query: 361 tcaagcggcagaagttgcggagggcacatctcctaaacaaggccggcattaaaagcgacg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 380 tcaagcggcagaagttgcggagggcacatctcctaaacaaggccggcattaaaagcgacg 439 Query: 421 aggaagtcagtacagaggcttataggaggcgcgcgacccataaagcggaggagcgaaaat 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 440 aggaagtcagtacagaggcttataggaggcgcgcgacccataaagcggaggagcgaaaat 499 Query: 481 tacagtatgacataaaacggtgccagcagacctgcgaatcgttggatcttaagtc 535 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 500 tacagtatgacataaaacggtgccagcagacctgcgaatcgttggatcttaagtc 554 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,677 Number of Sequences: 18737 Number of extensions: 11677 Number of successful extensions: 229 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 228 Number of HSP's gapped (non-prelim): 1 length of query: 535 length of database: 41,270,998 effective HSP length: 17 effective length of query: 518 effective length of database: 40,952,469 effective search space: 21213378942 effective search space used: 21213378942 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI518164|AI518164 LD37601.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD37601 5 similar to CG4532: FBan0004532 located on: X 6D1-6D2;: 04/10/2001, mRNA sequence. (524 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG4532-RE feature: mRNA loc=X:join(6545761..6545851,6546054..654... 1039 0.0 CG4532-RD feature: mRNA loc=X:join(6545504..6545625,6546054..654... 1039 0.0 CG4532-RC feature: mRNA loc=X:join(6545361..6545382,6546054..654... 1039 0.0 CG4532-RB feature: mRNA loc=X:join(6544273..6544553,6546054..654... 1039 0.0 CG4532-RA feature: mRNA loc=X:join(6544063..6544142,6546054..654... 1039 0.0 >CG4532-RE feature: mRNA loc=X:join(6545761..6545851,6546054..6546594, 6546994..6547180,6547257..6547813,6547872..6548024, 6549188..6549371,6549440..6549513,6549861..6550033, 6550103..6551014,6551078..6551423,6551493..6551628, 6551693..6551793, 6551856..6553897);ID=FBan0004532;gene_id=FBgn0029903;gene _sym=CG4532;sym=CG4532;scaffold=AE003438;len=5497 Length = 5497 Score = 1039 bits (524), Expect = 0.0 Identities = 524/524 (100%) Strand = Plus / Plus Query: 1 gagaccactggctacaagacagaactggtggccggcgagtggctaaatggcagcaaccag 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1410 gagaccactggctacaagacagaactggtggccggcgagtggctaaatggcagcaaccag 1469 Query: 61 gcggtgcccaagatgagccttgatcccgccaagcgtgagcatggcgatgagccaattatt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1470 gcggtgcccaagatgagccttgatcccgccaagcgtgagcatggcgatgagccaattatt 1529 Query: 121 ccacgtttgggtcccaagcccttctccagcaccacaggtgacgtttcgtttgacaaggtg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1530 ccacgtttgggtcccaagcccttctccagcaccacaggtgacgtttcgtttgacaaggtg 1589 Query: 181 ttcgccgttcccttggcaccgggatcccacgagaatatctcgaacgtgggtcaggacagc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1590 ttcgccgttcccttggcaccgggatcccacgagaatatctcgaacgtgggtcaggacagc 1649 Query: 241 ggagtggagatgacaccagctcagggagccaaaccggatctcattgtggaaatcgaaatt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1650 ggagtggagatgacaccagctcagggagccaaaccggatctcattgtggaaatcgaaatt 1709 Query: 301 aaaaagaaacacgaaagggaacctgctgtgtccggaaatggagtccagaagtcactgacc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1710 aaaaagaaacacgaaagggaacctgctgtgtccggaaatggagtccagaagtcactgacc 1769 Query: 361 acttcggagcgccgtaagatattcgagcagaactctgagtcatcggagaactcgacggag 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1770 acttcggagcgccgtaagatattcgagcagaactctgagtcatcggagaactcgacggag 1829 Query: 421 ggggaagatcgcacggatgcggatctgcgaagaaactgcacctccaggagcagctttgcc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1830 ggggaagatcgcacggatgcggatctgcgaagaaactgcacctccaggagcagctttgcc 1889 Query: 481 gagcgacggcgcatatacgagaatcgttccaagagtcaggtgga 524 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1890 gagcgacggcgcatatacgagaatcgttccaagagtcaggtgga 1933 >CG4532-RD feature: mRNA loc=X:join(6545504..6545625,6546054..6546594, 6546994..6547180,6547257..6547813,6547872..6548024, 6549188..6549371,6549440..6549513,6549861..6550033, 6550103..6551014,6551078..6551423,6551493..6551628, 6551693..6551793, 6551856..6553897);ID=FBan0004532;gene_id=FBgn0029903;gene _sym=CG4532;sym=CG4532;scaffold=AE003438;len=5528 Length = 5528 Score = 1039 bits (524), Expect = 0.0 Identities = 524/524 (100%) Strand = Plus / Plus Query: 1 gagaccactggctacaagacagaactggtggccggcgagtggctaaatggcagcaaccag 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1441 gagaccactggctacaagacagaactggtggccggcgagtggctaaatggcagcaaccag 1500 Query: 61 gcggtgcccaagatgagccttgatcccgccaagcgtgagcatggcgatgagccaattatt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1501 gcggtgcccaagatgagccttgatcccgccaagcgtgagcatggcgatgagccaattatt 1560 Query: 121 ccacgtttgggtcccaagcccttctccagcaccacaggtgacgtttcgtttgacaaggtg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1561 ccacgtttgggtcccaagcccttctccagcaccacaggtgacgtttcgtttgacaaggtg 1620 Query: 181 ttcgccgttcccttggcaccgggatcccacgagaatatctcgaacgtgggtcaggacagc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1621 ttcgccgttcccttggcaccgggatcccacgagaatatctcgaacgtgggtcaggacagc 1680 Query: 241 ggagtggagatgacaccagctcagggagccaaaccggatctcattgtggaaatcgaaatt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1681 ggagtggagatgacaccagctcagggagccaaaccggatctcattgtggaaatcgaaatt 1740 Query: 301 aaaaagaaacacgaaagggaacctgctgtgtccggaaatggagtccagaagtcactgacc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1741 aaaaagaaacacgaaagggaacctgctgtgtccggaaatggagtccagaagtcactgacc 1800 Query: 361 acttcggagcgccgtaagatattcgagcagaactctgagtcatcggagaactcgacggag 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1801 acttcggagcgccgtaagatattcgagcagaactctgagtcatcggagaactcgacggag 1860 Query: 421 ggggaagatcgcacggatgcggatctgcgaagaaactgcacctccaggagcagctttgcc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1861 ggggaagatcgcacggatgcggatctgcgaagaaactgcacctccaggagcagctttgcc 1920 Query: 481 gagcgacggcgcatatacgagaatcgttccaagagtcaggtgga 524 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1921 gagcgacggcgcatatacgagaatcgttccaagagtcaggtgga 1964 >CG4532-RC feature: mRNA loc=X:join(6545361..6545382,6546054..6546594, 6546994..6547180,6547257..6547813,6547872..6548024, 6549188..6549371,6549440..6549513,6549861..6550033, 6550103..6551014,6551078..6551423,6551493..6551628, 6551693..6551793, 6551856..6553897);ID=FBan0004532;gene_id=FBgn0029903;gene _sym=CG4532;sym=CG4532;scaffold=AE003438;len=5428 Length = 5428 Score = 1039 bits (524), Expect = 0.0 Identities = 524/524 (100%) Strand = Plus / Plus Query: 1 gagaccactggctacaagacagaactggtggccggcgagtggctaaatggcagcaaccag 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1341 gagaccactggctacaagacagaactggtggccggcgagtggctaaatggcagcaaccag 1400 Query: 61 gcggtgcccaagatgagccttgatcccgccaagcgtgagcatggcgatgagccaattatt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1401 gcggtgcccaagatgagccttgatcccgccaagcgtgagcatggcgatgagccaattatt 1460 Query: 121 ccacgtttgggtcccaagcccttctccagcaccacaggtgacgtttcgtttgacaaggtg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1461 ccacgtttgggtcccaagcccttctccagcaccacaggtgacgtttcgtttgacaaggtg 1520 Query: 181 ttcgccgttcccttggcaccgggatcccacgagaatatctcgaacgtgggtcaggacagc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1521 ttcgccgttcccttggcaccgggatcccacgagaatatctcgaacgtgggtcaggacagc 1580 Query: 241 ggagtggagatgacaccagctcagggagccaaaccggatctcattgtggaaatcgaaatt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1581 ggagtggagatgacaccagctcagggagccaaaccggatctcattgtggaaatcgaaatt 1640 Query: 301 aaaaagaaacacgaaagggaacctgctgtgtccggaaatggagtccagaagtcactgacc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1641 aaaaagaaacacgaaagggaacctgctgtgtccggaaatggagtccagaagtcactgacc 1700 Query: 361 acttcggagcgccgtaagatattcgagcagaactctgagtcatcggagaactcgacggag 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1701 acttcggagcgccgtaagatattcgagcagaactctgagtcatcggagaactcgacggag 1760 Query: 421 ggggaagatcgcacggatgcggatctgcgaagaaactgcacctccaggagcagctttgcc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1761 ggggaagatcgcacggatgcggatctgcgaagaaactgcacctccaggagcagctttgcc 1820 Query: 481 gagcgacggcgcatatacgagaatcgttccaagagtcaggtgga 524 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1821 gagcgacggcgcatatacgagaatcgttccaagagtcaggtgga 1864 >CG4532-RB feature: mRNA loc=X:join(6544273..6544553,6546054..6546594, 6546994..6547180,6547257..6547813,6547872..6548024, 6549188..6549371,6549440..6549513,6549861..6550033, 6550103..6551014,6551078..6551423,6551493..6551628, 6551693..6551793, 6551856..6553897);ID=FBan0004532;gene_id=FBgn0029903;gene _sym=CG4532;sym=CG4532;scaffold=AE003438;len=5687 Length = 5687 Score = 1039 bits (524), Expect = 0.0 Identities = 524/524 (100%) Strand = Plus / Plus Query: 1 gagaccactggctacaagacagaactggtggccggcgagtggctaaatggcagcaaccag 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1600 gagaccactggctacaagacagaactggtggccggcgagtggctaaatggcagcaaccag 1659 Query: 61 gcggtgcccaagatgagccttgatcccgccaagcgtgagcatggcgatgagccaattatt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1660 gcggtgcccaagatgagccttgatcccgccaagcgtgagcatggcgatgagccaattatt 1719 Query: 121 ccacgtttgggtcccaagcccttctccagcaccacaggtgacgtttcgtttgacaaggtg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1720 ccacgtttgggtcccaagcccttctccagcaccacaggtgacgtttcgtttgacaaggtg 1779 Query: 181 ttcgccgttcccttggcaccgggatcccacgagaatatctcgaacgtgggtcaggacagc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1780 ttcgccgttcccttggcaccgggatcccacgagaatatctcgaacgtgggtcaggacagc 1839 Query: 241 ggagtggagatgacaccagctcagggagccaaaccggatctcattgtggaaatcgaaatt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1840 ggagtggagatgacaccagctcagggagccaaaccggatctcattgtggaaatcgaaatt 1899 Query: 301 aaaaagaaacacgaaagggaacctgctgtgtccggaaatggagtccagaagtcactgacc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1900 aaaaagaaacacgaaagggaacctgctgtgtccggaaatggagtccagaagtcactgacc 1959 Query: 361 acttcggagcgccgtaagatattcgagcagaactctgagtcatcggagaactcgacggag 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1960 acttcggagcgccgtaagatattcgagcagaactctgagtcatcggagaactcgacggag 2019 Query: 421 ggggaagatcgcacggatgcggatctgcgaagaaactgcacctccaggagcagctttgcc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2020 ggggaagatcgcacggatgcggatctgcgaagaaactgcacctccaggagcagctttgcc 2079 Query: 481 gagcgacggcgcatatacgagaatcgttccaagagtcaggtgga 524 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2080 gagcgacggcgcatatacgagaatcgttccaagagtcaggtgga 2123 >CG4532-RA feature: mRNA loc=X:join(6544063..6544142,6546054..6546594, 6546994..6547180,6547257..6547813,6547872..6548024, 6549188..6549371,6549440..6549513,6549861..6550033, 6550103..6551014,6551078..6551423,6551493..6551628, 6551693..6551793, 6551856..6553897);ID=FBan0004532;gene_id=FBgn0029903;gene _sym=CG4532;sym=CG4532;scaffold=AE003438;len=5486 Length = 5486 Score = 1039 bits (524), Expect = 0.0 Identities = 524/524 (100%) Strand = Plus / Plus Query: 1 gagaccactggctacaagacagaactggtggccggcgagtggctaaatggcagcaaccag 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1399 gagaccactggctacaagacagaactggtggccggcgagtggctaaatggcagcaaccag 1458 Query: 61 gcggtgcccaagatgagccttgatcccgccaagcgtgagcatggcgatgagccaattatt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1459 gcggtgcccaagatgagccttgatcccgccaagcgtgagcatggcgatgagccaattatt 1518 Query: 121 ccacgtttgggtcccaagcccttctccagcaccacaggtgacgtttcgtttgacaaggtg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1519 ccacgtttgggtcccaagcccttctccagcaccacaggtgacgtttcgtttgacaaggtg 1578 Query: 181 ttcgccgttcccttggcaccgggatcccacgagaatatctcgaacgtgggtcaggacagc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1579 ttcgccgttcccttggcaccgggatcccacgagaatatctcgaacgtgggtcaggacagc 1638 Query: 241 ggagtggagatgacaccagctcagggagccaaaccggatctcattgtggaaatcgaaatt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1639 ggagtggagatgacaccagctcagggagccaaaccggatctcattgtggaaatcgaaatt 1698 Query: 301 aaaaagaaacacgaaagggaacctgctgtgtccggaaatggagtccagaagtcactgacc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1699 aaaaagaaacacgaaagggaacctgctgtgtccggaaatggagtccagaagtcactgacc 1758 Query: 361 acttcggagcgccgtaagatattcgagcagaactctgagtcatcggagaactcgacggag 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1759 acttcggagcgccgtaagatattcgagcagaactctgagtcatcggagaactcgacggag 1818 Query: 421 ggggaagatcgcacggatgcggatctgcgaagaaactgcacctccaggagcagctttgcc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1819 ggggaagatcgcacggatgcggatctgcgaagaaactgcacctccaggagcagctttgcc 1878 Query: 481 gagcgacggcgcatatacgagaatcgttccaagagtcaggtgga 524 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1879 gagcgacggcgcatatacgagaatcgttccaagagtcaggtgga 1922 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,307 Number of Sequences: 18737 Number of extensions: 13307 Number of successful extensions: 267 Number of sequences better than 1.0e-100: 5 Number of HSP's better than 0.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 262 Number of HSP's gapped (non-prelim): 5 length of query: 524 length of database: 41,270,998 effective HSP length: 17 effective length of query: 507 effective length of database: 40,952,469 effective search space: 20762901783 effective search space used: 20762901783 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI518653|AI518653 LD38280.3prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD38280 3prime, mRNA sequence. (443 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG9281-RC feature: mRNA loc=X:complement(15436820..15438078,1543... 753 0.0 CG9281-RB feature: mRNA loc=X:complement(15436820..15438078,1543... 753 0.0 >CG9281-RC feature: mRNA loc=X:complement(15436820..15438078,15438143..15438679, 15438747..15439252, 15439328..15440058);ID=FBan0009281;gene_id=FBgn0030672;ge ne_sym=CG9281;sym=CG9281;scaffold=AE003500;len=3033 Length = 3033 Score = 753 bits (380), Expect = 0.0 Identities = 422/440 (95%) Strand = Plus / Minus Query: 1 gtatatagtgggttggttgtatttataagttatagttctttctgcctgtccacttcgtaa 60 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2397 gtatatagttggttggttgtatttataagttatagttctttctgcctgtccacttcgtaa 2338 Query: 61 ttgtatatatttataattttataactttaattcgacacgtnnnnnnnnnnnnttcagcta 120 |||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 2337 ttgtatatatttataattttataactttaattcgacacgtaaaaagaaaaaattcagcta 2278 Query: 121 aaatttgtgtgttcctgttgagttgtcaacggttgtgttacgcatggttgtgattggata 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2277 aaatttgtgtgttcctgttgagttgtcaacggttgtgttacgcatggttgtgattggata 2218 Query: 181 ggtttggattgggtgttcggttcgttctagttttattgttgattattttactgggtggcc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 2217 ggtttggattgggtgttcggttcgttctagttttattgttgattattttactggttggcc 2158 Query: 241 gatcgaattgtgacttcactatagcgtatagtaaacgcaaaactaatttcgcacagaatg 300 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 2157 gatcgaattgtgacttcactatagcgtagagtaaacgcaaaactaatttcgcacagaatg 2098 Query: 301 gattgcagcgaacgggcagcccaatagccggatgtcgcccgccgcctattgaagagaagg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2097 gattgcagcgaacgggcagcccaatagccggatgtcgcccgccgcctattgaagagaagg 2038 Query: 361 gatagcggtctgaatgtcctttcggttgagggatgcgtttggttgtgagcttgggtgttt 420 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct: 2037 gatagcggtctgaatgtcctttcggttgagggatgcgtttggttgtgtgtttgggtgttt 1978 Query: 421 tggatgcgcgactgtttgtg 440 ||||||||||||||| |||| Sbjct: 1977 tggatgcgcgactgtgtgtg 1958 >CG9281-RB feature: mRNA loc=X:complement(15436820..15438078,15438143..15438679, 15438747..15439252,15439328..15439996, 15441320..15441612);ID=FBan0009281;gene_id=FBgn0030672;ge ne_sym=CG9281;sym=CG9281;scaffold=AE003500;len=3264 Length = 3264 Score = 753 bits (380), Expect = 0.0 Identities = 422/440 (95%) Strand = Plus / Minus Query: 1 gtatatagtgggttggttgtatttataagttatagttctttctgcctgtccacttcgtaa 60 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2628 gtatatagttggttggttgtatttataagttatagttctttctgcctgtccacttcgtaa 2569 Query: 61 ttgtatatatttataattttataactttaattcgacacgtnnnnnnnnnnnnttcagcta 120 |||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 2568 ttgtatatatttataattttataactttaattcgacacgtaaaaagaaaaaattcagcta 2509 Query: 121 aaatttgtgtgttcctgttgagttgtcaacggttgtgttacgcatggttgtgattggata 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2508 aaatttgtgtgttcctgttgagttgtcaacggttgtgttacgcatggttgtgattggata 2449 Query: 181 ggtttggattgggtgttcggttcgttctagttttattgttgattattttactgggtggcc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 2448 ggtttggattgggtgttcggttcgttctagttttattgttgattattttactggttggcc 2389 Query: 241 gatcgaattgtgacttcactatagcgtatagtaaacgcaaaactaatttcgcacagaatg 300 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 2388 gatcgaattgtgacttcactatagcgtagagtaaacgcaaaactaatttcgcacagaatg 2329 Query: 301 gattgcagcgaacgggcagcccaatagccggatgtcgcccgccgcctattgaagagaagg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2328 gattgcagcgaacgggcagcccaatagccggatgtcgcccgccgcctattgaagagaagg 2269 Query: 361 gatagcggtctgaatgtcctttcggttgagggatgcgtttggttgtgagcttgggtgttt 420 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct: 2268 gatagcggtctgaatgtcctttcggttgagggatgcgtttggttgtgtgtttgggtgttt 2209 Query: 421 tggatgcgcgactgtttgtg 440 ||||||||||||||| |||| Sbjct: 2208 tggatgcgcgactgtgtgtg 2189 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9511 Number of Sequences: 18737 Number of extensions: 9511 Number of successful extensions: 785 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 781 Number of HSP's gapped (non-prelim): 4 length of query: 443 length of database: 41,270,998 effective HSP length: 17 effective length of query: 426 effective length of database: 40,952,469 effective search space: 17445751794 effective search space used: 17445751794 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI519064|AI519064 LD38313.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD38313 5 similar to CG1866: FBan0001866 located on: 3R 98C3-98C3;: 04/10/2001, mRNA sequence. (541 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Moca-cyp-RA feature: mRNA loc=3R:join(24155426..24155826,2415646... 1072 0.0 Moca-cyp-RB feature: mRNA loc=3R:join(24155441..24155826,2415646... 924 0.0 >Moca-cyp-RA feature: mRNA loc=3R:join(24155426..24155826,24156460..24156547, 24157273..24157302,24157368..24157507, 24157567..24157714,24157771..24157897, 24157968..24158162, 24158223..24160255);ID=FBan0001866;gene_id=FBgn0039581;g ene_sym=Moca-cyp;sym=CG1866;scaffold=AE003765;len=3162 Length = 3162 Score = 1072 bits (541), Expect = 0.0 Identities = 541/541 (100%) Strand = Plus / Plus Query: 1 ccgacattgtgcaactcgaaaacggcgtgaaatacgtattaaacagcatttattggcaga 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 24 ccgacattgtgcaactcgaaaacggcgtgaaatacgtattaaacagcatttattggcaga 83 Query: 61 aatcggcgcatataatgacggtaaacaaacgcgacgcgggtgccacgcgaccgcggtgct 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 84 aatcggcgcatataatgacggtaaacaaacgcgacgcgggtgccacgcgaccgcggtgct 143 Query: 121 tctttgacatttccctgggcggcctgggcatgggccgcattgtcttcgagctcttcaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 144 tctttgacatttccctgggcggcctgggcatgggccgcattgtcttcgagctcttcaacg 203 Query: 181 atgtggcgcccaaaacggccgaaaatttccgcgcactctgcacgggcgaaaagggatttg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 204 atgtggcgcccaaaacggccgaaaatttccgcgcactctgcacgggcgaaaagggatttg 263 Query: 241 gcctaatcaccggcaagaagctgcagtacaagggtgtgatattccaccgggtggtcaagg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 264 gcctaatcaccggcaagaagctgcagtacaagggtgtgatattccaccgggtggtcaagg 323 Query: 301 acttcatggtccaggcgggcgacttctctgcgggcaacggcaccggcggcgagtccatct 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 324 acttcatggtccaggcgggcgacttctctgcgggcaacggcaccggcggcgagtccatct 383 Query: 361 acggcgggacgttcgaggatgagagcttcgaaaagaagcacgatcgtcccttcctgctgt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 384 acggcgggacgttcgaggatgagagcttcgaaaagaagcacgatcgtcccttcctgctgt 443 Query: 421 cgatggccaaccggggcaagaacacaaatggctcgcagttctttattacaacacagcctg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 444 cgatggccaaccggggcaagaacacaaatggctcgcagttctttattacaacacagcctg 503 Query: 481 cgccacatttggacaatatccatgttgtattcggccaagttatatccggtcaggagttgg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 504 cgccacatttggacaatatccatgttgtattcggccaagttatatccggtcaggagttgg 563 Query: 541 t 541 | Sbjct: 564 t 564 >Moca-cyp-RB feature: mRNA loc=3R:join(24155441..24155826,24156460..24156547, 24156715..24157302,24157368..24157507, 24157567..24157714,24157771..24157897, 24157968..24158162, 24158223..24160255);ID=FBan0001866;gene_id=FBgn0039581;g ene_sym=Moca-cyp;sym=CG1866;scaffold=AE003765;len=3705 Length = 3705 Score = 924 bits (466), Expect = 0.0 Identities = 466/466 (100%) Strand = Plus / Plus Query: 1 ccgacattgtgcaactcgaaaacggcgtgaaatacgtattaaacagcatttattggcaga 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9 ccgacattgtgcaactcgaaaacggcgtgaaatacgtattaaacagcatttattggcaga 68 Query: 61 aatcggcgcatataatgacggtaaacaaacgcgacgcgggtgccacgcgaccgcggtgct 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 69 aatcggcgcatataatgacggtaaacaaacgcgacgcgggtgccacgcgaccgcggtgct 128 Query: 121 tctttgacatttccctgggcggcctgggcatgggccgcattgtcttcgagctcttcaacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 129 tctttgacatttccctgggcggcctgggcatgggccgcattgtcttcgagctcttcaacg 188 Query: 181 atgtggcgcccaaaacggccgaaaatttccgcgcactctgcacgggcgaaaagggatttg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 189 atgtggcgcccaaaacggccgaaaatttccgcgcactctgcacgggcgaaaagggatttg 248 Query: 241 gcctaatcaccggcaagaagctgcagtacaagggtgtgatattccaccgggtggtcaagg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 249 gcctaatcaccggcaagaagctgcagtacaagggtgtgatattccaccgggtggtcaagg 308 Query: 301 acttcatggtccaggcgggcgacttctctgcgggcaacggcaccggcggcgagtccatct 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 309 acttcatggtccaggcgggcgacttctctgcgggcaacggcaccggcggcgagtccatct 368 Query: 361 acggcgggacgttcgaggatgagagcttcgaaaagaagcacgatcgtcccttcctgctgt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 369 acggcgggacgttcgaggatgagagcttcgaaaagaagcacgatcgtcccttcctgctgt 428 Query: 421 cgatggccaaccggggcaagaacacaaatggctcgcagttctttat 466 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 429 cgatggccaaccggggcaagaacacaaatggctcgcagttctttat 474 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,704 Number of Sequences: 18737 Number of extensions: 12704 Number of successful extensions: 346 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 343 Number of HSP's gapped (non-prelim): 3 length of query: 541 length of database: 41,270,998 effective HSP length: 17 effective length of query: 524 effective length of database: 40,952,469 effective search space: 21459093756 effective search space used: 21459093756 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI519588|AI519588 LD39226.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD39226 5 similar to CG10354: FBan0010354 'enzyme' located on: 2L 27C3-27C3;: 04/10/2001, mRNA sequence. (527 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG10354-RA feature: mRNA loc=2L:6900318..6903663;ID=FBan0010354;... 1045 0.0 >CG10354-RA feature: mRNA loc=2L:6900318..6903663;ID=FBan0010354;gene_id=FBgn003186 8;gene_sym=CG10354;sym=CG10354;scaffold=AE003615;len=3346 Length = 3346 Score = 1045 bits (527), Expect = 0.0 Identities = 527/527 (100%) Strand = Plus / Minus Query: 1 ctgattcctttcctgcctcttgcgcgccttgtccctggccttgaactgctcctcgcgtcg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1369 ctgattcctttcctgcctcttgcgcgccttgtccctggccttgaactgctcctcgcgtcg 1310 Query: 61 ctgtcggctcttgaagatctggtcctcggcattgcccaagtcggtcataatcagctgcac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1309 ctgtcggctcttgaagatctggtcctcggcattgcccaagtcggtcataatcagctgcac 1250 Query: 121 ccggtcaagatttacatctcccgagtcggtgagatagccccttgtcttgtaaacgcactt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1249 ccggtcaagatttacatctcccgagtcggtgagatagccccttgtcttgtaaacgcactt 1190 Query: 181 cttgtataactccaccaatcgatctactgcaccctcgcgaatctccaggctaggcaggtg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1189 cttgtataactccaccaatcgatctactgcaccctcgcgaatctccaggctaggcaggtg 1130 Query: 241 gggcagaaaatcattgcccacaaagaagcacatgaacacccagtcgtccaacgcgcgctc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1129 gggcagaaaatcattgcccacaaagaagcacatgaacacccagtcgtccaacgcgcgctc 1070 Query: 301 gaaactgtactcaaatggcagattcggcatctcaagagtctgctttaggtactcgcgtag 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1069 gaaactgtactcaaatggcagattcggcatctcaagagtctgctttaggtactcgcgtag 1010 Query: 361 cacactcagccgcacaaagatgaactttacctcggcgcctatgggcacatcgggcttaaa 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1009 cacactcagccgcacaaagatgaactttacctcggcgcctatgggcacatcgggcttaaa 950 Query: 421 attggcgctagttggcgcagtcgctccgagtccgacacacttgtccatctcgtggccaaa 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 949 attggcgctagttggcgcagtcgctccgagtccgacacacttgtccatctcgtggccaaa 890 Query: 481 tccgttgcagatgtcgcagggacgcggcttattcggcaggaactcct 527 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 889 tccgttgcagatgtcgcagggacgcggcttattcggcaggaactcct 843 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,175 Number of Sequences: 18737 Number of extensions: 11175 Number of successful extensions: 289 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 288 Number of HSP's gapped (non-prelim): 1 length of query: 527 length of database: 41,270,998 effective HSP length: 17 effective length of query: 510 effective length of database: 40,952,469 effective search space: 20885759190 effective search space used: 20885759190 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI519877|AI519877 LD39710.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD39710 5prime similar to Y09475: D.melanogaster mRNA for BEAF-32B, a boundry element associated factor, mRNA sequence. (560 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value BEAF-32-RB feature: mRNA loc=2R:join(9834664..9835368,9835526..9... 1110 0.0 BEAF-32-RA feature: mRNA loc=2R:join(9834196..9834555,9835526..9... 1110 0.0 >BEAF-32-RB feature: mRNA loc=2R:join(9834664..9835368, 9835526..9836364);ID=FBan0010159;gene_id=FBgn0015602;gene _sym=BEAF-32;sym=CG10159;scaffold=AE003813;len=1544 Length = 1544 Score = 1110 bits (560), Expect = 0.0 Identities = 560/560 (100%) Strand = Plus / Minus Query: 1 ttttaagtaaaatataattgggaaatatacaatcaaagtaagtattttcaatcgataaaa 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1511 ttttaagtaaaatataattgggaaatatacaatcaaagtaagtattttcaatcgataaaa 1452 Query: 61 gagcataatttaaatgaatacataacatatgtataattattaacctagattacgacacgc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1451 gagcataatttaaatgaatacataacatatgtataattattaacctagattacgacacgc 1392 Query: 121 tgatttgcccatttaccatatggtttccttcgttcctcgttttattattcctctgggtaa 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1391 tgatttgcccatttaccatatggtttccttcgttcctcgttttattattcctctgggtaa 1332 Query: 181 atgtatataatggaccgcctactcatccttggcaagcgttgagtcctcactttccttgaa 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1331 atgtatataatggaccgcctactcatccttggcaagcgttgagtcctcactttccttgaa 1272 Query: 241 cagtatatcctggatcttggaccgcacgtacatcttccgactgagcgaaaggtggcgcat 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1271 cagtatatcctggatcttggaccgcacgtacatcttccgactgagcgaaaggtggcgcat 1212 Query: 301 tgcgggcaccaagctaagtgcaaaatagtagtcgtcgtccttggtgagctcctcgtgatt 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1211 tgcgggcaccaagctaagtgcaaaatagtagtcgtcgtccttggtgagctcctcgtgatt 1152 Query: 361 ctgttgtatgatgtagctgagctgttcgctgacagcggtcagccgttcgatggacgtctc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1151 ctgttgtatgatgtagctgagctgttcgctgacagcggtcagccgttcgatggacgtctc 1092 Query: 421 caggttgttcttcagctgcttggccgagctgctgctggaggacgtggaggccaccacagt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1091 caggttgttcttcagctgcttggccgagctgctgctggaggacgtggaggccaccacagt 1032 Query: 481 agcctgtacgcccgaaccaacaccgatgggcctgctacttccaccggctggtgaagtcga 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1031 agcctgtacgcccgaaccaacaccgatgggcctgctacttccaccggctggtgaagtcga 972 Query: 541 atgggttagcacggtcactt 560 |||||||||||||||||||| Sbjct: 971 atgggttagcacggtcactt 952 >BEAF-32-RA feature: mRNA loc=2R:join(9834196..9834555, 9835526..9836364);ID=FBan0010159;gene_id=FBgn0015602;gene _sym=BEAF-32;sym=CG10159;scaffold=AE003813;len=1199 Length = 1199 Score = 1110 bits (560), Expect = 0.0 Identities = 560/560 (100%) Strand = Plus / Minus Query: 1 ttttaagtaaaatataattgggaaatatacaatcaaagtaagtattttcaatcgataaaa 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1166 ttttaagtaaaatataattgggaaatatacaatcaaagtaagtattttcaatcgataaaa 1107 Query: 61 gagcataatttaaatgaatacataacatatgtataattattaacctagattacgacacgc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1106 gagcataatttaaatgaatacataacatatgtataattattaacctagattacgacacgc 1047 Query: 121 tgatttgcccatttaccatatggtttccttcgttcctcgttttattattcctctgggtaa 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1046 tgatttgcccatttaccatatggtttccttcgttcctcgttttattattcctctgggtaa 987 Query: 181 atgtatataatggaccgcctactcatccttggcaagcgttgagtcctcactttccttgaa 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 986 atgtatataatggaccgcctactcatccttggcaagcgttgagtcctcactttccttgaa 927 Query: 241 cagtatatcctggatcttggaccgcacgtacatcttccgactgagcgaaaggtggcgcat 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 926 cagtatatcctggatcttggaccgcacgtacatcttccgactgagcgaaaggtggcgcat 867 Query: 301 tgcgggcaccaagctaagtgcaaaatagtagtcgtcgtccttggtgagctcctcgtgatt 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 866 tgcgggcaccaagctaagtgcaaaatagtagtcgtcgtccttggtgagctcctcgtgatt 807 Query: 361 ctgttgtatgatgtagctgagctgttcgctgacagcggtcagccgttcgatggacgtctc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 806 ctgttgtatgatgtagctgagctgttcgctgacagcggtcagccgttcgatggacgtctc 747 Query: 421 caggttgttcttcagctgcttggccgagctgctgctggaggacgtggaggccaccacagt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 746 caggttgttcttcagctgcttggccgagctgctgctggaggacgtggaggccaccacagt 687 Query: 481 agcctgtacgcccgaaccaacaccgatgggcctgctacttccaccggctggtgaagtcga 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 686 agcctgtacgcccgaaccaacaccgatgggcctgctacttccaccggctggtgaagtcga 627 Query: 541 atgggttagcacggtcactt 560 |||||||||||||||||||| Sbjct: 626 atgggttagcacggtcactt 607 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 17,458 Number of Sequences: 18737 Number of extensions: 17458 Number of successful extensions: 507 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 505 Number of HSP's gapped (non-prelim): 2 length of query: 560 length of database: 41,270,998 effective HSP length: 17 effective length of query: 543 effective length of database: 40,952,469 effective search space: 22237190667 effective search space used: 22237190667 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI519916|AI519916 LD39762.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD39762 5prime, mRNA sequence. (552 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG3309-RA feature: mRNA loc=X:complement(5067920..5068723,506878... 1094 0.0 >CG3309-RA feature: mRNA loc=X:complement(5067920..5068723, 5068783..5069950);ID=FBan0003309;gene_id=FBgn0029756;gene _sym=CG3309;sym=CG3309;scaffold=AE003434;len=1972 Length = 1972 Score = 1094 bits (552), Expect = 0.0 Identities = 552/552 (100%) Strand = Plus / Plus Query: 1 ccagttcaacggaactcggtggccgtatagcactgaaatcgaacaccaatctcaatggca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1245 ccagttcaacggaactcggtggccgtatagcactgaaatcgaacaccaatctcaatggca 1304 Query: 61 gctccagttccagcaatggctcgggcgatgcctcgtccgcgggcctgcacagtaaatata 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1305 gctccagttccagcaatggctcgggcgatgcctcgtccgcgggcctgcacagtaaatata 1364 Query: 121 ggccgtacctgaaaaaggacaaggcgctgatcaaaaaggtgctgctgggcatgaagacca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1365 ggccgtacctgaaaaaggacaaggcgctgatcaaaaaggtgctgctgggcatgaagacca 1424 Query: 181 agcggccggagcatgtgcaaaccgcactgatacgacgccatctgctcgagctgacgcaaa 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1425 agcggccggagcatgtgcaaaccgcactgatacgacgccatctgctcgagctgacgcaaa 1484 Query: 241 gctttatgataccactggaacggtatatggcatcactgatgccgctgcaaaaggacatca 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1485 gctttatgataccactggaacggtatatggcatcactgatgccgctgcaaaaggacatca 1544 Query: 301 gtccgtttaagtcggcgccgaatgccaacagctttaagctggatgactttctgggcacgc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1545 gtccgtttaagtcggcgccgaatgccaacagctttaagctggatgactttctgggcacgc 1604 Query: 361 tggaaaccgctgggccgcagctaacgtcgccgctgaagggcgactggaagggcctgtaca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1605 tggaaaccgctgggccgcagctaacgtcgccgctgaagggcgactggaagggcctgtaca 1664 Query: 421 gacgcttctttcgatcgcccaattttcgcggctggtacggtgcacgtcatcgggagctgc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1665 gacgcttctttcgatcgcccaattttcgcggctggtacggtgcacgtcatcgggagctgc 1724 Query: 481 agctaacgctgcaggatctacagctgcaggcgctatccgtggcgaatctcgagcactggg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1725 agctaacgctgcaggatctacagctgcaggcgctatccgtggcgaatctcgagcactggg 1784 Query: 541 cgcacgacaagc 552 |||||||||||| Sbjct: 1785 cgcacgacaagc 1796 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,488 Number of Sequences: 18737 Number of extensions: 15488 Number of successful extensions: 386 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 385 Number of HSP's gapped (non-prelim): 1 length of query: 552 length of database: 41,270,998 effective HSP length: 17 effective length of query: 535 effective length of database: 40,952,469 effective search space: 21909570915 effective search space used: 21909570915 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI520188|AI520188 LD40262.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD40262 5 similar to CG18353: FBan0018353 GO:[] located on: 2R 47C6-47C6;: 08/13/2002, mRNA sequence. (613 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG30020-RA feature: mRNA loc=2R:join(5951544..5952095,5952165..5... 1199 0.0 >CG30020-RA feature: mRNA loc=2R:join(5951544..5952095,5952165..5952264, 5952327..5952743,5952805..5952954,5953012..5953125, 5953200..5953550,5954340..5955071,5955142..5955321, 5955382..5955477,5955592..5955627,5955716..5955988, 5956137..5957046, 5957107..5957920);ID=FBan0030020;gene_id=FBgn0050020;gen e_sym=CG30020;sym=CG30020;scaffold=AE003828;len=4725 Length = 4725 Score = 1199 bits (605), Expect = 0.0 Identities = 611/613 (99%) Strand = Plus / Plus Query: 1 cctttgtaatttatttcgacgcgacgcgagtggagaaaaacaatcaaattaaattctcta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 13 cctttgtaatttatttcgacgcgacgcgagtggagaaaaacaatcaaattaaattctcta 72 Query: 61 agacgtgataaattctggcgctttaccagctaaacgcttcgaacggaccgcagccgatac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 73 agacgtgataaattctggcgctttaccagctaaacgcttcgaacggaccgcagccgatac 132 Query: 121 gggtgccacccgatgagcagctcgtgaacgatggcgctgaacaaaaggaagagcccttac 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 133 gggtgccacccgatgagcagctcgtgaacgatggcgctgaacaaaaggaagagcccttac 192 Query: 181 tcggacccaatttcgggcgccgaagtggactacaagttgtcatgtcgctgctgcttgaag 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 193 tcggacccaatttcgggcgccgaagtggactacaagttgtcatgtcgctgctgcttgaag 252 Query: 241 acgaacgtggagtacgtcaaactggactcggtgtcggtggcgcgcagtctggacccggcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 253 acgaacgtggagtacgtcaaactggactcggtgtcggtggcgcgcagtctggacccggcg 312 Query: 301 gacgccactgagaagataccgctccttcgttgcctgctgttctgcgtgagcgccgataat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 313 gacgccactgagaagataccgctccttcgttgcctgctgttctgcgtgagcgccgataat 372 Query: 361 gcgccggagctgccgcaacacatatgcctcgagtgcagcaagagcctgcaggtggcctac 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 373 gcgccggagctgccgcaacacatatgcctcgagtgcagcaagagcctgcaggtggcctac 432 Query: 421 tacttccttcagaatgcgctgcgtgcccacgagatcctgtgccggaaactatgtcccaag 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 433 tacttccttcagaatgcgctgcgtgcccacgagatcctgtgccggaaactatgtcccaag 492 Query: 481 gtttcaaagagactgaatggcactttggctcacgagcaggaaaagccagcgtgtgcagag 540 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 493 gtttcaaagagactgaatggcactttggctcaggagcaggaaaagccagcgtgtgcagag 552 Query: 541 ccggtacagcccctaaagaccatgcggcacgagtgtcacgtctgcggagtagtgctctac 600 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 553 ccggtacagcccctaaagaccatgcggcacgagtgtcaggtctgcggagtagtgctctac 612 Query: 601 aatcgcctggagc 613 ||||||||||||| Sbjct: 613 aatcgcctggagc 625 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,122 Number of Sequences: 18737 Number of extensions: 14122 Number of successful extensions: 387 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 386 Number of HSP's gapped (non-prelim): 1 length of query: 613 length of database: 41,270,998 effective HSP length: 17 effective length of query: 596 effective length of database: 40,952,469 effective search space: 24407671524 effective search space used: 24407671524 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI531680|AI531680 SD02913.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD02913 5prime, mRNA sequence. (560 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,514 Number of Sequences: 18737 Number of extensions: 10514 Number of successful extensions: 338 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 338 Number of HSP's gapped (non-prelim): 0 length of query: 560 length of database: 41,270,998 effective HSP length: 17 effective length of query: 543 effective length of database: 40,952,469 effective search space: 22237190667 effective search space used: 22237190667 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI531743|AI531743 SD02991.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD02991 5 similar to SCAR: FBan0004636 located on: 2L 32C5-32C5;: 04/13/2001, mRNA sequence. (567 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value SCAR-RA feature: mRNA loc=2L:join(10969183..10969377,10970307..1... 1124 0.0 >SCAR-RA feature: mRNA loc=2L:join(10969183..10969377,10970307..10971115, 10972854..10973521,10973588..10973837, 10973896..10974805);ID=FBan0004636;gene_id=FBgn0041781;g ene_sym=SCAR;sym=CG4636;scaffold=AE003630;len=2832 Length = 2832 Score = 1124 bits (567), Expect = 0.0 Identities = 567/567 (100%) Strand = Plus / Plus Query: 1 cttcggtcacactgcaaaggtgtggaaatcttagtttccacaaaacgagcaaatatttgc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7 cttcggtcacactgcaaaggtgtggaaatcttagtttccacaaaacgagcaaatatttgc 66 Query: 61 agttttcaagccccaaattggctaattagagttcgcatcggatcgaatttgccaccgaac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 67 agttttcaagccccaaattggctaattagagttcgcatcggatcgaatttgccaccgaac 126 Query: 121 ccccgaaacggaagtggctgcttaatgtttgttgtggtgccagccgccaaacgaaaagtg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 127 ccccgaaacggaagtggctgcttaatgtttgttgtggtgccagccgccaaacgaaaagtg 186 Query: 181 tgacgggcgtcgatgaggacgcactaatttacgggtttgccaatttggagataattgtca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 187 tgacgggcgtcgatgaggacgcactaatttacgggtttgccaatttggagataattgtca 246 Query: 241 atcgcgcccgaccatgccgctgcccaaacgatccatagaacccgtgcatgtggcccgctc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 247 atcgcgcccgaccatgccgctgcccaaacgatccatagaacccgtgcatgtggcccgctc 306 Query: 301 cgtgtatcagcaggatgagctgcaatccgtggagctggagacggtcaccaacaccacgct 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 307 cgtgtatcagcaggatgagctgcaatccgtggagctggagacggtcaccaacaccacgct 366 Query: 361 gacgaacatcattcgccagctgtcctcgctgtccaagcacgcagaggatgtgttcggtga 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 367 gacgaacatcattcgccagctgtcctcgctgtccaagcacgcagaggatgtgttcggtga 426 Query: 421 actggcccgcgacgtgggcaacatcggggatcgagctaactccctgcaggcgcgcatcga 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 427 actggcccgcgacgtgggcaacatcggggatcgagctaactccctgcaggcgcgcatcga 486 Query: 481 tcgcctagctatcaaagttacccagctggacagcacagttgaggaggtgcccttgacgga 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 487 tcgcctagctatcaaagttacccagctggacagcacagttgaggaggtgcccttgacgga 546 Query: 541 cattacccgaaagaaggccttcaagtc 567 ||||||||||||||||||||||||||| Sbjct: 547 cattacccgaaagaaggccttcaagtc 573 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,192 Number of Sequences: 18737 Number of extensions: 15192 Number of successful extensions: 413 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 412 Number of HSP's gapped (non-prelim): 1 length of query: 567 length of database: 41,270,998 effective HSP length: 17 effective length of query: 550 effective length of database: 40,952,469 effective search space: 22523857950 effective search space used: 22523857950 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI532399|AI532399 SD03905.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD03905 5prime, mRNA sequence. (571 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,094 Number of Sequences: 18737 Number of extensions: 13094 Number of successful extensions: 284 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 284 Number of HSP's gapped (non-prelim): 0 length of query: 571 length of database: 41,270,998 effective HSP length: 17 effective length of query: 554 effective length of database: 40,952,469 effective search space: 22687667826 effective search space used: 22687667826 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI532569|AI532569 SD04124.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD04124 5prime similar to U09373: comt FBgn0000346 PID:g507752 SWISS-PROT:P46461, mRNA sequence. (520 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value comt-RA feature: mRNA loc=X:join(12989654..12989913,12989995..12... 1015 0.0 >comt-RA feature: mRNA loc=X:join(12989654..12989913,12989995..12990083, 12990162..12990380,12990454..12992082,12992164..12992322, 12992391..12993153);ID=FBan0001618;gene_id=FBgn0000346;ge ne_sym=comt;sym=CG1618;scaffold=AE003492;len=3119 Length = 3119 Score = 1015 bits (512), Expect = 0.0 Identities = 518/520 (99%) Strand = Plus / Minus Query: 1 gcaaacagacgccggacattggcctccgattcgcccacgtacttgtccaggatctgtgga 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1171 gcaaacagacgccggacattggcctccgattcgcccacgtacttgtccaggatctgtgga 1112 Query: 61 ccgttgacgattttcggctcccgggcatttaacatagttccgatttggcgagccatcaga 120 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1111 ccgttgacgattttcggctcccgggcgtttaacatagttccgatttggcgagccatcaga 1052 Query: 121 gttttgcccgtacccggtggaccataaagtagaatgcccttgacatgcttgcagcccagc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1051 gttttgcccgtacccggtggaccataaagtagaatgcccttgacatgcttgcagcccagc 992 Query: 181 tgctcgaccagttccggtgggaagacacgggatgcgaaggctcgtcggaatatcgaattg 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 991 tgctcgaccagttccggtgggaagacacgggatgcgaaggctcgtcgaaatatcgaattg 932 Query: 241 aattccttgtccaggccaccgatgcccattttgccaaagtcccaatccgggtttataatg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 931 aattccttgtccaggccaccgatgcccattttgccaaagtcccaatccgggtttataatg 872 Query: 301 gactggcggaccaccttgcccttgctcttgccctgcagattcagcgaactgttctcggcc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 871 gactggcggaccaccttgcccttgctcttgccctgcagattcagcgaactgttctcggcc 812 Query: 361 ttctcgaactgcaccacggtgttgccaaggatgcggccgaagcggacattacgcatcgcg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 811 ttctcgaactgcaccacggtgttgccaaggatgcggccgaagcggacattacgcatcgcg 752 Query: 421 gtgtccttgccctcgcccaagctcttgggatcgatggcctctagggatttgacggccagg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 751 gtgtccttgccctcgcccaagctcttgggatcgatggcctctagggatttgacggccagg 692 Query: 481 ccgagaagtttcttgtccttgaaattgaagaccagtgatt 520 |||||||||||||||||||||||||||||||||||||||| Sbjct: 691 ccgagaagtttcttgtccttgaaattgaagaccagtgatt 652 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,509 Number of Sequences: 18737 Number of extensions: 14509 Number of successful extensions: 372 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 371 Number of HSP's gapped (non-prelim): 1 length of query: 520 length of database: 41,270,998 effective HSP length: 17 effective length of query: 503 effective length of database: 40,952,469 effective search space: 20599091907 effective search space used: 20599091907 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI532696|AI532696 SD04285.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD04285 5prime, mRNA sequence. (585 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31055-RC feature: mRNA loc=3R:complement(23500717..23501493,23... 392 e-108 CG31055-RB feature: mRNA loc=3R:complement(23500717..23501493,23... 392 e-108 CG31055-RA feature: mRNA loc=3R:complement(23500717..23501493,23... 392 e-108 >CG31055-RC feature: mRNA loc=3R:complement(23500717..23501493,23501554..23501655, 23502026..23503207);ID=FBan0031055;gene_id=FBgn0051055;ge ne_sym=CG31055;sym=CG31055;scaffold=AE003762;len=2061 Length = 2061 Score = 392 bits (198), Expect = e-108 Identities = 201/202 (99%) Strand = Plus / Minus Query: 384 cttacaatcctgtatttgggcttcaacttgaaggagtctttcttggtctccgcttcgccc 443 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1182 cttacaatcctgtatttgggcttcaacttgaaggagtctttcttggtctccgcttcgccc 1123 Query: 444 gagagattctcccttgactcgctatccccgatctggctcgacaaattgggtgtcattggc 503 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1122 gagagattctcccttgactcgctatccccgatctggctcgacaaattgggtgtcattggc 1063 Query: 504 tccaaggacgcctctctgggcaggtccaactccattcgtatttgcttgatttggagcatt 563 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1062 tccaaggacgcctctctgggcaggtccaactccattcgtatttgcttgatttggagcatt 1003 Query: 564 gtgatatcaaccaattgattga 585 ||||||||||||| |||||||| Sbjct: 1002 gtgatatcaaccagttgattga 981 >CG31055-RB feature: mRNA loc=3R:complement(23500717..23501493,23501554..23501655, 23502026..23503104, 23503160..23503205);ID=FBan0031055;gene_id=FBgn0051055;ge ne_sym=CG31055;sym=CG31055;scaffold=AE003762;len=2004 Length = 2004 Score = 392 bits (198), Expect = e-108 Identities = 201/202 (99%) Strand = Plus / Minus Query: 384 cttacaatcctgtatttgggcttcaacttgaaggagtctttcttggtctccgcttcgccc 443 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1125 cttacaatcctgtatttgggcttcaacttgaaggagtctttcttggtctccgcttcgccc 1066 Query: 444 gagagattctcccttgactcgctatccccgatctggctcgacaaattgggtgtcattggc 503 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1065 gagagattctcccttgactcgctatccccgatctggctcgacaaattgggtgtcattggc 1006 Query: 504 tccaaggacgcctctctgggcaggtccaactccattcgtatttgcttgatttggagcatt 563 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1005 tccaaggacgcctctctgggcaggtccaactccattcgtatttgcttgatttggagcatt 946 Query: 564 gtgatatcaaccaattgattga 585 ||||||||||||| |||||||| Sbjct: 945 gtgatatcaaccagttgattga 924 >CG31055-RA feature: mRNA loc=3R:complement(23500717..23501493,23501554..23501655, 23502026..23502966, 23503030..23503221);ID=FBan0031055;gene_id=FBgn0051055;ge ne_sym=CG31055;sym=CG31055;scaffold=AE003762;len=2012 Length = 2012 Score = 392 bits (198), Expect = e-108 Identities = 201/202 (99%) Strand = Plus / Minus Query: 384 cttacaatcctgtatttgggcttcaacttgaaggagtctttcttggtctccgcttcgccc 443 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1133 cttacaatcctgtatttgggcttcaacttgaaggagtctttcttggtctccgcttcgccc 1074 Query: 444 gagagattctcccttgactcgctatccccgatctggctcgacaaattgggtgtcattggc 503 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1073 gagagattctcccttgactcgctatccccgatctggctcgacaaattgggtgtcattggc 1014 Query: 504 tccaaggacgcctctctgggcaggtccaactccattcgtatttgcttgatttggagcatt 563 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1013 tccaaggacgcctctctgggcaggtccaactccattcgtatttgcttgatttggagcatt 954 Query: 564 gtgatatcaaccaattgattga 585 ||||||||||||| |||||||| Sbjct: 953 gtgatatcaaccagttgattga 932 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,289 Number of Sequences: 18737 Number of extensions: 11289 Number of successful extensions: 223 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 217 Number of HSP's gapped (non-prelim): 6 length of query: 585 length of database: 41,270,998 effective HSP length: 17 effective length of query: 568 effective length of database: 40,952,469 effective search space: 23261002392 effective search space used: 23261002392 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI533578|AI533578 SD05462.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD05462 5 similar to Fad: FBan0005887 located on: 3R 87C1-87C1;: 04/13/2001, mRNA sequence. (543 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value desat1-RA feature: mRNA loc=3R:join(8265341..8265452,8270540..82... 1068 0.0 desat1-RE feature: mRNA loc=3R:join(8267842..8267960,8270540..82... 876 0.0 desat1-RD feature: mRNA loc=3R:join(8269782..8269878,8270540..82... 876 0.0 desat1-RC feature: mRNA loc=3R:join(8267168..8267349,8270540..82... 876 0.0 desat1-RB feature: mRNA loc=3R:join(8269323..8269463,8270540..82... 876 0.0 >desat1-RA feature: mRNA loc=3R:join(8265341..8265452,8270540..8270859, 8271719..8272055,8272117..8272302, 8272364..8273357);ID=FBan0005887;gene_id=FBgn0043044;gen e_sym=desat1;sym=CG5887;scaffold=AE003696;len=1949 Length = 1949 Score = 1068 bits (539), Expect = 0.0 Identities = 542/543 (99%) Strand = Plus / Plus Query: 1 ctttgccatcactaaaccaggagaatattgtttcgttgaaaatttgagttataaatctta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16 ctttgccatcactaaaccaggagaatattgtttcgttgaaaatttgagttataaatctta 75 Query: 61 aaactttagttattctcagaatttggataacatttacttgatgcaacatgccgcccaacg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 76 aaactttagttattctcagaatttggataacatttacttgatgcaacatgccgcccaacg 135 Query: 121 cccaagccggtgcccagtccatctcagactcgctgatcgcagcagctagtgccgccgccg 180 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 136 cccaagccggtgcccagtccatctcagactcactgatcgcagcagctagtgccgccgccg 195 Query: 181 acgcgggtcagagccccaccaagctgcaggaggactccaccggagtgctcttcgagtgcg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 196 acgcgggtcagagccccaccaagctgcaggaggactccaccggagtgctcttcgagtgcg 255 Query: 241 atgtggaaaccaccgacggtggtcttgtcaaggacatcaccgtgatgaagaaggccgaga 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 256 atgtggaaaccaccgacggtggtcttgtcaaggacatcaccgtgatgaagaaggccgaga 315 Query: 301 agcgccgcctgaagctcgtctggcgcaacatcatcgccttcggttacctccatctggctg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 316 agcgccgcctgaagctcgtctggcgcaacatcatcgccttcggttacctccatctggctg 375 Query: 361 ccctctacggagcctacctcatggtcacctctgccaagtggcagacgtgcatcttagctt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 376 ccctctacggagcctacctcatggtcacctctgccaagtggcagacgtgcatcttagctt 435 Query: 421 attttctatacgtcatttctggcctaggcattaccgccggtgcccatcgtctgtgggcgc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 436 attttctatacgtcatttctggcctaggcattaccgccggtgcccatcgtctgtgggcgc 495 Query: 481 atcgctcctacaaggccaagtggcccctgcgagtgattctggtcatcttcaacacgattg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 496 atcgctcctacaaggccaagtggcccctgcgagtgattctggtcatcttcaacacgattg 555 Query: 541 cct 543 ||| Sbjct: 556 cct 558 >desat1-RE feature: mRNA loc=3R:join(8267842..8267960,8270540..8270859, 8271719..8272055,8272117..8272302, 8272364..8273357);ID=FBan0005887;gene_id=FBgn0043044;gen e_sym=desat1;sym=CG5887;scaffold=AE003696;len=1956 Length = 1956 Score = 876 bits (442), Expect = 0.0 Identities = 445/446 (99%) Strand = Plus / Plus Query: 98 ttgatgcaacatgccgcccaacgcccaagccggtgcccagtccatctcagactcgctgat 157 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 120 ttgatgcaacatgccgcccaacgcccaagccggtgcccagtccatctcagactcactgat 179 Query: 158 cgcagcagctagtgccgccgccgacgcgggtcagagccccaccaagctgcaggaggactc 217 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 180 cgcagcagctagtgccgccgccgacgcgggtcagagccccaccaagctgcaggaggactc 239 Query: 218 caccggagtgctcttcgagtgcgatgtggaaaccaccgacggtggtcttgtcaaggacat 277 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 240 caccggagtgctcttcgagtgcgatgtggaaaccaccgacggtggtcttgtcaaggacat 299 Query: 278 caccgtgatgaagaaggccgagaagcgccgcctgaagctcgtctggcgcaacatcatcgc 337 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 300 caccgtgatgaagaaggccgagaagcgccgcctgaagctcgtctggcgcaacatcatcgc 359 Query: 338 cttcggttacctccatctggctgccctctacggagcctacctcatggtcacctctgccaa 397 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 360 cttcggttacctccatctggctgccctctacggagcctacctcatggtcacctctgccaa 419 Query: 398 gtggcagacgtgcatcttagcttattttctatacgtcatttctggcctaggcattaccgc 457 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 420 gtggcagacgtgcatcttagcttattttctatacgtcatttctggcctaggcattaccgc 479 Query: 458 cggtgcccatcgtctgtgggcgcatcgctcctacaaggccaagtggcccctgcgagtgat 517 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 480 cggtgcccatcgtctgtgggcgcatcgctcctacaaggccaagtggcccctgcgagtgat 539 Query: 518 tctggtcatcttcaacacgattgcct 543 |||||||||||||||||||||||||| Sbjct: 540 tctggtcatcttcaacacgattgcct 565 >desat1-RD feature: mRNA loc=3R:join(8269782..8269878,8270540..8270859, 8271719..8272055,8272117..8272302, 8272364..8273357);ID=FBan0005887;gene_id=FBgn0043044;gen e_sym=desat1;sym=CG5887;scaffold=AE003696;len=1934 Length = 1934 Score = 876 bits (442), Expect = 0.0 Identities = 445/446 (99%) Strand = Plus / Plus Query: 98 ttgatgcaacatgccgcccaacgcccaagccggtgcccagtccatctcagactcgctgat 157 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 98 ttgatgcaacatgccgcccaacgcccaagccggtgcccagtccatctcagactcactgat 157 Query: 158 cgcagcagctagtgccgccgccgacgcgggtcagagccccaccaagctgcaggaggactc 217 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 158 cgcagcagctagtgccgccgccgacgcgggtcagagccccaccaagctgcaggaggactc 217 Query: 218 caccggagtgctcttcgagtgcgatgtggaaaccaccgacggtggtcttgtcaaggacat 277 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 218 caccggagtgctcttcgagtgcgatgtggaaaccaccgacggtggtcttgtcaaggacat 277 Query: 278 caccgtgatgaagaaggccgagaagcgccgcctgaagctcgtctggcgcaacatcatcgc 337 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 278 caccgtgatgaagaaggccgagaagcgccgcctgaagctcgtctggcgcaacatcatcgc 337 Query: 338 cttcggttacctccatctggctgccctctacggagcctacctcatggtcacctctgccaa 397 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 338 cttcggttacctccatctggctgccctctacggagcctacctcatggtcacctctgccaa 397 Query: 398 gtggcagacgtgcatcttagcttattttctatacgtcatttctggcctaggcattaccgc 457 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 398 gtggcagacgtgcatcttagcttattttctatacgtcatttctggcctaggcattaccgc 457 Query: 458 cggtgcccatcgtctgtgggcgcatcgctcctacaaggccaagtggcccctgcgagtgat 517 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 458 cggtgcccatcgtctgtgggcgcatcgctcctacaaggccaagtggcccctgcgagtgat 517 Query: 518 tctggtcatcttcaacacgattgcct 543 |||||||||||||||||||||||||| Sbjct: 518 tctggtcatcttcaacacgattgcct 543 >desat1-RC feature: mRNA loc=3R:join(8267168..8267349,8270540..8270859, 8271719..8272055,8272117..8272302, 8272364..8273357);ID=FBan0005887;gene_id=FBgn0043044;gen e_sym=desat1;sym=CG5887;scaffold=AE003696;len=2019 Length = 2019 Score = 876 bits (442), Expect = 0.0 Identities = 445/446 (99%) Strand = Plus / Plus Query: 98 ttgatgcaacatgccgcccaacgcccaagccggtgcccagtccatctcagactcgctgat 157 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 183 ttgatgcaacatgccgcccaacgcccaagccggtgcccagtccatctcagactcactgat 242 Query: 158 cgcagcagctagtgccgccgccgacgcgggtcagagccccaccaagctgcaggaggactc 217 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 243 cgcagcagctagtgccgccgccgacgcgggtcagagccccaccaagctgcaggaggactc 302 Query: 218 caccggagtgctcttcgagtgcgatgtggaaaccaccgacggtggtcttgtcaaggacat 277 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 303 caccggagtgctcttcgagtgcgatgtggaaaccaccgacggtggtcttgtcaaggacat 362 Query: 278 caccgtgatgaagaaggccgagaagcgccgcctgaagctcgtctggcgcaacatcatcgc 337 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 363 caccgtgatgaagaaggccgagaagcgccgcctgaagctcgtctggcgcaacatcatcgc 422 Query: 338 cttcggttacctccatctggctgccctctacggagcctacctcatggtcacctctgccaa 397 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 423 cttcggttacctccatctggctgccctctacggagcctacctcatggtcacctctgccaa 482 Query: 398 gtggcagacgtgcatcttagcttattttctatacgtcatttctggcctaggcattaccgc 457 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 483 gtggcagacgtgcatcttagcttattttctatacgtcatttctggcctaggcattaccgc 542 Query: 458 cggtgcccatcgtctgtgggcgcatcgctcctacaaggccaagtggcccctgcgagtgat 517 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 543 cggtgcccatcgtctgtgggcgcatcgctcctacaaggccaagtggcccctgcgagtgat 602 Query: 518 tctggtcatcttcaacacgattgcct 543 |||||||||||||||||||||||||| Sbjct: 603 tctggtcatcttcaacacgattgcct 628 >desat1-RB feature: mRNA loc=3R:join(8269323..8269463,8270540..8270859, 8271719..8272055,8272117..8272302, 8272364..8273357);ID=FBan0005887;gene_id=FBgn0043044;gen e_sym=desat1;sym=CG5887;scaffold=AE003696;len=1978 Length = 1978 Score = 876 bits (442), Expect = 0.0 Identities = 445/446 (99%) Strand = Plus / Plus Query: 98 ttgatgcaacatgccgcccaacgcccaagccggtgcccagtccatctcagactcgctgat 157 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 142 ttgatgcaacatgccgcccaacgcccaagccggtgcccagtccatctcagactcactgat 201 Query: 158 cgcagcagctagtgccgccgccgacgcgggtcagagccccaccaagctgcaggaggactc 217 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 202 cgcagcagctagtgccgccgccgacgcgggtcagagccccaccaagctgcaggaggactc 261 Query: 218 caccggagtgctcttcgagtgcgatgtggaaaccaccgacggtggtcttgtcaaggacat 277 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 262 caccggagtgctcttcgagtgcgatgtggaaaccaccgacggtggtcttgtcaaggacat 321 Query: 278 caccgtgatgaagaaggccgagaagcgccgcctgaagctcgtctggcgcaacatcatcgc 337 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 322 caccgtgatgaagaaggccgagaagcgccgcctgaagctcgtctggcgcaacatcatcgc 381 Query: 338 cttcggttacctccatctggctgccctctacggagcctacctcatggtcacctctgccaa 397 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 382 cttcggttacctccatctggctgccctctacggagcctacctcatggtcacctctgccaa 441 Query: 398 gtggcagacgtgcatcttagcttattttctatacgtcatttctggcctaggcattaccgc 457 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 442 gtggcagacgtgcatcttagcttattttctatacgtcatttctggcctaggcattaccgc 501 Query: 458 cggtgcccatcgtctgtgggcgcatcgctcctacaaggccaagtggcccctgcgagtgat 517 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 502 cggtgcccatcgtctgtgggcgcatcgctcctacaaggccaagtggcccctgcgagtgat 561 Query: 518 tctggtcatcttcaacacgattgcct 543 |||||||||||||||||||||||||| Sbjct: 562 tctggtcatcttcaacacgattgcct 587 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,451 Number of Sequences: 18737 Number of extensions: 14451 Number of successful extensions: 354 Number of sequences better than 1.0e-100: 5 Number of HSP's better than 0.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 349 Number of HSP's gapped (non-prelim): 5 length of query: 543 length of database: 41,270,998 effective HSP length: 17 effective length of query: 526 effective length of database: 40,952,469 effective search space: 21540998694 effective search space used: 21540998694 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI534269|AI534269 SD07039.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD07039 5 similar to EG:140G11.5: FBan0003939 located on: X 3C9-3C9;: 04/13/2001, mRNA sequence. (590 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value EG:140G11.5-RA feature: mRNA loc=X:join(2933557..2934096,2934372... 977 0.0 >EG:140G11.5-RA feature: mRNA loc=X:join(2933557..2934096, 2934372..2934662);ID=FBan0003939;gene_id=FBgn0040396;gen e_sym=EG:140G11.5;sym=CG3939;scaffold=AE003426;len=831 Length = 831 Score = 977 bits (493), Expect = 0.0 Identities = 519/529 (98%), Gaps = 1/529 (0%) Strand = Plus / Plus Query: 62 ttatacgccattaattacccgataaacttaccgatggccgataagcaacggctaagtgat 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 175 ttatacgccattaattacccgataaacttaccgatggccgataagcaacggctaagtgat 234 Query: 122 ccgtaacacccagcgataagatccagataagattggaattaaattttgggtttgccatcc 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 235 ccgtaacacccagcgataagatccagataagattggaattaaattttgggtttgccatcc 294 Query: 182 gcatcgaaatcgccgcaatcggaatttacttgtacaccagccaactcgccgttcaagacg 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 295 gcatcgaaatcgccgcaatcggaatttacttgtacaccagccaactcgccgttcaagacg 354 Query: 242 tccaagnnnnnnnnnaatccagaaatcccatacactgccaaaatgcccgaatatgtgccg 301 |||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 355 tccaagtttttttt-aatccagaaatcccatacactgccaaaatgcccgaatatgtgccg 413 Query: 302 gcacggggcttcaaggagatggaaaatctgatcaagctgtacgagaaccagcgcagcccc 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 414 gcacggggcttcaaggagatggaaaatctgatcaagctgtacgagaaccagcgcagcccc 473 Query: 362 atctacatctacttctacggcgagaaagacaaggacggacgcagctggtgtccggactgc 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 474 atctacatctacttctacggcgagaaagacaaggacggacgcagctggtgtccggactgc 533 Query: 422 gtggcggccgaggaaactatcatgagtgcctttcgcaaccacgcgccggcggattgcatg 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 534 gtggcggccgaggaaactatcatgagtgcctttcgcaaccacgcgccggcggattgcatg 593 Query: 482 atcctggtggtggacgtgggtagccgggaatcctggataggcaaggacaacttgttccga 541 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 594 atcctggtggtggacgtgggtagccgggaatcctggataggcaaggacaacatgttccga 653 Query: 542 aagccgccatactcggtggaaggcataccgacccttatacgctggaagg 590 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 654 aagccgccatactcggtggaaggcataccgacccttatacgctggaagg 702 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,800 Number of Sequences: 18737 Number of extensions: 10800 Number of successful extensions: 188 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 186 Number of HSP's gapped (non-prelim): 2 length of query: 590 length of database: 41,270,998 effective HSP length: 17 effective length of query: 573 effective length of database: 40,952,469 effective search space: 23465764737 effective search space used: 23465764737 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI534424|AI534424 SD07237.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD07237 5 similar to brat: FBan0010719 'transcription factor' located on: 2L 37C3-37C5;: 04/13/2001, mRNA sequence. (549 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 28,625 Number of Sequences: 18737 Number of extensions: 28625 Number of successful extensions: 711 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 711 Number of HSP's gapped (non-prelim): 0 length of query: 549 length of database: 41,270,998 effective HSP length: 17 effective length of query: 532 effective length of database: 40,952,469 effective search space: 21786713508 effective search space used: 21786713508 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI534567|AI534567 SD07466.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD07466 5prime similar to X70692: D.melanogaster 18S rRNA pseudogene, mRNA sequence. (513 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9140 Number of Sequences: 18737 Number of extensions: 9140 Number of successful extensions: 164 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 164 Number of HSP's gapped (non-prelim): 0 length of query: 513 length of database: 41,270,998 effective HSP length: 17 effective length of query: 496 effective length of database: 40,952,469 effective search space: 20312424624 effective search space used: 20312424624 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI541639|AI541639 SD05682.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD05682 5prime, mRNA sequence. (693 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 21,430 Number of Sequences: 18737 Number of extensions: 21430 Number of successful extensions: 742 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 742 Number of HSP's gapped (non-prelim): 0 length of query: 693 length of database: 41,270,998 effective HSP length: 17 effective length of query: 676 effective length of database: 40,952,469 effective search space: 27683869044 effective search space used: 27683869044 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI541779|AI541779 SD06940.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD06940 5 similar to CG13340: FBan0013340 'peptidase' located on: 2R 50C9-50C9;: 04/13/2001, mRNA sequence. (675 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG13340-RA feature: mRNA loc=2R:complement(8842838..8844959);ID=... 775 0.0 >CG13340-RA feature: mRNA loc=2R:complement(8842838..8844959);ID=FBan0013340;gene_ id=FBgn0033868;gene_sym=CG13340;sym=CG13340;scaffold=AE0 03817;len=2122 Length = 2122 Score = 775 bits (391), Expect = 0.0 Identities = 413/424 (97%) Strand = Plus / Minus Query: 1 ccttcgccatcgtcttgccatcgccgcaggagaatctcacgccagcactggacaggacat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 424 ccttcgccatcgtcttgccatcgccgcaggagaatctcacgccagcactggacaggacat 365 Query: 61 gcggtttgcacaggacacacgcatttttcaacgagcagtgaatctgacgtagcttgttca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 364 gcggtttgcacaggacacacgcatttttcaacgagcagtgaatctgacgtagcttgttca 305 Query: 121 tcctgattggcggttagttctgcttggttatattcggatactttgaaaatcggatatggg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 304 tcctgattggcggttagttctgcttggttatattcggatactttgaaaatcggatatggg 245 Query: 181 ctttcaaaaaatccccttcgaacgcaagtaatactacaaaaattttgggtgattaaaact 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 244 ctttcaaaaaatccccttcgaacgcaagtaatactacaaaaattttgggtgattaaaact 185 Query: 241 agtccgtctgtttccacactcaaaatttggtcgaaaaatccgaaacgaaaaaagataaga 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 184 agtccgtctgtttccacactcaaaatttggtcgaaaaatccgaaacgaaaaaagataaga 125 Query: 301 gaaagttttaactatattggagagnnnnnnnnnnncgaaaaatttttctggggacttttt 360 |||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 124 gaaagttttaactatattggagagaaaaaaaaaaacgaaaaatttttctggggacttttt 65 Query: 361 taaaaacgatctgttctctaccggcgtactaataaaatgaaactgaacatattggtgttc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 64 taaaaacgatctgttctctaccggcgtactaataaaatgaaactgaacatattggtgttc 5 Query: 421 gagc 424 |||| Sbjct: 4 gagc 1 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,743 Number of Sequences: 18737 Number of extensions: 14743 Number of successful extensions: 316 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 314 Number of HSP's gapped (non-prelim): 2 length of query: 675 length of database: 41,270,998 effective HSP length: 17 effective length of query: 658 effective length of database: 40,952,469 effective search space: 26946724602 effective search space used: 26946724602 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI542925|AI542925 SD09444.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD09444 5 similar to CG10813: FBan0010813 'defense/immunity protein' located on: 3L 63C5-63C5;: 04/13/2001, mRNA sequence. (631 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,226 Number of Sequences: 18737 Number of extensions: 14226 Number of successful extensions: 383 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 383 Number of HSP's gapped (non-prelim): 0 length of query: 631 length of database: 41,270,998 effective HSP length: 17 effective length of query: 614 effective length of database: 40,952,469 effective search space: 25144815966 effective search space used: 25144815966 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI543045|AI543045 SD09626.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD09626 5prime, mRNA sequence. (499 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32436-RA feature: mRNA loc=3L:join(21261331..21261938,21267291... 965 0.0 >CG32436-RA feature: mRNA loc=3L:join(21261331..21261938,21267291..21267537, 21267615..21267738,21267825..21270289, 21270385..21272207);ID=FBan0032436;gene_id=FBgn0052436;ge ne_sym=CG32436;sym=CG32436;scaffold=AE003594;len=5267 Length = 5267 Score = 965 bits (487), Expect = 0.0 Identities = 496/499 (99%) Strand = Plus / Minus Query: 1 ccaatggcaatatctggtaatttcttggccaataggcaagccaatatgtactcgtagttt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2902 ccaatggcaatatctggtaatttcttggccaataggcaagccaatatgtactcgtagttt 2843 Query: 61 tggtaatcttctccaaagctgtttgcagattccaaactaaactcgattagttcagaattc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2842 tggtaatcttctccaaagctgtttgcagattccaaactaaactcgattagttcagaattc 2783 Query: 121 caggtggacagcttatactttgctgaaacagccatggctaccaaagcagccaggagtcct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2782 caggtggacagcttatactttgctgaaacagccatggctaccaaagcagccaggagtcct 2723 Query: 181 cccagtttggccatctcctcgtccaactggggaagttgggtggttcccacaatgatccag 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2722 cccagtttggccatctcctcgtccaactggggaagttgggtggttcccacaatgatccag 2663 Query: 241 gagccgtccggtaacgccttaaagttgctcttgagagccacctcctcctccaccgttaac 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2662 gagccgtccggtaacgccttaaagttgctcttgagagccacctcctcctccaccgttaac 2603 Query: 301 actctcttcagatcctcctcctcctcctggccgagctcatagccccgcttgatccttagc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2602 actctcttcagatcctcctcctcctcctggccgagctcatagccccgcttgatccttagc 2543 Query: 361 cgcagagccttcagattctcttgatccgagcgcaagaggaccttttgggccggcttatag 420 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 2542 cgcagagccttcagattctcttgatccgagcgcaggaggaccttttgggccggcttatag 2483 Query: 421 agatgtggtctcttgggttgtggatctggcagttccttaataatactattgatgatcata 480 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct: 2482 agatgtggtctcttgggttgtggttccggcagttccttaataatactattgatgatcata 2423 Query: 481 ttgatcagctcctctacca 499 ||||||||||||||||||| Sbjct: 2422 ttgatcagctcctctacca 2404 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 19,696 Number of Sequences: 18737 Number of extensions: 19696 Number of successful extensions: 1480 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1479 Number of HSP's gapped (non-prelim): 1 length of query: 499 length of database: 41,270,998 effective HSP length: 17 effective length of query: 482 effective length of database: 40,952,469 effective search space: 19739090058 effective search space used: 19739090058 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI543873|AI543873 LD45537.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD45537 5prime, mRNA sequence. (662 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value drongo-RB feature: mRNA loc=2L:complement(835249..836243,836639.... 724 0.0 >drongo-RB feature: mRNA loc=2L:complement(835249..836243,836639..836955, 837018..837212,838211..839043, 851564..852726);ID=FBan0003365;gene_id=FBgn0020304;gene_ sym=drongo;sym=CG3365;scaffold=AE003588;len=3503 Length = 3503 Score = 724 bits (365), Expect = 0.0 Identities = 365/365 (100%) Strand = Plus / Plus Query: 1 ttgttgtaggcgagcggtcggaatttgcgtcggaattgtgttgagtcgagtcgcgctatt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3 ttgttgtaggcgagcggtcggaatttgcgtcggaattgtgttgagtcgagtcgcgctatt 62 Query: 61 ttgtttcgagtgcgctgtgctgtttggtttcgttccgtttcgtttcgctgttcgttttcc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 63 ttgtttcgagtgcgctgtgctgtttggtttcgttccgtttcgtttcgctgttcgttttcc 122 Query: 121 actcgtcttcgaatccgcactgcaaacaaacaaggagaaggggaagcagcaaaagtggcg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 123 actcgtcttcgaatccgcactgcaaacaaacaaggagaaggggaagcagcaaaagtggcg 182 Query: 181 agtgcattcgcagcgtcgaaatttcaattgaaatctgaaatctgtgtggcaattgcagcg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 183 agtgcattcgcagcgtcgaaatttcaattgaaatctgaaatctgtgtggcaattgcagcg 242 Query: 241 gcactcggtgtaaatagattgaattgaagcgaaattctgcgagtcgaagaagtgaaaagt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 243 gcactcggtgtaaatagattgaattgaagcgaaattctgcgagtcgaagaagtgaaaagt 302 Query: 301 aaacaataacacgggcaatcggaaaagtggttttcgataaatcgcaccgcacacacacac 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 303 aaacaataacacgggcaatcggaaaagtggttttcgataaatcgcaccgcacacacacac 362 Query: 361 ctgtc 365 ||||| Sbjct: 363 ctgtc 367 Score = 525 bits (265), Expect = e-148 Identities = 265/265 (100%) Strand = Plus / Plus Query: 398 cgtcgaaggagaggaaaggtcaagccaaaaattgcgtaaagaaaaggaaaggaaagctta 457 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 400 cgtcgaaggagaggaaaggtcaagccaaaaattgcgtaaagaaaaggaaaggaaagctta 459 Query: 458 gaagaggggaaggggaattacgtcagtttcgcattcccgataaaaatttttgattcccta 517 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 460 gaagaggggaaggggaattacgtcagtttcgcattcccgataaaaatttttgattcccta 519 Query: 518 aacgatcctgatagccagccattacgataggcaaaaaacgataacagcggaaatttacgt 577 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 520 aacgatcctgatagccagccattacgataggcaaaaaacgataacagcggaaatttacgt 579 Query: 578 caatttggagcagaaagtaaacgataccaattcccgaaagaattcaaaaaatcaggcaag 637 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 580 caatttggagcagaaagtaaacgataccaattcccgaaagaattcaaaaaatcaggcaag 639 Query: 638 attcagttcgtgtacgcttacaaca 662 ||||||||||||||||||||||||| Sbjct: 640 attcagttcgtgtacgcttacaaca 664 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 17,762 Number of Sequences: 18737 Number of extensions: 17762 Number of successful extensions: 378 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 375 Number of HSP's gapped (non-prelim): 3 length of query: 662 length of database: 41,270,998 effective HSP length: 17 effective length of query: 645 effective length of database: 40,952,469 effective search space: 26414342505 effective search space used: 26414342505 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI543965|AI543965 LD45671.5prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD45671 5 similar to CG4062: FBan0004062 'enzyme' located on: 2R 49F10-49F10;: 04/10/2001, mRNA sequence. (680 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,614 Number of Sequences: 18737 Number of extensions: 15614 Number of successful extensions: 358 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 358 Number of HSP's gapped (non-prelim): 0 length of query: 680 length of database: 41,270,998 effective HSP length: 17 effective length of query: 663 effective length of database: 40,952,469 effective search space: 27151486947 effective search space used: 27151486947 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944401|AI944401 bs01a02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs01a02 5', mRNA sequence. (322 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG5703-RA feature: mRNA loc=X:join(17363048..17363138,17363213..... 583 e-166 >CG5703-RA feature: mRNA loc=X:join(17363048..17363138,17363213..17363419, 17363549..17364067, 17364222..17364465);ID=FBan0005703;gene_id=FBgn0030853;ge ne_sym=CG5703;sym=CG5703;scaffold=AE003506;len=1061 Length = 1061 Score = 583 bits (294), Expect = e-166 Identities = 294/294 (100%) Strand = Plus / Minus Query: 29 gttgcttaacatttatttaactttcgttcgacaatcagtgataggttctgctccttgctc 88 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1053 gttgcttaacatttatttaactttcgttcgacaatcagtgataggttctgctccttgctc 994 Query: 89 atcctctacagaccggcctgcagaccaaagccaggacccttgggctcctcgctcagggaa 148 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 993 atcctctacagaccggcctgcagaccaaagccaggacccttgggctcctcgctcagggaa 934 Query: 149 gtgggctcgccctttggctcgctggcaaagcgtccgttgcgtggcccagggggcgatatc 208 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 933 gtgggctcgccctttggctcgctggcaaagcgtccgttgcgtggcccagggggcgatatc 874 Query: 209 ttatccgccttcaggtcgttcaggatgtcctgcatgtccttggatgtcagatcctcatag 268 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 873 ttatccgccttcaggtcgttcaggatgtcctgcatgtccttggatgtcagatcctcatag 814 Query: 269 tagtcatcgttgatcgccaccattggcgcattgacacaggcgcccaagcactcg 322 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 813 tagtcatcgttgatcgccaccattggcgcattgacacaggcgcccaagcactcg 760 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7260 Number of Sequences: 18737 Number of extensions: 7260 Number of successful extensions: 603 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 602 Number of HSP's gapped (non-prelim): 1 length of query: 322 length of database: 41,270,998 effective HSP length: 16 effective length of query: 306 effective length of database: 40,971,206 effective search space: 12537189036 effective search space used: 12537189036 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944421|AI944421 bs01c01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs01c01 5', mRNA sequence. (370 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6681 Number of Sequences: 18737 Number of extensions: 6681 Number of successful extensions: 496 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 496 Number of HSP's gapped (non-prelim): 0 length of query: 370 length of database: 41,270,998 effective HSP length: 17 effective length of query: 353 effective length of database: 40,952,469 effective search space: 14456221557 effective search space used: 14456221557 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944431|AI944431 bs01c11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs01c11 5', mRNA sequence. (358 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4247 Number of Sequences: 18737 Number of extensions: 4247 Number of successful extensions: 264 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 264 Number of HSP's gapped (non-prelim): 0 length of query: 358 length of database: 41,270,998 effective HSP length: 17 effective length of query: 341 effective length of database: 40,952,469 effective search space: 13964791929 effective search space used: 13964791929 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944432|AI944432 bs01c12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs01c12 5', mRNA sequence. (287 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4540 Number of Sequences: 18737 Number of extensions: 4540 Number of successful extensions: 292 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 292 Number of HSP's gapped (non-prelim): 0 length of query: 287 length of database: 41,270,998 effective HSP length: 16 effective length of query: 271 effective length of database: 40,971,206 effective search space: 11103196826 effective search space used: 11103196826 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944459|AI944459 bs01f07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs01f07 5', mRNA sequence. (278 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8195 Number of Sequences: 18737 Number of extensions: 8195 Number of successful extensions: 745 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 745 Number of HSP's gapped (non-prelim): 0 length of query: 278 length of database: 41,270,998 effective HSP length: 16 effective length of query: 262 effective length of database: 40,971,206 effective search space: 10734455972 effective search space used: 10734455972 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944485|AI944485 bs02a03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs02a03 5', mRNA sequence. (368 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7074 Number of Sequences: 18737 Number of extensions: 7074 Number of successful extensions: 453 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 453 Number of HSP's gapped (non-prelim): 0 length of query: 368 length of database: 41,270,998 effective HSP length: 17 effective length of query: 351 effective length of database: 40,952,469 effective search space: 14374316619 effective search space used: 14374316619 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944505|AI944505 bs03c10.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs03c10 5', mRNA sequence. (328 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32392-RB feature: mRNA loc=3L:complement(6716152..6716983,6717... 577 e-164 CG32392-RA feature: mRNA loc=3L:complement(6716165..6716983,6717... 577 e-164 >CG32392-RB feature: mRNA loc=3L:complement(6716152..6716983,6717048..6717463, 6717549..6717639, 6719470..6720631);ID=FBan0032392;gene_id=FBgn0052392;gene _sym=CG32392;sym=CG32392;scaffold=AE003561;len=2501 Length = 2501 Score = 577 bits (291), Expect = e-164 Identities = 297/299 (99%) Strand = Plus / Minus Query: 30 attttgttgagctttattggttgaattttcggtaacacaaaaacctttaacaagtatcca 89 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2486 attttgttgagctttattggttgaattttcggtaacacaaaaacctttaacaagtatcca 2427 Query: 90 gtttacaatatgccattccattttttcgatgccatttcgccgccgccgctatgcaattgt 149 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2426 gtttacaatatgccattccattttttcgatgccatttcgccgccgccgctatgcaattgt 2367 Query: 150 gtttggcgcccaggctcgattggaatcctgcggcgaattgagttcttcaccagacacaac 209 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 2366 gtttggcgcccaggctcgattcgaatcctgcggcgaattgagttcttcaccagacacaac 2307 Query: 210 cacaaagttacagccaaccttgatttaatagcaggagtgtgttagtgttacatgtgtgcg 269 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2306 cacaaagttgcagccaaccttgatttaatagcaggagtgtgttagtgttacatgtgtgcg 2247 Query: 270 gaatcagtatcccactcgaaatatatatatgaactaaaactcgaacgcaatcacttaga 328 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2246 gaatcagtatcccactcgaaatatatatatgaactaaaactcgaacgcaatcacttaga 2188 >CG32392-RA feature: mRNA loc=3L:complement(6716165..6716983,6717048..6717463, 6717549..6717639, 6722452..6722775);ID=FBan0032392;gene_id=FBgn0052392;gene _sym=CG32392;sym=CG32392;scaffold=AE003561;len=1650 Length = 1650 Score = 577 bits (291), Expect = e-164 Identities = 297/299 (99%) Strand = Plus / Minus Query: 30 attttgttgagctttattggttgaattttcggtaacacaaaaacctttaacaagtatcca 89 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1648 attttgttgagctttattggttgaattttcggtaacacaaaaacctttaacaagtatcca 1589 Query: 90 gtttacaatatgccattccattttttcgatgccatttcgccgccgccgctatgcaattgt 149 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1588 gtttacaatatgccattccattttttcgatgccatttcgccgccgccgctatgcaattgt 1529 Query: 150 gtttggcgcccaggctcgattggaatcctgcggcgaattgagttcttcaccagacacaac 209 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 1528 gtttggcgcccaggctcgattcgaatcctgcggcgaattgagttcttcaccagacacaac 1469 Query: 210 cacaaagttacagccaaccttgatttaatagcaggagtgtgttagtgttacatgtgtgcg 269 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1468 cacaaagttgcagccaaccttgatttaatagcaggagtgtgttagtgttacatgtgtgcg 1409 Query: 270 gaatcagtatcccactcgaaatatatatatgaactaaaactcgaacgcaatcacttaga 328 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1408 gaatcagtatcccactcgaaatatatatatgaactaaaactcgaacgcaatcacttaga 1350 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9901 Number of Sequences: 18737 Number of extensions: 9901 Number of successful extensions: 749 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 747 Number of HSP's gapped (non-prelim): 2 length of query: 328 length of database: 41,270,998 effective HSP length: 16 effective length of query: 312 effective length of database: 40,971,206 effective search space: 12783016272 effective search space used: 12783016272 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944517|AI944517 bs03d11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs03d11 5', mRNA sequence. (372 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9245 Number of Sequences: 18737 Number of extensions: 9245 Number of successful extensions: 675 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 675 Number of HSP's gapped (non-prelim): 0 length of query: 372 length of database: 41,270,998 effective HSP length: 17 effective length of query: 355 effective length of database: 40,952,469 effective search space: 14538126495 effective search space used: 14538126495 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944536|AI944536 bs03f06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs03f06 5', mRNA sequence. (363 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7066 Number of Sequences: 18737 Number of extensions: 7066 Number of successful extensions: 428 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 428 Number of HSP's gapped (non-prelim): 0 length of query: 363 length of database: 41,270,998 effective HSP length: 17 effective length of query: 346 effective length of database: 40,952,469 effective search space: 14169554274 effective search space used: 14169554274 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944541|AI944541 bs03f11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs03f11 5', mRNA sequence. (362 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6980 Number of Sequences: 18737 Number of extensions: 6980 Number of successful extensions: 459 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 459 Number of HSP's gapped (non-prelim): 0 length of query: 362 length of database: 41,270,998 effective HSP length: 17 effective length of query: 345 effective length of database: 40,952,469 effective search space: 14128601805 effective search space used: 14128601805 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944543|AI944543 bs03g01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs03g01 5', mRNA sequence. (397 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG11815-RA feature: mRNA loc=3L:complement(1950908..1951759);ID=... 430 e-120 >CG11815-RA feature: mRNA loc=3L:complement(1950908..1951759);ID=FBan0011815;gene_ id=FBgn0035299;gene_sym=CG11815;sym=CG11815;scaffold=AE0 03473;len=852 Length = 852 Score = 430 bits (217), Expect = e-120 Identities = 238/245 (97%) Strand = Plus / Minus Query: 153 cctccttcttttgttgctccttctttttgatgtcttcttccttcttttggcaccaagctt 212 |||||||||||| |||||||||||||||||||| |||||||| || ||||||||||| | Sbjct: 700 cctccttcttttcctgctccttctttttgatgtcctcttcctttttctggcaccaagcct 641 Query: 213 tcagttcatcctcgctcatgtcctggattttcttctccttgggcgaggacttggcctcct 272 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 640 tcagttcctcctcgctcatgtcctggattttcttctccttgggcgaggacttggcctcct 581 Query: 273 tcttttcctgctccttctttttgatgtcctcctcctttttcttgcaccactcctttagct 332 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 580 tcttttcctgctccttctttttgatgtcctcctcctttttcttgcaccactcctttagct 521 Query: 333 cctcctcactcatctcctggagacacttctcctcggccgaagatttggccttctggattt 392 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 520 cctcctcactcatctcctggagacacttctcctcggccgaagatttggccttctggattt 461 Query: 393 tcttg 397 ||||| Sbjct: 460 tcttg 456 Score = 402 bits (203), Expect = e-112 Identities = 230/239 (96%) Strand = Plus / Minus Query: 115 ttaatcctttttgttgtcatcgccttcacactttccttcctccttcttttgttgctcctt 174 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 852 ttaatcctttttgttgtcatcgccttcacactttccttcctccttcttttgttgctcctt 793 Query: 175 ctttttgatgtcttcttccttcttttggcaccaagctttcagttcatcctcgctcatgtc 234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 792 ctttttgatgtcttcttccttcttttggcaccaagctttcagttcatcctcgctcatgtc 733 Query: 235 ctggattttcttctccttgggcgaggacttggcctccttcttttcctgctccttcttttt 294 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 732 ctggactttcttctccttgggcgaggacttggcctccttcttttcctgctccttcttttt 673 Query: 295 gatgtcctcctcctttttcttgcaccactcctttagctcctcctcactcatctcctgga 353 ||||||||| |||||||||| |||||| |||| || |||||||| ||||| ||||||| Sbjct: 672 gatgtcctcttcctttttctggcaccaagccttcagttcctcctcgctcatgtcctgga 614 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,675 Number of Sequences: 18737 Number of extensions: 14675 Number of successful extensions: 1511 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1507 Number of HSP's gapped (non-prelim): 2 length of query: 397 length of database: 41,270,998 effective HSP length: 17 effective length of query: 380 effective length of database: 40,952,469 effective search space: 15561938220 effective search space used: 15561938220 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944544|AI944544 bs03g02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs03g02 5', mRNA sequence. (343 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7053 Number of Sequences: 18737 Number of extensions: 7053 Number of successful extensions: 476 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 476 Number of HSP's gapped (non-prelim): 0 length of query: 343 length of database: 41,270,998 effective HSP length: 16 effective length of query: 327 effective length of database: 40,971,206 effective search space: 13397584362 effective search space used: 13397584362 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944550|AI944550 bs03g08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs03g08 5', mRNA sequence. (349 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Mst98Ca-RA feature: mRNA loc=3R:24106421..24107751;ID=FBan001171... 630 e-180 >Mst98Ca-RA feature: mRNA loc=3R:24106421..24107751;ID=FBan0011719;gene_id=FBgn0002 865;gene_sym=Mst98Ca;sym=CG11719;scaffold=AE003764;len=13 31 Length = 1331 Score = 630 bits (318), Expect = e-180 Identities = 318/318 (100%) Strand = Plus / Minus Query: 32 atgcataaatccgatttttatttacagccaatgagtcgtccatgcgttgacaaagtatag 91 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1324 atgcataaatccgatttttatttacagccaatgagtcgtccatgcgttgacaaagtatag 1265 Query: 92 agaactgtagacttttttggtggtgtttgagcagaacggcgagaatacactatggcaatc 151 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1264 agaactgtagacttttttggtggtgtttgagcagaacggcgagaatacactatggcaatc 1205 Query: 152 tgtattggtgatagacaagttggtccactgggcaccggtttctgacaacaatccaggcag 211 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1204 tgtattggtgatagacaagttggtccactgggcaccggtttctgacaacaatccaggcag 1145 Query: 212 cacaacgatgatgttaacaggggccgctgggtccacaaggcacttgaggaccgcaaggac 271 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1144 cacaacgatgatgttaacaggggccgctgggtccacaaggcacttgaggaccgcaaggac 1085 Query: 272 caactgggccgcagtgggtattccagggagttggggcgcacgggtagcaggggccgcact 331 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1084 caactgggccgcagtgggtattccagggagttggggcgcacgggtagcaggggccgcact 1025 Query: 332 cgggtgactcgtacggac 349 |||||||||||||||||| Sbjct: 1024 cgggtgactcgtacggac 1007 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5475 Number of Sequences: 18737 Number of extensions: 5475 Number of successful extensions: 409 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 407 Number of HSP's gapped (non-prelim): 2 length of query: 349 length of database: 41,270,998 effective HSP length: 16 effective length of query: 333 effective length of database: 40,971,206 effective search space: 13643411598 effective search space used: 13643411598 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944556|AI944556 bs03h03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs03h03 5', mRNA sequence. (344 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7401 Number of Sequences: 18737 Number of extensions: 7401 Number of successful extensions: 555 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 555 Number of HSP's gapped (non-prelim): 0 length of query: 344 length of database: 41,270,998 effective HSP length: 16 effective length of query: 328 effective length of database: 40,971,206 effective search space: 13438555568 effective search space used: 13438555568 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944573|AI944573 bs02b04.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs02b04 5', mRNA sequence. (471 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,324 Number of Sequences: 18737 Number of extensions: 10324 Number of successful extensions: 231 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 231 Number of HSP's gapped (non-prelim): 0 length of query: 471 length of database: 41,270,998 effective HSP length: 17 effective length of query: 454 effective length of database: 40,952,469 effective search space: 18592420926 effective search space used: 18592420926 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944580|AI944580 bs02c01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs02c01 5', mRNA sequence. (459 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,034 Number of Sequences: 18737 Number of extensions: 10034 Number of successful extensions: 232 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 232 Number of HSP's gapped (non-prelim): 0 length of query: 459 length of database: 41,270,998 effective HSP length: 17 effective length of query: 442 effective length of database: 40,952,469 effective search space: 18100991298 effective search space used: 18100991298 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944581|AI944581 bs02c02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs02c02 5', mRNA sequence. (483 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32652-RA feature: mRNA loc=X:complement(12141720..12141970,121... 456 e-128 >CG32652-RA feature: mRNA loc=X:complement(12141720..12141970,12142025..12142249, 12142304..12142408);ID=FBan0032652;gene_id=FBgn0052652;g ene_sym=CG32652;sym=CG32652;scaffold=AE003489;len=581 Length = 581 Score = 456 bits (230), Expect = e-128 Identities = 248/253 (98%), Gaps = 2/253 (0%) Strand = Plus / Plus Query: 231 attcccatcccatcccaaattatttaatgcgcttatccaaaatgcaaactaatgatgatc 290 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 attcccatcccatcccaaattatttaatgcgcttatccaaaatgcaaactaatgatgatc 60 Query: 291 gttccgcctacactggcttaattaacagtctgaacaagctaggatagttgaaatggtgtt 350 ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 61 gttccgcctacactgccttaattaa--gtctgaacaagctaggatagttgaaatggtgtt 118 Query: 351 caattcgatggtaccagtcccgttggacgagaggattgcatcggtttggatataaatgtt 410 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct: 119 caattcgatggtaccagtcccgttggacgagaggattgcatcgttttggatacaaatgtt 178 Query: 411 gcgcttacaatcaatgcaagccatagaagcctactcttcatacactatgttaataagcca 470 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 179 gcgcttacaatcaatgcaagccatagaagcctactcttcatacactatgttaataagcca 238 Query: 471 tcttatgatcagt 483 ||||||||||||| Sbjct: 239 tcttatgatcagt 251 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9011 Number of Sequences: 18737 Number of extensions: 9011 Number of successful extensions: 211 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 209 Number of HSP's gapped (non-prelim): 2 length of query: 483 length of database: 41,270,998 effective HSP length: 17 effective length of query: 466 effective length of database: 40,952,469 effective search space: 19083850554 effective search space used: 19083850554 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944599|AI944599 bs02e02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs02e02 5', mRNA sequence. (394 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7309 Number of Sequences: 18737 Number of extensions: 7309 Number of successful extensions: 606 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 606 Number of HSP's gapped (non-prelim): 0 length of query: 394 length of database: 41,270,998 effective HSP length: 17 effective length of query: 377 effective length of database: 40,952,469 effective search space: 15439080813 effective search space used: 15439080813 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944633|AI944633 bs02h06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs02h06 5', mRNA sequence. (429 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9367 Number of Sequences: 18737 Number of extensions: 9367 Number of successful extensions: 624 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 624 Number of HSP's gapped (non-prelim): 0 length of query: 429 length of database: 41,270,998 effective HSP length: 17 effective length of query: 412 effective length of database: 40,952,469 effective search space: 16872417228 effective search space used: 16872417228 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944643|AI944643 bs03a05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs03a05 5', mRNA sequence. (361 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6113 Number of Sequences: 18737 Number of extensions: 6113 Number of successful extensions: 389 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 389 Number of HSP's gapped (non-prelim): 0 length of query: 361 length of database: 41,270,998 effective HSP length: 17 effective length of query: 344 effective length of database: 40,952,469 effective search space: 14087649336 effective search space used: 14087649336 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944680|AI944680 bs04b07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs04b07 5', mRNA sequence. (529 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG10576-RB feature: mRNA loc=3L:complement(5721278..5721832,5721... 1011 0.0 CG10576-RA feature: mRNA loc=3L:complement(5721278..5721832,5721... 1011 0.0 >CG10576-RB feature: mRNA loc=3L:complement(5721278..5721832,5721896..5722023, 5722356..5722581,5722863..5723084,5723742..5723904, 5723967..5724103, 5724395..5724839);ID=FBan0010576;gene_id=FBgn0035630;gene _sym=CG10576;sym=CG10576;scaffold=AE003565;len=1876 Length = 1876 Score = 1011 bits (510), Expect = 0.0 Identities = 519/522 (99%) Strand = Plus / Minus Query: 8 attttaagatcatttagcgttaaaattgttacaatttgatgacagttcttgctttgcttt 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1800 attttaagatcatttagcgttaaaattgttacaatttgatgacagttcttgctttgcttt 1741 Query: 68 ttcgttgcgatgatgttgaacagaccgataaacgaaggcagcttatagtaaaggaaataa 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1740 ttcgttgcgatgatgttgaacagaccgataaacgaaggcagcttatagtaaaggaaataa 1681 Query: 128 agaggtaaagttggcgcgggaccgaccgaccgcccgccttgttgatggatggaggatttc 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1680 agaggtaaagttggcgcgggaccgaccgaccgcccgccttgttgatggatggaggatttc 1621 Query: 188 tggggaaatgtatcctcaaattgttgccgtcttttcttctgtcctgttctgttgtcaaaa 247 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1620 tggggaaatgtatcctcaaattgttgccgtcttctcttctgtcctgttctgttgtcaaaa 1561 Query: 248 gggtcctctaatacgcaacgaattcgatagtaaaaatctgtggagcgcagcgttgggcag 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1560 gggtcctctaatacgcaacgaattcgatagtaaaaatctgtggagcgcagcgttgggcag 1501 Query: 308 cgcaattgttcacattgtgtttccgttgatggcttggcggtgcggatcatcatcagcggg 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1500 cgcaattgttcacattgtgtttccgttgatggcttggcggtgcggatcatcatcagcggg 1441 Query: 368 ctggtctatgccttggtctccacggccggcgccgtttccacctttgtcgccgctccagct 427 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 1440 ctggtctatgccttggtctccacggccggcgccgtttccacctttgtcgccgccccagct 1381 Query: 428 gctgccttcttgcccttacccttgcccttcacaggacccaaaggctgcgcgagcagagtc 487 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1380 gttgccttcttgcccttacccttgcccttcacaggacccaaaggctgcgcgagcagagtc 1321 Query: 488 ttgagctcctcctgcgcaacactgtactcgctcacatagttc 529 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1320 ttgagctcctcctgcgcaacactgtactcgctcacatagttc 1279 >CG10576-RA feature: mRNA loc=3L:complement(5721278..5721832,5721896..5722023, 5722356..5722581,5722863..5723084,5723742..5723904, 5723967..5724103,5724395..5724492, 5724649..5725014);ID=FBan0010576;gene_id=FBgn0035630;gene _sym=CG10576;sym=CG10576;scaffold=AE003565;len=1895 Length = 1895 Score = 1011 bits (510), Expect = 0.0 Identities = 519/522 (99%) Strand = Plus / Minus Query: 8 attttaagatcatttagcgttaaaattgttacaatttgatgacagttcttgctttgcttt 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1819 attttaagatcatttagcgttaaaattgttacaatttgatgacagttcttgctttgcttt 1760 Query: 68 ttcgttgcgatgatgttgaacagaccgataaacgaaggcagcttatagtaaaggaaataa 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1759 ttcgttgcgatgatgttgaacagaccgataaacgaaggcagcttatagtaaaggaaataa 1700 Query: 128 agaggtaaagttggcgcgggaccgaccgaccgcccgccttgttgatggatggaggatttc 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1699 agaggtaaagttggcgcgggaccgaccgaccgcccgccttgttgatggatggaggatttc 1640 Query: 188 tggggaaatgtatcctcaaattgttgccgtcttttcttctgtcctgttctgttgtcaaaa 247 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1639 tggggaaatgtatcctcaaattgttgccgtcttctcttctgtcctgttctgttgtcaaaa 1580 Query: 248 gggtcctctaatacgcaacgaattcgatagtaaaaatctgtggagcgcagcgttgggcag 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1579 gggtcctctaatacgcaacgaattcgatagtaaaaatctgtggagcgcagcgttgggcag 1520 Query: 308 cgcaattgttcacattgtgtttccgttgatggcttggcggtgcggatcatcatcagcggg 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1519 cgcaattgttcacattgtgtttccgttgatggcttggcggtgcggatcatcatcagcggg 1460 Query: 368 ctggtctatgccttggtctccacggccggcgccgtttccacctttgtcgccgctccagct 427 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 1459 ctggtctatgccttggtctccacggccggcgccgtttccacctttgtcgccgccccagct 1400 Query: 428 gctgccttcttgcccttacccttgcccttcacaggacccaaaggctgcgcgagcagagtc 487 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1399 gttgccttcttgcccttacccttgcccttcacaggacccaaaggctgcgcgagcagagtc 1340 Query: 488 ttgagctcctcctgcgcaacactgtactcgctcacatagttc 529 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1339 ttgagctcctcctgcgcaacactgtactcgctcacatagttc 1298 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,608 Number of Sequences: 18737 Number of extensions: 13608 Number of successful extensions: 411 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 409 Number of HSP's gapped (non-prelim): 2 length of query: 529 length of database: 41,270,998 effective HSP length: 17 effective length of query: 512 effective length of database: 40,952,469 effective search space: 20967664128 effective search space used: 20967664128 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944699|AI944699 bs04d03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs04d03 5', mRNA sequence. (487 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value BEST:GH12489-RA feature: mRNA loc=3L:join(12089719..12090523,120... 771 0.0 >BEST:GH12489-RA feature: mRNA loc=3L:join(12089719..12090523, 12090576..12091383);ID=FBan0011534;gene_id=FBgn0046296;g ene_sym=BEST:GH12489;sym=CG11534;scaffold=AE003542;len=1 613 Length = 1613 Score = 771 bits (389), Expect = 0.0 Identities = 392/393 (99%) Strand = Plus / Minus Query: 77 ttatatttagcatcgttccgcactcggcgcacttgtatccctgggaggcgagtccgattt 136 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 805 ttatatttagcatcgtcccgcactcggcgcacttgtatccctgggaggcgagtccgattt 746 Query: 137 ctggacatatctccgaaatgggatgctgccgctctgaaaccaggacatgggcacaaaccc 196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 745 ctggacatatctccgaaatgggatgctgccgctctgaaaccaggacatgggcacaaaccc 686 Query: 197 tcttcacgccatcgatgcacttctgatggaccaggaatccgcaatcgctgcacacgtacg 256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 685 tcttcacgccatcgatgcacttctgatggaccaggaatccgcaatcgctgcacacgtacg 626 Query: 257 agttctgcaccacactccaaataatggtggtgcagtggtcacagtagttcctcttggcgg 316 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 625 agttctgcaccacactccaaataatggtggtgcagtggtcacagtagttcctcttggcgg 566 Query: 317 ctgcctgcagacgattccgtttgccatgatgcgggtgatggggcacaaaatgatgaccca 376 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 565 ctgcctgcagacgattccgtttgccatgatgcgggtgatggggcacaaaatgatgaccca 506 Query: 377 ccacagcacgtatggcattcataactaccatgtccgacgatagggaatgctgctcctggg 436 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 505 ccacagcacgtatggcattcataactaccatgtccgacgatagggaatgctgctcctggg 446 Query: 437 cctcctccagctcctgcagtgagtatcgcaaat 469 ||||||||||||||||||||||||||||||||| Sbjct: 445 cctcctccagctcctgcagtgagtatcgcaaat 413 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,936 Number of Sequences: 18737 Number of extensions: 12936 Number of successful extensions: 363 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 361 Number of HSP's gapped (non-prelim): 2 length of query: 487 length of database: 41,270,998 effective HSP length: 17 effective length of query: 470 effective length of database: 40,952,469 effective search space: 19247660430 effective search space used: 19247660430 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944703|AI944703 bs04d07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs04d07 5', mRNA sequence. (632 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value drongo-RB feature: mRNA loc=2L:complement(835249..836243,836639.... 682 0.0 >drongo-RB feature: mRNA loc=2L:complement(835249..836243,836639..836955, 837018..837212,838211..839043, 851564..852726);ID=FBan0003365;gene_id=FBgn0020304;gene_ sym=drongo;sym=CG3365;scaffold=AE003588;len=3503 Length = 3503 Score = 682 bits (344), Expect = 0.0 Identities = 356/360 (98%) Strand = Plus / Minus Query: 8 gtgtgtgtgcggtgcgatttatcgaaaaccacttttccgattgcccgtgttattgtttac 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 360 gtgtgtgtgcggtgcgatttatcgaaaaccacttttccgattgcccgtgttattgtttac 301 Query: 68 ttttcacttcttcgactcgcagaatttcgcttcaattcaatctatttacaccgagtgccg 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 300 ttttcacttcttcgactcgcagaatttcgcttcaattcaatctatttacaccgagtgccg 241 Query: 128 ctgcaattgccacacagatttcagatttcaattgaaatttcgacgctgcgaatgcactcg 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 240 ctgcaattgccacacagatttcagatttcaattgaaatttcgacgctgcgaatgcactcg 181 Query: 188 ccacttttgctgcttccccctcttcttgtttgtttgcagtgcggattcgaagacgaatgg 247 ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||| Sbjct: 180 ccacttttgctgcttccccttctccttgtttgtttgcagtgcggattcgaagacgagtgg 121 Query: 248 aaaacgaacagcgaaacgaaacggaacgaaaccaaacagcacagcgcactcgaaacaaaa 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 120 aaaacgaacagcgaaacgaaacggaacgaaaccaaacagcacagcgcactcgaaacaaaa 61 Query: 308 tagcgcgactcgactcaacacaatttcgacgcaaattccgaccgctcgcctacaacaaca 367 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 60 tagcgcgactcgactcaacacaattccgacgcaaattccgaccgctcgcctacaacaaca 1 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 21,282 Number of Sequences: 18737 Number of extensions: 21282 Number of successful extensions: 1468 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1466 Number of HSP's gapped (non-prelim): 2 length of query: 632 length of database: 41,270,998 effective HSP length: 17 effective length of query: 615 effective length of database: 40,952,469 effective search space: 25185768435 effective search space used: 25185768435 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944708|AI944708 bs04d12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs04d12 5', mRNA sequence. (642 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,673 Number of Sequences: 18737 Number of extensions: 11673 Number of successful extensions: 221 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 221 Number of HSP's gapped (non-prelim): 0 length of query: 642 length of database: 41,270,998 effective HSP length: 17 effective length of query: 625 effective length of database: 40,952,469 effective search space: 25595293125 effective search space used: 25595293125 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944725|AI944725 bs04f09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs04f09 5', mRNA sequence. (636 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG9485-RC feature: mRNA loc=2R:join(16357449..16357530,16357975.... 642 0.0 CG9485-RB feature: mRNA loc=2R:join(16356972..16357267,16357975.... 642 0.0 CG9485-RA feature: mRNA loc=2R:join(16356231..16356334,16357975.... 642 0.0 >CG9485-RC feature: mRNA loc=2R:join(16357449..16357530,16357975..16358315, 16358379..16358736,16358787..16360190,16360248..16361103, 16361160..16361337,16361398..16361567, 16361632..16363120);ID=FBan0009485;gene_id=FBgn0034618;ge ne_sym=CG9485;sym=CG9485;scaffold=AE003453;len=4878 Length = 4878 Score = 642 bits (324), Expect = 0.0 Identities = 327/328 (99%) Strand = Plus / Minus Query: 309 cgatggaccctttcgttccacgccggtgtacgggataacctccttttcggctaggctttg 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4060 cgatggaccctttcgttccacgccggtgtacgggataacctccttttcggctaggctttg 4001 Query: 369 cataaaccggagtacggcatactggaggccaacgagctccacggctgatccgtcgcgcgg 428 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4000 cataaaccggagtacggcatactggaggccaacgagctccacggctgatccgtcgcgcgg 3941 Query: 429 cgtacttggtcgtcccttgtttccggccttctgtgaggatcccattttgtccatccaagt 488 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3940 cgtacttggacgtcccttgtttccggccttctgtgaggatcccattttgtccatccaagt 3881 Query: 489 gccgcagttgaagttattgcctccgaatacaaagccagtctccgggtgaattccgatctg 548 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3880 gccgcagttgaagttattgcctccgaatacaaagccagtctccgggtgaattccgatctg 3821 Query: 549 attgttaaagccctggtccaccatgtgcgcatcgatctcatagcctgcattgcgctccct 608 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3820 attgttaaagccctggtccaccatgtgcgcatcgatctcatagcctgcattgcgctccct 3761 Query: 609 atactgcaagccctgaaaatgcacctgc 636 |||||||||||||||||||||||||||| Sbjct: 3760 atactgcaagccctgaaaatgcacctgc 3733 Score = 547 bits (276), Expect = e-155 Identities = 276/276 (100%) Strand = Plus / Minus Query: 35 aacgcttaaaaacaattgcaactttaatagaataggaatagcaaaatttcaagggacctc 94 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4878 aacgcttaaaaacaattgcaactttaatagaataggaatagcaaaatttcaagggacctc 4819 Query: 95 aggcatcgaatctcattccatcttgtatccgtacaattatcaaacgtaacactaataaca 154 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4818 aggcatcgaatctcattccatcttgtatccgtacaattatcaaacgtaacactaataaca 4759 Query: 155 gtttttggtagcaactaacaggtttgaatatgagtatttacggtggtttaggccacgtct 214 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4758 gtttttggtagcaactaacaggtttgaatatgagtatttacggtggtttaggccacgtct 4699 Query: 215 gctcccaaggagtgcagatcgtacaggacttccaaaatggcagcaacactccaggcctgc 274 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4698 gctcccaaggagtgcagatcgtacaggacttccaaaatggcagcaacactccaggcctgc 4639 Query: 275 gtgcgacaggagtcaccgcagtaggagccattatcg 310 |||||||||||||||||||||||||||||||||||| Sbjct: 4638 gtgcgacaggagtcaccgcagtaggagccattatcg 4603 >CG9485-RB feature: mRNA loc=2R:join(16356972..16357267,16357975..16358315, 16358379..16358736,16358787..16360190,16360248..16361103, 16361160..16361337,16361398..16361567, 16361632..16363120);ID=FBan0009485;gene_id=FBgn0034618;ge ne_sym=CG9485;sym=CG9485;scaffold=AE003453;len=5092 Length = 5092 Score = 642 bits (324), Expect = 0.0 Identities = 327/328 (99%) Strand = Plus / Minus Query: 309 cgatggaccctttcgttccacgccggtgtacgggataacctccttttcggctaggctttg 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4274 cgatggaccctttcgttccacgccggtgtacgggataacctccttttcggctaggctttg 4215 Query: 369 cataaaccggagtacggcatactggaggccaacgagctccacggctgatccgtcgcgcgg 428 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4214 cataaaccggagtacggcatactggaggccaacgagctccacggctgatccgtcgcgcgg 4155 Query: 429 cgtacttggtcgtcccttgtttccggccttctgtgaggatcccattttgtccatccaagt 488 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4154 cgtacttggacgtcccttgtttccggccttctgtgaggatcccattttgtccatccaagt 4095 Query: 489 gccgcagttgaagttattgcctccgaatacaaagccagtctccgggtgaattccgatctg 548 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4094 gccgcagttgaagttattgcctccgaatacaaagccagtctccgggtgaattccgatctg 4035 Query: 549 attgttaaagccctggtccaccatgtgcgcatcgatctcatagcctgcattgcgctccct 608 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4034 attgttaaagccctggtccaccatgtgcgcatcgatctcatagcctgcattgcgctccct 3975 Query: 609 atactgcaagccctgaaaatgcacctgc 636 |||||||||||||||||||||||||||| Sbjct: 3974 atactgcaagccctgaaaatgcacctgc 3947 Score = 547 bits (276), Expect = e-155 Identities = 276/276 (100%) Strand = Plus / Minus Query: 35 aacgcttaaaaacaattgcaactttaatagaataggaatagcaaaatttcaagggacctc 94 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5092 aacgcttaaaaacaattgcaactttaatagaataggaatagcaaaatttcaagggacctc 5033 Query: 95 aggcatcgaatctcattccatcttgtatccgtacaattatcaaacgtaacactaataaca 154 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5032 aggcatcgaatctcattccatcttgtatccgtacaattatcaaacgtaacactaataaca 4973 Query: 155 gtttttggtagcaactaacaggtttgaatatgagtatttacggtggtttaggccacgtct 214 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4972 gtttttggtagcaactaacaggtttgaatatgagtatttacggtggtttaggccacgtct 4913 Query: 215 gctcccaaggagtgcagatcgtacaggacttccaaaatggcagcaacactccaggcctgc 274 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4912 gctcccaaggagtgcagatcgtacaggacttccaaaatggcagcaacactccaggcctgc 4853 Query: 275 gtgcgacaggagtcaccgcagtaggagccattatcg 310 |||||||||||||||||||||||||||||||||||| Sbjct: 4852 gtgcgacaggagtcaccgcagtaggagccattatcg 4817 >CG9485-RA feature: mRNA loc=2R:join(16356231..16356334,16357975..16358315, 16358379..16358736,16358787..16360190,16360248..16361103, 16361160..16361337,16361398..16361567, 16361632..16363120);ID=FBan0009485;gene_id=FBgn0034618;ge ne_sym=CG9485;sym=CG9485;scaffold=AE003453;len=4900 Length = 4900 Score = 642 bits (324), Expect = 0.0 Identities = 327/328 (99%) Strand = Plus / Minus Query: 309 cgatggaccctttcgttccacgccggtgtacgggataacctccttttcggctaggctttg 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4082 cgatggaccctttcgttccacgccggtgtacgggataacctccttttcggctaggctttg 4023 Query: 369 cataaaccggagtacggcatactggaggccaacgagctccacggctgatccgtcgcgcgg 428 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4022 cataaaccggagtacggcatactggaggccaacgagctccacggctgatccgtcgcgcgg 3963 Query: 429 cgtacttggtcgtcccttgtttccggccttctgtgaggatcccattttgtccatccaagt 488 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3962 cgtacttggacgtcccttgtttccggccttctgtgaggatcccattttgtccatccaagt 3903 Query: 489 gccgcagttgaagttattgcctccgaatacaaagccagtctccgggtgaattccgatctg 548 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3902 gccgcagttgaagttattgcctccgaatacaaagccagtctccgggtgaattccgatctg 3843 Query: 549 attgttaaagccctggtccaccatgtgcgcatcgatctcatagcctgcattgcgctccct 608 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3842 attgttaaagccctggtccaccatgtgcgcatcgatctcatagcctgcattgcgctccct 3783 Query: 609 atactgcaagccctgaaaatgcacctgc 636 |||||||||||||||||||||||||||| Sbjct: 3782 atactgcaagccctgaaaatgcacctgc 3755 Score = 547 bits (276), Expect = e-155 Identities = 276/276 (100%) Strand = Plus / Minus Query: 35 aacgcttaaaaacaattgcaactttaatagaataggaatagcaaaatttcaagggacctc 94 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4900 aacgcttaaaaacaattgcaactttaatagaataggaatagcaaaatttcaagggacctc 4841 Query: 95 aggcatcgaatctcattccatcttgtatccgtacaattatcaaacgtaacactaataaca 154 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4840 aggcatcgaatctcattccatcttgtatccgtacaattatcaaacgtaacactaataaca 4781 Query: 155 gtttttggtagcaactaacaggtttgaatatgagtatttacggtggtttaggccacgtct 214 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4780 gtttttggtagcaactaacaggtttgaatatgagtatttacggtggtttaggccacgtct 4721 Query: 215 gctcccaaggagtgcagatcgtacaggacttccaaaatggcagcaacactccaggcctgc 274 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4720 gctcccaaggagtgcagatcgtacaggacttccaaaatggcagcaacactccaggcctgc 4661 Query: 275 gtgcgacaggagtcaccgcagtaggagccattatcg 310 |||||||||||||||||||||||||||||||||||| Sbjct: 4660 gtgcgacaggagtcaccgcagtaggagccattatcg 4625 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,819 Number of Sequences: 18737 Number of extensions: 11819 Number of successful extensions: 234 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 228 Number of HSP's gapped (non-prelim): 6 length of query: 636 length of database: 41,270,998 effective HSP length: 17 effective length of query: 619 effective length of database: 40,952,469 effective search space: 25349578311 effective search space used: 25349578311 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944739|AI944739 bs04g11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs04g11 5', mRNA sequence. (626 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,143 Number of Sequences: 18737 Number of extensions: 13143 Number of successful extensions: 377 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 377 Number of HSP's gapped (non-prelim): 0 length of query: 626 length of database: 41,270,998 effective HSP length: 17 effective length of query: 609 effective length of database: 40,952,469 effective search space: 24940053621 effective search space used: 24940053621 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944754|AI944754 bs05b03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs05b03 5', mRNA sequence. (420 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7584 Number of Sequences: 18737 Number of extensions: 7584 Number of successful extensions: 603 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 603 Number of HSP's gapped (non-prelim): 0 length of query: 420 length of database: 41,270,998 effective HSP length: 17 effective length of query: 403 effective length of database: 40,952,469 effective search space: 16503845007 effective search space used: 16503845007 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944756|AI944756 bs05b05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs05b05 5', mRNA sequence. (369 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG33287-RA feature: mRNA loc=3L:complement(20884134..20884265,20... 664 0.0 >CG33287-RA feature: mRNA loc=3L:complement(20884134..20884265,20884335..20884679, 20884733..20884904,20884966..20886389,20886455..20886980, 20887194..20887279,20887330..20887721, 20887777..20887939);ID=FBan0033287;gene_id=FBgn0053287;ge ne_sym=CG33287;sym=CG33287;scaffold=AE003593;len=3240 Length = 3240 Score = 664 bits (335), Expect = 0.0 Identities = 335/335 (100%) Strand = Plus / Minus Query: 35 atttctgtttcatttattttggttttagcgtctaaagcagtctttttgccatttacattt 94 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2264 atttctgtttcatttattttggttttagcgtctaaagcagtctttttgccatttacattt 2205 Query: 95 gcaaaagacgacctatccctaaaactaaaagcacttgatcttccatccgcgtttttgttt 154 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2204 gcaaaagacgacctatccctaaaactaaaagcacttgatcttccatccgcgtttttgttt 2145 Query: 155 tcccacttctccgcctttttctccgactttttggacacttggacctgaatttgatctaac 214 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2144 tcccacttctccgcctttttctccgactttttggacacttggacctgaatttgatctaac 2085 Query: 215 aattcttggggcctctgcaagtatttttctttgatgtcctccaaagtggatagtaatcca 274 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2084 aattcttggggcctctgcaagtatttttctttgatgtcctccaaagtggatagtaatcca 2025 Query: 275 cacgccgtggctttattcccacactcaatagatggcataagctcagcagcagaagagaat 334 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2024 cacgccgtggctttattcccacactcaatagatggcataagctcagcagcagaagagaat 1965 Query: 335 tcaatggcaaccgtcttttcgaaaatgggaaaagc 369 ||||||||||||||||||||||||||||||||||| Sbjct: 1964 tcaatggcaaccgtcttttcgaaaatgggaaaagc 1930 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9605 Number of Sequences: 18737 Number of extensions: 9605 Number of successful extensions: 790 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 789 Number of HSP's gapped (non-prelim): 1 length of query: 369 length of database: 41,270,998 effective HSP length: 17 effective length of query: 352 effective length of database: 40,952,469 effective search space: 14415269088 effective search space used: 14415269088 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944760|AI944760 bs05b09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs05b09 5', mRNA sequence. (352 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7832 Number of Sequences: 18737 Number of extensions: 7832 Number of successful extensions: 628 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 628 Number of HSP's gapped (non-prelim): 0 length of query: 352 length of database: 41,270,998 effective HSP length: 17 effective length of query: 335 effective length of database: 40,952,469 effective search space: 13719077115 effective search space used: 13719077115 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944767|AI944767 bs05c05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs05c05 5', mRNA sequence. (261 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5479 Number of Sequences: 18737 Number of extensions: 5479 Number of successful extensions: 693 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 693 Number of HSP's gapped (non-prelim): 0 length of query: 261 length of database: 41,270,998 effective HSP length: 16 effective length of query: 245 effective length of database: 40,971,206 effective search space: 10037945470 effective search space used: 10037945470 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944786|AI944786 bs05e01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs05e01 5', mRNA sequence. (132 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 0 Number of Sequences: 18737 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 132 length of database: 41,270,998 effective HSP length: 16 effective length of query: 116 effective length of database: 40,971,206 effective search space: 4752659896 effective search space used: 4752659896 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944792|AI944792 bs05e07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs05e07 5', mRNA sequence. (344 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG30404-RB feature: mRNA loc=2R:complement(16760326..16761247,16... 628 e-180 CG30404-RA feature: mRNA loc=2R:complement(16760326..16761247,16... 628 e-180 >CG30404-RB feature: mRNA loc=2R:complement(16760326..16761247, 16762632..16763396);ID=FBan0030404;gene_id=FBgn0050404;g ene_sym=CG30404;sym=CG30404;scaffold=AE003455;len=1687 Length = 1687 Score = 628 bits (317), Expect = e-180 Identities = 332/337 (98%) Strand = Plus / Plus Query: 8 aagaacccatcggtcggattggtgcgcgtccagacgccaccgcgcatcatcaccctcacc 67 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 514 aagaacccatcggtcggattggtgcgcgtccagacgccaccgcgcattatcaccctcacc 573 Query: 68 gatcaacactttccctcggcctccgaagagagctcgcccatccgggccaatggtcatcat 127 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 574 gatcaacactttccctcggcctccgaggagagctcgcccatccgggccaatggtcatcat 633 Query: 128 ttgtatggtaatgatctcgacgaggacgccgacgatgaggaggtgcatgccacccaatat 187 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 634 ttgtatggtaatgatctcgacgaggacgccgacgatgaggaggtccatgccacccaatat 693 Query: 188 gtgcgtgccaatggagtcgcccgtatgggatttcaaggcaatgacaccaattccgttgaa 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 694 gtgcgtgccaatggagtcgcccgtatgggatttcaaggcaatgacaccaattccgttgaa 753 Query: 248 tcggactcgcagttgaccacgggcagtgccagcaagcgctcgcagctgaatcaacagcag 307 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 754 tcggactcgcagttgaccacaggcagtgccagcaagcgctcgcagctgaatcaacagcag 813 Query: 308 cacaacaacctggatgcctcaatgctgacgcaccgag 344 ||||||||||||||||||||||||||| ||||||||| Sbjct: 814 cacaacaacctggatgcctcaatgctggcgcaccgag 850 >CG30404-RA feature: mRNA loc=2R:complement(16760326..16761247,16762632..16763234, 16763406..16763512);ID=FBan0030404;gene_id=FBgn0050404;g ene_sym=CG30404;sym=CG30404;scaffold=AE003455;len=1632 Length = 1632 Score = 628 bits (317), Expect = e-180 Identities = 332/337 (98%) Strand = Plus / Plus Query: 8 aagaacccatcggtcggattggtgcgcgtccagacgccaccgcgcatcatcaccctcacc 67 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 459 aagaacccatcggtcggattggtgcgcgtccagacgccaccgcgcattatcaccctcacc 518 Query: 68 gatcaacactttccctcggcctccgaagagagctcgcccatccgggccaatggtcatcat 127 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 519 gatcaacactttccctcggcctccgaggagagctcgcccatccgggccaatggtcatcat 578 Query: 128 ttgtatggtaatgatctcgacgaggacgccgacgatgaggaggtgcatgccacccaatat 187 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 579 ttgtatggtaatgatctcgacgaggacgccgacgatgaggaggtccatgccacccaatat 638 Query: 188 gtgcgtgccaatggagtcgcccgtatgggatttcaaggcaatgacaccaattccgttgaa 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 639 gtgcgtgccaatggagtcgcccgtatgggatttcaaggcaatgacaccaattccgttgaa 698 Query: 248 tcggactcgcagttgaccacgggcagtgccagcaagcgctcgcagctgaatcaacagcag 307 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 699 tcggactcgcagttgaccacaggcagtgccagcaagcgctcgcagctgaatcaacagcag 758 Query: 308 cacaacaacctggatgcctcaatgctgacgcaccgag 344 ||||||||||||||||||||||||||| ||||||||| Sbjct: 759 cacaacaacctggatgcctcaatgctggcgcaccgag 795 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,869 Number of Sequences: 18737 Number of extensions: 12869 Number of successful extensions: 983 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 979 Number of HSP's gapped (non-prelim): 4 length of query: 344 length of database: 41,270,998 effective HSP length: 16 effective length of query: 328 effective length of database: 40,971,206 effective search space: 13438555568 effective search space used: 13438555568 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944797|AI944797 bs05e12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs05e12 5', mRNA sequence. (330 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5152 Number of Sequences: 18737 Number of extensions: 5152 Number of successful extensions: 366 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 366 Number of HSP's gapped (non-prelim): 0 length of query: 330 length of database: 41,270,998 effective HSP length: 16 effective length of query: 314 effective length of database: 40,971,206 effective search space: 12864958684 effective search space used: 12864958684 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944807|AI944807 bs05f10.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs05f10 5', mRNA sequence. (410 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7549 Number of Sequences: 18737 Number of extensions: 7549 Number of successful extensions: 530 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 530 Number of HSP's gapped (non-prelim): 0 length of query: 410 length of database: 41,270,998 effective HSP length: 17 effective length of query: 393 effective length of database: 40,952,469 effective search space: 16094320317 effective search space used: 16094320317 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944813|AI944813 bs05g04.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs05g04 5', mRNA sequence. (146 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2573 Number of Sequences: 18737 Number of extensions: 2573 Number of successful extensions: 210 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 210 Number of HSP's gapped (non-prelim): 0 length of query: 146 length of database: 41,270,998 effective HSP length: 16 effective length of query: 130 effective length of database: 40,971,206 effective search space: 5326256780 effective search space used: 5326256780 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944815|AI944815 bs05g06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs05g06 5', mRNA sequence. (438 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG1287-RA feature: mRNA loc=3R:complement(3326692..3328117);ID=F... 803 0.0 >CG1287-RA feature: mRNA loc=3R:complement(3326692..3328117);ID=FBan0001287;gene_i d=FBgn0037506;gene_sym=CG1287;sym=CG1287;scaffold=AE00367 1;len=1426 Length = 1426 Score = 803 bits (405), Expect = 0.0 Identities = 408/409 (99%) Strand = Plus / Minus Query: 30 acatttcaaaatatgaaaatgggtaattctaactaaattatacaatttgtggtaaaaccc 89 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1349 acatttcaaaatatgaaaatgggtaattctaactaaattatacaatttgtggtaaaaccc 1290 Query: 90 caggcggtttattttgtgtatctgaataaatttaggttttcctacaccttaaaccaactc 149 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1289 caggcggtttattttgtgtatctgaataaatttaggttttcctacaccttaaaccaactc 1230 Query: 150 agttcttcctcttttggtctccagccaatataattgcgatgcggataaagatgttgagcg 209 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1229 agttcttcctcttttggtctccagccaatataattgcgatgcggataaagatgttgagcg 1170 Query: 210 catccatgtaaatggccagggcatgattaattggatcgtaagggaatttactgtactggg 269 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1169 catccatgtaaatggccagggcatgattaattggatcgtaagggaatttactgtactggg 1110 Query: 270 gatacaactccgccgacttaactatcctttgggtatcgtacagaagaaatccgctgaaca 329 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1109 gatacaactccgccgacttaacgatcctttgggtatcgtacagaagaaatccgctgaaca 1050 Query: 330 gaatcagtccgccgtacaacgacatgctggccagtcccgcccccactgcagtagtgggcg 389 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1049 gaatcagtccgccgtacaacgacatgctggccagtcccgcccccactgcagtagtgggcg 990 Query: 390 gcaaccacatggaggctagcgaggaggcgaagaccacgcccaatccaat 438 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 989 gcaaccacatggaggctagcgaggaggcgaagaccacgcccaatccaat 941 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9649 Number of Sequences: 18737 Number of extensions: 9649 Number of successful extensions: 748 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 747 Number of HSP's gapped (non-prelim): 1 length of query: 438 length of database: 41,270,998 effective HSP length: 17 effective length of query: 421 effective length of database: 40,952,469 effective search space: 17240989449 effective search space used: 17240989449 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944828|AI944828 bs05h08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs05h08 5', mRNA sequence. (358 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7896 Number of Sequences: 18737 Number of extensions: 7896 Number of successful extensions: 690 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 690 Number of HSP's gapped (non-prelim): 0 length of query: 358 length of database: 41,270,998 effective HSP length: 17 effective length of query: 341 effective length of database: 40,952,469 effective search space: 13964791929 effective search space used: 13964791929 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944829|AI944829 bs05h09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs05h09 5', mRNA sequence. (319 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8215 Number of Sequences: 18737 Number of extensions: 8215 Number of successful extensions: 729 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 729 Number of HSP's gapped (non-prelim): 0 length of query: 319 length of database: 41,270,998 effective HSP length: 16 effective length of query: 303 effective length of database: 40,971,206 effective search space: 12414275418 effective search space used: 12414275418 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944831|AI944831 bs05h11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs05h11 5', mRNA sequence. (369 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG10252-RA feature: mRNA loc=3R:complement(19511593..19511924,19... 648 0.0 >CG10252-RA feature: mRNA loc=3R:complement(19511593..19511924,19511996..19512182, 19512243..19512461, 19512523..19512657);ID=FBan0010252;gene_id=FBgn0039104;g ene_sym=CG10252;sym=CG10252;scaffold=AE003744;len=873 Length = 873 Score = 648 bits (327), Expect = 0.0 Identities = 337/339 (99%), Gaps = 1/339 (0%) Strand = Plus / Minus Query: 32 aaaaagaattgtttattcacaaaaattttagcatatatttcttccaatattgcacttggt 91 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 866 aaaaagaattgtttattcacaaaaattttagcatatatttcttccaatattgcacttggt 807 Query: 92 ctacatattgtcacatctaactatcataggcggagcgaactggtggtggcgcacaccaaa 151 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 806 ctacatattgtcacatctaactatcataggcggagcgaactggtggtggcgcacaccaaa 747 Query: 152 ggagtagcccggtccactcttgccaggacgatagtacatgaggtcgtagtagttgggtcc 211 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 746 ggagtagcccggtccactcttgccaggacgatagtacatgaggtcgtagtagttgggtcc 687 Query: 212 aggtccgacattctcgcccggaatagtggtgcgcggctgcatcgaatatatcggagcacg 271 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 686 aggtccgacattctcgcccggaatagtggtgcgcggctgcatcgagtatatcggagcacg 627 Query: 272 tgt-agtttgacattgatatcaccaccgccatatgcagccggacccggagaattcgtctt 330 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 626 tgtcagtttgacattgatatcaccaccgccatatgcagccggacccggagaattcgtctt 567 Query: 331 gttcaaaatctttgtttgtagtcccatgctatagctcgg 369 ||||||||||||||||||||||||||||||||||||||| Sbjct: 566 gttcaaaatctttgtttgtagtcccatgctatagctcgg 528 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7312 Number of Sequences: 18737 Number of extensions: 7312 Number of successful extensions: 476 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 474 Number of HSP's gapped (non-prelim): 1 length of query: 369 length of database: 41,270,998 effective HSP length: 17 effective length of query: 352 effective length of database: 40,952,469 effective search space: 14415269088 effective search space used: 14415269088 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944838|AI944838 bs06a08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs06a08 5', mRNA sequence. (505 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,389 Number of Sequences: 18737 Number of extensions: 11389 Number of successful extensions: 232 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 232 Number of HSP's gapped (non-prelim): 0 length of query: 505 length of database: 41,270,998 effective HSP length: 17 effective length of query: 488 effective length of database: 40,952,469 effective search space: 19984804872 effective search space used: 19984804872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944841|AI944841 bs06a12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs06a12 5', mRNA sequence. (383 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG5089-RA feature: mRNA loc=2R:11662473..11664140;ID=FBan0005089... 698 0.0 >CG5089-RA feature: mRNA loc=2R:11662473..11664140;ID=FBan0005089;gene_id=FBgn0034 144;gene_sym=CG5089;sym=CG5089;scaffold=AE003806;len=1668 Length = 1668 Score = 698 bits (352), Expect = 0.0 Identities = 352/352 (100%) Strand = Plus / Minus Query: 32 cgttcaacgtcaattatattaaattttactataatatcccagaactctgccaggagctca 91 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1664 cgttcaacgtcaattatattaaattttactataatatcccagaactctgccaggagctca 1605 Query: 92 gcaagtattcattttcaaatattaactctggataaaaaggcaattcacaacgctatagta 151 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1604 gcaagtattcattttcaaatattaactctggataaaaaggcaattcacaacgctatagta 1545 Query: 152 aaatgagctccatttatgagctgctggcccttaagaagttgcgccaggattcgccattag 211 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1544 aaatgagctccatttatgagctgctggcccttaagaagttgcgccaggattcgccattag 1485 Query: 212 atttgcgatgagatcccatgtaggcactgggtccggcgatggcgggcggcatatccatct 271 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1484 atttgcgatgagatcccatgtaggcactgggtccggcgatggcgggcggcatatccatct 1425 Query: 272 ggccggagtaattgaatacgggagtagagggacggctagcgggagcacggctcttgacga 331 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1424 ggccggagtaattgaatacgggagtagagggacggctagcgggagcacggctcttgacga 1365 Query: 332 ccattcggaaacggggcggttccacggatcgacgctcctccttcctcttggg 383 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1364 ccattcggaaacggggcggttccacggatcgacgctcctccttcctcttggg 1313 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7888 Number of Sequences: 18737 Number of extensions: 7888 Number of successful extensions: 598 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 597 Number of HSP's gapped (non-prelim): 1 length of query: 383 length of database: 41,270,998 effective HSP length: 17 effective length of query: 366 effective length of database: 40,952,469 effective search space: 14988603654 effective search space used: 14988603654 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944844|AI944844 bs06b03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs06b03 5', mRNA sequence. (144 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2164 Number of Sequences: 18737 Number of extensions: 2164 Number of successful extensions: 182 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 182 Number of HSP's gapped (non-prelim): 0 length of query: 144 length of database: 41,270,998 effective HSP length: 16 effective length of query: 128 effective length of database: 40,971,206 effective search space: 5244314368 effective search space used: 5244314368 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944846|AI944846 bs06b05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs06b05 5', mRNA sequence. (504 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG33293-RA feature: mRNA loc=3R:complement(1065725..1066297,1066... 985 0.0 >CG33293-RA feature: mRNA loc=3R:complement(1065725..1066297, 1066359..1066454);ID=FBan0033293;gene_id=FBgn0053293;gen e_sym=CG33293;sym=CG33293;scaffold=AE003603;len=669 Length = 669 Score = 985 bits (497), Expect = 0.0 Identities = 497/497 (100%) Strand = Plus / Plus Query: 8 gccactagacatatattttttaatattttgtaagagattccttccattatggaacgattc 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 63 gccactagacatatattttttaatattttgtaagagattccttccattatggaacgattc 122 Query: 68 gcactgacaacctgcattcgccgtgtctggatcatgtccggatggctgcgccaggaggcg 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 123 gcactgacaacctgcattcgccgtgtctggatcatgtccggatggctgcgccaggaggcg 182 Query: 128 gcaatagcagccggcatgttggtggtgcagcgacaccaggttgagctgaggaatgaggag 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 183 gcaatagcagccggcatgttggtggtgcagcgacaccaggttgagctgaggaatgaggag 242 Query: 188 gaggaggggctcaaagtcggacagcagactgcatccagtggcggtgacgtgggcgtggac 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 243 gaggaggggctcaaagtcggacagcagactgcatccagtggcggtgacgtgggcgtggac 302 Query: 248 tcgcaaggaagactccgccgcgtgcggctgctagacgactacattgtgccctttgaatgc 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 303 tcgcaaggaagactccgccgcgtgcggctgctagacgactacattgtgccctttgaatgc 362 Query: 308 ggtctttgattctcgatccccatctcctgttcaccgatatggttctgggccacagcgcag 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 363 ggtctttgattctcgatccccatctcctgttcaccgatatggttctgggccacagcgcag 422 Query: 368 ttagttcatttcgcattcgaagcagttggcattcaagtagttcgattcgtgaaaccgctt 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 423 ttagttcatttcgcattcgaagcagttggcattcaagtagttcgattcgtgaaaccgctt 482 Query: 428 ctccaaattttggtcagacggaatcttcattgtatgcgctctacgtggacggagaacgaa 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 483 ctccaaattttggtcagacggaatcttcattgtatgcgctctacgtggacggagaacgaa 542 Query: 488 aacaaatattttaatcg 504 ||||||||||||||||| Sbjct: 543 aacaaatattttaatcg 559 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,604 Number of Sequences: 18737 Number of extensions: 16604 Number of successful extensions: 438 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 437 Number of HSP's gapped (non-prelim): 1 length of query: 504 length of database: 41,270,998 effective HSP length: 17 effective length of query: 487 effective length of database: 40,952,469 effective search space: 19943852403 effective search space used: 19943852403 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944870|AI944870 bs06d09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs06d09 5', mRNA sequence. (334 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Mst87F-RA feature: mRNA loc=3R:complement(9652886..9653229,96533... 381 e-105 >Mst87F-RA feature: mRNA loc=3R:complement(9652886..9653229, 9653320..9653451);ID=FBan0017956;gene_id=FBgn0002862;gen e_sym=Mst87F;sym=CG17956;scaffold=AE003702;len=476 Length = 476 Score = 381 bits (192), Expect = e-105 Identities = 208/212 (98%), Gaps = 1/212 (0%) Strand = Plus / Minus Query: 123 gaagcttacacctcatttttattgtctcaaatacctatatttgtggttcacgaatattag 182 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 470 gaagcttacacctcatatttattgtctcaaatacctatatttgtggttcacgaatattag 411 Query: 183 atgaatacgaggatgaaatagggataggttctatcctatcgtcttggtgttctggtgaac 242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 410 atgaatacgaggatgaaatagggataggttctatcctatcgtcttggtgttctggtgaac 351 Query: 243 ccttcttggacatggccagttgcaactgtttagcagcaagggtatccacaatagcagtcg 302 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || Sbjct: 350 ccttcttggacatggccagttgcaactgtctagcagcaagggtatccacaatagcagccg 291 Query: 303 ccacaggtgtccacaggcatagcatggtccgc 334 ||||||| |||||||||||||||||||||||| Sbjct: 290 ccacagg-gtccacaggcatagcatggtccgc 260 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3953 Number of Sequences: 18737 Number of extensions: 3953 Number of successful extensions: 270 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 269 Number of HSP's gapped (non-prelim): 1 length of query: 334 length of database: 41,270,998 effective HSP length: 16 effective length of query: 318 effective length of database: 40,971,206 effective search space: 13028843508 effective search space used: 13028843508 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944892|AI944892 bs06f08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs06f08 5', mRNA sequence. (462 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,550 Number of Sequences: 18737 Number of extensions: 11550 Number of successful extensions: 374 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 374 Number of HSP's gapped (non-prelim): 0 length of query: 462 length of database: 41,270,998 effective HSP length: 17 effective length of query: 445 effective length of database: 40,952,469 effective search space: 18223848705 effective search space used: 18223848705 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944902|AI944902 bs06g09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs06g09 5', mRNA sequence. (501 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,160 Number of Sequences: 18737 Number of extensions: 10160 Number of successful extensions: 194 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 194 Number of HSP's gapped (non-prelim): 0 length of query: 501 length of database: 41,270,998 effective HSP length: 17 effective length of query: 484 effective length of database: 40,952,469 effective search space: 19820994996 effective search space used: 19820994996 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944906|AI944906 bs06h01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs06h01 5', mRNA sequence. (473 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG5762-RA feature: mRNA loc=3R:complement(20177084..20177458,201... 882 0.0 >CG5762-RA feature: mRNA loc=3R:complement(20177084..20177458, 20177517..20178068);ID=FBan0005762;gene_id=FBgn0039190;g ene_sym=CG5762;sym=CG5762;scaffold=AE003747;len=927 Length = 927 Score = 882 bits (445), Expect = 0.0 Identities = 445/445 (100%) Strand = Plus / Minus Query: 29 acacttaaatattttattagtaacaaatatcacatctagtgcagatgtgttacattttta 88 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 927 acacttaaatattttattagtaacaaatatcacatctagtgcagatgtgttacattttta 868 Query: 89 cagttacattttcggatttggacgctttaaaatctgatgccttcgacactatcaatttga 148 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 867 cagttacattttcggatttggacgctttaaaatctgatgccttcgacactatcaatttga 808 Query: 149 tcaggctacaagaatgagcgattgctagaatttctgatgcgaatacaactgtcaaatata 208 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 807 tcaggctacaagaatgagcgattgctagaatttctgatgcgaatacaactgtcaaatata 748 Query: 209 aacggtttagaataagaactgacgttttcgggtgctgtaggcgtttgacaaccggagaga 268 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 747 aacggtttagaataagaactgacgttttcgggtgctgtaggcgtttgacaaccggagaga 688 Query: 269 tacaatgggtggtggacagctatcggtggcacgagcaaatttgttgcgttggatcatcgc 328 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 687 tacaatgggtggtggacagctatcggtggcacgagcaaatttgttgcgttggatcatcgc 628 Query: 329 cgcattggtgtcccattggttgataaaggcacgggcctcgtcgtcacatggctttgccgt 388 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 627 cgcattggtgtcccattggttgataaaggcacgggcctcgtcgtcacatggctttgccgt 568 Query: 389 actcggtctttcttcctgggctcggcggcgtcgaggagcctcagtttccatcgactccag 448 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 567 actcggtctttcttcctgggctcggcggcgtcgaggagcctcagtttccatcgactccag 508 Query: 449 aaagtcccgtctacgatttcgtttg 473 ||||||||||||||||||||||||| Sbjct: 507 aaagtcccgtctacgatttcgtttg 483 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9236 Number of Sequences: 18737 Number of extensions: 9236 Number of successful extensions: 204 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 203 Number of HSP's gapped (non-prelim): 1 length of query: 473 length of database: 41,270,998 effective HSP length: 17 effective length of query: 456 effective length of database: 40,952,469 effective search space: 18674325864 effective search space used: 18674325864 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944907|AI944907 bs06h03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs06h03 5', mRNA sequence. (487 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31533-RA feature: mRNA loc=3R:complement(9980498..9983032);ID=... 920 0.0 >CG31533-RA feature: mRNA loc=3R:complement(9980498..9983032);ID=FBan0031533;gene_ id=FBgn0051533;gene_sym=CG31533;sym=CG31533;scaffold=AE0 03703;len=2535 Length = 2535 Score = 920 bits (464), Expect = 0.0 Identities = 476/480 (99%) Strand = Plus / Plus Query: 8 gacaagatcagccccacgatgaacgatctggtgcacgaagatacactcgatttggttcgt 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 298 gacaagatcagccccacgatgaacgatctggtgcacgaagatacactcgatttggttcgt 357 Query: 68 cgagttgatgtagttggaacggtgagcgttctaatccgcttgaccgtaaagtgcgaggag 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 358 cgagttgatgtagttggaacggtgagcgttctaatccgcttgaccgtaaagtgcgaggag 417 Query: 128 cacccagagcagaagccttcaaggcaaagtctttcccgaaccagcaaatcatcgatgata 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 418 cacccagagcagaagccttcaaggcaaagtctttcccgaaccagcaaatcatcgatgata 477 Query: 188 ctaccgaagaaagagaaaagcggacgagtcagttgtgctagccagggcccgaccttcaat 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 478 ctaccgaagaaagagaaaagcggacgagtcagttgtgctagccagggcccgaccttcaat 537 Query: 248 cctcaggatgtgatgtttctcatcggcgatcctgatcctttacttcgaattccctcggag 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 538 cctcaggatgtgatgtttctcatcggcgatcctgatcctttacttcgaattccctcggag 597 Query: 308 ccgtgttctgaacttctatccgaaataggagatgaccgtctgaatctggacttgcagcgc 367 ||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||| Sbjct: 598 ccgtgttctgaacttctatccgaaataggagatgaacgcctgaagctggacttgcagcgc 657 Query: 368 tacaaaagcttggaaaatcgtcgggcaatctttccagatgatgaccgctgtcccaagcaa 427 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 658 tacaaaagcttggaaaatcgtcgagcaatctttccagatgatgaccgctgtcccaagcaa 717 Query: 428 aaaccctcatttatgcaacttaaaaagctcaccgaggagtattctaatatcattgactct 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 718 aaaccctcatttatgcaacttaaaaagctcaccgaggagtattctaatatcattgactct 777 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9836 Number of Sequences: 18737 Number of extensions: 9836 Number of successful extensions: 201 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 200 Number of HSP's gapped (non-prelim): 1 length of query: 487 length of database: 41,270,998 effective HSP length: 17 effective length of query: 470 effective length of database: 40,952,469 effective search space: 19247660430 effective search space used: 19247660430 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944908|AI944908 bs06h04.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs06h04 5', mRNA sequence. (483 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,824 Number of Sequences: 18737 Number of extensions: 11824 Number of successful extensions: 335 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 335 Number of HSP's gapped (non-prelim): 0 length of query: 483 length of database: 41,270,998 effective HSP length: 17 effective length of query: 466 effective length of database: 40,952,469 effective search space: 19083850554 effective search space used: 19083850554 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944909|AI944909 bs06h05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs06h05 5', mRNA sequence. (89 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1187 Number of Sequences: 18737 Number of extensions: 1187 Number of successful extensions: 364 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 364 Number of HSP's gapped (non-prelim): 0 length of query: 89 length of database: 41,270,998 effective HSP length: 16 effective length of query: 73 effective length of database: 40,971,206 effective search space: 2990898038 effective search space used: 2990898038 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944913|AI944913 bs06h09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs06h09 5', mRNA sequence. (325 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7055 Number of Sequences: 18737 Number of extensions: 7055 Number of successful extensions: 651 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 651 Number of HSP's gapped (non-prelim): 0 length of query: 325 length of database: 41,270,998 effective HSP length: 16 effective length of query: 309 effective length of database: 40,971,206 effective search space: 12660102654 effective search space used: 12660102654 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944917|AI944917 bs07a01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs07a01 5', mRNA sequence. (380 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,114 Number of Sequences: 18737 Number of extensions: 11114 Number of successful extensions: 1206 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1206 Number of HSP's gapped (non-prelim): 0 length of query: 380 length of database: 41,270,998 effective HSP length: 17 effective length of query: 363 effective length of database: 40,952,469 effective search space: 14865746247 effective search space used: 14865746247 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944923|AI944923 bs07a07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs07a07 5', mRNA sequence. (293 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6707 Number of Sequences: 18737 Number of extensions: 6707 Number of successful extensions: 519 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 519 Number of HSP's gapped (non-prelim): 0 length of query: 293 length of database: 41,270,998 effective HSP length: 16 effective length of query: 277 effective length of database: 40,971,206 effective search space: 11349024062 effective search space used: 11349024062 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944929|AI944929 bs07b01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs07b01 5', mRNA sequence. (371 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8996 Number of Sequences: 18737 Number of extensions: 8996 Number of successful extensions: 837 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 837 Number of HSP's gapped (non-prelim): 0 length of query: 371 length of database: 41,270,998 effective HSP length: 17 effective length of query: 354 effective length of database: 40,952,469 effective search space: 14497174026 effective search space used: 14497174026 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944933|AI944933 bs07b05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs07b05 5', mRNA sequence. (458 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31709-RA feature: mRNA loc=2L:complement(9570765..9571260,9571... 874 0.0 >CG31709-RA feature: mRNA loc=2L:complement(9570765..9571260,9571322..9571676, 9571740..9571867);ID=FBan0031709;gene_id=FBgn0051709;gen e_sym=CG31709;sym=CG31709;scaffold=AE003625;len=979 Length = 979 Score = 874 bits (441), Expect = 0.0 Identities = 450/453 (99%) Strand = Plus / Plus Query: 6 agggattttcctcaacaacaagtttaaattcgttagtcaaccaaaatcgtgtaacaatgg 65 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19 agggattttcctcaacaacaagtttaaattcgttagtcaaccaaaatcgtgtaacaatgg 78 Query: 66 gtgcttgtcgccctagaaaatgtagtgcaaataaccgaactatggcaattcgtcgccgta 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79 gtgcttgtcgccctagaaaatgtagtgcaaataaccgaactatggcaattcgtcgccgta 138 Query: 126 gagctctagttaacttgctatttttgcgccgtcatttgattggacaggcacttggaatta 185 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 139 gagctctagttaacttgctatttttgcgccgtcatttgattggacaggcacttggaatta 198 Query: 186 cgaatcgggaaactccagaccttagggtaaaatcgcggcgacgcaatcgtagaaggagaa 245 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 199 cgaatcgggaaactccagaccttagggtaaaatcgcggcgacgcaatcgtagaaggagaa 258 Query: 246 tgcaattcagagtccgtacaccaagtgataatgcactgcgctcagtaaggcatcatggac 305 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 259 tgcaattcagagtccgtacaccaagtgataatgcaatgcgctcagtaaggcatcatggac 318 Query: 306 agaatccaatcagcccaggatcacggctacaacgaaacaatccactttggggacacgccg 365 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 319 agaatccaatcagcccaggatcacggctacaacgaaataatccactttggggacacgccg 378 Query: 366 acattataaccacagatacagcgttggaagctttaaatggacttactacagggaacaggg 425 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 379 acattataaccacagatagagcgttggaagctttaaatggacttactacagggaacaggg 438 Query: 426 aaccaaatgcattgtcagtaatggtgcgatata 458 ||||||||||||||||||||||||||||||||| Sbjct: 439 aaccaaatgcattgtcagtaatggtgcgatata 471 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7710 Number of Sequences: 18737 Number of extensions: 7710 Number of successful extensions: 172 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 171 Number of HSP's gapped (non-prelim): 1 length of query: 458 length of database: 41,270,998 effective HSP length: 17 effective length of query: 441 effective length of database: 40,952,469 effective search space: 18060038829 effective search space used: 18060038829 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944934|AI944934 bs07b06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs07b06 5', mRNA sequence. (365 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6465 Number of Sequences: 18737 Number of extensions: 6465 Number of successful extensions: 485 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 485 Number of HSP's gapped (non-prelim): 0 length of query: 365 length of database: 41,270,998 effective HSP length: 17 effective length of query: 348 effective length of database: 40,952,469 effective search space: 14251459212 effective search space used: 14251459212 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944948|AI944948 bs07c08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs07c08 5', mRNA sequence. (211 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 640 Number of Sequences: 18737 Number of extensions: 640 Number of successful extensions: 81 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81 Number of HSP's gapped (non-prelim): 0 length of query: 211 length of database: 41,270,998 effective HSP length: 16 effective length of query: 195 effective length of database: 40,971,206 effective search space: 7989385170 effective search space used: 7989385170 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944957|AI944957 bs07d05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs07d05 5', mRNA sequence. (400 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9336 Number of Sequences: 18737 Number of extensions: 9336 Number of successful extensions: 722 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 722 Number of HSP's gapped (non-prelim): 0 length of query: 400 length of database: 41,270,998 effective HSP length: 17 effective length of query: 383 effective length of database: 40,952,469 effective search space: 15684795627 effective search space used: 15684795627 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944960|AI944960 bs07d08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs07d08 5', mRNA sequence. (384 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG33293-RA feature: mRNA loc=3R:complement(1065725..1066297,1066... 706 0.0 >CG33293-RA feature: mRNA loc=3R:complement(1065725..1066297, 1066359..1066454);ID=FBan0033293;gene_id=FBgn0053293;gen e_sym=CG33293;sym=CG33293;scaffold=AE003603;len=669 Length = 669 Score = 706 bits (356), Expect = 0.0 Identities = 356/356 (100%) Strand = Plus / Minus Query: 29 gttcaccattgattgtttaattttaatgtcgctaaaacgtcgagattaacgcgaactact 88 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 668 gttcaccattgattgtttaattttaatgtcgctaaaacgtcgagattaacgcgaactact 609 Query: 89 cgtgaaaatataaaattttacaataacatgctttttggggctatatcttcgattaaaata 148 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 608 cgtgaaaatataaaattttacaataacatgctttttggggctatatcttcgattaaaata 549 Query: 149 tttgttttcgttctccgtccacgtagagcgcatacaatgaagattccgtctgaccaaaat 208 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 548 tttgttttcgttctccgtccacgtagagcgcatacaatgaagattccgtctgaccaaaat 489 Query: 209 ttggagaagcggtttcacgaatcgaactacttgaatgccaactgcttcgaatgcgaaatg 268 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 488 ttggagaagcggtttcacgaatcgaactacttgaatgccaactgcttcgaatgcgaaatg 429 Query: 269 aactaactgcgctgtggcccagaaccatatcggtgaacaggagatggggatcgagaatca 328 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 428 aactaactgcgctgtggcccagaaccatatcggtgaacaggagatggggatcgagaatca 369 Query: 329 aagaccgcattcaaagggcacaatgtagtcgtctagcagccgcacgcggcggagtc 384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 368 aagaccgcattcaaagggcacaatgtagtcgtctagcagccgcacgcggcggagtc 313 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8040 Number of Sequences: 18737 Number of extensions: 8040 Number of successful extensions: 629 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 628 Number of HSP's gapped (non-prelim): 1 length of query: 384 length of database: 41,270,998 effective HSP length: 17 effective length of query: 367 effective length of database: 40,952,469 effective search space: 15029556123 effective search space used: 15029556123 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944970|AI944970 bs07e08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs07e08 5', mRNA sequence. (335 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8662 Number of Sequences: 18737 Number of extensions: 8662 Number of successful extensions: 718 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 718 Number of HSP's gapped (non-prelim): 0 length of query: 335 length of database: 41,270,998 effective HSP length: 16 effective length of query: 319 effective length of database: 40,971,206 effective search space: 13069814714 effective search space used: 13069814714 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944979|AI944979 bs07f06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs07f06 5', mRNA sequence. (382 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG7235-RC feature: mRNA loc=2L:join(5655064..5655196,5661033..56... 690 0.0 CG7235-RB feature: mRNA loc=2L:join(5655064..5655196,5661158..56... 690 0.0 CG7235-RA feature: mRNA loc=2L:join(5655064..5655196,5660964..56... 690 0.0 >CG7235-RC feature: mRNA loc=2L:join(5655064..5655196,5661033..5661096, 5661158..5663057);ID=FBan0007235;gene_id=FBgn0031728;gene _sym=CG7235;sym=CG7235;scaffold=AE003610;len=2097 Length = 2097 Score = 690 bits (348), Expect = 0.0 Identities = 350/351 (99%) Strand = Plus / Minus Query: 32 gtcactagaatattccttatttcacatatatgcttaacatcaattgtattgtaaaagggt 91 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2089 gtcactagaatattccttatttcacatatatgcttaacatcaattgtattgtaaaagggt 2030 Query: 92 aaagcaaaccgctcggctagaatgtggcaaaccatgagcgtttccttgttttgaatttag 151 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2029 aaagcaaaccgctcggctagaatgtggcaaaccatgagcgtttccttgttttgaatttag 1970 Query: 152 gtaaggatattacgtggtaaggaattcattaaggattacatgcccattccgcccatgccc 211 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1969 gtaaggatattacgtggtaaggaattcattaaggattacatgcccattccgcccatgccc 1910 Query: 212 ataccgccnagagctcctaatccggctgccgctccagcagcggcggcctcctccaacggc 271 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1909 ataccgccgagagctcctaatccggctgccgctccagcagcggcggcctcctccaacggc 1850 Query: 272 aactccgtaactacagcctcggcagtggtcagaagagaggcgactccggctgcgtccgag 331 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1849 aactccgtaactacagcctcggcagtggtcagaagagaggcgactccggctgcgtccgag 1790 Query: 332 atggcggtgcgcaccaccttggtgggatcgataataccgcgttcgatcatg 382 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1789 atggcggtgcgcaccaccttggtgggatcgataataccgcgttcgatcatg 1739 >CG7235-RB feature: mRNA loc=2L:join(5655064..5655196, 5661158..5663057);ID=FBan0007235;gene_id=FBgn0031728;gene _sym=CG7235;sym=CG7235;scaffold=AE003610;len=2033 Length = 2033 Score = 690 bits (348), Expect = 0.0 Identities = 350/351 (99%) Strand = Plus / Minus Query: 32 gtcactagaatattccttatttcacatatatgcttaacatcaattgtattgtaaaagggt 91 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2025 gtcactagaatattccttatttcacatatatgcttaacatcaattgtattgtaaaagggt 1966 Query: 92 aaagcaaaccgctcggctagaatgtggcaaaccatgagcgtttccttgttttgaatttag 151 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1965 aaagcaaaccgctcggctagaatgtggcaaaccatgagcgtttccttgttttgaatttag 1906 Query: 152 gtaaggatattacgtggtaaggaattcattaaggattacatgcccattccgcccatgccc 211 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1905 gtaaggatattacgtggtaaggaattcattaaggattacatgcccattccgcccatgccc 1846 Query: 212 ataccgccnagagctcctaatccggctgccgctccagcagcggcggcctcctccaacggc 271 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1845 ataccgccgagagctcctaatccggctgccgctccagcagcggcggcctcctccaacggc 1786 Query: 272 aactccgtaactacagcctcggcagtggtcagaagagaggcgactccggctgcgtccgag 331 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1785 aactccgtaactacagcctcggcagtggtcagaagagaggcgactccggctgcgtccgag 1726 Query: 332 atggcggtgcgcaccaccttggtgggatcgataataccgcgttcgatcatg 382 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1725 atggcggtgcgcaccaccttggtgggatcgataataccgcgttcgatcatg 1675 >CG7235-RA feature: mRNA loc=2L:join(5655064..5655196,5660964..5661096, 5661158..5663057);ID=FBan0007235;gene_id=FBgn0031728;gene _sym=CG7235;sym=CG7235;scaffold=AE003610;len=2166 Length = 2166 Score = 690 bits (348), Expect = 0.0 Identities = 350/351 (99%) Strand = Plus / Minus Query: 32 gtcactagaatattccttatttcacatatatgcttaacatcaattgtattgtaaaagggt 91 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2158 gtcactagaatattccttatttcacatatatgcttaacatcaattgtattgtaaaagggt 2099 Query: 92 aaagcaaaccgctcggctagaatgtggcaaaccatgagcgtttccttgttttgaatttag 151 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2098 aaagcaaaccgctcggctagaatgtggcaaaccatgagcgtttccttgttttgaatttag 2039 Query: 152 gtaaggatattacgtggtaaggaattcattaaggattacatgcccattccgcccatgccc 211 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2038 gtaaggatattacgtggtaaggaattcattaaggattacatgcccattccgcccatgccc 1979 Query: 212 ataccgccnagagctcctaatccggctgccgctccagcagcggcggcctcctccaacggc 271 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1978 ataccgccgagagctcctaatccggctgccgctccagcagcggcggcctcctccaacggc 1919 Query: 272 aactccgtaactacagcctcggcagtggtcagaagagaggcgactccggctgcgtccgag 331 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1918 aactccgtaactacagcctcggcagtggtcagaagagaggcgactccggctgcgtccgag 1859 Query: 332 atggcggtgcgcaccaccttggtgggatcgataataccgcgttcgatcatg 382 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1858 atggcggtgcgcaccaccttggtgggatcgataataccgcgttcgatcatg 1808 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9470 Number of Sequences: 18737 Number of extensions: 9470 Number of successful extensions: 1056 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1053 Number of HSP's gapped (non-prelim): 3 length of query: 382 length of database: 41,270,998 effective HSP length: 17 effective length of query: 365 effective length of database: 40,952,469 effective search space: 14947651185 effective search space used: 14947651185 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944989|AI944989 bs07g05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs07g05 5', mRNA sequence. (370 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9410 Number of Sequences: 18737 Number of extensions: 9410 Number of successful extensions: 643 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 643 Number of HSP's gapped (non-prelim): 0 length of query: 370 length of database: 41,270,998 effective HSP length: 17 effective length of query: 353 effective length of database: 40,952,469 effective search space: 14456221557 effective search space used: 14456221557 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944994|AI944994 bs07g10.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs07g10 5', mRNA sequence. (311 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value mei-S332-RA feature: mRNA loc=2R:join(17165652..17165751,1716645... 563 e-160 >mei-S332-RA feature: mRNA loc=2R:join(17165652..17165751,17166454..17167025, 17167087..17168119);ID=FBan0005303;gene_id=FBgn0002715;ge ne_sym=mei-S332;sym=CG5303;scaffold=AE003456;len=1705 Length = 1705 Score = 563 bits (284), Expect = e-160 Identities = 284/284 (100%) Strand = Plus / Minus Query: 28 gacgatttaaaaatattattcatattaaaaatggtaaaaagtggtattgaaaaccaatga 87 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1504 gacgatttaaaaatattattcatattaaaaatggtaaaaagtggtattgaaaaccaatga 1445 Query: 88 aattacagaaacaacattaaagcctattaaaaaattcgtctatctactttttggccttgg 147 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1444 aattacagaaacaacattaaagcctattaaaaaattcgtctatctactttttggccttgg 1385 Query: 148 ccttgcctttcgagccattgcgcaacttgttcttcagacttggctccaccaaactggtgg 207 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1384 ccttgcctttcgagccattgcgcaacttgttcttcagacttggctccaccaaactggtgg 1325 Query: 208 gcctgcagcttctactcggccttgcgctgttgttgcagaaagaactagacatatccgtat 267 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1324 gcctgcagcttctactcggccttgcgctgttgttgcagaaagaactagacatatccgtat 1265 Query: 268 tttctgatttcttattagccgcagttcggcttctagttcttata 311 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1264 tttctgatttcttattagccgcagttcggcttctagttcttata 1221 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9272 Number of Sequences: 18737 Number of extensions: 9272 Number of successful extensions: 765 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 764 Number of HSP's gapped (non-prelim): 1 length of query: 311 length of database: 41,270,998 effective HSP length: 16 effective length of query: 295 effective length of database: 40,971,206 effective search space: 12086505770 effective search space used: 12086505770 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944999|AI944999 bs07h03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs07h03 5', mRNA sequence. (292 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7550 Number of Sequences: 18737 Number of extensions: 7550 Number of successful extensions: 527 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 527 Number of HSP's gapped (non-prelim): 0 length of query: 292 length of database: 41,270,998 effective HSP length: 16 effective length of query: 276 effective length of database: 40,971,206 effective search space: 11308052856 effective search space used: 11308052856 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945035|AI945035 bs08c03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs08c03 5', mRNA sequence. (419 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG17301-RA feature: mRNA loc=2L:join(2645679..2645804,2645856..2... 718 0.0 >CG17301-RA feature: mRNA loc=2L:join(2645679..2645804, 2645856..2646498);ID=FBan0017301;gene_id=FBgn0031442;gen e_sym=CG17301;sym=CG17301;scaffold=AE003582;len=769 Length = 769 Score = 718 bits (362), Expect = 0.0 Identities = 381/386 (98%), Gaps = 1/386 (0%) Strand = Plus / Minus Query: 34 ttaatacagagctttatattcaattatttttgattcaaattttatgaatctttgataagc 93 |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct: 769 ttaatacagagctttatattaaattattttc-attcaaattttatgaatctttgataagc 711 Query: 94 tacaaaaaatataaaggatttcgattattattttgtgtttaatatccttcgcttgggacc 153 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 710 tacaaaaaatataaagggcttcgattattattttgtgtttaatatccttcgcttgggacc 651 Query: 154 agctaagatatcccctctaagggactccaggttgatgctattcatctttgttatgccatt 213 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 650 agctaagatatcccctctaagggactccaggttgatgctattcatctttgttatgccatt 591 Query: 214 tttgcttatcaggaacaaatctatgttgcgcaagttgataacgaatcgtttatacagctc 273 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 590 tttgcttatcaggaacaaatctatgttgcgcaagttgataacgaatcgtttatacagctc 531 Query: 274 aatcacacactttttgataacatcataggctgcctgcgtatccatgtccggtttgtagaa 333 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 530 aatcacacactttttgataacatcataggctgcctgcgtatccatgtccggtttgtagaa 471 Query: 334 ctcctcgagaatgggagtgcagaagttcatggcggctccgtggccaccgtaccgaacggg 393 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 470 ctcctcgagaatgggagtgcagaagttcatggcggctccgtggccaccgtaccgaacggg 411 Query: 394 aaccgagttacccaaataatcgatgt 419 |||||||||||||||||||||||||| Sbjct: 410 aaccgagttacccaaataatcgatgt 385 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8938 Number of Sequences: 18737 Number of extensions: 8938 Number of successful extensions: 754 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 752 Number of HSP's gapped (non-prelim): 1 length of query: 419 length of database: 41,270,998 effective HSP length: 17 effective length of query: 402 effective length of database: 40,952,469 effective search space: 16462892538 effective search space used: 16462892538 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945036|AI945036 bs08c04.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs08c04 5', mRNA sequence. (390 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9276 Number of Sequences: 18737 Number of extensions: 9276 Number of successful extensions: 716 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 716 Number of HSP's gapped (non-prelim): 0 length of query: 390 length of database: 41,270,998 effective HSP length: 17 effective length of query: 373 effective length of database: 40,952,469 effective search space: 15275270937 effective search space used: 15275270937 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945043|AI945043 bs08c11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs08c11 5', mRNA sequence. (470 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8278 Number of Sequences: 18737 Number of extensions: 8278 Number of successful extensions: 169 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 169 Number of HSP's gapped (non-prelim): 0 length of query: 470 length of database: 41,270,998 effective HSP length: 17 effective length of query: 453 effective length of database: 40,952,469 effective search space: 18551468457 effective search space used: 18551468457 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945047|AI945047 bs08d03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs08d03 5', mRNA sequence. (460 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7838 Number of Sequences: 18737 Number of extensions: 7838 Number of successful extensions: 128 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 128 Number of HSP's gapped (non-prelim): 0 length of query: 460 length of database: 41,270,998 effective HSP length: 17 effective length of query: 443 effective length of database: 40,952,469 effective search space: 18141943767 effective search space used: 18141943767 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945057|AI945057 bs08e03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs08e03 5', mRNA sequence. (396 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6708 Number of Sequences: 18737 Number of extensions: 6708 Number of successful extensions: 460 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 460 Number of HSP's gapped (non-prelim): 0 length of query: 396 length of database: 41,270,998 effective HSP length: 17 effective length of query: 379 effective length of database: 40,952,469 effective search space: 15520985751 effective search space used: 15520985751 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945058|AI945058 bs08e04.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs08e04 5', mRNA sequence. (362 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6576 Number of Sequences: 18737 Number of extensions: 6576 Number of successful extensions: 508 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 508 Number of HSP's gapped (non-prelim): 0 length of query: 362 length of database: 41,270,998 effective HSP length: 17 effective length of query: 345 effective length of database: 40,952,469 effective search space: 14128601805 effective search space used: 14128601805 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945065|AI945065 bs08e11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs08e11 5', mRNA sequence. (453 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8643 Number of Sequences: 18737 Number of extensions: 8643 Number of successful extensions: 583 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 583 Number of HSP's gapped (non-prelim): 0 length of query: 453 length of database: 41,270,998 effective HSP length: 17 effective length of query: 436 effective length of database: 40,952,469 effective search space: 17855276484 effective search space used: 17855276484 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945078|AI945078 bs08g03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs08g03 5', mRNA sequence. (332 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7535 Number of Sequences: 18737 Number of extensions: 7535 Number of successful extensions: 638 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 638 Number of HSP's gapped (non-prelim): 0 length of query: 332 length of database: 41,270,998 effective HSP length: 16 effective length of query: 316 effective length of database: 40,971,206 effective search space: 12946901096 effective search space used: 12946901096 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945079|AI945079 bs08g04.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs08g04 5', mRNA sequence. (370 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG3345-RA feature: mRNA loc=2L:join(269088..269389,269458..27060... 706 0.0 >CG3345-RA feature: mRNA loc=2L:join(269088..269389,269458..270606, 270661..271626);ID=FBan0003345;gene_id=FBgn0031240;gene_s ym=CG3345;sym=CG3345;scaffold=AE003590;len=2417 Length = 2417 Score = 706 bits (356), Expect = 0.0 Identities = 361/363 (99%) Strand = Plus / Minus Query: 8 gccgccttatagatggggtcgtctggtgcgaagctgagagcggtctgaccctccatggca 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1324 gccgccttatagatggggtcgtctggtgcgaagctgagagcggtctgaccctccatggca 1265 Query: 68 atagctgcattcaaggcgtaacaaagatcactgtctaacaatccctcaaaggtggcctga 127 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1264 atggctgcattcaaggcgtaacaaagatcactgtctaacaatccctcaaaggtggcctga 1205 Query: 128 tactcatcgcagaatgatggcttgcgttcctgaagtgtcgacttcttcttcttgcggcgc 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1204 tactcatcgcagaatgatggcttgcgttcctgaagtgtcgacttcttcttcttgcggcgc 1145 Query: 188 tttcttttgggctgacgagcagtgatggccttttgagctctttccttaatctcgtcctga 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1144 tttcttttgggctgacgagcagtgatggccttttgagctctttccttaatctcgtcctga 1085 Query: 248 atccgttgccacttttctctgtaatgagccttgtgcctgtctataaacgcctctcgctct 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1084 atccgttgccacttttctctgtaatgagccttgtgcctgtctataaacgcctctcgctct 1025 Query: 308 ttttccacctcctgcangaggtattcgatcctacgctgattagcaattcgctcatcaagt 367 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1024 ttttccacctcctgcaggaggtattcgatcctacgctgattagcaattcgctcatcaagt 965 Query: 368 cgc 370 ||| Sbjct: 964 cgc 962 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7387 Number of Sequences: 18737 Number of extensions: 7387 Number of successful extensions: 655 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 654 Number of HSP's gapped (non-prelim): 1 length of query: 370 length of database: 41,270,998 effective HSP length: 17 effective length of query: 353 effective length of database: 40,952,469 effective search space: 14456221557 effective search space used: 14456221557 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945087|AI945087 bs08g12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs08g12 5', mRNA sequence. (375 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5432 Number of Sequences: 18737 Number of extensions: 5432 Number of successful extensions: 413 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 413 Number of HSP's gapped (non-prelim): 0 length of query: 375 length of database: 41,270,998 effective HSP length: 17 effective length of query: 358 effective length of database: 40,952,469 effective search space: 14660983902 effective search space used: 14660983902 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945105|AI945105 bs09a09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs09a09 5', mRNA sequence. (469 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG9016-RB feature: mRNA loc=2L:complement(5915119..5915694,59157... 753 0.0 CG9016-RA feature: mRNA loc=2L:complement(5915119..5915694,59157... 753 0.0 >CG9016-RB feature: mRNA loc=2L:complement(5915119..5915694, 5915754..5915861);ID=FBan0009016;gene_id=FBgn0031751;gen e_sym=CG9016;sym=CG9016;scaffold=AE003611;len=684 Length = 684 Score = 753 bits (380), Expect = 0.0 Identities = 410/420 (97%) Strand = Plus / Plus Query: 8 cgtgtggcaactgccccggtggccactgcccccgaatggaggcgggtggtagtagctacg 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 202 cgtgtggcaactgccccggtggccactgcccccgaatggaggcgggtggtagtagctacg 261 Query: 68 gcgctcgaggaatgagccagccgggttgtcctggcggcaactgttgtcccggcggaaggt 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 262 gcgctcgaggaatgagccagccgggttgtcctggcggcaactgttgtcccggcggaaggt 321 Query: 128 gttcgcccggaaagtcgcgcttcaatccagactggcagtatggtggacgctagcaccaaa 187 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 322 gttcggccggaaagtcgcgcttcaatccagactggcagtatggtggacgctagcaccaaa 381 Query: 188 gagttagcgcttcccagacctgcaaatcgaacgcccacgaatggacttccactccacatc 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 382 gagttagcgcttcccagacctgcaaatcgaacgcccacgaatggacttccactccacatc 441 Query: 248 ttacccgaatagctgcacacaggaatcagattaggtgatcagcatcgagaggaagcggat 307 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 442 ttaccggaatagctgcacacaggaatcagattaggtgatcagcatcgagaggaagcggat 501 Query: 308 ccgctggtcgactcggaaactcgcacccatatccacacacttaccatctacacttgccat 367 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 502 ccgctggtcgactcggaaacttgcacccatatccacacacttaccatctacacttgccat 561 Query: 368 ctacacttaccatctagacttaccatctacactttccacatacacttttcatctacactt 427 |||||||||||||||| ||||||||||||||||| ||| ||||||| |||||| |||| Sbjct: 562 ctacacttaccatctacacttaccatctacacttaccatctacacttaccatctagactt 621 >CG9016-RA feature: mRNA loc=2L:complement(5915119..5915694, 5915749..5915861);ID=FBan0009016;gene_id=FBgn0031751;gen e_sym=CG9016;sym=CG9016;scaffold=AE003611;len=689 Length = 689 Score = 753 bits (380), Expect = 0.0 Identities = 410/420 (97%) Strand = Plus / Plus Query: 8 cgtgtggcaactgccccggtggccactgcccccgaatggaggcgggtggtagtagctacg 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 207 cgtgtggcaactgccccggtggccactgcccccgaatggaggcgggtggtagtagctacg 266 Query: 68 gcgctcgaggaatgagccagccgggttgtcctggcggcaactgttgtcccggcggaaggt 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 267 gcgctcgaggaatgagccagccgggttgtcctggcggcaactgttgtcccggcggaaggt 326 Query: 128 gttcgcccggaaagtcgcgcttcaatccagactggcagtatggtggacgctagcaccaaa 187 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 327 gttcggccggaaagtcgcgcttcaatccagactggcagtatggtggacgctagcaccaaa 386 Query: 188 gagttagcgcttcccagacctgcaaatcgaacgcccacgaatggacttccactccacatc 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 387 gagttagcgcttcccagacctgcaaatcgaacgcccacgaatggacttccactccacatc 446 Query: 248 ttacccgaatagctgcacacaggaatcagattaggtgatcagcatcgagaggaagcggat 307 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 447 ttaccggaatagctgcacacaggaatcagattaggtgatcagcatcgagaggaagcggat 506 Query: 308 ccgctggtcgactcggaaactcgcacccatatccacacacttaccatctacacttgccat 367 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 507 ccgctggtcgactcggaaacttgcacccatatccacacacttaccatctacacttgccat 566 Query: 368 ctacacttaccatctagacttaccatctacactttccacatacacttttcatctacactt 427 |||||||||||||||| ||||||||||||||||| ||| ||||||| |||||| |||| Sbjct: 567 ctacacttaccatctacacttaccatctacacttaccatctacacttaccatctagactt 626 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8563 Number of Sequences: 18737 Number of extensions: 8563 Number of successful extensions: 207 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 187 Number of HSP's gapped (non-prelim): 6 length of query: 469 length of database: 41,270,998 effective HSP length: 17 effective length of query: 452 effective length of database: 40,952,469 effective search space: 18510515988 effective search space used: 18510515988 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945119|AI945119 bs09b12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs09b12 5', mRNA sequence. (403 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7816 Number of Sequences: 18737 Number of extensions: 7816 Number of successful extensions: 545 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 545 Number of HSP's gapped (non-prelim): 0 length of query: 403 length of database: 41,270,998 effective HSP length: 17 effective length of query: 386 effective length of database: 40,952,469 effective search space: 15807653034 effective search space used: 15807653034 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945131|AI945131 bs09c12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs09c12 5', mRNA sequence. (378 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 27,646 Number of Sequences: 18737 Number of extensions: 27646 Number of successful extensions: 2203 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2203 Number of HSP's gapped (non-prelim): 0 length of query: 378 length of database: 41,270,998 effective HSP length: 17 effective length of query: 361 effective length of database: 40,952,469 effective search space: 14783841309 effective search space used: 14783841309 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945137|AI945137 bs09d07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs09d07 5', mRNA sequence. (395 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value BEST:GH14656-RA feature: mRNA loc=2R:complement(12310249..123109... 387 e-107 >BEST:GH14656-RA feature: mRNA loc=2R:complement(12310249..12310953, 12311038..12311108);ID=FBan0012699;gene_id=FBgn0046294;g ene_sym=BEST:GH14656;sym=CG12699;scaffold=AE003804;len=7 76 Length = 776 Score = 387 bits (195), Expect = e-107 Identities = 201/203 (99%) Strand = Plus / Minus Query: 160 catgttcatccttccgcggtccttcatccccgattcgaacatcagcagtcagtagagact 219 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 556 catgttcatccttccgcggtccttcatccccgattcgaacatcagcagtcagtagagact 497 Query: 220 tcgatcgggcgatggcatatatccacacggtttggctcgaatcccggtccctctgctgca 279 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 496 tcgatcgggcgatggcatatatccacacggtttggctcgaatcccggtccctctgctgca 437 Query: 280 tcttcgacttggggcccgacgacgtcttcgtcctctgcatctgattctgcatcagattct 339 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 436 tcttcgacttggggcccgacgacgtcttcgtcctctgcatctgattctgcatcagattct 377 Query: 340 gcatcatattctgcatcagattc 362 |||||| ||||||||||| |||| Sbjct: 376 gcatcagattctgcatcatattc 354 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7279 Number of Sequences: 18737 Number of extensions: 7279 Number of successful extensions: 584 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 578 Number of HSP's gapped (non-prelim): 2 length of query: 395 length of database: 41,270,998 effective HSP length: 17 effective length of query: 378 effective length of database: 40,952,469 effective search space: 15480033282 effective search space used: 15480033282 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945144|AI945144 bs09e02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs09e02 5', mRNA sequence. (415 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,126 Number of Sequences: 18737 Number of extensions: 10126 Number of successful extensions: 1081 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1081 Number of HSP's gapped (non-prelim): 0 length of query: 415 length of database: 41,270,998 effective HSP length: 17 effective length of query: 398 effective length of database: 40,952,469 effective search space: 16299082662 effective search space used: 16299082662 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945150|AI945150 bs09e08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs09e08 5', mRNA sequence. (337 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6481 Number of Sequences: 18737 Number of extensions: 6481 Number of successful extensions: 563 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 563 Number of HSP's gapped (non-prelim): 0 length of query: 337 length of database: 41,270,998 effective HSP length: 16 effective length of query: 321 effective length of database: 40,971,206 effective search space: 13151757126 effective search space used: 13151757126 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945206|AI945206 bs10b10.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs10b10 5', mRNA sequence. (423 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG33284-RA feature: mRNA loc=3L:21041591..21041938;ID=FBan003328... 527 e-149 >CG33284-RA feature: mRNA loc=3L:21041591..21041938;ID=FBan0033284;gene_id=FBgn005 3284;gene_sym=CG33284;sym=CG33284;scaffold=AE003593;len= 348 Length = 348 Score = 527 bits (266), Expect = e-149 Identities = 269/270 (99%) Strand = Plus / Plus Query: 6 agggaaagcactaactgcaacatcaacatcaacagcaacattagcaacaagagcaacaaa 65 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79 agggaaagcactaactgcaacatcaacatcaacagcaacattagcaacaagagcaacaaa 138 Query: 66 gatgagaaatcgctggcttcctggcttcatgaagaaataagtctagattgccagttgggg 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 139 gatgagaaatcgctggcttcctggcttcatgaagaaataagtctagattgccagttgggg 198 Query: 126 aaaaacttgttcatctttggctctaacgagctaacggagcgacaagcggacaagcggaca 185 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 199 aaaaacttgttcatctttggctctaacgagctaacggagcgacaagcggacaagcggaca 258 Query: 186 agcagcggaccaaccgaactgatgggcggacattccggcggacggacggacaactgtgag 245 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 259 agcagcggaccaaccgaactgatgggcggacattccggcggacggacggacaactgtgag 318 Query: 246 cgattccacacaaaacaagccgatgggtaa 275 ||||||||||||||||||| |||||||||| Sbjct: 319 cgattccacacaaaacaagacgatgggtaa 348 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,931 Number of Sequences: 18737 Number of extensions: 12931 Number of successful extensions: 1680 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1675 Number of HSP's gapped (non-prelim): 1 length of query: 423 length of database: 41,270,998 effective HSP length: 17 effective length of query: 406 effective length of database: 40,952,469 effective search space: 16626702414 effective search space used: 16626702414 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945217|AI945217 bs10c09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs10c09 5', mRNA sequence. (337 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4301 Number of Sequences: 18737 Number of extensions: 4301 Number of successful extensions: 259 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 259 Number of HSP's gapped (non-prelim): 0 length of query: 337 length of database: 41,270,998 effective HSP length: 16 effective length of query: 321 effective length of database: 40,971,206 effective search space: 13151757126 effective search space used: 13151757126 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945242|AI945242 bs10e12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs10e12 5', mRNA sequence. (373 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9353 Number of Sequences: 18737 Number of extensions: 9353 Number of successful extensions: 686 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 686 Number of HSP's gapped (non-prelim): 0 length of query: 373 length of database: 41,270,998 effective HSP length: 17 effective length of query: 356 effective length of database: 40,952,469 effective search space: 14579078964 effective search space used: 14579078964 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945259|AI945259 bs10g05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs10g05 5', mRNA sequence. (331 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Tpr2-RB feature: mRNA loc=2L:join(16474850..16475235,16483580..1... 573 e-163 Tpr2-RA feature: mRNA loc=2L:join(16469626..16470135,16483580..1... 573 e-163 >Tpr2-RB feature: mRNA loc=2L:join(16474850..16475235,16483580..16484032, 16484092..16484936, 16485013..16485436);ID=FBan0004599;gene_id=FBgn0032586;ge ne_sym=Tpr2;sym=CG4599;scaffold=AE003651;len=2108 Length = 2108 Score = 573 bits (289), Expect = e-163 Identities = 301/305 (98%) Strand = Plus / Minus Query: 27 agttgcattattttgatttagaatattttttcaaataacttggcatatattcattcgtta 86 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1991 agttgcattattttgatttagaatattttttcaaataacttggcatatattcattcgtta 1932 Query: 87 acataatcaaaatgtggtattttcttgctttttggaaaagaaatatgtaaaagagttcaa 146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1931 acataatcaaaatgtggtattttcttgctttttggaaaagaaatatgtaaaagagttcaa 1872 Query: 147 aatatgtgcgctgctgtatgttggtttcggatgaggcagaaagtatgggattgagatggt 206 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1871 aatttgtgcgctgctgtatgttggtttcggatgaggcagaaagtatgggattgagatggt 1812 Query: 207 cttcttctctgtggtggtaaacaacactcgttgggatcctagaactcaaagttgaacgaa 266 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 1811 cttcttctctgtggtggtgaacaacactcgttgggatcctagaactcaaagttgaacgat 1752 Query: 267 gaattattccggccaccgccgttgaattggaagaatgagcggaacatttgattcggatcg 326 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1751 gaattattccggccaccgccgttgaattggaagaatgtgcggaacatttgattcggatcg 1692 Query: 327 aagtc 331 ||||| Sbjct: 1691 aagtc 1687 >Tpr2-RA feature: mRNA loc=2L:join(16469626..16470135,16483580..16484032, 16484092..16484936, 16485013..16485436);ID=FBan0004599;gene_id=FBgn0032586;ge ne_sym=Tpr2;sym=CG4599;scaffold=AE003651;len=2232 Length = 2232 Score = 573 bits (289), Expect = e-163 Identities = 301/305 (98%) Strand = Plus / Minus Query: 27 agttgcattattttgatttagaatattttttcaaataacttggcatatattcattcgtta 86 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2115 agttgcattattttgatttagaatattttttcaaataacttggcatatattcattcgtta 2056 Query: 87 acataatcaaaatgtggtattttcttgctttttggaaaagaaatatgtaaaagagttcaa 146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2055 acataatcaaaatgtggtattttcttgctttttggaaaagaaatatgtaaaagagttcaa 1996 Query: 147 aatatgtgcgctgctgtatgttggtttcggatgaggcagaaagtatgggattgagatggt 206 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1995 aatttgtgcgctgctgtatgttggtttcggatgaggcagaaagtatgggattgagatggt 1936 Query: 207 cttcttctctgtggtggtaaacaacactcgttgggatcctagaactcaaagttgaacgaa 266 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 1935 cttcttctctgtggtggtgaacaacactcgttgggatcctagaactcaaagttgaacgat 1876 Query: 267 gaattattccggccaccgccgttgaattggaagaatgagcggaacatttgattcggatcg 326 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1875 gaattattccggccaccgccgttgaattggaagaatgtgcggaacatttgattcggatcg 1816 Query: 327 aagtc 331 ||||| Sbjct: 1815 aagtc 1811 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7732 Number of Sequences: 18737 Number of extensions: 7732 Number of successful extensions: 546 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 544 Number of HSP's gapped (non-prelim): 2 length of query: 331 length of database: 41,270,998 effective HSP length: 16 effective length of query: 315 effective length of database: 40,971,206 effective search space: 12905929890 effective search space used: 12905929890 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945262|AI945262 bs10g08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs10g08 5', mRNA sequence. (310 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4705 Number of Sequences: 18737 Number of extensions: 4705 Number of successful extensions: 283 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 283 Number of HSP's gapped (non-prelim): 0 length of query: 310 length of database: 41,270,998 effective HSP length: 16 effective length of query: 294 effective length of database: 40,971,206 effective search space: 12045534564 effective search space used: 12045534564 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945273|AI945273 bs10h07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs10h07 5', mRNA sequence. (377 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7395 Number of Sequences: 18737 Number of extensions: 7395 Number of successful extensions: 571 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 571 Number of HSP's gapped (non-prelim): 0 length of query: 377 length of database: 41,270,998 effective HSP length: 17 effective length of query: 360 effective length of database: 40,952,469 effective search space: 14742888840 effective search space used: 14742888840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945277|AI945277 bs10h12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs10h12 5', mRNA sequence. (347 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9703 Number of Sequences: 18737 Number of extensions: 9703 Number of successful extensions: 949 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 949 Number of HSP's gapped (non-prelim): 0 length of query: 347 length of database: 41,270,998 effective HSP length: 16 effective length of query: 331 effective length of database: 40,971,206 effective search space: 13561469186 effective search space used: 13561469186 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945282|AI945282 bs11a05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs11a05 5', mRNA sequence. (301 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5080 Number of Sequences: 18737 Number of extensions: 5080 Number of successful extensions: 412 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 412 Number of HSP's gapped (non-prelim): 0 length of query: 301 length of database: 41,270,998 effective HSP length: 16 effective length of query: 285 effective length of database: 40,971,206 effective search space: 11676793710 effective search space used: 11676793710 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945283|AI945283 bs11a06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs11a06 5', mRNA sequence. (111 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 0 Number of Sequences: 18737 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 111 length of database: 41,270,998 effective HSP length: 16 effective length of query: 95 effective length of database: 40,971,206 effective search space: 3892264570 effective search space used: 3892264570 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945313|AI945313 bs11d03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs11d03 5', mRNA sequence. (603 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,889 Number of Sequences: 18737 Number of extensions: 10889 Number of successful extensions: 233 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 233 Number of HSP's gapped (non-prelim): 0 length of query: 603 length of database: 41,270,998 effective HSP length: 17 effective length of query: 586 effective length of database: 40,952,469 effective search space: 23998146834 effective search space used: 23998146834 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945328|AI945328 bs11e07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs11e07 5', mRNA sequence. (495 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7783 Number of Sequences: 18737 Number of extensions: 7783 Number of successful extensions: 139 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 139 Number of HSP's gapped (non-prelim): 0 length of query: 495 length of database: 41,270,998 effective HSP length: 17 effective length of query: 478 effective length of database: 40,952,469 effective search space: 19575280182 effective search space used: 19575280182 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945336|AI945336 bs11f04.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs11f04 5', mRNA sequence. (531 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG11722-RA feature: mRNA loc=3R:complement(5870338..5870494,5870... 948 0.0 >CG11722-RA feature: mRNA loc=3R:complement(5870338..5870494,5870553..5870799, 5870866..5870957, 5871011..5871263);ID=FBan0011722;gene_id=FBgn0037777;gen e_sym=CG11722;sym=CG11722;scaffold=AE003685;len=749 Length = 749 Score = 948 bits (478), Expect = 0.0 Identities = 478/478 (100%) Strand = Plus / Minus Query: 54 gtttaaaacaaagaacaagaatgatttatttacggattaccctccgagctcgatttaacc 113 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 749 gtttaaaacaaagaacaagaatgatttatttacggattaccctccgagctcgatttaacc 690 Query: 114 cgcagaaggggctgcgtggcttgagttagcatcgtgtctttgtacttctggtcgggtatg 173 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 689 cgcagaaggggctgcgtggcttgagttagcatcgtgtctttgtacttctggtcgggtatg 630 Query: 174 tacatattaaaagttttaaagtagtgcagtatgttttcaactagaggctccttaagcttg 233 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 629 tacatattaaaagttttaaagtagtgcagtatgttttcaactagaggctccttaagcttg 570 Query: 234 tactcattggctatcttcttggctggccaggattcaggatccaactggtggtcattgatg 293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 569 tactcattggctatcttcttggctggccaggattcaggatccaactggtggtcattgatg 510 Query: 294 aacttaagcgcctggcgcagtgtgcaatgaccggggctaatgcggttgggctccagatat 353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 509 aacttaagcgcctggcgcagtgtgcaatgaccggggctaatgcggttgggctccagatat 450 Query: 354 ccgtactcaaaatcatccggcgttttgcgttccaggggcagtggtcgctgttccacattg 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 449 ccgtactcaaaatcatccggcgttttgcgttccaggggcagtggtcgctgttccacattg 390 Query: 414 tccgccgccgcctcagctgcctggcgctcctgcactcgcttgataaatcgatcctgcgag 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 389 tccgccgccgcctcagctgcctggcgctcctgcactcgcttgataaatcgatcctgcgag 330 Query: 474 gttacataaacgtctttcaatcgtccgtccaagctggagtctttcatattgagcttgt 531 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 329 gttacataaacgtctttcaatcgtccgtccaagctggagtctttcatattgagcttgt 272 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,456 Number of Sequences: 18737 Number of extensions: 13456 Number of successful extensions: 319 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 318 Number of HSP's gapped (non-prelim): 1 length of query: 531 length of database: 41,270,998 effective HSP length: 17 effective length of query: 514 effective length of database: 40,952,469 effective search space: 21049569066 effective search space used: 21049569066 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945342|AI945342 bs11f11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs11f11 5', mRNA sequence. (469 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8692 Number of Sequences: 18737 Number of extensions: 8692 Number of successful extensions: 236 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 236 Number of HSP's gapped (non-prelim): 0 length of query: 469 length of database: 41,270,998 effective HSP length: 17 effective length of query: 452 effective length of database: 40,952,469 effective search space: 18510515988 effective search space used: 18510515988 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945365|AI945365 bs11h12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs11h12 5', mRNA sequence. (522 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG12902-RB feature: mRNA loc=2R:complement(5415353..5415921,5416... 622 e-178 CG12902-RA feature: mRNA loc=2R:complement(5415353..5416072,5416... 622 e-178 >CG12902-RB feature: mRNA loc=2R:complement(5415353..5415921, 5416134..5416464);ID=FBan0012902;gene_id=FBgn0033512;gen e_sym=CG12902;sym=CG12902;scaffold=AE003830;len=900 Length = 900 Score = 622 bits (314), Expect = e-178 Identities = 323/326 (99%) Strand = Plus / Minus Query: 197 cgaatggcattttgtcttccctggctaacgctgcaagcggttgggtaacttcatgggtga 256 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 720 cgaatggcattttgtcttccctggctaacgctgcaaacggttgggtaacttcatgggtga 661 Query: 257 tgatgagtccaggttcaattagctagtgccaggcttggatgattgatattaccgacgggc 316 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 660 tgatgagtccaggttcaattagctagtgccaggcttggatgattgatattaccgccgggc 601 Query: 317 atggcagatcggtcagtcctacttcttggccttgccttcgtccttctttttgccgcccga 376 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 600 atggcagatcggtcagtcctacttcttggccttgccttcgtccttctttttgccgcccga 541 Query: 377 cttgtcgtccttgttgcgcacaaagagcacgcccagtcccaccccgatgacgaagaacag 436 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 540 cttgtcgtccttgttgcgcacgaagagcacgcccagtcccaccccgatgacgaagaacag 481 Query: 437 gacgcggttgcacggcgtacagttgagcctggcaaggagcgacggcatcggccggcacac 496 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 480 gacgcggttgcacggcgtacagttgagcctggcaaggagcgacggcatcggccggcacac 421 Query: 497 cctgcggacctcggtacgcttacaac 522 |||||||||||||||||||||||||| Sbjct: 420 cctgcggacctcggtacgcttacaac 395 >CG12902-RA feature: mRNA loc=2R:complement(5415353..5416072, 5416134..5416464);ID=FBan0012902;gene_id=FBgn0033512;gen e_sym=CG12902;sym=CG12902;scaffold=AE003830;len=1051 Length = 1051 Score = 622 bits (314), Expect = e-178 Identities = 323/326 (99%) Strand = Plus / Minus Query: 197 cgaatggcattttgtcttccctggctaacgctgcaagcggttgggtaacttcatgggtga 256 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 871 cgaatggcattttgtcttccctggctaacgctgcaaacggttgggtaacttcatgggtga 812 Query: 257 tgatgagtccaggttcaattagctagtgccaggcttggatgattgatattaccgacgggc 316 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 811 tgatgagtccaggttcaattagctagtgccaggcttggatgattgatattaccgccgggc 752 Query: 317 atggcagatcggtcagtcctacttcttggccttgccttcgtccttctttttgccgcccga 376 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 751 atggcagatcggtcagtcctacttcttggccttgccttcgtccttctttttgccgcccga 692 Query: 377 cttgtcgtccttgttgcgcacaaagagcacgcccagtcccaccccgatgacgaagaacag 436 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 691 cttgtcgtccttgttgcgcacgaagagcacgcccagtcccaccccgatgacgaagaacag 632 Query: 437 gacgcggttgcacggcgtacagttgagcctggcaaggagcgacggcatcggccggcacac 496 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 631 gacgcggttgcacggcgtacagttgagcctggcaaggagcgacggcatcggccggcacac 572 Query: 497 cctgcggacctcggtacgcttacaac 522 |||||||||||||||||||||||||| Sbjct: 571 cctgcggacctcggtacgcttacaac 546 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,316 Number of Sequences: 18737 Number of extensions: 10316 Number of successful extensions: 270 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 266 Number of HSP's gapped (non-prelim): 4 length of query: 522 length of database: 41,270,998 effective HSP length: 17 effective length of query: 505 effective length of database: 40,952,469 effective search space: 20680996845 effective search space used: 20680996845 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945366|AI945366 bs12a12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs12a12 5', mRNA sequence. (699 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 18,037 Number of Sequences: 18737 Number of extensions: 18037 Number of successful extensions: 535 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 535 Number of HSP's gapped (non-prelim): 0 length of query: 699 length of database: 41,270,998 effective HSP length: 17 effective length of query: 682 effective length of database: 40,952,469 effective search space: 27929583858 effective search space used: 27929583858 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945374|AI945374 bs12b09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs12b09 5', mRNA sequence. (693 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 25,818 Number of Sequences: 18737 Number of extensions: 25818 Number of successful extensions: 1097 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1097 Number of HSP's gapped (non-prelim): 0 length of query: 693 length of database: 41,270,998 effective HSP length: 17 effective length of query: 676 effective length of database: 40,952,469 effective search space: 27683869044 effective search space used: 27683869044 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945381|AI945381 bs12c04.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs12c04 5', mRNA sequence. (381 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6261 Number of Sequences: 18737 Number of extensions: 6261 Number of successful extensions: 409 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 409 Number of HSP's gapped (non-prelim): 0 length of query: 381 length of database: 41,270,998 effective HSP length: 17 effective length of query: 364 effective length of database: 40,952,469 effective search space: 14906698716 effective search space used: 14906698716 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945383|AI945383 bs12c06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs12c06 5', mRNA sequence. (606 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,721 Number of Sequences: 18737 Number of extensions: 11721 Number of successful extensions: 242 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 242 Number of HSP's gapped (non-prelim): 0 length of query: 606 length of database: 41,270,998 effective HSP length: 17 effective length of query: 589 effective length of database: 40,952,469 effective search space: 24121004241 effective search space used: 24121004241 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945391|AI945391 bs12d03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs12d03 5', mRNA sequence. (381 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG9281-RC feature: mRNA loc=X:complement(15436820..15438078,1543... 620 e-177 CG9281-RB feature: mRNA loc=X:complement(15436820..15438078,1543... 620 e-177 >CG9281-RC feature: mRNA loc=X:complement(15436820..15438078,15438143..15438679, 15438747..15439252, 15439328..15440058);ID=FBan0009281;gene_id=FBgn0030672;ge ne_sym=CG9281;sym=CG9281;scaffold=AE003500;len=3033 Length = 3033 Score = 620 bits (313), Expect = e-177 Identities = 342/356 (96%) Strand = Plus / Plus Query: 8 aacgcatccctcaaccgaaaggacattcagaccgctatcccttctcttcaataggcggcg 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1999 aacgcatccctcaaccgaaaggacattcagaccgctatcccttctcttcaataggcggcg 2058 Query: 68 ggcgacatccggctattgggctgcccgttcgctgcaatccattctgtgcgaaattagttt 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2059 ggcgacatccggctattgggctgcccgttcgctgcaatccattctgtgcgaaattagttt 2118 Query: 128 tgcgtcnactctacgctatagtgaagtcacaattcgatcggccaaccagtaaaataatca 187 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2119 tgcgtttactctacgctatagtgaagtcacaattcgatcggccaaccagtaaaataatca 2178 Query: 188 acaataaaactagaacgaaccgaacacccaatccaaacctatccaatcacaaccatgcgt 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2179 acaataaaactagaacgaaccgaacacccaatccaaacctatccaatcacaaccatgcgt 2238 Query: 248 aacacaaccgttgacaactcaacaggaacacacaaattttagctgaannnnnnnnnnnna 307 ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 2239 aacacaaccgttgacaactcaacaggaacacacaaattttagctgaattttttcttttta 2298 Query: 308 cgtgtcgaattaaagttataaaattataaatatatacaattacgaagtggacaggc 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2299 cgtgtcgaattaaagttataaaattataaatatatacaattacgaagtggacaggc 2354 >CG9281-RB feature: mRNA loc=X:complement(15436820..15438078,15438143..15438679, 15438747..15439252,15439328..15439996, 15441320..15441612);ID=FBan0009281;gene_id=FBgn0030672;ge ne_sym=CG9281;sym=CG9281;scaffold=AE003500;len=3264 Length = 3264 Score = 620 bits (313), Expect = e-177 Identities = 342/356 (96%) Strand = Plus / Plus Query: 8 aacgcatccctcaaccgaaaggacattcagaccgctatcccttctcttcaataggcggcg 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2230 aacgcatccctcaaccgaaaggacattcagaccgctatcccttctcttcaataggcggcg 2289 Query: 68 ggcgacatccggctattgggctgcccgttcgctgcaatccattctgtgcgaaattagttt 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2290 ggcgacatccggctattgggctgcccgttcgctgcaatccattctgtgcgaaattagttt 2349 Query: 128 tgcgtcnactctacgctatagtgaagtcacaattcgatcggccaaccagtaaaataatca 187 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2350 tgcgtttactctacgctatagtgaagtcacaattcgatcggccaaccagtaaaataatca 2409 Query: 188 acaataaaactagaacgaaccgaacacccaatccaaacctatccaatcacaaccatgcgt 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2410 acaataaaactagaacgaaccgaacacccaatccaaacctatccaatcacaaccatgcgt 2469 Query: 248 aacacaaccgttgacaactcaacaggaacacacaaattttagctgaannnnnnnnnnnna 307 ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 2470 aacacaaccgttgacaactcaacaggaacacacaaattttagctgaattttttcttttta 2529 Query: 308 cgtgtcgaattaaagttataaaattataaatatatacaattacgaagtggacaggc 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2530 cgtgtcgaattaaagttataaaattataaatatatacaattacgaagtggacaggc 2585 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7604 Number of Sequences: 18737 Number of extensions: 7604 Number of successful extensions: 712 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 708 Number of HSP's gapped (non-prelim): 4 length of query: 381 length of database: 41,270,998 effective HSP length: 17 effective length of query: 364 effective length of database: 40,952,469 effective search space: 14906698716 effective search space used: 14906698716 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945410|AI945410 bs12e11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs12e11 5', mRNA sequence. (588 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG13243-RA feature: mRNA loc=2L:join(15830757..15830784,15830837... 932 0.0 >CG13243-RA feature: mRNA loc=2L:join(15830757..15830784, 15830837..15832148);ID=FBan0013243;gene_id=FBgn0028903;ge ne_sym=CG13243;sym=CG13243;scaffold=AE003649;len=1340 Length = 1340 Score = 932 bits (470), Expect = 0.0 Identities = 473/474 (99%) Strand = Plus / Minus Query: 115 taaataggcccttcccgaatgtatttataggattatctggccaaagatcacttgaaattt 174 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1334 taaataggcccatcccgaatgtatttataggattatctggccaaagatcacttgaaattt 1275 Query: 175 tgaaaacactcattacctaattaagaattaagctatccctttgacatattctggaaaaac 234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1274 tgaaaacactcattacctaattaagaattaagctatccctttgacatattctggaaaaac 1215 Query: 235 ataatggagaactctaggacattgctgggcttgtaccgcaacagattgagcacataatcc 294 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1214 ataatggagaactctaggacattgctgggcttgtaccgcaacagattgagcacataatcc 1155 Query: 295 tgcataaaatcggccagctgtgaattgctgctcagatagctggtggcgttctcgtaattg 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1154 tgcataaaatcggccagctgtgaattgctgctcagatagctggtggcgttctcgtaattg 1095 Query: 355 agggctttgagctcccggaacttgcgagaaagctgttcgttttggcgccacattagttcc 414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1094 agggctttgagctcccggaacttgcgagaaagctgttcgttttggcgccacattagttcc 1035 Query: 415 aatttgggtaggataggttcctttctcttcggtggcatgcaggcggcatgcaaaaggtag 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1034 aatttgggtaggataggttcctttctcttcggtggcatgcaggcggcatgcaaaaggtag 975 Query: 475 ttatagccacgccaataatgcagaacaatccggccctcaggagtcatgaaggtctcggcc 534 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 974 ttatagccacgccaataatgcagaacaatccggccctcaggagtcatgaaggtctcggcc 915 Query: 535 acatcctggagctcatcgttgaaacattgctgggtgaagatgtgcacgacattc 588 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 914 acatcctggagctcatcgttgaaacattgctgggtgaagatgtgcacgacattc 861 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,579 Number of Sequences: 18737 Number of extensions: 13579 Number of successful extensions: 347 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 346 Number of HSP's gapped (non-prelim): 1 length of query: 588 length of database: 41,270,998 effective HSP length: 17 effective length of query: 571 effective length of database: 40,952,469 effective search space: 23383859799 effective search space used: 23383859799 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945418|AI945418 bs12f07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs12f07 5', mRNA sequence. (650 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,133 Number of Sequences: 18737 Number of extensions: 13133 Number of successful extensions: 254 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 254 Number of HSP's gapped (non-prelim): 0 length of query: 650 length of database: 41,270,998 effective HSP length: 17 effective length of query: 633 effective length of database: 40,952,469 effective search space: 25922912877 effective search space used: 25922912877 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945450|AI945450 bs13a06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs13a06 5', mRNA sequence. (559 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value chb-RC feature: mRNA loc=3L:join(21095137..21095218,21095373..21... 1090 0.0 chb-RB feature: mRNA loc=3L:join(21090129..21090321,21095373..21... 1090 0.0 chb-RA feature: mRNA loc=3L:join(21093076..21093804,21095373..21... 1090 0.0 >chb-RC feature: mRNA loc=3L:join(21095137..21095218, 21095373..21100554);ID=FBan0032435;gene_id=FBgn0021760;ge ne_sym=chb;sym=CG32435;scaffold=AE003593;len=5264 Length = 5264 Score = 1090 bits (550), Expect = 0.0 Identities = 553/554 (99%) Strand = Plus / Plus Query: 6 aggtcaagccgaagctgtcagtgctaaatcccagcaaggttaggctcctcaacgtgtaca 65 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4461 aggtcaagccgaagctgtcagtgctaaatcccagcaaggttaggctcctcaacgtgtaca 4520 Query: 66 tcgagaagcagcggaactgcatcagtgggggaggaagctctaccaagaactcctccgcgg 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4521 tcgagaagcagcggaactgcatcagtgggggaggaagctctaccaagaactcctccgcgg 4580 Query: 126 catcgtcgtcatgattgcgggagcccttaataggattcctgcatcagcaccaccacaaac 185 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4581 catcgtcgtcatgattgcgggagcccttaataggattcctgcatcagcaccaccacaaac 4640 Query: 186 aagacacagacgcggttgcttccctcggcctgagaaggaagtgaggagcggcggacatta 245 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4641 aagacacagacgcggttgcttccctcggcctgagaaggaagtgaggagcggcggacatta 4700 Query: 246 aataatatattattacattaactaattatttataactaattattaccgatcatccgttac 305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4701 aataatatattattacattaactaattatttataactaattattaccgatcatccgttac 4760 Query: 306 ttgtgtaactgctcgatgcatatattcagcagatgcaaatgcggcccgaaagaaagtcaa 365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4761 ttgtgtaactgctcgatgcatatattcagcagatgcaaatgcggcccgaaagaaagtcaa 4820 Query: 366 gggccatcgcccatctaatgtgagcagaaaaactatttatacataaacgggaactaaagc 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4821 gggccatcgcccatctaatgtgagcagaaaaactatttatacataaacgggaactaaagc 4880 Query: 426 gagtaaatccgcaaagtgtactaaaattgtagccaactccgcattcctcacttctcacat 485 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 4881 gagtaaatccgcaaagtgtactaaaattgtagccaactccgcaatcctcacttctcacat 4940 Query: 486 cagttgtacgtctttttaccagctcctaactattaacgctgattctgtttaatttgtaag 545 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4941 cagttgtacgtctttttaccagctcctaactattaacgctgattctgtttaatttgtaag 5000 Query: 546 cctatataccgctc 559 |||||||||||||| Sbjct: 5001 cctatataccgctc 5014 >chb-RB feature: mRNA loc=3L:join(21090129..21090321, 21095373..21100554);ID=FBan0032435;gene_id=FBgn0021760;ge ne_sym=chb;sym=CG32435;scaffold=AE003593;len=5375 Length = 5375 Score = 1090 bits (550), Expect = 0.0 Identities = 553/554 (99%) Strand = Plus / Plus Query: 6 aggtcaagccgaagctgtcagtgctaaatcccagcaaggttaggctcctcaacgtgtaca 65 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4572 aggtcaagccgaagctgtcagtgctaaatcccagcaaggttaggctcctcaacgtgtaca 4631 Query: 66 tcgagaagcagcggaactgcatcagtgggggaggaagctctaccaagaactcctccgcgg 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4632 tcgagaagcagcggaactgcatcagtgggggaggaagctctaccaagaactcctccgcgg 4691 Query: 126 catcgtcgtcatgattgcgggagcccttaataggattcctgcatcagcaccaccacaaac 185 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4692 catcgtcgtcatgattgcgggagcccttaataggattcctgcatcagcaccaccacaaac 4751 Query: 186 aagacacagacgcggttgcttccctcggcctgagaaggaagtgaggagcggcggacatta 245 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4752 aagacacagacgcggttgcttccctcggcctgagaaggaagtgaggagcggcggacatta 4811 Query: 246 aataatatattattacattaactaattatttataactaattattaccgatcatccgttac 305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4812 aataatatattattacattaactaattatttataactaattattaccgatcatccgttac 4871 Query: 306 ttgtgtaactgctcgatgcatatattcagcagatgcaaatgcggcccgaaagaaagtcaa 365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4872 ttgtgtaactgctcgatgcatatattcagcagatgcaaatgcggcccgaaagaaagtcaa 4931 Query: 366 gggccatcgcccatctaatgtgagcagaaaaactatttatacataaacgggaactaaagc 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4932 gggccatcgcccatctaatgtgagcagaaaaactatttatacataaacgggaactaaagc 4991 Query: 426 gagtaaatccgcaaagtgtactaaaattgtagccaactccgcattcctcacttctcacat 485 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 4992 gagtaaatccgcaaagtgtactaaaattgtagccaactccgcaatcctcacttctcacat 5051 Query: 486 cagttgtacgtctttttaccagctcctaactattaacgctgattctgtttaatttgtaag 545 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5052 cagttgtacgtctttttaccagctcctaactattaacgctgattctgtttaatttgtaag 5111 Query: 546 cctatataccgctc 559 |||||||||||||| Sbjct: 5112 cctatataccgctc 5125 >chb-RA feature: mRNA loc=3L:join(21093076..21093804, 21095373..21100554);ID=FBan0032435;gene_id=FBgn0021760;ge ne_sym=chb;sym=CG32435;scaffold=AE003593;len=5911 Length = 5911 Score = 1090 bits (550), Expect = 0.0 Identities = 553/554 (99%) Strand = Plus / Plus Query: 6 aggtcaagccgaagctgtcagtgctaaatcccagcaaggttaggctcctcaacgtgtaca 65 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5108 aggtcaagccgaagctgtcagtgctaaatcccagcaaggttaggctcctcaacgtgtaca 5167 Query: 66 tcgagaagcagcggaactgcatcagtgggggaggaagctctaccaagaactcctccgcgg 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5168 tcgagaagcagcggaactgcatcagtgggggaggaagctctaccaagaactcctccgcgg 5227 Query: 126 catcgtcgtcatgattgcgggagcccttaataggattcctgcatcagcaccaccacaaac 185 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5228 catcgtcgtcatgattgcgggagcccttaataggattcctgcatcagcaccaccacaaac 5287 Query: 186 aagacacagacgcggttgcttccctcggcctgagaaggaagtgaggagcggcggacatta 245 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5288 aagacacagacgcggttgcttccctcggcctgagaaggaagtgaggagcggcggacatta 5347 Query: 246 aataatatattattacattaactaattatttataactaattattaccgatcatccgttac 305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5348 aataatatattattacattaactaattatttataactaattattaccgatcatccgttac 5407 Query: 306 ttgtgtaactgctcgatgcatatattcagcagatgcaaatgcggcccgaaagaaagtcaa 365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5408 ttgtgtaactgctcgatgcatatattcagcagatgcaaatgcggcccgaaagaaagtcaa 5467 Query: 366 gggccatcgcccatctaatgtgagcagaaaaactatttatacataaacgggaactaaagc 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5468 gggccatcgcccatctaatgtgagcagaaaaactatttatacataaacgggaactaaagc 5527 Query: 426 gagtaaatccgcaaagtgtactaaaattgtagccaactccgcattcctcacttctcacat 485 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 5528 gagtaaatccgcaaagtgtactaaaattgtagccaactccgcaatcctcacttctcacat 5587 Query: 486 cagttgtacgtctttttaccagctcctaactattaacgctgattctgtttaatttgtaag 545 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5588 cagttgtacgtctttttaccagctcctaactattaacgctgattctgtttaatttgtaag 5647 Query: 546 cctatataccgctc 559 |||||||||||||| Sbjct: 5648 cctatataccgctc 5661 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,448 Number of Sequences: 18737 Number of extensions: 13448 Number of successful extensions: 344 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 338 Number of HSP's gapped (non-prelim): 6 length of query: 559 length of database: 41,270,998 effective HSP length: 17 effective length of query: 542 effective length of database: 40,952,469 effective search space: 22196238198 effective search space used: 22196238198 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945467|AI945467 bs13c02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs13c02 5', mRNA sequence. (464 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG30275-RD feature: mRNA loc=2R:join(17751344..17751642,17751702... 432 e-120 CG30275-RC feature: mRNA loc=2R:join(17751344..17751642,17751702... 432 e-120 CG30275-RA feature: mRNA loc=2R:join(17751344..17751642,17751702... 432 e-120 >CG30275-RD feature: mRNA loc=2R:join(17751344..17751642,17751702..17752016, 17752233..17752526,17752581..17752688, 17752748..17752875,17752929..17753822, 17753873..17754156,17754250..17754486, 17754545..17755119,17755170..17755333, 17755396..17755644, 17755700..17756301);ID=FBan0030275;gene_id=FBgn0050275;g ene_sym=CG30275;sym=CG30275;scaffold=AE003458;len=4149 Length = 4149 Score = 432 bits (218), Expect = e-120 Identities = 221/222 (99%) Strand = Plus / Minus Query: 106 gcgggtaaaagacctgggatattttttccaaatcatcaaaggtttccacaaagtggatgg 165 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 520 gcgggtaaaagacctgggatattttttccaaatcatcgaaggtttccacaaagtggatgg 461 Query: 166 gttgtggcacatacggacacctaacagtgatcagaaaccacaccctgctctccctgtaga 225 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 460 gttgtggcacatacggacacctaacagtgatcagaaaccacaccctgctctccctgtaga 401 Query: 226 gcacatcctttatgatctcaaccagaaccggggactgatcgctcttgtagacgcaaaagt 285 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 400 gcacatcctttatgatctcaaccagaaccggggactgatcgctcttgtagacgcaaaagt 341 Query: 286 tgaaaaacaacgcattcagccagctaatggacatggataggc 327 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 340 tgaaaaacaacgcattcagccagctaatggacatggataggc 299 >CG30275-RC feature: mRNA loc=2R:join(17751344..17751642,17751702..17751977, 17752233..17752526,17752581..17752688, 17752748..17752875,17752929..17753209, 17753265..17753744,17753873..17754156, 17754527..17755119,17755170..17755333, 17755396..17755644, 17755700..17756300);ID=FBan0030275;gene_id=FBgn0050275;g ene_sym=CG30275;sym=CG30275;scaffold=AE003458;len=3757 Length = 3757 Score = 432 bits (218), Expect = e-120 Identities = 221/222 (99%) Strand = Plus / Minus Query: 106 gcgggtaaaagacctgggatattttttccaaatcatcaaaggtttccacaaagtggatgg 165 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 520 gcgggtaaaagacctgggatattttttccaaatcatcgaaggtttccacaaagtggatgg 461 Query: 166 gttgtggcacatacggacacctaacagtgatcagaaaccacaccctgctctccctgtaga 225 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 460 gttgtggcacatacggacacctaacagtgatcagaaaccacaccctgctctccctgtaga 401 Query: 226 gcacatcctttatgatctcaaccagaaccggggactgatcgctcttgtagacgcaaaagt 285 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 400 gcacatcctttatgatctcaaccagaaccggggactgatcgctcttgtagacgcaaaagt 341 Query: 286 tgaaaaacaacgcattcagccagctaatggacatggataggc 327 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 340 tgaaaaacaacgcattcagccagctaatggacatggataggc 299 >CG30275-RA feature: mRNA loc=2R:join(17751344..17751642,17751702..17752016, 17752233..17752526,17752581..17752688, 17752748..17752875,17752929..17753209, 17753265..17753744,17753873..17754156, 17754527..17755119,17755170..17755333, 17755396..17755644, 17755700..17756300);ID=FBan0030275;gene_id=FBgn0050275;g ene_sym=CG30275;sym=CG30275;scaffold=AE003458;len=3796 Length = 3796 Score = 432 bits (218), Expect = e-120 Identities = 221/222 (99%) Strand = Plus / Minus Query: 106 gcgggtaaaagacctgggatattttttccaaatcatcaaaggtttccacaaagtggatgg 165 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 520 gcgggtaaaagacctgggatattttttccaaatcatcgaaggtttccacaaagtggatgg 461 Query: 166 gttgtggcacatacggacacctaacagtgatcagaaaccacaccctgctctccctgtaga 225 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 460 gttgtggcacatacggacacctaacagtgatcagaaaccacaccctgctctccctgtaga 401 Query: 226 gcacatcctttatgatctcaaccagaaccggggactgatcgctcttgtagacgcaaaagt 285 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 400 gcacatcctttatgatctcaaccagaaccggggactgatcgctcttgtagacgcaaaagt 341 Query: 286 tgaaaaacaacgcattcagccagctaatggacatggataggc 327 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 340 tgaaaaacaacgcattcagccagctaatggacatggataggc 299 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9105 Number of Sequences: 18737 Number of extensions: 9105 Number of successful extensions: 162 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 153 Number of HSP's gapped (non-prelim): 9 length of query: 464 length of database: 41,270,998 effective HSP length: 17 effective length of query: 447 effective length of database: 40,952,469 effective search space: 18305753643 effective search space used: 18305753643 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945473|AI945473 bs13c08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs13c08 5', mRNA sequence. (525 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Moca-cyp-RB feature: mRNA loc=3R:join(24155441..24155826,2415646... 585 e-166 Moca-cyp-RA feature: mRNA loc=3R:join(24155426..24155826,2415646... 585 e-166 >Moca-cyp-RB feature: mRNA loc=3R:join(24155441..24155826,24156460..24156547, 24156715..24157302,24157368..24157507, 24157567..24157714,24157771..24157897, 24157968..24158162, 24158223..24160255);ID=FBan0001866;gene_id=FBgn0039581;g ene_sym=Moca-cyp;sym=CG1866;scaffold=AE003765;len=3705 Length = 3705 Score = 585 bits (295), Expect = e-166 Identities = 305/307 (99%), Gaps = 1/307 (0%) Strand = Plus / Minus Query: 201 cgttgcccgcagagaagtcgcccgcctggaccatgaagtccttgaccaacccggtggaat 260 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 347 cgttgcccgcagagaagtcgcccgcctggaccatgaagtccttgacca-cccggtggaat 289 Query: 261 atcacacccttgtactgcagcttcttgccggtgatcaggccaaatcccttttcgcccgtg 320 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 288 atcacacccttgtactgcagcttcttgccggtgattaggccaaatcccttttcgcccgtg 229 Query: 321 cagagtgcgcggaaattttcggccgttttgggcgccacatcgttgaagagctcgaagaca 380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 228 cagagtgcgcggaaattttcggccgttttgggcgccacatcgttgaagagctcgaagaca 169 Query: 381 atgcggcccatgcccaggccgcccagggaaatgtcaaagaagcaccgcggtcgcgtggca 440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 168 atgcggcccatgcccaggccgcccagggaaatgtcaaagaagcaccgcggtcgcgtggca 109 Query: 441 cccgcgtcgcgtttgtttaccgtcattatatgcgccgatttctgccaataaatgctgttt 500 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 108 cccgcgtcgcgtttgtttaccgtcattatatgcgccgatttctgccaataaatgctgttt 49 Query: 501 aatacgt 507 ||||||| Sbjct: 48 aatacgt 42 >Moca-cyp-RA feature: mRNA loc=3R:join(24155426..24155826,24156460..24156547, 24157273..24157302,24157368..24157507, 24157567..24157714,24157771..24157897, 24157968..24158162, 24158223..24160255);ID=FBan0001866;gene_id=FBgn0039581;g ene_sym=Moca-cyp;sym=CG1866;scaffold=AE003765;len=3162 Length = 3162 Score = 585 bits (295), Expect = e-166 Identities = 305/307 (99%), Gaps = 1/307 (0%) Strand = Plus / Minus Query: 201 cgttgcccgcagagaagtcgcccgcctggaccatgaagtccttgaccaacccggtggaat 260 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 362 cgttgcccgcagagaagtcgcccgcctggaccatgaagtccttgacca-cccggtggaat 304 Query: 261 atcacacccttgtactgcagcttcttgccggtgatcaggccaaatcccttttcgcccgtg 320 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 303 atcacacccttgtactgcagcttcttgccggtgattaggccaaatcccttttcgcccgtg 244 Query: 321 cagagtgcgcggaaattttcggccgttttgggcgccacatcgttgaagagctcgaagaca 380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 243 cagagtgcgcggaaattttcggccgttttgggcgccacatcgttgaagagctcgaagaca 184 Query: 381 atgcggcccatgcccaggccgcccagggaaatgtcaaagaagcaccgcggtcgcgtggca 440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 183 atgcggcccatgcccaggccgcccagggaaatgtcaaagaagcaccgcggtcgcgtggca 124 Query: 441 cccgcgtcgcgtttgtttaccgtcattatatgcgccgatttctgccaataaatgctgttt 500 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 123 cccgcgtcgcgtttgtttaccgtcattatatgcgccgatttctgccaataaatgctgttt 64 Query: 501 aatacgt 507 ||||||| Sbjct: 63 aatacgt 57 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,209 Number of Sequences: 18737 Number of extensions: 10209 Number of successful extensions: 265 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 261 Number of HSP's gapped (non-prelim): 2 length of query: 525 length of database: 41,270,998 effective HSP length: 17 effective length of query: 508 effective length of database: 40,952,469 effective search space: 20803854252 effective search space used: 20803854252 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945490|AI945490 bs13e02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs13e02 5', mRNA sequence. (456 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9645 Number of Sequences: 18737 Number of extensions: 9645 Number of successful extensions: 837 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 837 Number of HSP's gapped (non-prelim): 0 length of query: 456 length of database: 41,270,998 effective HSP length: 17 effective length of query: 439 effective length of database: 40,952,469 effective search space: 17978133891 effective search space used: 17978133891 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945494|AI945494 bs13e06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs13e06 5', mRNA sequence. (598 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32652-RA feature: mRNA loc=X:complement(12141720..12141970,121... 640 0.0 >CG32652-RA feature: mRNA loc=X:complement(12141720..12141970,12142025..12142249, 12142304..12142408);ID=FBan0032652;gene_id=FBgn0052652;g ene_sym=CG32652;sym=CG32652;scaffold=AE003489;len=581 Length = 581 Score = 640 bits (323), Expect = 0.0 Identities = 338/342 (98%), Gaps = 2/342 (0%) Strand = Plus / Plus Query: 257 attcccatcccatcccaaattatttaatgcgcttatccaaaatgcaaactaatgatgatc 316 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 attcccatcccatcccaaattatttaatgcgcttatccaaaatgcaaactaatgatgatc 60 Query: 317 gttccgcctacactgccttaattaacagtctgaacaagctaggatagttgaaatggtgtt 376 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 61 gttccgcctacactgccttaattaa--gtctgaacaagctaggatagttgaaatggtgtt 118 Query: 377 caattcgatggtaccagtcccgttggacgagaggattgcatcggtttggatataaatgtt 436 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct: 119 caattcgatggtaccagtcccgttggacgagaggattgcatcgttttggatacaaatgtt 178 Query: 437 gcgcttacaatcaatgcaagccatagaagcctactcttcatacactatgttaataagcca 496 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 179 gcgcttacaatcaatgcaagccatagaagcctactcttcatacactatgttaataagcca 238 Query: 497 tcttatgatcagttggtttatctcaaatgcaaactactaaagatcgttccgcctacactg 556 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 239 tcttatgatcagttggtttatctcaaatgcaaactactaaagatcgttccgcctacactg 298 Query: 557 ccttaattaacagtctgaacaagcaaggatagatgaaatggt 598 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 299 ccttaattaacagtctgaacaagcaaggatagatgaaatggt 340 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,809 Number of Sequences: 18737 Number of extensions: 11809 Number of successful extensions: 288 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 283 Number of HSP's gapped (non-prelim): 2 length of query: 598 length of database: 41,270,998 effective HSP length: 17 effective length of query: 581 effective length of database: 40,952,469 effective search space: 23793384489 effective search space used: 23793384489 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945497|AI945497 bs13e09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs13e09 5', mRNA sequence. (444 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG30430-RA feature: mRNA loc=2R:join(20173002..20173106,20173163... 652 0.0 >CG30430-RA feature: mRNA loc=2R:join(20173002..20173106, 20173163..20173482);ID=FBan0030430;gene_id=FBgn0050430;g ene_sym=CG30430;sym=CG30430;scaffold=AE003466;len=425 Length = 425 Score = 652 bits (329), Expect = 0.0 Identities = 332/333 (99%) Strand = Plus / Plus Query: 8 acgacaacatcaaaatttattgttaattgtcaaagtttttggagatttgttttttaaaac 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 49 acgacaacatcaaaatttattgttaattgtcaaagtttttggagatttgttttttaaaac 108 Query: 68 tcacataaattcgtgatgtgttgcgggccctgctgcggaacttgctactacccttgctgt 127 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 109 tcacataaattcgtgatgtgttgcgggccctgctgtggaacttgctactacccttgctgt 168 Query: 128 agcccctgctttagtggccgttgttttggaccacgatgcggattctatagtggaccatgt 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 169 agcccctgctttagtggccgttgttttggaccacgatgcggattctatagtggaccatgt 228 Query: 188 ggaccttgctgcgggggcggatgctgcagcagctgcggaccgtcttgttaattttggtac 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 229 ggaccttgctgcgggggcggatgctgcagcagctgcggaccgtcttgttaattttggtac 288 Query: 248 tcggtaaccaaaactttttgaagacaattatttattaacatggcctattcgtcttgaaaa 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 289 tcggtaaccaaaactttttgaagacaattatttattaacatggcctattcgtcttgaaaa 348 Query: 308 caagatcaagtcgtaataaaggtgtttgacttt 340 ||||||||||||||||||||||||||||||||| Sbjct: 349 caagatcaagtcgtaataaaggtgtttgacttt 381 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,489 Number of Sequences: 18737 Number of extensions: 10489 Number of successful extensions: 1003 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1002 Number of HSP's gapped (non-prelim): 1 length of query: 444 length of database: 41,270,998 effective HSP length: 17 effective length of query: 427 effective length of database: 40,952,469 effective search space: 17486704263 effective search space used: 17486704263 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945498|AI945498 bs13e10.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs13e10 5', mRNA sequence. (655 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,531 Number of Sequences: 18737 Number of extensions: 14531 Number of successful extensions: 267 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 267 Number of HSP's gapped (non-prelim): 0 length of query: 655 length of database: 41,270,998 effective HSP length: 17 effective length of query: 638 effective length of database: 40,952,469 effective search space: 26127675222 effective search space used: 26127675222 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945510|AI945510 bs13f10.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs13f10 5', mRNA sequence. (573 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,717 Number of Sequences: 18737 Number of extensions: 14717 Number of successful extensions: 410 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 410 Number of HSP's gapped (non-prelim): 0 length of query: 573 length of database: 41,270,998 effective HSP length: 17 effective length of query: 556 effective length of database: 40,952,469 effective search space: 22769572764 effective search space used: 22769572764 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945512|AI945512 bs13f12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs13f12 5', mRNA sequence. (615 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,783 Number of Sequences: 18737 Number of extensions: 10783 Number of successful extensions: 187 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 187 Number of HSP's gapped (non-prelim): 0 length of query: 615 length of database: 41,270,998 effective HSP length: 17 effective length of query: 598 effective length of database: 40,952,469 effective search space: 24489576462 effective search space used: 24489576462 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945516|AI945516 bs13g04.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs13g04 5', mRNA sequence. (657 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG8430-RB feature: mRNA loc=2R:join(11202077..11202163,11202492.... 1207 0.0 CG8430-RA feature: mRNA loc=2R:join(11202401..11202609,11204055.... 1207 0.0 >CG8430-RB feature: mRNA loc=2R:join(11202077..11202163,11202492..11202609, 11204055..11204162,11204225..11204298, 11204359..11205659);ID=FBan0008430;gene_id=FBgn0034079;ge ne_sym=CG8430;sym=CG8430;scaffold=AE003808;len=1688 Length = 1688 Score = 1207 bits (609), Expect = 0.0 Identities = 630/637 (98%) Strand = Plus / Minus Query: 21 aatgttattgtcgatttatttagttactacacacaggtcaataaacgttgtaagcttaaa 80 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1682 aatgatattgtcgatttatttagttactacacacaggtcaataaacgttgtaagcttaaa 1623 Query: 81 ttatttaaccaatcttcgacggctttcaatagtgcgtaatttttgtaaagtttttacttt 140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1622 ttatttaaccaatcttcgacggctttcaatagtgcgtaatttttgtaaagtttttacttt 1563 Query: 141 aatgtggaacattcgtttccggtgtataatatgtgtatatccatctaaaagccgcgtata 200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1562 aatgtggaacattcgtttccggtgtataatatgtgtatatccatctaaaagccgcgtata 1503 Query: 201 aacgtttagtaattgcaattgttgttggtttgatttaaatgccaatggtgtagacatctg 260 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1502 aacgtttagtaattgcaattgttgttggtttgatttaaatgccaatggtgcagacatctg 1443 Query: 261 tgatccagctttgggatttctaaatcgcatgcccaatatatgtacatagctagtcgttgt 320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1442 tgatccagctttgggatttctaaatcgcatgcccaatatatgtacatagctagtcgttgt 1383 Query: 321 acgtatctatccaatggtacgatccaatggtacgattacaatttgttttcgcaaggacat 380 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1382 acgtatctatccaatggtgcgatccaatggtacgattacaatttgttttcgcaaggacat 1323 Query: 381 gctgcgctttctcctgatccggtgacagcggcatggatcgccttggccacatattcaacg 440 | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1322 gatgcactttctcctgatccggtgacagcggcatggatcgccttggccacatattcaacg 1263 Query: 441 ttgcccttattcaggccactcatgctgatgcgtcccgtcttcagcaggtaaatgtggtac 500 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1262 ttgcccttattcaggccactcatgctgatgcgtcccgtcttcagcaggtaaatgtggtac 1203 Query: 501 tggtcgatcagcacacgaacatggctctcgttcagaccggtgtaggagaacatgccgatc 560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1202 tggtcgatcagcacacgaacatggctctcgttcagaccggtgtaggagaacatgccgatc 1143 Query: 561 tggttgacaatatgatcccaggtgccgggtgtgcccaaggcaaccagcttgtcccgcaaa 620 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1142 tggttgacaatgtgatcccaggtgccgggggtgcccaaggcaaccagcttgtcccgcaaa 1083 Query: 621 gctgtacgcatctcgcggatgcggctcgacattgcct 657 ||||||||||||||||||||||||||||||||||||| Sbjct: 1082 gctgtacgcatctcgcggatgcggctcgacattgcct 1046 >CG8430-RA feature: mRNA loc=2R:join(11202401..11202609,11204055..11204162, 11204225..11204298, 11204359..11205659);ID=FBan0008430;gene_id=FBgn0034079;ge ne_sym=CG8430;sym=CG8430;scaffold=AE003808;len=1692 Length = 1692 Score = 1207 bits (609), Expect = 0.0 Identities = 630/637 (98%) Strand = Plus / Minus Query: 21 aatgttattgtcgatttatttagttactacacacaggtcaataaacgttgtaagcttaaa 80 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1686 aatgatattgtcgatttatttagttactacacacaggtcaataaacgttgtaagcttaaa 1627 Query: 81 ttatttaaccaatcttcgacggctttcaatagtgcgtaatttttgtaaagtttttacttt 140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1626 ttatttaaccaatcttcgacggctttcaatagtgcgtaatttttgtaaagtttttacttt 1567 Query: 141 aatgtggaacattcgtttccggtgtataatatgtgtatatccatctaaaagccgcgtata 200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1566 aatgtggaacattcgtttccggtgtataatatgtgtatatccatctaaaagccgcgtata 1507 Query: 201 aacgtttagtaattgcaattgttgttggtttgatttaaatgccaatggtgtagacatctg 260 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1506 aacgtttagtaattgcaattgttgttggtttgatttaaatgccaatggtgcagacatctg 1447 Query: 261 tgatccagctttgggatttctaaatcgcatgcccaatatatgtacatagctagtcgttgt 320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1446 tgatccagctttgggatttctaaatcgcatgcccaatatatgtacatagctagtcgttgt 1387 Query: 321 acgtatctatccaatggtacgatccaatggtacgattacaatttgttttcgcaaggacat 380 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1386 acgtatctatccaatggtgcgatccaatggtacgattacaatttgttttcgcaaggacat 1327 Query: 381 gctgcgctttctcctgatccggtgacagcggcatggatcgccttggccacatattcaacg 440 | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1326 gatgcactttctcctgatccggtgacagcggcatggatcgccttggccacatattcaacg 1267 Query: 441 ttgcccttattcaggccactcatgctgatgcgtcccgtcttcagcaggtaaatgtggtac 500 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1266 ttgcccttattcaggccactcatgctgatgcgtcccgtcttcagcaggtaaatgtggtac 1207 Query: 501 tggtcgatcagcacacgaacatggctctcgttcagaccggtgtaggagaacatgccgatc 560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1206 tggtcgatcagcacacgaacatggctctcgttcagaccggtgtaggagaacatgccgatc 1147 Query: 561 tggttgacaatatgatcccaggtgccgggtgtgcccaaggcaaccagcttgtcccgcaaa 620 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1146 tggttgacaatgtgatcccaggtgccgggggtgcccaaggcaaccagcttgtcccgcaaa 1087 Query: 621 gctgtacgcatctcgcggatgcggctcgacattgcct 657 ||||||||||||||||||||||||||||||||||||| Sbjct: 1086 gctgtacgcatctcgcggatgcggctcgacattgcct 1050 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,065 Number of Sequences: 18737 Number of extensions: 15065 Number of successful extensions: 309 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 305 Number of HSP's gapped (non-prelim): 2 length of query: 657 length of database: 41,270,998 effective HSP length: 17 effective length of query: 640 effective length of database: 40,952,469 effective search space: 26209580160 effective search space used: 26209580160 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945517|AI945517 bs13g05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs13g05 5', mRNA sequence. (673 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value tai-RA feature: mRNA loc=2L:join(9159033..9159669,9183846..91840... 398 e-110 >tai-RA feature: mRNA loc=2L:join(9159033..9159669,9183846..9184044, 9226223..9226892,9227337..9227498,9231193..9231997, 9232057..9233504,9233611..9233784,9233841..9235413, 9235470..9235780,9235847..9236135,9236498..9236821, 9237621..9237947, 9238012..9238621);ID=FBan0013109;gene_id=FBgn0041092;gen e_sym=tai;sym=CG13109;scaffold=AE003624;len=7529 Length = 7529 Score = 398 bits (201), Expect = e-110 Identities = 213/217 (98%) Strand = Plus / Plus Query: 8 gtttgccgattaaaaaattacgctttttgtttgaaaacgaaatattaactgctgtgctat 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11 gtttgccgattaaaaaattacgctttttgtttgaaaacgaaatattaactgctgtgctat 70 Query: 68 tgaaatactgtcagaattaaaagatattctatctggcctgccatctcttattgtcataca 127 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 71 tgaaactctgtcagaattaaaagatattctatctggcctgccatctcttattgtcataca 130 Query: 128 acaagaagtcttgtgtcgcagctaaaggcgtgaaatggatcaattaaacttataaacaaa 187 ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct: 131 acaagaagtcttgtgacacagctaaaggcgtgaaatggatcaattaaacttataaacaaa 190 Query: 188 ttgtttgtttcttttgactgaaatacttgtacggttt 224 ||||||||||||||||||||||||||||||||||||| Sbjct: 191 ttgtttgtttcttttgactgaaatacttgtacggttt 227 Score = 389 bits (196), Expect = e-107 Identities = 208/212 (98%) Strand = Plus / Plus Query: 281 ttggtgattttctgataactcacatcgcagcaaacagcgaaagcaagagcaacaataaca 340 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 284 ttggtgattttctgataactcacatcgcagcaaacagcgaaagcaaaagcaacaataaca 343 Query: 341 aattgcagcaacaacgtcacacgtctgcgacacctgcgtcgctgtcgccaaagttgtgtt 400 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 344 aattgcagcaacaacgtcacacgtctgcgacacctgcgtcgctgtcgccaaagttgtgtt 403 Query: 401 gttattgttacttttgcggctgtcgccgctgtcgtcgccatcggcttttgtttatttgtt 460 |||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 404 gttatttttactgttgctgctgtcgccgctgtcgtcgccatcggcttttgtttatttgtt 463 Query: 461 gttgcgtcgcgtcgtaaagaaggaaaagcgcc 492 |||||||||||||||||||||||||||||||| Sbjct: 464 gttgcgtcgcgtcgtaaagaaggaaaagcgcc 495 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 17,809 Number of Sequences: 18737 Number of extensions: 17809 Number of successful extensions: 515 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 510 Number of HSP's gapped (non-prelim): 5 length of query: 673 length of database: 41,270,998 effective HSP length: 17 effective length of query: 656 effective length of database: 40,952,469 effective search space: 26864819664 effective search space used: 26864819664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945518|AI945518 bs13g06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs13g06 5', mRNA sequence. (589 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG2225-RE feature: mRNA loc=2L:complement(21496927..21496957,214... 995 0.0 >CG2225-RE feature: mRNA loc=2L:complement(21496927..21496957,21498341..21499125, 21499184..21499527,21501414..21502359,21502488..21503034, 21503656..21504261,21504350..21504512,21505411..21505590, 21505978..21506393, 21510620..21510651);ID=FBan0002225;gene_id=FBgn0032957;ge ne_sym=CG2225;sym=CG2225;scaffold=AE003781;len=4050 Length = 4050 Score = 995 bits (502), Expect = 0.0 Identities = 536/551 (97%) Strand = Plus / Minus Query: 39 aaatttaaaccaaaatttttaaatttaatctagcgttagggacgtcaagtaagcgtgaca 98 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3487 aaatttaaaccaaaatttttaaatttaatctagcgttagggacgtcaagtaagcgtgaca 3428 Query: 99 gtattttgaagcaaacaatttcatataaattattttacgcaatttgcttcattttcgtaa 158 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3427 atattttgaagcaaacaatttcatataaattattttacgcaatttgcttcattttcgtaa 3368 Query: 159 cttcaatgatatgtgtacttctcagatatgcgttttaaactcttacccgattcaaattca 218 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3367 cttcaatgatatgtgtacttctcagatatgcgttttaaactcttacccgattcaaattca 3308 Query: 219 tagacatgcttgctgttgctatcatccataagctgatcgcagtacgccttatgttttcga 278 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3307 tagacatgcttgctgttgctatcatccataagctgatcgcagtacgccttatgttttcga 3248 Query: 279 tctttgctgnnnnnnnnnnnggttatcagcaaactagtaacacgccgtaaagcctcgcgg 338 ||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct: 3247 tctttgctgtttttttttttggttatcagcaaactagtaacacgccgtagagcctcgcgg 3188 Query: 339 ggtgatttattcaagaaggaaggtgtaagatttggtggcagtgttaaaggcttacgagat 398 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3187 ggtgatttattcaagaaggaaggtgtaagatttggtggcagtgttaaaggcttacgagat 3128 Query: 399 tgtccggtgcccgacatgaccgtcggattgtcccacacccgcatggaagccattcgatct 458 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3127 tgtccggtgcccgacatgaccgtcggattgtcccacacccgcatggaagccattcgatct 3068 Query: 459 atgttctcggtggagacgggtcgcattccccgttgcttgggataccattcttgagccggg 518 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 3067 atgttctcggtggagacgggtcgcattccccgttgcttgggataccatcctcgagccggg 3008 Query: 519 gccccggtcatgcgaagcatttcgttggaggccaaggcatgatttattgagcgctgacgg 578 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3007 gccccggtcatgcgaagcatttcgttggaggccaaggcatgatttattgagcgctgacgg 2948 Query: 579 caaatttgggc 589 ||||||||||| Sbjct: 2947 caaatttgggc 2937 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,459 Number of Sequences: 18737 Number of extensions: 11459 Number of successful extensions: 217 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 215 Number of HSP's gapped (non-prelim): 2 length of query: 589 length of database: 41,270,998 effective HSP length: 17 effective length of query: 572 effective length of database: 40,952,469 effective search space: 23424812268 effective search space used: 23424812268 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945521|AI945521 bs13g09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs13g09 5', mRNA sequence. (334 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Hus1-like-RA feature: mRNA loc=3R:complement(634083..634995,6377... 591 e-168 >Hus1-like-RA feature: mRNA loc=3R:complement(634083..634995, 637704..637782);ID=FBan0002525;gene_id=FBgn0026417;gene_ sym=Hus1-like;sym=CG2525;scaffold=AE003605;len=992 Length = 992 Score = 591 bits (298), Expect = e-168 Identities = 298/298 (100%) Strand = Plus / Minus Query: 33 acacctgaatacatcaagtcgcatttattacagctatgataaacataccagctcttaggc 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 990 acacctgaatacatcaagtcgcatttattacagctatgataaacataccagctcttaggc 931 Query: 93 tacatacaaacagctggcagaatagagtgcagaaccacatcctgtcgtacatcgatctgc 152 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 930 tacatacaaacagctggcagaatagagtgcagaaccacatcctgtcgtacatcgatctgc 871 Query: 153 agatggatggaatgctcacggtcaatgccaatagtcagttcttcgttagggagttgaagt 212 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 870 agatggatggaatgctcacggtcaatgccaatagtcagttcttcgttagggagttgaagt 811 Query: 213 gctccaaagaaggccgaggctttccttgaatccacagagcaggacgcttcctgctgggat 272 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 810 gctccaaagaaggccgaggctttccttgaatccacagagcaggacgcttcctgctgggat 751 Query: 273 cctgacacagttcgaattagtaatttctggaatcgactagtcacagtggacatttcag 330 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 750 cctgacacagttcgaattagtaatttctggaatcgactagtcacagtggacatttcag 693 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6159 Number of Sequences: 18737 Number of extensions: 6159 Number of successful extensions: 479 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 478 Number of HSP's gapped (non-prelim): 1 length of query: 334 length of database: 41,270,998 effective HSP length: 16 effective length of query: 318 effective length of database: 40,971,206 effective search space: 13028843508 effective search space used: 13028843508 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945536|AI945536 bs13h12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs13h12 5', mRNA sequence. (131 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 0 Number of Sequences: 18737 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 131 length of database: 41,270,998 effective HSP length: 16 effective length of query: 115 effective length of database: 40,971,206 effective search space: 4711688690 effective search space used: 4711688690 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945540|AI945540 bs14a07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs14a07 5', mRNA sequence. (415 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9623 Number of Sequences: 18737 Number of extensions: 9623 Number of successful extensions: 775 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 775 Number of HSP's gapped (non-prelim): 0 length of query: 415 length of database: 41,270,998 effective HSP length: 17 effective length of query: 398 effective length of database: 40,952,469 effective search space: 16299082662 effective search space used: 16299082662 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945545|AI945545 bs14b01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs14b01 5', mRNA sequence. (322 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5888 Number of Sequences: 18737 Number of extensions: 5888 Number of successful extensions: 443 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 443 Number of HSP's gapped (non-prelim): 0 length of query: 322 length of database: 41,270,998 effective HSP length: 16 effective length of query: 306 effective length of database: 40,971,206 effective search space: 12537189036 effective search space used: 12537189036 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945546|AI945546 bs14b02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs14b02 5', mRNA sequence. (281 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4834 Number of Sequences: 18737 Number of extensions: 4834 Number of successful extensions: 352 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 352 Number of HSP's gapped (non-prelim): 0 length of query: 281 length of database: 41,270,998 effective HSP length: 16 effective length of query: 265 effective length of database: 40,971,206 effective search space: 10857369590 effective search space used: 10857369590 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945549|AI945549 bs14b05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs14b05 5', mRNA sequence. (323 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31414-RA feature: mRNA loc=3R:join(19521279..19521486,19521729... 408 e-113 >CG31414-RA feature: mRNA loc=3R:join(19521279..19521486,19521729..19521888, 19521960..19522107,19522160..19522480,19522538..19522667, 19522746..19522859,19522920..19523443, 19524191..19524290);ID=FBan0031414;gene_id=FBgn0051414;ge ne_sym=CG31414;sym=CG31414;scaffold=AE003744;len=1705 Length = 1705 Score = 408 bits (206), Expect = e-113 Identities = 206/206 (100%) Strand = Plus / Minus Query: 118 ccattgtagattatcaacgccacactgccgtctggtcgctggaagccaacaacactcagc 177 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1605 ccattgtagattatcaacgccacactgccgtctggtcgctggaagccaacaacactcagc 1546 Query: 178 tgggtgaagggattgctctggttctcgatccgcgtctcgatgcgcacggagtccggcggc 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1545 tgggtgaagggattgctctggttctcgatccgcgtctcgatgcgcacggagtccggcggc 1486 Query: 238 agaaacttggagaagtggcctatggcatagaaaatcggctgtttgtatatctcagaacga 297 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1485 agaaacttggagaagtggcctatggcatagaaaatcggctgtttgtatatctcagaacga 1426 Query: 298 ctcgtggcattcacaataatcggagc 323 |||||||||||||||||||||||||| Sbjct: 1425 ctcgtggcattcacaataatcggagc 1400 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6509 Number of Sequences: 18737 Number of extensions: 6509 Number of successful extensions: 443 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 442 Number of HSP's gapped (non-prelim): 1 length of query: 323 length of database: 41,270,998 effective HSP length: 16 effective length of query: 307 effective length of database: 40,971,206 effective search space: 12578160242 effective search space used: 12578160242 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945551|AI945551 bs14b07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs14b07 5', mRNA sequence. (330 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7202 Number of Sequences: 18737 Number of extensions: 7202 Number of successful extensions: 580 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 580 Number of HSP's gapped (non-prelim): 0 length of query: 330 length of database: 41,270,998 effective HSP length: 16 effective length of query: 314 effective length of database: 40,971,206 effective search space: 12864958684 effective search space used: 12864958684 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945563|AI945563 bs14c07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs14c07 5', mRNA sequence. (449 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,901 Number of Sequences: 18737 Number of extensions: 11901 Number of successful extensions: 1041 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1041 Number of HSP's gapped (non-prelim): 0 length of query: 449 length of database: 41,270,998 effective HSP length: 17 effective length of query: 432 effective length of database: 40,952,469 effective search space: 17691466608 effective search space used: 17691466608 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945564|AI945564 bs14c08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs14c08 5', mRNA sequence. (406 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7357 Number of Sequences: 18737 Number of extensions: 7357 Number of successful extensions: 507 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 507 Number of HSP's gapped (non-prelim): 0 length of query: 406 length of database: 41,270,998 effective HSP length: 17 effective length of query: 389 effective length of database: 40,952,469 effective search space: 15930510441 effective search space used: 15930510441 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945579|AI945579 bs14d11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs14d11 5', mRNA sequence. (418 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 17,117 Number of Sequences: 18737 Number of extensions: 17117 Number of successful extensions: 3845 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3845 Number of HSP's gapped (non-prelim): 0 length of query: 418 length of database: 41,270,998 effective HSP length: 17 effective length of query: 401 effective length of database: 40,952,469 effective search space: 16421940069 effective search space used: 16421940069 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945589|AI945589 bs14e09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs14e09 5', mRNA sequence. (362 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7515 Number of Sequences: 18737 Number of extensions: 7515 Number of successful extensions: 549 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 549 Number of HSP's gapped (non-prelim): 0 length of query: 362 length of database: 41,270,998 effective HSP length: 17 effective length of query: 345 effective length of database: 40,952,469 effective search space: 14128601805 effective search space used: 14128601805 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945598|AI945598 bs14f06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs14f06 5', mRNA sequence. (309 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7237 Number of Sequences: 18737 Number of extensions: 7237 Number of successful extensions: 620 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 620 Number of HSP's gapped (non-prelim): 0 length of query: 309 length of database: 41,270,998 effective HSP length: 16 effective length of query: 293 effective length of database: 40,971,206 effective search space: 12004563358 effective search space used: 12004563358 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945610|AI945610 bs14g06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs14g06 5', mRNA sequence. (304 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5223 Number of Sequences: 18737 Number of extensions: 5223 Number of successful extensions: 361 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 361 Number of HSP's gapped (non-prelim): 0 length of query: 304 length of database: 41,270,998 effective HSP length: 16 effective length of query: 288 effective length of database: 40,971,206 effective search space: 11799707328 effective search space used: 11799707328 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945630|AI945630 bs15a03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs15a03 5', mRNA sequence. (475 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value alphaTub84B-RA feature: mRNA loc=3R:join(2912261..2912467,291295... 825 0.0 >alphaTub84B-RA feature: mRNA loc=3R:join(2912261..2912467, 2912957..2914583);ID=FBan0001913;gene_id=FBgn0003884;gene _sym=alphaTub84B;sym=CG1913;scaffold=AE003672;len=1834 Length = 1834 Score = 825 bits (416), Expect = 0.0 Identities = 435/440 (98%), Gaps = 1/440 (0%) Strand = Plus / Minus Query: 36 cttatttctgacaacactgaatctggccgattttattcttgtgtacacaacttatcgccg 95 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1813 cttatttctgacaacactgaatctggccgattttattcttgtgtacacaacttatcgccg 1754 Query: 96 agttaacttggcttttctgctatacgtatctttgtggataaaatactttatggtttctcg 155 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1753 agttaacttggcttttctgctatacgtgtctttgtggataaaatactttatggtttctcg 1694 Query: 156 tacaatcttcatcgttttcgtatgcttttcagtgttgcagtgaattttttgttgcgattg 215 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1693 tacaatcttcatcgttttcgtatgcttttcagtgttgcagtgaattttttgttgcgattg 1634 Query: 216 gaagcgtaaacactgatttcgacggttaccccgcccaccaatgacgctcccatcgagcgt 275 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1633 gaagcgtaaacactgatttcgacggttaccccgcccaccaatgacgctcccatcgagcgt 1574 Query: 276 tgaagtggcgtgacgcttagtactcctcagcgccctcaccctcgccgtcaccggagtcca 335 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1573 tgaagtggcgtgacgcttagtactcctcagcgccctcaccctcgccgtcaccggagtcca 1514 Query: 336 tggccgacctccttggagtccttttcgagggcagccaaatcctcacgggcctcggagaac 395 | ||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 1513 t-gccgacctcctcgtagtccttctcgagggcagccaaatcctcacgggcctcggagaac 1455 Query: 396 tctccctcctccataccctcaccaacgtaccagtggacgaaggcacgcttggcgtacatc 455 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1454 tctccctcctccataccctcaccaacgtaccagtggacgaaggcacgcttggcgtacatc 1395 Query: 456 agatcgaacttgtggtccag 475 |||||||||||||||||||| Sbjct: 1394 agatcgaacttgtggtccag 1375 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8817 Number of Sequences: 18737 Number of extensions: 8817 Number of successful extensions: 215 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 213 Number of HSP's gapped (non-prelim): 1 length of query: 475 length of database: 41,270,998 effective HSP length: 17 effective length of query: 458 effective length of database: 40,952,469 effective search space: 18756230802 effective search space used: 18756230802 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945634|AI945634 bs15a07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs15a07 5', mRNA sequence. (489 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,996 Number of Sequences: 18737 Number of extensions: 13996 Number of successful extensions: 570 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 570 Number of HSP's gapped (non-prelim): 0 length of query: 489 length of database: 41,270,998 effective HSP length: 17 effective length of query: 472 effective length of database: 40,952,469 effective search space: 19329565368 effective search space used: 19329565368 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945635|AI945635 bs15a08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs15a08 5', mRNA sequence. (473 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG17510-RB feature: mRNA loc=2R:complement(742684..742883,743115... 860 0.0 CG17510-RA feature: mRNA loc=2R:complement(742457..742632,742771... 634 0.0 >CG17510-RB feature: mRNA loc=2R:complement(742684..742883,743115..743282, 743339..743387, 743454..743483);ID=FBan0017510;gene_id=FBgn0039969;gene_ sym=CG17510;sym=CG17510;scaffold=AE003786;len=447 Length = 447 Score = 860 bits (434), Expect = 0.0 Identities = 443/445 (99%), Gaps = 2/445 (0%) Strand = Plus / Minus Query: 31 aatttaaatcataaatatttaattttcaactgcttgtttttaaaagaacattgtcggtta 90 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 445 aatttaaatcataaatatttaattttcaactgcttgtttttaaaagaacattgtcggtta 386 Query: 91 aaaacgtgttggtataaaatattactttctagccatagcaatgccaagtcctaatattcc 150 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 385 aaaacgtgttggtataaaatattactttctagccatagcaatgccaagtcctaatattcc 326 Query: 151 gccaagtactaaagctgctccgcctgcaaccaccataccctttgccacttccttatcgat 210 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 325 gccaagtactaaagctgctccgcctgcaaccaccataccctttgccacttccttatcgat 266 Query: 211 ttcttttttaatatattcctctagggagcgaacttgatcatttgactcgatgtcaagaaa 270 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 265 ttcttttttaatatattcctctagggagcgaacttgatcatttgactcgatgtcaagaaa 206 Query: 271 agctcggcagtattttaagccagacgtatactccttgatacgagcattaccaaacgcaag 330 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 205 agctcggcagtattttaagccagacgtatactccttgatacgagcattaccaaacgcaag 146 Query: 331 ata--atatatagtcacgccttccatctggatgcgtacgagccagttcctccaaaatcat 388 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 145 ataatatatatagtcacgccttccatctggatgcgtacgagccagttcctccaaaatcat 86 Query: 389 aattccctttctaacgtcatttgtgtaccgacttcggaccagacagaatgcgtactcaaa 448 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 85 aattccctttctaacgtcatttgtgtaccgacttcggaccagacagaatgcgtactcaaa 26 Query: 449 ctttgtgtctgtggtaacttcacca 473 ||||||||||||||||||||||||| Sbjct: 25 ctttgtgtctgtggtaacttcacca 1 >CG17510-RA feature: mRNA loc=2R:complement(742457..742632,742771..742883, 743115..743282,743339..743387, 743581..743699);ID=FBan0017510;gene_id=FBgn0039969;gene_ sym=CG17510;sym=CG17510;scaffold=AE003786;len=625 Length = 625 Score = 634 bits (320), Expect = 0.0 Identities = 329/331 (99%), Gaps = 2/331 (0%) Strand = Plus / Minus Query: 116 tttctagccatagcaatgccaagtcctaatattccgccaagtactaaagctgctccgcct 175 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 449 tttctagccatagcaatgccaagtcctaatattccgccaagtactaaagctgctccgcct 390 Query: 176 gcaaccaccataccctttgccacttccttatcgatttcttttttaatatattcctctagg 235 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 389 gcaaccaccataccctttgccacttccttatcgatttcttttttaatatattcctctagg 330 Query: 236 gagcgaacttgatcatttgactcgatgtcaagaaaagctcggcagtattttaagccagac 295 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 329 gagcgaacttgatcatttgactcgatgtcaagaaaagctcggcagtattttaagccagac 270 Query: 296 gtatactccttgatacgagcattaccaaacgcaagata--atatatagtcacgccttcca 353 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 269 gtatactccttgatacgagcattaccaaacgcaagataatatatatagtcacgccttcca 210 Query: 354 tctggatgcgtacgagccagttcctccaaaatcataattccctttctaacgtcatttgtg 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 209 tctggatgcgtacgagccagttcctccaaaatcataattccctttctaacgtcatttgtg 150 Query: 414 taccgacttcggaccagacagaatgcgtact 444 ||||||||||||||||||||||||||||||| Sbjct: 149 taccgacttcggaccagacagaatgcgtact 119 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,082 Number of Sequences: 18737 Number of extensions: 10082 Number of successful extensions: 221 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 217 Number of HSP's gapped (non-prelim): 2 length of query: 473 length of database: 41,270,998 effective HSP length: 17 effective length of query: 456 effective length of database: 40,952,469 effective search space: 18674325864 effective search space used: 18674325864 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945638|AI945638 bs15a12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs15a12 5', mRNA sequence. (443 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7419 Number of Sequences: 18737 Number of extensions: 7419 Number of successful extensions: 574 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 574 Number of HSP's gapped (non-prelim): 0 length of query: 443 length of database: 41,270,998 effective HSP length: 17 effective length of query: 426 effective length of database: 40,952,469 effective search space: 17445751794 effective search space used: 17445751794 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945651|AI945651 bs15c01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs15c01 5', mRNA sequence. (464 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31231-RA feature: mRNA loc=3R:join(14491100..14492731,14492800... 775 0.0 >CG31231-RA feature: mRNA loc=3R:join(14491100..14492731,14492800..14492896, 14492961..14493431);ID=FBan0031231;gene_id=FBgn0051231;ge ne_sym=CG31231;sym=CG31231;scaffold=AE003723;len=2200 Length = 2200 Score = 775 bits (391), Expect = 0.0 Identities = 394/395 (99%) Strand = Plus / Minus Query: 70 gacagttatataaggtacactcaaatttatttgtgaaaatccttagaaaattagaaatgc 129 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2200 gacagttatataaggtacactcaaatttatttgtgaaaatccttagaaaattagaaatgc 2141 Query: 130 atcctaattaactaagataccgtatcgaaaaactggactggtacttggagtcttcgcagg 189 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2140 atcctaattaactaagataccgtatcgaaaaactggactggtacttggagtcttcgcagg 2081 Query: 190 cgcgaatgcgtttccccaactcgttgcaggtcttcttcatggcctggatgtgactacggc 249 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2080 cgcgaatgcgtttacccaactcgttgcaggtcttcttcatggcctggatgtgactacggc 2021 Query: 250 gggcctgtatatcggccatgcacttatcgtagtcgtacatcaggcccggcttgaacagca 309 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2020 gggcctgtatatcggccatgcacttatcgtagtcgtacatcaggcccggcttgaacagca 1961 Query: 310 gtccgcccttggtctccagcttgtcccgcttggtcttgaggtcggcgtgctccagctgca 369 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1960 gtccgcccttggtctccagcttgtcccgcttggtcttgaggtcggcgtgctccagctgca 1901 Query: 370 gcctggtcagatccttgcgcagcttgtttcgccgctcgaatcgatctatatactcggccc 429 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1900 gcctggtcagatccttgcgcagcttgtttcgccgctcgaatcgatctatatactcggccc 1841 Query: 430 tcgccttggagagcatgtaggagatcatgtcccgc 464 ||||||||||||||||||||||||||||||||||| Sbjct: 1840 tcgccttggagagcatgtaggagatcatgtcccgc 1806 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,918 Number of Sequences: 18737 Number of extensions: 10918 Number of successful extensions: 313 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 312 Number of HSP's gapped (non-prelim): 1 length of query: 464 length of database: 41,270,998 effective HSP length: 17 effective length of query: 447 effective length of database: 40,952,469 effective search space: 18305753643 effective search space used: 18305753643 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945657|AI945657 bs15c08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs15c08 5', mRNA sequence. (438 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG10124-RA feature: mRNA loc=3L:complement(6623757..6624120,6624... 809 0.0 >CG10124-RA feature: mRNA loc=3L:complement(6623757..6624120,6624376..6624463, 6624544..6624643, 6624696..6625170);ID=FBan0010124;gene_id=FBgn0035709;gen e_sym=CG10124;sym=CG10124;scaffold=AE003561;len=1027 Length = 1027 Score = 809 bits (408), Expect = 0.0 Identities = 411/412 (99%) Strand = Plus / Minus Query: 27 cggatacacgcgctggaaacagcattcagaggcataagcggccatggaaatgtgggtggt 86 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 925 cggatacacgcgctggaaacagcattcagaggcataagcggccatggaaatgtgggtggt 866 Query: 87 tggtggatggagtggtgggtggcatccaaaacggagacggcttacacgcaataaaccgct 146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 865 tggtggatggagtggtgggtggcatccaaaacggagacggcttacacgcaataaaccgct 806 Query: 147 ttgatcaccgatccctgcttgcacatagtgtccttgtgcagctggtactgcagttggtgg 206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 805 ttgatcaccgatccctgcttgcacatagtgtccttgtgcagctggtactgcagttggtgg 746 Query: 207 ggcggcaggacgagcaggtcgcgtaacttgagtccaatctccatgacggccagctcgttg 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 745 ggcggcaggacgagcaggtcgcgtaacttgagtccaatctccatgacggccagctcgttg 686 Query: 267 tgcccgttggcggtccaaatcgaaattttgttgctcttcccgcgcaagttgataacagcg 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 685 tgcccgttggcggtccaaatcgaaattttgttgctcttcccgcgcaagttgataacggcg 626 Query: 327 ccgcagacttcctcggtgttttcaaaggcctcgccaatcagtatgagtagcacatctaac 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 625 ccgcagacttcctcggtgttttcaaaggcctcgccaatcagtatgagtagcacatctaac 566 Query: 387 caaagcttgtcgagctccgctttggagccacgccccatattgatgacccaac 438 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 565 caaagcttgtcgagctccgctttggagccacgccccatattgatgacccaac 514 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9959 Number of Sequences: 18737 Number of extensions: 9959 Number of successful extensions: 847 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 846 Number of HSP's gapped (non-prelim): 1 length of query: 438 length of database: 41,270,998 effective HSP length: 17 effective length of query: 421 effective length of database: 40,952,469 effective search space: 17240989449 effective search space used: 17240989449 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945661|AI945661 bs15c12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs15c12 5', mRNA sequence. (457 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8632 Number of Sequences: 18737 Number of extensions: 8632 Number of successful extensions: 204 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 204 Number of HSP's gapped (non-prelim): 0 length of query: 457 length of database: 41,270,998 effective HSP length: 17 effective length of query: 440 effective length of database: 40,952,469 effective search space: 18019086360 effective search space used: 18019086360 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945673|AI945673 bs15e07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs15e07 5', mRNA sequence. (461 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG4719-RA feature: mRNA loc=3R:complement(21468172..21469696,214... 900 0.0 >CG4719-RA feature: mRNA loc=3R:complement(21468172..21469696,21469757..21469913, 21469982..21470274,21470339..21470496,21470557..21472437, 21472502..21473284, 21475679..21476368);ID=FBan0004719;gene_id=FBgn0027508;ge ne_sym=CG4719;sym=CG4719;scaffold=AE003752;len=5487 Length = 5487 Score = 900 bits (454), Expect = 0.0 Identities = 454/454 (100%) Strand = Plus / Minus Query: 8 ccgctctctcagctccctggtgggcgccgcatcgatggccgacttgctgtggcagtttag 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1466 ccgctctctcagctccctggtgggcgccgcatcgatggccgacttgctgtggcagtttag 1407 Query: 68 gagggtgggatccgctccacgactgagcagcaggctgcagacctcgacgcgacttttgga 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1406 gagggtgggatccgctccacgactgagcagcaggctgcagacctcgacgcgacttttgga 1347 Query: 128 ggcggcctcgtggagcggcgtaaaggcccacagatcgttggcgttgacattggcgcccgc 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1346 ggcggcctcgtggagcggcgtaaaggcccacagatcgttggcgttgacattggcgcccgc 1287 Query: 188 ctggataagcagcttggtcacatcgaagtgtccgtaggagcaggcattgtgcagcggcac 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1286 ctggataagcagcttggtcacatcgaagtgtccgtaggagcaggcattgtgcagcggcac 1227 Query: 248 cagaccgcccttgtccttagcatgtacatccgctccgttggccagcagaatttccacgat 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1226 cagaccgcccttgtccttagcatgtacatccgctccgttggccagcagaatttccacgat 1167 Query: 308 gccgatccgattgtagcccgctgccagatggagcggcgttgagcgtcgtccatcgctggc 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1166 gccgatccgattgtagcccgctgccagatggagcggcgttgagcgtcgtccatcgctggc 1107 Query: 368 atgacagttgacattgagtggcgtgagtagggccagcaggcgatcctcggcccccgagcg 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1106 atgacagttgacattgagtggcgtgagtagggccagcaggcgatcctcggcccccgagcg 1047 Query: 428 tgcggcttcaagcagctcatcctttcgatattcg 461 |||||||||||||||||||||||||||||||||| Sbjct: 1046 tgcggcttcaagcagctcatcctttcgatattcg 1013 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,386 Number of Sequences: 18737 Number of extensions: 13386 Number of successful extensions: 319 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 316 Number of HSP's gapped (non-prelim): 3 length of query: 461 length of database: 41,270,998 effective HSP length: 17 effective length of query: 444 effective length of database: 40,952,469 effective search space: 18182896236 effective search space used: 18182896236 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945679|AI945679 bs15f01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs15f01 5', mRNA sequence. (474 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG14995-RD feature: mRNA loc=3L:complement(4074964..4075748,4075... 825 0.0 CG14995-RC feature: mRNA loc=3L:complement(4074964..4075748,4075... 825 0.0 CG14995-RB feature: mRNA loc=3L:complement(4074964..4075748,4075... 825 0.0 CG14995-RA feature: mRNA loc=3L:complement(4074964..4075748,4075... 825 0.0 >CG14995-RD feature: mRNA loc=3L:complement(4074964..4075748,4075826..4075919, 4076262..4076500,4078133..4078430,4078652..4078825, 4081406..4081471, 4082103..4083544);ID=FBan0014995;gene_id=FBgn0035497;gene _sym=CG14995;sym=CG14995;scaffold=AE003480;len=3098 Length = 3098 Score = 825 bits (416), Expect = 0.0 Identities = 444/453 (98%), Gaps = 2/453 (0%) Strand = Plus / Minus Query: 23 gcattttaggtaaatatattaaaattaaggtttagcgttatttgcttt-gcgtacaaata 81 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 3010 gcattttaggtaaatatattaaaattaaggtttagcgttatttgcttttgcgtacaaata 2951 Query: 82 tttaacaaagtcatgagtatgatttcaactaatcttattaagaatctaggaagatacatt 141 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2950 tttaacaaagtcatgagtatgatttcaactaatcttattaagaatctaggaagatacatt 2891 Query: 142 gtgctccttcgccttgggcgacattagttcgctagtcgatcttctcgagttaagtacnnn 201 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2890 gtgctccttcgccttgggcgacattagttcgctagtcgatcttctcgagttaagtacaaa 2831 Query: 202 nnnnngggctagtttttgtggtctgtgcttgggattgattgggtatcaaatgaacaggat 261 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2830 aaaa-gggctagtttttgtggtctgtgcttgggattgattgggtatcaaatgaacaggat 2772 Query: 262 ctgggatcaataggcggattatgttctagcttactgtttcgttatgtgtttacaatagca 321 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2771 ctgggatcaataggcggattatgttctagcttactgtttcgttatgtgtttacaatagca 2712 Query: 322 aagttcgttacataacaaaatgcttacaaaagttgctagttacactatgacagttttcaa 381 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2711 aagttcgttacataacaaaatgcttacaaaagttgctagttacactatgacagttttcaa 2652 Query: 382 ttggcaagtatgaatccttatcctcgttaagtatctgatttgtaattgttaattgttgct 441 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2651 ttggcaagtatgaatccttatcctcgttaagtatctgatttgtaattgttaattgttgct 2592 Query: 442 taagacgttagtataatatcagttttccccttt 474 ||||||||||||||||||||||||||||||||| Sbjct: 2591 taagacgttagtataatatcagttttccccttt 2559 >CG14995-RC feature: mRNA loc=3L:complement(4074964..4075748,4075826..4075919, 4076262..4076500,4076598..4076693,4077530..4077604, 4078133..4078430,4078652..4078825,4081406..4081471, 4082103..4083544);ID=FBan0014995;gene_id=FBgn0035497;gene _sym=CG14995;sym=CG14995;scaffold=AE003480;len=3269 Length = 3269 Score = 825 bits (416), Expect = 0.0 Identities = 444/453 (98%), Gaps = 2/453 (0%) Strand = Plus / Minus Query: 23 gcattttaggtaaatatattaaaattaaggtttagcgttatttgcttt-gcgtacaaata 81 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 3181 gcattttaggtaaatatattaaaattaaggtttagcgttatttgcttttgcgtacaaata 3122 Query: 82 tttaacaaagtcatgagtatgatttcaactaatcttattaagaatctaggaagatacatt 141 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3121 tttaacaaagtcatgagtatgatttcaactaatcttattaagaatctaggaagatacatt 3062 Query: 142 gtgctccttcgccttgggcgacattagttcgctagtcgatcttctcgagttaagtacnnn 201 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3061 gtgctccttcgccttgggcgacattagttcgctagtcgatcttctcgagttaagtacaaa 3002 Query: 202 nnnnngggctagtttttgtggtctgtgcttgggattgattgggtatcaaatgaacaggat 261 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3001 aaaa-gggctagtttttgtggtctgtgcttgggattgattgggtatcaaatgaacaggat 2943 Query: 262 ctgggatcaataggcggattatgttctagcttactgtttcgttatgtgtttacaatagca 321 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2942 ctgggatcaataggcggattatgttctagcttactgtttcgttatgtgtttacaatagca 2883 Query: 322 aagttcgttacataacaaaatgcttacaaaagttgctagttacactatgacagttttcaa 381 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2882 aagttcgttacataacaaaatgcttacaaaagttgctagttacactatgacagttttcaa 2823 Query: 382 ttggcaagtatgaatccttatcctcgttaagtatctgatttgtaattgttaattgttgct 441 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2822 ttggcaagtatgaatccttatcctcgttaagtatctgatttgtaattgttaattgttgct 2763 Query: 442 taagacgttagtataatatcagttttccccttt 474 ||||||||||||||||||||||||||||||||| Sbjct: 2762 taagacgttagtataatatcagttttccccttt 2730 >CG14995-RB feature: mRNA loc=3L:complement(4074964..4075748,4075826..4075919, 4076262..4076500,4078133..4078430,4078652..4078825, 4081406..4081471, 4081622..4081840);ID=FBan0014995;gene_id=FBgn0035497;gene _sym=CG14995;sym=CG14995;scaffold=AE003480;len=1875 Length = 1875 Score = 825 bits (416), Expect = 0.0 Identities = 444/453 (98%), Gaps = 2/453 (0%) Strand = Plus / Minus Query: 23 gcattttaggtaaatatattaaaattaaggtttagcgttatttgcttt-gcgtacaaata 81 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1787 gcattttaggtaaatatattaaaattaaggtttagcgttatttgcttttgcgtacaaata 1728 Query: 82 tttaacaaagtcatgagtatgatttcaactaatcttattaagaatctaggaagatacatt 141 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1727 tttaacaaagtcatgagtatgatttcaactaatcttattaagaatctaggaagatacatt 1668 Query: 142 gtgctccttcgccttgggcgacattagttcgctagtcgatcttctcgagttaagtacnnn 201 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1667 gtgctccttcgccttgggcgacattagttcgctagtcgatcttctcgagttaagtacaaa 1608 Query: 202 nnnnngggctagtttttgtggtctgtgcttgggattgattgggtatcaaatgaacaggat 261 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1607 aaaa-gggctagtttttgtggtctgtgcttgggattgattgggtatcaaatgaacaggat 1549 Query: 262 ctgggatcaataggcggattatgttctagcttactgtttcgttatgtgtttacaatagca 321 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1548 ctgggatcaataggcggattatgttctagcttactgtttcgttatgtgtttacaatagca 1489 Query: 322 aagttcgttacataacaaaatgcttacaaaagttgctagttacactatgacagttttcaa 381 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1488 aagttcgttacataacaaaatgcttacaaaagttgctagttacactatgacagttttcaa 1429 Query: 382 ttggcaagtatgaatccttatcctcgttaagtatctgatttgtaattgttaattgttgct 441 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1428 ttggcaagtatgaatccttatcctcgttaagtatctgatttgtaattgttaattgttgct 1369 Query: 442 taagacgttagtataatatcagttttccccttt 474 ||||||||||||||||||||||||||||||||| Sbjct: 1368 taagacgttagtataatatcagttttccccttt 1336 >CG14995-RA feature: mRNA loc=3L:complement(4074964..4075748,4075826..4075919, 4076262..4076500,4076598..4076693,4077530..4077604, 4077832..4077960,4078133..4078430,4078652..4078825, 4081406..4081471, 4082103..4083544);ID=FBan0014995;gene_id=FBgn0035497;gene _sym=CG14995;sym=CG14995;scaffold=AE003480;len=3398 Length = 3398 Score = 825 bits (416), Expect = 0.0 Identities = 444/453 (98%), Gaps = 2/453 (0%) Strand = Plus / Minus Query: 23 gcattttaggtaaatatattaaaattaaggtttagcgttatttgcttt-gcgtacaaata 81 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 3310 gcattttaggtaaatatattaaaattaaggtttagcgttatttgcttttgcgtacaaata 3251 Query: 82 tttaacaaagtcatgagtatgatttcaactaatcttattaagaatctaggaagatacatt 141 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3250 tttaacaaagtcatgagtatgatttcaactaatcttattaagaatctaggaagatacatt 3191 Query: 142 gtgctccttcgccttgggcgacattagttcgctagtcgatcttctcgagttaagtacnnn 201 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3190 gtgctccttcgccttgggcgacattagttcgctagtcgatcttctcgagttaagtacaaa 3131 Query: 202 nnnnngggctagtttttgtggtctgtgcttgggattgattgggtatcaaatgaacaggat 261 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3130 aaaa-gggctagtttttgtggtctgtgcttgggattgattgggtatcaaatgaacaggat 3072 Query: 262 ctgggatcaataggcggattatgttctagcttactgtttcgttatgtgtttacaatagca 321 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3071 ctgggatcaataggcggattatgttctagcttactgtttcgttatgtgtttacaatagca 3012 Query: 322 aagttcgttacataacaaaatgcttacaaaagttgctagttacactatgacagttttcaa 381 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3011 aagttcgttacataacaaaatgcttacaaaagttgctagttacactatgacagttttcaa 2952 Query: 382 ttggcaagtatgaatccttatcctcgttaagtatctgatttgtaattgttaattgttgct 441 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2951 ttggcaagtatgaatccttatcctcgttaagtatctgatttgtaattgttaattgttgct 2892 Query: 442 taagacgttagtataatatcagttttccccttt 474 ||||||||||||||||||||||||||||||||| Sbjct: 2891 taagacgttagtataatatcagttttccccttt 2859 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8686 Number of Sequences: 18737 Number of extensions: 8686 Number of successful extensions: 251 Number of sequences better than 1.0e-100: 4 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 239 Number of HSP's gapped (non-prelim): 8 length of query: 474 length of database: 41,270,998 effective HSP length: 17 effective length of query: 457 effective length of database: 40,952,469 effective search space: 18715278333 effective search space used: 18715278333 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945683|AI945683 bs15f05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs15f05 5', mRNA sequence. (469 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9415 Number of Sequences: 18737 Number of extensions: 9415 Number of successful extensions: 151 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 151 Number of HSP's gapped (non-prelim): 0 length of query: 469 length of database: 41,270,998 effective HSP length: 17 effective length of query: 452 effective length of database: 40,952,469 effective search space: 18510515988 effective search space used: 18510515988 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945689|AI945689 bs15f11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs15f11 5', mRNA sequence. (383 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 18,736 Number of Sequences: 18737 Number of extensions: 18736 Number of successful extensions: 3045 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3045 Number of HSP's gapped (non-prelim): 0 length of query: 383 length of database: 41,270,998 effective HSP length: 17 effective length of query: 366 effective length of database: 40,952,469 effective search space: 14988603654 effective search space used: 14988603654 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945697|AI945697 bs15g08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs15g08 5', mRNA sequence. (481 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8023 Number of Sequences: 18737 Number of extensions: 8023 Number of successful extensions: 166 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 166 Number of HSP's gapped (non-prelim): 0 length of query: 481 length of database: 41,270,998 effective HSP length: 17 effective length of query: 464 effective length of database: 40,952,469 effective search space: 19001945616 effective search space used: 19001945616 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945709|AI945709 bs15h09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs15h09 5', mRNA sequence. (478 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,691 Number of Sequences: 18737 Number of extensions: 10691 Number of successful extensions: 215 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 215 Number of HSP's gapped (non-prelim): 0 length of query: 478 length of database: 41,270,998 effective HSP length: 17 effective length of query: 461 effective length of database: 40,952,469 effective search space: 18879088209 effective search space used: 18879088209 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945712|AI945712 bs16a02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs16a02 5', mRNA sequence. (436 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Glycogenin-RB feature: mRNA loc=2R:join(16244038..16244209,16248... 412 e-115 >Glycogenin-RB feature: mRNA loc=2R:join(16244038..16244209,16248164..16248474, 16248561..16248850,16248912..16249092, 16252021..16253444);ID=FBan0009480;gene_id=FBgn0034603;ge ne_sym=Glycogenin;sym=CG9480;scaffold=AE003453;len=2378 Length = 2378 Score = 412 bits (208), Expect = e-115 Identities = 208/208 (100%) Strand = Plus / Plus Query: 8 cttctccaccctaaaatgaaaaccccaaacacgcacacaatcgtattttatcccccctcc 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1281 cttctccaccctaaaatgaaaaccccaaacacgcacacaatcgtattttatcccccctcc 1340 Query: 68 ctccccacctttgggaggcaggcgaactgttgccaatgtcaaggagccgccggtctaatt 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1341 ctccccacctttgggaggcaggcgaactgttgccaatgtcaaggagccgccggtctaatt 1400 Query: 128 gaaatttaaggtttggccaaaaaatgttgtcgaaacgaattcttcagagtgtcataaatg 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1401 gaaatttaaggtttggccaaaaaatgttgtcgaaacgaattcttcagagtgtcataaatg 1460 Query: 188 caatttttatttgccttccctgttacag 215 |||||||||||||||||||||||||||| Sbjct: 1461 caatttttatttgccttccctgttacag 1488 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9153 Number of Sequences: 18737 Number of extensions: 9153 Number of successful extensions: 785 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 782 Number of HSP's gapped (non-prelim): 3 length of query: 436 length of database: 41,270,998 effective HSP length: 17 effective length of query: 419 effective length of database: 40,952,469 effective search space: 17159084511 effective search space used: 17159084511 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945721|AI945721 bs16a12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs16a12 5', mRNA sequence. (405 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG6758-RA feature: mRNA loc=2R:join(17218457..17218868,17218927.... 773 0.0 >CG6758-RA feature: mRNA loc=2R:join(17218457..17218868,17218927..17220308, 17220366..17220979);ID=FBan0006758;gene_id=FBgn0034704;ge ne_sym=CG6758;sym=CG6758;scaffold=AE003456;len=2408 Length = 2408 Score = 773 bits (390), Expect = 0.0 Identities = 396/398 (99%) Strand = Plus / Minus Query: 8 tctttgcaaacgctgtgcggcatccacatcgccgtcggcgggagatggcggagcatttgg 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1728 tctttgcaaacgctgtgcggcatccacatcgccgtcggcgggagatggcggagcatttgg 1669 Query: 68 tcgcactggcggggatggaggagaagcagctgcagccgcagctggcggggcatgcagatc 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1668 tcgcactggcggggatggaggagaagcagctgcagccgcagctggcggggcatgcagatc 1609 Query: 128 actcaatcttcccgagcgcggttgataattattgttattattgttcacattgctgttgtg 187 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1608 actcaatcttcccgagcgcggttggtaattattgttattattgttcacattgctgttgtg 1549 Query: 188 caggaattgctgcgcttgctgcatgtgttgattaagaattgctctccggttagccaaata 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1548 caggaattgctgcgcttgctgcatgtgttgattaagaattgctctccggttagccaaata 1489 Query: 248 ctgttcttgaggacccagtgcagctgctgcacctcccactccaggacggatgtttcctcc 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1488 ctgttcttgaggacccagtgcagctgctgcacctcccactccaggacggatgtttcctcc 1429 Query: 308 gcgattttggccaggtccacctaatccacctccacctagtcgacgatccggaactggtat 367 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 1428 gcgattttggccaggtccacccaatccacctccacctagtcgacgatccggaactggtat 1369 Query: 368 ccggtatccccttggaggtacattttgaagaggattcg 405 |||||||||||||||||||||||||||||||||||||| Sbjct: 1368 ccggtatccccttggaggtacattttgaagaggattcg 1331 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,134 Number of Sequences: 18737 Number of extensions: 16134 Number of successful extensions: 1852 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1851 Number of HSP's gapped (non-prelim): 1 length of query: 405 length of database: 41,270,998 effective HSP length: 17 effective length of query: 388 effective length of database: 40,952,469 effective search space: 15889557972 effective search space used: 15889557972 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945725|AI945725 bs16b05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs16b05 5', mRNA sequence. (431 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32332-RE feature: mRNA loc=3L:join(1232641..1233861,1233933..1... 442 e-123 CG32332-RD feature: mRNA loc=3L:join(1232641..1233861,1233933..1... 442 e-123 CG32332-RC feature: mRNA loc=3L:join(1232641..1233861,1233933..1... 442 e-123 CG32332-RB feature: mRNA loc=3L:join(1232641..1233861,1233933..1... 442 e-123 CG32332-RA feature: mRNA loc=3L:join(1234482..1234622,1234705..1... 442 e-123 >CG32332-RE feature: mRNA loc=3L:join(1232641..1233861,1233933..1234352, 1234705..1235673, 1236117..1236617);ID=FBan0032332;gene_id=FBgn0052332;gene _sym=CG32332;sym=CG32332;scaffold=AE003471;len=3111 Length = 3111 Score = 442 bits (223), Expect = e-123 Identities = 223/223 (100%) Strand = Plus / Minus Query: 43 cttaattttaattcaatcaaaagcatacatttacgtaactagtcgaaaaagtgagtgttc 102 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3094 cttaattttaattcaatcaaaagcatacatttacgtaactagtcgaaaaagtgagtgttc 3035 Query: 103 gtgcatcttactggacgggttaatatgaatgggttagtaccagagccaaatttcaataat 162 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3034 gtgcatcttactggacgggttaatatgaatgggttagtaccagagccaaatttcaataat 2975 Query: 163 tgctgctgtgaattttcaaagagtcgcttccaaaatgccaaaggatgtgttccgaaaggg 222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2974 tgctgctgtgaattttcaaagagtcgcttccaaaatgccaaaggatgtgttccgaaaggg 2915 Query: 223 taagcgtcaagtccggtcgatgggaatgggatccgcctacgga 265 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2914 taagcgtcaagtccggtcgatgggaatgggatccgcctacgga 2872 >CG32332-RD feature: mRNA loc=3L:join(1232641..1233861,1233933..1234352, 1234705..1235673, 1236117..1236617);ID=FBan0032332;gene_id=FBgn0052332;gene _sym=CG32332;sym=CG32332;scaffold=AE003471;len=3111 Length = 3111 Score = 442 bits (223), Expect = e-123 Identities = 223/223 (100%) Strand = Plus / Minus Query: 43 cttaattttaattcaatcaaaagcatacatttacgtaactagtcgaaaaagtgagtgttc 102 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3094 cttaattttaattcaatcaaaagcatacatttacgtaactagtcgaaaaagtgagtgttc 3035 Query: 103 gtgcatcttactggacgggttaatatgaatgggttagtaccagagccaaatttcaataat 162 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3034 gtgcatcttactggacgggttaatatgaatgggttagtaccagagccaaatttcaataat 2975 Query: 163 tgctgctgtgaattttcaaagagtcgcttccaaaatgccaaaggatgtgttccgaaaggg 222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2974 tgctgctgtgaattttcaaagagtcgcttccaaaatgccaaaggatgtgttccgaaaggg 2915 Query: 223 taagcgtcaagtccggtcgatgggaatgggatccgcctacgga 265 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2914 taagcgtcaagtccggtcgatgggaatgggatccgcctacgga 2872 >CG32332-RC feature: mRNA loc=3L:join(1232641..1233861,1233933..1234352, 1234705..1234953,1235027..1235673, 1236117..1236617);ID=FBan0032332;gene_id=FBgn0052332;gene _sym=CG32332;sym=CG32332;scaffold=AE003471;len=3038 Length = 3038 Score = 442 bits (223), Expect = e-123 Identities = 223/223 (100%) Strand = Plus / Minus Query: 43 cttaattttaattcaatcaaaagcatacatttacgtaactagtcgaaaaagtgagtgttc 102 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3021 cttaattttaattcaatcaaaagcatacatttacgtaactagtcgaaaaagtgagtgttc 2962 Query: 103 gtgcatcttactggacgggttaatatgaatgggttagtaccagagccaaatttcaataat 162 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2961 gtgcatcttactggacgggttaatatgaatgggttagtaccagagccaaatttcaataat 2902 Query: 163 tgctgctgtgaattttcaaagagtcgcttccaaaatgccaaaggatgtgttccgaaaggg 222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2901 tgctgctgtgaattttcaaagagtcgcttccaaaatgccaaaggatgtgttccgaaaggg 2842 Query: 223 taagcgtcaagtccggtcgatgggaatgggatccgcctacgga 265 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2841 taagcgtcaagtccggtcgatgggaatgggatccgcctacgga 2799 >CG32332-RB feature: mRNA loc=3L:join(1232641..1233861,1233933..1234352, 1234705..1234953,1235027..1235673, 1236117..1236617);ID=FBan0032332;gene_id=FBgn0052332;gene _sym=CG32332;sym=CG32332;scaffold=AE003471;len=3038 Length = 3038 Score = 442 bits (223), Expect = e-123 Identities = 223/223 (100%) Strand = Plus / Minus Query: 43 cttaattttaattcaatcaaaagcatacatttacgtaactagtcgaaaaagtgagtgttc 102 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3021 cttaattttaattcaatcaaaagcatacatttacgtaactagtcgaaaaagtgagtgttc 2962 Query: 103 gtgcatcttactggacgggttaatatgaatgggttagtaccagagccaaatttcaataat 162 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2961 gtgcatcttactggacgggttaatatgaatgggttagtaccagagccaaatttcaataat 2902 Query: 163 tgctgctgtgaattttcaaagagtcgcttccaaaatgccaaaggatgtgttccgaaaggg 222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2901 tgctgctgtgaattttcaaagagtcgcttccaaaatgccaaaggatgtgttccgaaaggg 2842 Query: 223 taagcgtcaagtccggtcgatgggaatgggatccgcctacgga 265 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2841 taagcgtcaagtccggtcgatgggaatgggatccgcctacgga 2799 >CG32332-RA feature: mRNA loc=3L:join(1234482..1234622,1234705..1234953, 1235027..1235673, 1236117..1236617);ID=FBan0032332;gene_id=FBgn0052332;gene _sym=CG32332;sym=CG32332;scaffold=AE003471;len=1538 Length = 1538 Score = 442 bits (223), Expect = e-123 Identities = 223/223 (100%) Strand = Plus / Minus Query: 43 cttaattttaattcaatcaaaagcatacatttacgtaactagtcgaaaaagtgagtgttc 102 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1521 cttaattttaattcaatcaaaagcatacatttacgtaactagtcgaaaaagtgagtgttc 1462 Query: 103 gtgcatcttactggacgggttaatatgaatgggttagtaccagagccaaatttcaataat 162 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1461 gtgcatcttactggacgggttaatatgaatgggttagtaccagagccaaatttcaataat 1402 Query: 163 tgctgctgtgaattttcaaagagtcgcttccaaaatgccaaaggatgtgttccgaaaggg 222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1401 tgctgctgtgaattttcaaagagtcgcttccaaaatgccaaaggatgtgttccgaaaggg 1342 Query: 223 taagcgtcaagtccggtcgatgggaatgggatccgcctacgga 265 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1341 taagcgtcaagtccggtcgatgggaatgggatccgcctacgga 1299 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6657 Number of Sequences: 18737 Number of extensions: 6657 Number of successful extensions: 457 Number of sequences better than 1.0e-100: 5 Number of HSP's better than 0.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 447 Number of HSP's gapped (non-prelim): 10 length of query: 431 length of database: 41,270,998 effective HSP length: 17 effective length of query: 414 effective length of database: 40,952,469 effective search space: 16954322166 effective search space used: 16954322166 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945740|AI945740 bs16c09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs16c09 5', mRNA sequence. (158 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1637 Number of Sequences: 18737 Number of extensions: 1637 Number of successful extensions: 159 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 159 Number of HSP's gapped (non-prelim): 0 length of query: 158 length of database: 41,270,998 effective HSP length: 16 effective length of query: 142 effective length of database: 40,971,206 effective search space: 5817911252 effective search space used: 5817911252 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945756|AI945756 bs16e05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs16e05 5', mRNA sequence. (434 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9356 Number of Sequences: 18737 Number of extensions: 9356 Number of successful extensions: 744 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 744 Number of HSP's gapped (non-prelim): 0 length of query: 434 length of database: 41,270,998 effective HSP length: 17 effective length of query: 417 effective length of database: 40,952,469 effective search space: 17077179573 effective search space used: 17077179573 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945759|AI945759 bs16e09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs16e09 5', mRNA sequence. (407 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,725 Number of Sequences: 18737 Number of extensions: 15725 Number of successful extensions: 3562 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3562 Number of HSP's gapped (non-prelim): 0 length of query: 407 length of database: 41,270,998 effective HSP length: 17 effective length of query: 390 effective length of database: 40,952,469 effective search space: 15971462910 effective search space used: 15971462910 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945764|AI945764 bs16f03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs16f03 5', mRNA sequence. (438 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8426 Number of Sequences: 18737 Number of extensions: 8426 Number of successful extensions: 651 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 651 Number of HSP's gapped (non-prelim): 0 length of query: 438 length of database: 41,270,998 effective HSP length: 17 effective length of query: 421 effective length of database: 40,952,469 effective search space: 17240989449 effective search space used: 17240989449 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945765|AI945765 bs16f04.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs16f04 5', mRNA sequence. (435 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,121 Number of Sequences: 18737 Number of extensions: 10121 Number of successful extensions: 859 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 859 Number of HSP's gapped (non-prelim): 0 length of query: 435 length of database: 41,270,998 effective HSP length: 17 effective length of query: 418 effective length of database: 40,952,469 effective search space: 17118132042 effective search space used: 17118132042 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945773|AI945773 bs16f12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs16f12 5', mRNA sequence. (394 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG30430-RA feature: mRNA loc=2R:join(20173002..20173106,20173163... 638 0.0 >CG30430-RA feature: mRNA loc=2R:join(20173002..20173106, 20173163..20173482);ID=FBan0030430;gene_id=FBgn0050430;g ene_sym=CG30430;sym=CG30430;scaffold=AE003466;len=425 Length = 425 Score = 638 bits (322), Expect = 0.0 Identities = 328/330 (99%) Strand = Plus / Minus Query: 45 gaaagtcaaacacctttattacgacttgatcttgttttcaagacgaataggccatgttaa 104 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 382 gaaagtcaaacacctttattacgacttgatcttgttttcaagacgaataggccatgttaa 323 Query: 105 taaataattgtcttcaaaaagttttggttaccgagtaccaaaattaacaagacggtccgc 164 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 322 taaataattgtcttcaaaaagttttggttaccgagtaccaaaattaacaagacggtccgc 263 Query: 165 agctgctgcagcatccgcccccgcagcaaggtccacatggtccactatagaatccgcatc 224 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 262 agctgctgcagcatccgcccccgcagcaaggtccacatggtccactatagaatccgcatc 203 Query: 225 gtggtccaaaacaacggccactaaagcaggggctacagcaagggtagtagcaagttccgc 284 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 202 gtggtccaaaacaacggccactaaagcaggggctacagcaagggtagtagcaagttccac 143 Query: 285 agcagggcccgcaacacatcacgaatttatgtgagttttaaaaaacaaatcttcaaaaac 344 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 142 agcagggcccgcaacacatcacgaatttatgtgagttttaaaaaacaaatctccaaaaac 83 Query: 345 tttgacaattaacaataaattttgatgttg 374 |||||||||||||||||||||||||||||| Sbjct: 82 tttgacaattaacaataaattttgatgttg 53 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,995 Number of Sequences: 18737 Number of extensions: 10995 Number of successful extensions: 1023 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1022 Number of HSP's gapped (non-prelim): 1 length of query: 394 length of database: 41,270,998 effective HSP length: 17 effective length of query: 377 effective length of database: 40,952,469 effective search space: 15439080813 effective search space used: 15439080813 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945780|AI945780 bs16g08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs16g08 5', mRNA sequence. (408 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Jheh1-RA feature: mRNA loc=2R:complement(13917142..13917984,1391... 529 e-150 >Jheh1-RA feature: mRNA loc=2R:complement(13917142..13917984,13918043..13918253, 13918308..13918507, 13918564..13918829);ID=FBan0015101;gene_id=FBgn0010053;g ene_sym=Jheh1;sym=CG15101;scaffold=AE003798;len=1520 Length = 1520 Score = 529 bits (267), Expect = e-150 Identities = 267/267 (100%) Strand = Plus / Minus Query: 8 gaaatcttcaaagccagagggcacaaacaaactgggccaaaattcggccactaaaccctt 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 941 gaaatcttcaaagccagagggcacaaacaaactgggccaaaattcggccactaaaccctt 882 Query: 68 agccagcgacttcggactcaaattgttgcacatgttcgagtggtagcccagcacgttttc 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 881 agccagcgacttcggactcaaattgttgcacatgttcgagtggtagcccagcacgttttc 822 Query: 128 cggatacaaggtggcaatgttgctgccaataatgctgccccagtctccaccctggataaa 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 821 cggatacaaggtggcaatgttgctgccaataatgctgccccagtctccaccctggataaa 762 Query: 188 gaatttgttgtatcccaaacgcagcataagattcctcatcatcaccgccacttgagcggg 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 761 gaatttgttgtatcccaaacgcagcataagattcctcatcatcaccgccacttgagcggg 702 Query: 248 acccagtccttttctggaggtgccctg 274 ||||||||||||||||||||||||||| Sbjct: 701 acccagtccttttctggaggtgccctg 675 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9160 Number of Sequences: 18737 Number of extensions: 9160 Number of successful extensions: 720 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 718 Number of HSP's gapped (non-prelim): 2 length of query: 408 length of database: 41,270,998 effective HSP length: 17 effective length of query: 391 effective length of database: 40,952,469 effective search space: 16012415379 effective search space used: 16012415379 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945785|AI945785 bs16h02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs16h02 5', mRNA sequence. (307 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG5089-RA feature: mRNA loc=2R:11662473..11664140;ID=FBan0005089... 414 e-115 >CG5089-RA feature: mRNA loc=2R:11662473..11664140;ID=FBan0005089;gene_id=FBgn0034 144;gene_sym=CG5089;sym=CG5089;scaffold=AE003806;len=1668 Length = 1668 Score = 414 bits (209), Expect = e-115 Identities = 209/209 (100%) Strand = Plus / Minus Query: 46 atattaaattttactataatatcccagaactctgccaggagctcagcaagtattcatttt 105 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1649 atattaaattttactataatatcccagaactctgccaggagctcagcaagtattcatttt 1590 Query: 106 caaatattaactctggataaaaaggcaattcacaacgctatagtaaaatgagctccattt 165 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1589 caaatattaactctggataaaaaggcaattcacaacgctatagtaaaatgagctccattt 1530 Query: 166 atgagctgctggcccttaagaagttgcgccaggattcgccattagatttgcgatgagatc 225 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1529 atgagctgctggcccttaagaagttgcgccaggattcgccattagatttgcgatgagatc 1470 Query: 226 ccatgtaggcactgggtccggcgatggcg 254 ||||||||||||||||||||||||||||| Sbjct: 1469 ccatgtaggcactgggtccggcgatggcg 1441 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6083 Number of Sequences: 18737 Number of extensions: 6083 Number of successful extensions: 396 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 394 Number of HSP's gapped (non-prelim): 2 length of query: 307 length of database: 41,270,998 effective HSP length: 16 effective length of query: 291 effective length of database: 40,971,206 effective search space: 11922620946 effective search space used: 11922620946 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945816|AI945816 bs17b11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs17b11 5', mRNA sequence. (500 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8869 Number of Sequences: 18737 Number of extensions: 8869 Number of successful extensions: 187 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 187 Number of HSP's gapped (non-prelim): 0 length of query: 500 length of database: 41,270,998 effective HSP length: 17 effective length of query: 483 effective length of database: 40,952,469 effective search space: 19780042527 effective search space used: 19780042527 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945823|AI945823 bs17c06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs17c06 5', mRNA sequence. (309 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5038 Number of Sequences: 18737 Number of extensions: 5038 Number of successful extensions: 348 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 348 Number of HSP's gapped (non-prelim): 0 length of query: 309 length of database: 41,270,998 effective HSP length: 16 effective length of query: 293 effective length of database: 40,971,206 effective search space: 12004563358 effective search space used: 12004563358 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945829|AI945829 bs17c12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs17c12 5', mRNA sequence. (93 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1430 Number of Sequences: 18737 Number of extensions: 1430 Number of successful extensions: 382 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 382 Number of HSP's gapped (non-prelim): 0 length of query: 93 length of database: 41,270,998 effective HSP length: 16 effective length of query: 77 effective length of database: 40,971,206 effective search space: 3154782862 effective search space used: 3154782862 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945831|AI945831 bs17d02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs17d02 5', mRNA sequence. (392 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6106 Number of Sequences: 18737 Number of extensions: 6106 Number of successful extensions: 463 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 463 Number of HSP's gapped (non-prelim): 0 length of query: 392 length of database: 41,270,998 effective HSP length: 17 effective length of query: 375 effective length of database: 40,952,469 effective search space: 15357175875 effective search space used: 15357175875 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945833|AI945833 bs17d05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs17d05 5', mRNA sequence. (523 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value chb-RC feature: mRNA loc=3L:join(21095137..21095218,21095373..21... 1027 0.0 chb-RB feature: mRNA loc=3L:join(21090129..21090321,21095373..21... 1027 0.0 chb-RA feature: mRNA loc=3L:join(21093076..21093804,21095373..21... 1027 0.0 >chb-RC feature: mRNA loc=3L:join(21095137..21095218, 21095373..21100554);ID=FBan0032435;gene_id=FBgn0021760;ge ne_sym=chb;sym=CG32435;scaffold=AE003593;len=5264 Length = 5264 Score = 1027 bits (518), Expect = 0.0 Identities = 518/518 (100%) Strand = Plus / Plus Query: 6 aggtcaggtggtggcttgatgaaacgcagtatgtactctacaggtgcggggtctcgacgt 65 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2252 aggtcaggtggtggcttgatgaaacgcagtatgtactctacaggtgcggggtctcgacgt 2311 Query: 66 acgcccgagaggaacaacccagtaagaccatcggcggcggcacgactgctggcgcaatcc 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2312 acgcccgagaggaacaacccagtaagaccatcggcggcggcacgactgctggcgcaatcc 2371 Query: 126 cgtgaagcagaacatacattaggcgtcggagatgatggacagccagactatgtttccggg 185 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2372 cgtgaagcagaacatacattaggcgtcggagatgatggacagccagactatgtttccggg 2431 Query: 186 gactacatgcgcagcggcggaatgcggatgggtaggaagctcatgggacgtgatgagtct 245 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2432 gactacatgcgcagcggcggaatgcggatgggtaggaagctcatgggacgtgatgagtct 2491 Query: 246 gatgacatcgactccgaggccagttctgtgtgttcagaacgatctttcgactccagctac 305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2492 gatgacatcgactccgaggccagttctgtgtgttcagaacgatctttcgactccagctac 2551 Query: 306 actagaggtaataaatcgaactactcacttagcgggagccacacccgcttggactggagc 365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2552 actagaggtaataaatcgaactactcacttagcgggagccacacccgcttggactggagc 2611 Query: 366 acgcagcgggcgccatttgacgacatcgagacgattattcagttctgcgcatcgacgcat 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2612 acgcagcgggcgccatttgacgacatcgagacgattattcagttctgcgcatcgacgcat 2671 Query: 426 tggtctgaaaggaaggatggcctgatcagcctcacacagtatctggccgatggaaaggag 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2672 tggtctgaaaggaaggatggcctgatcagcctcacacagtatctggccgatggaaaggag 2731 Query: 486 ctcactcagcagcaacttaaatgcgttctggacatgtt 523 |||||||||||||||||||||||||||||||||||||| Sbjct: 2732 ctcactcagcagcaacttaaatgcgttctggacatgtt 2769 >chb-RB feature: mRNA loc=3L:join(21090129..21090321, 21095373..21100554);ID=FBan0032435;gene_id=FBgn0021760;ge ne_sym=chb;sym=CG32435;scaffold=AE003593;len=5375 Length = 5375 Score = 1027 bits (518), Expect = 0.0 Identities = 518/518 (100%) Strand = Plus / Plus Query: 6 aggtcaggtggtggcttgatgaaacgcagtatgtactctacaggtgcggggtctcgacgt 65 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2363 aggtcaggtggtggcttgatgaaacgcagtatgtactctacaggtgcggggtctcgacgt 2422 Query: 66 acgcccgagaggaacaacccagtaagaccatcggcggcggcacgactgctggcgcaatcc 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2423 acgcccgagaggaacaacccagtaagaccatcggcggcggcacgactgctggcgcaatcc 2482 Query: 126 cgtgaagcagaacatacattaggcgtcggagatgatggacagccagactatgtttccggg 185 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2483 cgtgaagcagaacatacattaggcgtcggagatgatggacagccagactatgtttccggg 2542 Query: 186 gactacatgcgcagcggcggaatgcggatgggtaggaagctcatgggacgtgatgagtct 245 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2543 gactacatgcgcagcggcggaatgcggatgggtaggaagctcatgggacgtgatgagtct 2602 Query: 246 gatgacatcgactccgaggccagttctgtgtgttcagaacgatctttcgactccagctac 305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2603 gatgacatcgactccgaggccagttctgtgtgttcagaacgatctttcgactccagctac 2662 Query: 306 actagaggtaataaatcgaactactcacttagcgggagccacacccgcttggactggagc 365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2663 actagaggtaataaatcgaactactcacttagcgggagccacacccgcttggactggagc 2722 Query: 366 acgcagcgggcgccatttgacgacatcgagacgattattcagttctgcgcatcgacgcat 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2723 acgcagcgggcgccatttgacgacatcgagacgattattcagttctgcgcatcgacgcat 2782 Query: 426 tggtctgaaaggaaggatggcctgatcagcctcacacagtatctggccgatggaaaggag 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2783 tggtctgaaaggaaggatggcctgatcagcctcacacagtatctggccgatggaaaggag 2842 Query: 486 ctcactcagcagcaacttaaatgcgttctggacatgtt 523 |||||||||||||||||||||||||||||||||||||| Sbjct: 2843 ctcactcagcagcaacttaaatgcgttctggacatgtt 2880 >chb-RA feature: mRNA loc=3L:join(21093076..21093804, 21095373..21100554);ID=FBan0032435;gene_id=FBgn0021760;ge ne_sym=chb;sym=CG32435;scaffold=AE003593;len=5911 Length = 5911 Score = 1027 bits (518), Expect = 0.0 Identities = 518/518 (100%) Strand = Plus / Plus Query: 6 aggtcaggtggtggcttgatgaaacgcagtatgtactctacaggtgcggggtctcgacgt 65 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2899 aggtcaggtggtggcttgatgaaacgcagtatgtactctacaggtgcggggtctcgacgt 2958 Query: 66 acgcccgagaggaacaacccagtaagaccatcggcggcggcacgactgctggcgcaatcc 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2959 acgcccgagaggaacaacccagtaagaccatcggcggcggcacgactgctggcgcaatcc 3018 Query: 126 cgtgaagcagaacatacattaggcgtcggagatgatggacagccagactatgtttccggg 185 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3019 cgtgaagcagaacatacattaggcgtcggagatgatggacagccagactatgtttccggg 3078 Query: 186 gactacatgcgcagcggcggaatgcggatgggtaggaagctcatgggacgtgatgagtct 245 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3079 gactacatgcgcagcggcggaatgcggatgggtaggaagctcatgggacgtgatgagtct 3138 Query: 246 gatgacatcgactccgaggccagttctgtgtgttcagaacgatctttcgactccagctac 305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3139 gatgacatcgactccgaggccagttctgtgtgttcagaacgatctttcgactccagctac 3198 Query: 306 actagaggtaataaatcgaactactcacttagcgggagccacacccgcttggactggagc 365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3199 actagaggtaataaatcgaactactcacttagcgggagccacacccgcttggactggagc 3258 Query: 366 acgcagcgggcgccatttgacgacatcgagacgattattcagttctgcgcatcgacgcat 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3259 acgcagcgggcgccatttgacgacatcgagacgattattcagttctgcgcatcgacgcat 3318 Query: 426 tggtctgaaaggaaggatggcctgatcagcctcacacagtatctggccgatggaaaggag 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3319 tggtctgaaaggaaggatggcctgatcagcctcacacagtatctggccgatggaaaggag 3378 Query: 486 ctcactcagcagcaacttaaatgcgttctggacatgtt 523 |||||||||||||||||||||||||||||||||||||| Sbjct: 3379 ctcactcagcagcaacttaaatgcgttctggacatgtt 3416 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,801 Number of Sequences: 18737 Number of extensions: 11801 Number of successful extensions: 245 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 242 Number of HSP's gapped (non-prelim): 3 length of query: 523 length of database: 41,270,998 effective HSP length: 17 effective length of query: 506 effective length of database: 40,952,469 effective search space: 20721949314 effective search space used: 20721949314 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945856|AI945856 bs17f05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs17f05 5', mRNA sequence. (524 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value aret-RC feature: mRNA loc=2L:join(12259807..12260218,12260462..1... 930 0.0 aret-RB feature: mRNA loc=2L:join(12194714..12195001,12229739..1... 930 0.0 aret-RA feature: mRNA loc=2L:join(12259807..12260218,12260462..1... 930 0.0 >aret-RC feature: mRNA loc=2L:join(12259807..12260218,12260462..12260955, 12267708..12267790,12271385..12271433,12287439..12287620, 12287685..12287982,12288059..12288265,12289232..12289267, 12293317..12293466,12299553..12299964,12301247..12301336, 12301397..12301667);ID=FBan0031762;gene_id=FBgn0000114;ge ne_sym=aret;sym=CG31762;scaffold=AE003635;len=2684 Length = 2684 Score = 930 bits (469), Expect = 0.0 Identities = 485/493 (98%) Strand = Plus / Minus Query: 32 agtatttttataaattttctttgttaaaattagtatgctttacaagcttaaaaaatggct 91 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2679 agtatttttataaattttctttgttaaaattagtatgctttacaagcttaaaaaatggct 2620 Query: 92 ttcttggctatcatacaacatgattgcatattaggttttatacagattttccaatannnn 151 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2619 ttcttggctatcatacaacatgattgcatattaggttttatacagattttccaatatttt 2560 Query: 152 nnnnggaattcaaatttacagtttttggaaatttttatgcgacagcagtgggataggcaa 211 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2559 ttttggaattcaaatttacagtttttggaaatttttatgcgacagcagtgggataggcaa 2500 Query: 212 tctttagtaggattctcgagactcaagcggatattatttacatatttcagggaccaatgc 271 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2499 tctttagtaggattctcgagactcaagcggatattatttacatatttcagggaccaatgc 2440 Query: 272 gtcttgtaagaacgatttgcataaaactctcaactggcggcttgcatcagctaccacttg 331 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2439 gtcttgtaagaacgatttgcataaaactctcaactggcggcttgcatcagctaccacttg 2380 Query: 332 acatcgcatttccaaaaatgaaataaatggcgaaactttgcaaagaacattaccataacg 391 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2379 acatcgcatttccaaaaatgaaataaatggcgaaactttgcaaagaacattaccataacg 2320 Query: 392 ttggcattcgcatcatcgtttaaatcttgcaacgcgctctacacgggcaactcttcattc 451 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2319 ttggcattcgcatcatcgtttaaatcttgcaacgcgctctacacgggcaactcttcattc 2260 Query: 452 attgactactccatatttcacaaatctcagtgttcctctactcgatgtgtccgtttaacc 511 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2259 attgactactccatatttcacaaatctcagtgttcctctactcgatgtgtccgtttaacc 2200 Query: 512 ttgccgccgatgg 524 ||||||||||||| Sbjct: 2199 ttgccgccgatgg 2187 >aret-RB feature: mRNA loc=2L:join(12194714..12195001,12229739..12230651, 12260462..12260955,12267708..12267790,12271385..12271433, 12287439..12287620,12287685..12287982,12288059..12288265, 12293317..12293466,12299553..12299964,12301247..12301336, 12301397..12301672);ID=FBan0031762;gene_id=FBgn0000114;ge ne_sym=aret;sym=CG31762;scaffold=AE003635;len=3442 Length = 3442 Score = 930 bits (469), Expect = 0.0 Identities = 485/493 (98%) Strand = Plus / Minus Query: 32 agtatttttataaattttctttgttaaaattagtatgctttacaagcttaaaaaatggct 91 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3432 agtatttttataaattttctttgttaaaattagtatgctttacaagcttaaaaaatggct 3373 Query: 92 ttcttggctatcatacaacatgattgcatattaggttttatacagattttccaatannnn 151 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3372 ttcttggctatcatacaacatgattgcatattaggttttatacagattttccaatatttt 3313 Query: 152 nnnnggaattcaaatttacagtttttggaaatttttatgcgacagcagtgggataggcaa 211 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3312 ttttggaattcaaatttacagtttttggaaatttttatgcgacagcagtgggataggcaa 3253 Query: 212 tctttagtaggattctcgagactcaagcggatattatttacatatttcagggaccaatgc 271 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3252 tctttagtaggattctcgagactcaagcggatattatttacatatttcagggaccaatgc 3193 Query: 272 gtcttgtaagaacgatttgcataaaactctcaactggcggcttgcatcagctaccacttg 331 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3192 gtcttgtaagaacgatttgcataaaactctcaactggcggcttgcatcagctaccacttg 3133 Query: 332 acatcgcatttccaaaaatgaaataaatggcgaaactttgcaaagaacattaccataacg 391 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3132 acatcgcatttccaaaaatgaaataaatggcgaaactttgcaaagaacattaccataacg 3073 Query: 392 ttggcattcgcatcatcgtttaaatcttgcaacgcgctctacacgggcaactcttcattc 451 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3072 ttggcattcgcatcatcgtttaaatcttgcaacgcgctctacacgggcaactcttcattc 3013 Query: 452 attgactactccatatttcacaaatctcagtgttcctctactcgatgtgtccgtttaacc 511 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3012 attgactactccatatttcacaaatctcagtgttcctctactcgatgtgtccgtttaacc 2953 Query: 512 ttgccgccgatgg 524 ||||||||||||| Sbjct: 2952 ttgccgccgatgg 2940 >aret-RA feature: mRNA loc=2L:join(12259807..12260218,12260462..12260955, 12267708..12267790,12271385..12271433,12287439..12287620, 12287685..12287982,12288059..12288265,12293317..12293466, 12299553..12299964,12301247..12301336, 12301397..12301667);ID=FBan0031762;gene_id=FBgn0000114;ge ne_sym=aret;sym=CG31762;scaffold=AE003635;len=2648 Length = 2648 Score = 930 bits (469), Expect = 0.0 Identities = 485/493 (98%) Strand = Plus / Minus Query: 32 agtatttttataaattttctttgttaaaattagtatgctttacaagcttaaaaaatggct 91 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2643 agtatttttataaattttctttgttaaaattagtatgctttacaagcttaaaaaatggct 2584 Query: 92 ttcttggctatcatacaacatgattgcatattaggttttatacagattttccaatannnn 151 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2583 ttcttggctatcatacaacatgattgcatattaggttttatacagattttccaatatttt 2524 Query: 152 nnnnggaattcaaatttacagtttttggaaatttttatgcgacagcagtgggataggcaa 211 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2523 ttttggaattcaaatttacagtttttggaaatttttatgcgacagcagtgggataggcaa 2464 Query: 212 tctttagtaggattctcgagactcaagcggatattatttacatatttcagggaccaatgc 271 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2463 tctttagtaggattctcgagactcaagcggatattatttacatatttcagggaccaatgc 2404 Query: 272 gtcttgtaagaacgatttgcataaaactctcaactggcggcttgcatcagctaccacttg 331 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2403 gtcttgtaagaacgatttgcataaaactctcaactggcggcttgcatcagctaccacttg 2344 Query: 332 acatcgcatttccaaaaatgaaataaatggcgaaactttgcaaagaacattaccataacg 391 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2343 acatcgcatttccaaaaatgaaataaatggcgaaactttgcaaagaacattaccataacg 2284 Query: 392 ttggcattcgcatcatcgtttaaatcttgcaacgcgctctacacgggcaactcttcattc 451 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2283 ttggcattcgcatcatcgtttaaatcttgcaacgcgctctacacgggcaactcttcattc 2224 Query: 452 attgactactccatatttcacaaatctcagtgttcctctactcgatgtgtccgtttaacc 511 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2223 attgactactccatatttcacaaatctcagtgttcctctactcgatgtgtccgtttaacc 2164 Query: 512 ttgccgccgatgg 524 ||||||||||||| Sbjct: 2163 ttgccgccgatgg 2151 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,209 Number of Sequences: 18737 Number of extensions: 10209 Number of successful extensions: 246 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 240 Number of HSP's gapped (non-prelim): 6 length of query: 524 length of database: 41,270,998 effective HSP length: 17 effective length of query: 507 effective length of database: 40,952,469 effective search space: 20762901783 effective search space used: 20762901783 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945857|AI945857 bs17f06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs17f06 5', mRNA sequence. (401 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG14995-RD feature: mRNA loc=3L:complement(4074964..4075748,4075... 672 0.0 CG14995-RC feature: mRNA loc=3L:complement(4074964..4075748,4075... 672 0.0 CG14995-RB feature: mRNA loc=3L:complement(4074964..4075748,4075... 672 0.0 CG14995-RA feature: mRNA loc=3L:complement(4074964..4075748,4075... 672 0.0 >CG14995-RD feature: mRNA loc=3L:complement(4074964..4075748,4075826..4075919, 4076262..4076500,4078133..4078430,4078652..4078825, 4081406..4081471, 4082103..4083544);ID=FBan0014995;gene_id=FBgn0035497;gene _sym=CG14995;sym=CG14995;scaffold=AE003480;len=3098 Length = 3098 Score = 672 bits (339), Expect = 0.0 Identities = 367/376 (97%), Gaps = 2/376 (0%) Strand = Plus / Minus Query: 27 gcattttaggtaaatatattaaaattaaggtttagcgttatttgcttt-gcgtacaaata 85 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 3010 gcattttaggtaaatatattaaaattaaggtttagcgttatttgcttttgcgtacaaata 2951 Query: 86 tttaacaaagtcatgagtatgatttcaactaatcttattaagaatctaggaagatacatt 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2950 tttaacaaagtcatgagtatgatttcaactaatcttattaagaatctaggaagatacatt 2891 Query: 146 gtgctccttcgccttgggcgacattagttcgctagtcgatcttctcgagttaagtacnnn 205 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2890 gtgctccttcgccttgggcgacattagttcgctagtcgatcttctcgagttaagtacaaa 2831 Query: 206 nnnnngggctagtttttgtggtctgtgcttgggattgattgggtatcaaatgaacaggat 265 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2830 aaaa-gggctagtttttgtggtctgtgcttgggattgattgggtatcaaatgaacaggat 2772 Query: 266 ctgggatcaataggcggattatgttctagcttactgtttcgttatgtgtttacaatagca 325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2771 ctgggatcaataggcggattatgttctagcttactgtttcgttatgtgtttacaatagca 2712 Query: 326 aagttcgttacataacaaaatgcttacaaaagttgctagttacactatgacagttttcaa 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2711 aagttcgttacataacaaaatgcttacaaaagttgctagttacactatgacagttttcaa 2652 Query: 386 ttggcaagtatgaatc 401 |||||||||||||||| Sbjct: 2651 ttggcaagtatgaatc 2636 >CG14995-RC feature: mRNA loc=3L:complement(4074964..4075748,4075826..4075919, 4076262..4076500,4076598..4076693,4077530..4077604, 4078133..4078430,4078652..4078825,4081406..4081471, 4082103..4083544);ID=FBan0014995;gene_id=FBgn0035497;gene _sym=CG14995;sym=CG14995;scaffold=AE003480;len=3269 Length = 3269 Score = 672 bits (339), Expect = 0.0 Identities = 367/376 (97%), Gaps = 2/376 (0%) Strand = Plus / Minus Query: 27 gcattttaggtaaatatattaaaattaaggtttagcgttatttgcttt-gcgtacaaata 85 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 3181 gcattttaggtaaatatattaaaattaaggtttagcgttatttgcttttgcgtacaaata 3122 Query: 86 tttaacaaagtcatgagtatgatttcaactaatcttattaagaatctaggaagatacatt 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3121 tttaacaaagtcatgagtatgatttcaactaatcttattaagaatctaggaagatacatt 3062 Query: 146 gtgctccttcgccttgggcgacattagttcgctagtcgatcttctcgagttaagtacnnn 205 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3061 gtgctccttcgccttgggcgacattagttcgctagtcgatcttctcgagttaagtacaaa 3002 Query: 206 nnnnngggctagtttttgtggtctgtgcttgggattgattgggtatcaaatgaacaggat 265 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3001 aaaa-gggctagtttttgtggtctgtgcttgggattgattgggtatcaaatgaacaggat 2943 Query: 266 ctgggatcaataggcggattatgttctagcttactgtttcgttatgtgtttacaatagca 325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2942 ctgggatcaataggcggattatgttctagcttactgtttcgttatgtgtttacaatagca 2883 Query: 326 aagttcgttacataacaaaatgcttacaaaagttgctagttacactatgacagttttcaa 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2882 aagttcgttacataacaaaatgcttacaaaagttgctagttacactatgacagttttcaa 2823 Query: 386 ttggcaagtatgaatc 401 |||||||||||||||| Sbjct: 2822 ttggcaagtatgaatc 2807 >CG14995-RB feature: mRNA loc=3L:complement(4074964..4075748,4075826..4075919, 4076262..4076500,4078133..4078430,4078652..4078825, 4081406..4081471, 4081622..4081840);ID=FBan0014995;gene_id=FBgn0035497;gene _sym=CG14995;sym=CG14995;scaffold=AE003480;len=1875 Length = 1875 Score = 672 bits (339), Expect = 0.0 Identities = 367/376 (97%), Gaps = 2/376 (0%) Strand = Plus / Minus Query: 27 gcattttaggtaaatatattaaaattaaggtttagcgttatttgcttt-gcgtacaaata 85 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1787 gcattttaggtaaatatattaaaattaaggtttagcgttatttgcttttgcgtacaaata 1728 Query: 86 tttaacaaagtcatgagtatgatttcaactaatcttattaagaatctaggaagatacatt 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1727 tttaacaaagtcatgagtatgatttcaactaatcttattaagaatctaggaagatacatt 1668 Query: 146 gtgctccttcgccttgggcgacattagttcgctagtcgatcttctcgagttaagtacnnn 205 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1667 gtgctccttcgccttgggcgacattagttcgctagtcgatcttctcgagttaagtacaaa 1608 Query: 206 nnnnngggctagtttttgtggtctgtgcttgggattgattgggtatcaaatgaacaggat 265 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1607 aaaa-gggctagtttttgtggtctgtgcttgggattgattgggtatcaaatgaacaggat 1549 Query: 266 ctgggatcaataggcggattatgttctagcttactgtttcgttatgtgtttacaatagca 325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1548 ctgggatcaataggcggattatgttctagcttactgtttcgttatgtgtttacaatagca 1489 Query: 326 aagttcgttacataacaaaatgcttacaaaagttgctagttacactatgacagttttcaa 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1488 aagttcgttacataacaaaatgcttacaaaagttgctagttacactatgacagttttcaa 1429 Query: 386 ttggcaagtatgaatc 401 |||||||||||||||| Sbjct: 1428 ttggcaagtatgaatc 1413 >CG14995-RA feature: mRNA loc=3L:complement(4074964..4075748,4075826..4075919, 4076262..4076500,4076598..4076693,4077530..4077604, 4077832..4077960,4078133..4078430,4078652..4078825, 4081406..4081471, 4082103..4083544);ID=FBan0014995;gene_id=FBgn0035497;gene _sym=CG14995;sym=CG14995;scaffold=AE003480;len=3398 Length = 3398 Score = 672 bits (339), Expect = 0.0 Identities = 367/376 (97%), Gaps = 2/376 (0%) Strand = Plus / Minus Query: 27 gcattttaggtaaatatattaaaattaaggtttagcgttatttgcttt-gcgtacaaata 85 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 3310 gcattttaggtaaatatattaaaattaaggtttagcgttatttgcttttgcgtacaaata 3251 Query: 86 tttaacaaagtcatgagtatgatttcaactaatcttattaagaatctaggaagatacatt 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3250 tttaacaaagtcatgagtatgatttcaactaatcttattaagaatctaggaagatacatt 3191 Query: 146 gtgctccttcgccttgggcgacattagttcgctagtcgatcttctcgagttaagtacnnn 205 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3190 gtgctccttcgccttgggcgacattagttcgctagtcgatcttctcgagttaagtacaaa 3131 Query: 206 nnnnngggctagtttttgtggtctgtgcttgggattgattgggtatcaaatgaacaggat 265 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3130 aaaa-gggctagtttttgtggtctgtgcttgggattgattgggtatcaaatgaacaggat 3072 Query: 266 ctgggatcaataggcggattatgttctagcttactgtttcgttatgtgtttacaatagca 325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3071 ctgggatcaataggcggattatgttctagcttactgtttcgttatgtgtttacaatagca 3012 Query: 326 aagttcgttacataacaaaatgcttacaaaagttgctagttacactatgacagttttcaa 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3011 aagttcgttacataacaaaatgcttacaaaagttgctagttacactatgacagttttcaa 2952 Query: 386 ttggcaagtatgaatc 401 |||||||||||||||| Sbjct: 2951 ttggcaagtatgaatc 2936 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7058 Number of Sequences: 18737 Number of extensions: 7058 Number of successful extensions: 587 Number of sequences better than 1.0e-100: 4 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 575 Number of HSP's gapped (non-prelim): 8 length of query: 401 length of database: 41,270,998 effective HSP length: 17 effective length of query: 384 effective length of database: 40,952,469 effective search space: 15725748096 effective search space used: 15725748096 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945866|AI945866 bs17g05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs17g05 5', mRNA sequence. (392 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7326 Number of Sequences: 18737 Number of extensions: 7326 Number of successful extensions: 481 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 481 Number of HSP's gapped (non-prelim): 0 length of query: 392 length of database: 41,270,998 effective HSP length: 17 effective length of query: 375 effective length of database: 40,952,469 effective search space: 15357175875 effective search space used: 15357175875 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945869|AI945869 bs17g08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs17g08 5', mRNA sequence. (373 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8378 Number of Sequences: 18737 Number of extensions: 8378 Number of successful extensions: 634 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 634 Number of HSP's gapped (non-prelim): 0 length of query: 373 length of database: 41,270,998 effective HSP length: 17 effective length of query: 356 effective length of database: 40,952,469 effective search space: 14579078964 effective search space used: 14579078964 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945872|AI945872 bs17g11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs17g11 5', mRNA sequence. (399 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5263 Number of Sequences: 18737 Number of extensions: 5263 Number of successful extensions: 357 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 357 Number of HSP's gapped (non-prelim): 0 length of query: 399 length of database: 41,270,998 effective HSP length: 17 effective length of query: 382 effective length of database: 40,952,469 effective search space: 15643843158 effective search space used: 15643843158 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945884|AI945884 bs17h12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs17h12 5', mRNA sequence. (390 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 24,383 Number of Sequences: 18737 Number of extensions: 24383 Number of successful extensions: 3001 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3001 Number of HSP's gapped (non-prelim): 0 length of query: 390 length of database: 41,270,998 effective HSP length: 17 effective length of query: 373 effective length of database: 40,952,469 effective search space: 15275270937 effective search space used: 15275270937 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945891|AI945891 bs18a07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs18a07 5', mRNA sequence. (516 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value trio-RF feature: mRNA loc=3L:complement(977837..978920,978980..9... 955 0.0 trio-RE feature: mRNA loc=3L:complement(976607..978920,978980..9... 955 0.0 trio-RD feature: mRNA loc=3L:complement(976607..978920,978980..9... 955 0.0 trio-RC feature: mRNA loc=3L:complement(976607..978920,978980..9... 955 0.0 trio-RB feature: mRNA loc=3L:complement(976607..978920,978980..9... 955 0.0 trio-RA feature: mRNA loc=3L:complement(976607..978920,978980..9... 955 0.0 >trio-RF feature: mRNA loc=3L:complement(977837..978920,978980..979360, 979453..979642,979708..979824,979889..980004, 980076..980171,980246..980311,984025..984282, 984357..984450, 987846..988404);ID=FBan0018214;gene_id=FBgn0024277;gene_s ym=trio;sym=CG18214;scaffold=AE003470;len=2961 Length = 2961 Score = 955 bits (482), Expect = 0.0 Identities = 504/510 (98%), Gaps = 1/510 (0%) Strand = Plus / Minus Query: 8 cttgagcatataatactttgcgtttcatacacacaaatccggaatagaaaacaaaaacta 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2464 cttgagcatataatactttgcgtttcatacacacaaatccggaatagaaaacaaaaacta 2405 Query: 68 tacgaacagaaaggcggcccaactaaaatctaaaggtggactgtacggaaacgcagttga 127 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct: 2404 tacgaacagaaaggcggcccaactaaaatctaaaggtggactgaacggaaacgcaattga 2345 Query: 128 tgacgaataaataaattacaattacaagtaacatacaaattaggattgagtatgcgagtg 187 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 2344 tgacgaataaataaattacaattacaagttacatacaaattaggattgagtatgcgagtg 2285 Query: 188 tttctgggtgtgagtgagcaaaactatccgtaaacaaacgcacagacggaaaaacaagtg 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2284 tttctgggtgtgagtgagcaaaactatccgtaaacaaacgcacagacggaaaaacaagtg 2225 Query: 248 cgaggctaatgctcactgcggtggcggaacacctttgcccaaaacacatttgaatatcat 307 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2224 cgaggctaatgctcacttcggtggcggaacacctttgcccaaaacacatttgaatatcat 2165 Query: 308 tttctcatactttcgtttgttgttcttgcttgcttttaagcttcctgccttatcatttgg 367 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 2164 tttctcatactttcgtttgttgttcttgcttgcctttaagcttcctgccttatcatttgg 2105 Query: 368 aattctttcgccaacggcgttcatttgtttttggttgacaggggattggagagcatgaag 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2104 aattctttcgccaacggcgttcatttgtttttggttgacaggggattggagagcatgaag 2045 Query: 428 atcaggtcgttctgctgctgcagtatcttgtttagcatatcgcgccaccccgcgtagttc 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2044 atcaggtcgttctgctgctgcagtatcttgtttagcatatcgcgccaccccgcgtagttc 1985 Query: 488 tcctg-gacgccgcctggcagatgatcgtc 516 ||||| |||||||||||||||||||||||| Sbjct: 1984 tcctgcgacgccgcctggcagatgatcgtc 1955 >trio-RE feature: mRNA loc=3L:complement(976607..978920,978980..979360, 979453..979642,979708..979824,979889..980004, 980076..980171,980246..980311, 981007..981196);ID=FBan0018214;gene_id=FBgn0024277;gene_s ym=trio;sym=CG18214;scaffold=AE003470;len=3470 Length = 3470 Score = 955 bits (482), Expect = 0.0 Identities = 504/510 (98%), Gaps = 1/510 (0%) Strand = Plus / Minus Query: 8 cttgagcatataatactttgcgtttcatacacacaaatccggaatagaaaacaaaaacta 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1743 cttgagcatataatactttgcgtttcatacacacaaatccggaatagaaaacaaaaacta 1684 Query: 68 tacgaacagaaaggcggcccaactaaaatctaaaggtggactgtacggaaacgcagttga 127 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct: 1683 tacgaacagaaaggcggcccaactaaaatctaaaggtggactgaacggaaacgcaattga 1624 Query: 128 tgacgaataaataaattacaattacaagtaacatacaaattaggattgagtatgcgagtg 187 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1623 tgacgaataaataaattacaattacaagttacatacaaattaggattgagtatgcgagtg 1564 Query: 188 tttctgggtgtgagtgagcaaaactatccgtaaacaaacgcacagacggaaaaacaagtg 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1563 tttctgggtgtgagtgagcaaaactatccgtaaacaaacgcacagacggaaaaacaagtg 1504 Query: 248 cgaggctaatgctcactgcggtggcggaacacctttgcccaaaacacatttgaatatcat 307 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1503 cgaggctaatgctcacttcggtggcggaacacctttgcccaaaacacatttgaatatcat 1444 Query: 308 tttctcatactttcgtttgttgttcttgcttgcttttaagcttcctgccttatcatttgg 367 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1443 tttctcatactttcgtttgttgttcttgcttgcctttaagcttcctgccttatcatttgg 1384 Query: 368 aattctttcgccaacggcgttcatttgtttttggttgacaggggattggagagcatgaag 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1383 aattctttcgccaacggcgttcatttgtttttggttgacaggggattggagagcatgaag 1324 Query: 428 atcaggtcgttctgctgctgcagtatcttgtttagcatatcgcgccaccccgcgtagttc 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1323 atcaggtcgttctgctgctgcagtatcttgtttagcatatcgcgccaccccgcgtagttc 1264 Query: 488 tcctg-gacgccgcctggcagatgatcgtc 516 ||||| |||||||||||||||||||||||| Sbjct: 1263 tcctgcgacgccgcctggcagatgatcgtc 1234 >trio-RD feature: mRNA loc=3L:complement(976607..978920,978980..979360, 979453..979642,979708..979824,979889..980004, 980076..980171,980246..980311,984025..984282, 984357..984450,989951..990008,990074..990368, 999191..999901, 1003307..1003518);ID=FBan0018214;gene_id=FBgn0024277;gene _sym=trio;sym=CG18214;scaffold=AE003470;len=4908 Length = 4908 Score = 955 bits (482), Expect = 0.0 Identities = 504/510 (98%), Gaps = 1/510 (0%) Strand = Plus / Minus Query: 8 cttgagcatataatactttgcgtttcatacacacaaatccggaatagaaaacaaaaacta 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3181 cttgagcatataatactttgcgtttcatacacacaaatccggaatagaaaacaaaaacta 3122 Query: 68 tacgaacagaaaggcggcccaactaaaatctaaaggtggactgtacggaaacgcagttga 127 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct: 3121 tacgaacagaaaggcggcccaactaaaatctaaaggtggactgaacggaaacgcaattga 3062 Query: 128 tgacgaataaataaattacaattacaagtaacatacaaattaggattgagtatgcgagtg 187 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 3061 tgacgaataaataaattacaattacaagttacatacaaattaggattgagtatgcgagtg 3002 Query: 188 tttctgggtgtgagtgagcaaaactatccgtaaacaaacgcacagacggaaaaacaagtg 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3001 tttctgggtgtgagtgagcaaaactatccgtaaacaaacgcacagacggaaaaacaagtg 2942 Query: 248 cgaggctaatgctcactgcggtggcggaacacctttgcccaaaacacatttgaatatcat 307 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2941 cgaggctaatgctcacttcggtggcggaacacctttgcccaaaacacatttgaatatcat 2882 Query: 308 tttctcatactttcgtttgttgttcttgcttgcttttaagcttcctgccttatcatttgg 367 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 2881 tttctcatactttcgtttgttgttcttgcttgcctttaagcttcctgccttatcatttgg 2822 Query: 368 aattctttcgccaacggcgttcatttgtttttggttgacaggggattggagagcatgaag 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2821 aattctttcgccaacggcgttcatttgtttttggttgacaggggattggagagcatgaag 2762 Query: 428 atcaggtcgttctgctgctgcagtatcttgtttagcatatcgcgccaccccgcgtagttc 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2761 atcaggtcgttctgctgctgcagtatcttgtttagcatatcgcgccaccccgcgtagttc 2702 Query: 488 tcctg-gacgccgcctggcagatgatcgtc 516 ||||| |||||||||||||||||||||||| Sbjct: 2701 tcctgcgacgccgcctggcagatgatcgtc 2672 >trio-RC feature: mRNA loc=3L:complement(976607..978920,978980..979360, 979453..979642,979708..979824,979889..980004, 980076..980171,980246..980311,984025..984282, 984357..984450,989951..990008,990074..990368, 1004833..1005036,1005095..1006975,1007035..1009140, 1009709..1010252,1014279..1014694, 1015127..1015504);ID=FBan0018214;gene_id=FBgn0024277;gene _sym=trio;sym=CG18214;scaffold=AE003470;len=9514 Length = 9514 Score = 955 bits (482), Expect = 0.0 Identities = 504/510 (98%), Gaps = 1/510 (0%) Strand = Plus / Minus Query: 8 cttgagcatataatactttgcgtttcatacacacaaatccggaatagaaaacaaaaacta 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7787 cttgagcatataatactttgcgtttcatacacacaaatccggaatagaaaacaaaaacta 7728 Query: 68 tacgaacagaaaggcggcccaactaaaatctaaaggtggactgtacggaaacgcagttga 127 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct: 7727 tacgaacagaaaggcggcccaactaaaatctaaaggtggactgaacggaaacgcaattga 7668 Query: 128 tgacgaataaataaattacaattacaagtaacatacaaattaggattgagtatgcgagtg 187 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 7667 tgacgaataaataaattacaattacaagttacatacaaattaggattgagtatgcgagtg 7608 Query: 188 tttctgggtgtgagtgagcaaaactatccgtaaacaaacgcacagacggaaaaacaagtg 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7607 tttctgggtgtgagtgagcaaaactatccgtaaacaaacgcacagacggaaaaacaagtg 7548 Query: 248 cgaggctaatgctcactgcggtggcggaacacctttgcccaaaacacatttgaatatcat 307 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 7547 cgaggctaatgctcacttcggtggcggaacacctttgcccaaaacacatttgaatatcat 7488 Query: 308 tttctcatactttcgtttgttgttcttgcttgcttttaagcttcctgccttatcatttgg 367 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 7487 tttctcatactttcgtttgttgttcttgcttgcctttaagcttcctgccttatcatttgg 7428 Query: 368 aattctttcgccaacggcgttcatttgtttttggttgacaggggattggagagcatgaag 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7427 aattctttcgccaacggcgttcatttgtttttggttgacaggggattggagagcatgaag 7368 Query: 428 atcaggtcgttctgctgctgcagtatcttgtttagcatatcgcgccaccccgcgtagttc 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7367 atcaggtcgttctgctgctgcagtatcttgtttagcatatcgcgccaccccgcgtagttc 7308 Query: 488 tcctg-gacgccgcctggcagatgatcgtc 516 ||||| |||||||||||||||||||||||| Sbjct: 7307 tcctgcgacgccgcctggcagatgatcgtc 7278 >trio-RB feature: mRNA loc=3L:complement(976607..978920,978980..979360, 979453..979642,979708..979824,979889..980004, 980076..980171,980246..980311,984025..984282, 984357..984450, 987846..988388);ID=FBan0018214;gene_id=FBgn0024277;gene_s ym=trio;sym=CG18214;scaffold=AE003470;len=4175 Length = 4175 Score = 955 bits (482), Expect = 0.0 Identities = 504/510 (98%), Gaps = 1/510 (0%) Strand = Plus / Minus Query: 8 cttgagcatataatactttgcgtttcatacacacaaatccggaatagaaaacaaaaacta 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2448 cttgagcatataatactttgcgtttcatacacacaaatccggaatagaaaacaaaaacta 2389 Query: 68 tacgaacagaaaggcggcccaactaaaatctaaaggtggactgtacggaaacgcagttga 127 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct: 2388 tacgaacagaaaggcggcccaactaaaatctaaaggtggactgaacggaaacgcaattga 2329 Query: 128 tgacgaataaataaattacaattacaagtaacatacaaattaggattgagtatgcgagtg 187 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 2328 tgacgaataaataaattacaattacaagttacatacaaattaggattgagtatgcgagtg 2269 Query: 188 tttctgggtgtgagtgagcaaaactatccgtaaacaaacgcacagacggaaaaacaagtg 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2268 tttctgggtgtgagtgagcaaaactatccgtaaacaaacgcacagacggaaaaacaagtg 2209 Query: 248 cgaggctaatgctcactgcggtggcggaacacctttgcccaaaacacatttgaatatcat 307 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2208 cgaggctaatgctcacttcggtggcggaacacctttgcccaaaacacatttgaatatcat 2149 Query: 308 tttctcatactttcgtttgttgttcttgcttgcttttaagcttcctgccttatcatttgg 367 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 2148 tttctcatactttcgtttgttgttcttgcttgcctttaagcttcctgccttatcatttgg 2089 Query: 368 aattctttcgccaacggcgttcatttgtttttggttgacaggggattggagagcatgaag 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2088 aattctttcgccaacggcgttcatttgtttttggttgacaggggattggagagcatgaag 2029 Query: 428 atcaggtcgttctgctgctgcagtatcttgtttagcatatcgcgccaccccgcgtagttc 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2028 atcaggtcgttctgctgctgcagtatcttgtttagcatatcgcgccaccccgcgtagttc 1969 Query: 488 tcctg-gacgccgcctggcagatgatcgtc 516 ||||| |||||||||||||||||||||||| Sbjct: 1968 tcctgcgacgccgcctggcagatgatcgtc 1939 >trio-RA feature: mRNA loc=3L:complement(976607..978920,978980..979360, 979453..979642,979708..979824,979889..980004, 980076..980171,980246..980311,984025..984282, 984357..984450,989951..990008,990074..990368, 1004833..1005036,1005095..1006975,1007035..1009140, 1009709..1010252,1014279..1014694, 1015392..1015504);ID=FBan0018214;gene_id=FBgn0024277;gene _sym=trio;sym=CG18214;scaffold=AE003470;len=9249 Length = 9249 Score = 955 bits (482), Expect = 0.0 Identities = 504/510 (98%), Gaps = 1/510 (0%) Strand = Plus / Minus Query: 8 cttgagcatataatactttgcgtttcatacacacaaatccggaatagaaaacaaaaacta 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7522 cttgagcatataatactttgcgtttcatacacacaaatccggaatagaaaacaaaaacta 7463 Query: 68 tacgaacagaaaggcggcccaactaaaatctaaaggtggactgtacggaaacgcagttga 127 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct: 7462 tacgaacagaaaggcggcccaactaaaatctaaaggtggactgaacggaaacgcaattga 7403 Query: 128 tgacgaataaataaattacaattacaagtaacatacaaattaggattgagtatgcgagtg 187 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 7402 tgacgaataaataaattacaattacaagttacatacaaattaggattgagtatgcgagtg 7343 Query: 188 tttctgggtgtgagtgagcaaaactatccgtaaacaaacgcacagacggaaaaacaagtg 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7342 tttctgggtgtgagtgagcaaaactatccgtaaacaaacgcacagacggaaaaacaagtg 7283 Query: 248 cgaggctaatgctcactgcggtggcggaacacctttgcccaaaacacatttgaatatcat 307 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 7282 cgaggctaatgctcacttcggtggcggaacacctttgcccaaaacacatttgaatatcat 7223 Query: 308 tttctcatactttcgtttgttgttcttgcttgcttttaagcttcctgccttatcatttgg 367 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 7222 tttctcatactttcgtttgttgttcttgcttgcctttaagcttcctgccttatcatttgg 7163 Query: 368 aattctttcgccaacggcgttcatttgtttttggttgacaggggattggagagcatgaag 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7162 aattctttcgccaacggcgttcatttgtttttggttgacaggggattggagagcatgaag 7103 Query: 428 atcaggtcgttctgctgctgcagtatcttgtttagcatatcgcgccaccccgcgtagttc 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7102 atcaggtcgttctgctgctgcagtatcttgtttagcatatcgcgccaccccgcgtagttc 7043 Query: 488 tcctg-gacgccgcctggcagatgatcgtc 516 ||||| |||||||||||||||||||||||| Sbjct: 7042 tcctgcgacgccgcctggcagatgatcgtc 7013 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,111 Number of Sequences: 18737 Number of extensions: 16111 Number of successful extensions: 459 Number of sequences better than 1.0e-100: 6 Number of HSP's better than 0.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 447 Number of HSP's gapped (non-prelim): 6 length of query: 516 length of database: 41,270,998 effective HSP length: 17 effective length of query: 499 effective length of database: 40,952,469 effective search space: 20435282031 effective search space used: 20435282031 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945896|AI945896 bs18a12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs18a12 5', mRNA sequence. (487 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,245 Number of Sequences: 18737 Number of extensions: 11245 Number of successful extensions: 296 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 296 Number of HSP's gapped (non-prelim): 0 length of query: 487 length of database: 41,270,998 effective HSP length: 17 effective length of query: 470 effective length of database: 40,952,469 effective search space: 19247660430 effective search space used: 19247660430 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945904|AI945904 bs18b09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs18b09 5', mRNA sequence. (219 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 168 Number of Sequences: 18737 Number of extensions: 168 Number of successful extensions: 6 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 6 Number of HSP's gapped (non-prelim): 0 length of query: 219 length of database: 41,270,998 effective HSP length: 16 effective length of query: 203 effective length of database: 40,971,206 effective search space: 8317154818 effective search space used: 8317154818 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945907|AI945907 bs18b12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs18b12 5', mRNA sequence. (370 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8269 Number of Sequences: 18737 Number of extensions: 8269 Number of successful extensions: 830 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 830 Number of HSP's gapped (non-prelim): 0 length of query: 370 length of database: 41,270,998 effective HSP length: 17 effective length of query: 353 effective length of database: 40,952,469 effective search space: 14456221557 effective search space used: 14456221557 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945912|AI945912 bs18c05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs18c05 5', mRNA sequence. (405 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9780 Number of Sequences: 18737 Number of extensions: 9780 Number of successful extensions: 836 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 836 Number of HSP's gapped (non-prelim): 0 length of query: 405 length of database: 41,270,998 effective HSP length: 17 effective length of query: 388 effective length of database: 40,952,469 effective search space: 15889557972 effective search space used: 15889557972 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945926|AI945926 bs18d08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs18d08 5', mRNA sequence. (517 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG14926-RA feature: mRNA loc=2L:complement(11331184..11331399,11... 559 e-159 >CG14926-RA feature: mRNA loc=2L:complement(11331184..11331399,11331454..11331650, 11331708..11331916, 11331971..11332134);ID=FBan0014926;gene_id=FBgn0032360;g ene_sym=CG14926;sym=CG14926;scaffold=AE003632;len=786 Length = 786 Score = 559 bits (282), Expect = e-159 Identities = 307/314 (97%), Gaps = 1/314 (0%) Strand = Plus / Minus Query: 37 aaatgtgccaaatatttattatgtgatcaattaattattcttaaacgggaaatttcgagt 96 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 780 aaatgtgccaaatatttattatgtgatcaatttattattcttaaacgggaaatttcgagt 721 Query: 97 tacttgctttgtgaatatacatttcatgggaagcctattatatttaattttcaagtgcca 156 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 720 tacttgctttgtgaatatacatttcatgggaagcctattatatttaattttcaagtgcca 661 Query: 157 aatgagatccgtaaagttagtttggaactagtgggctcttcttagaaccaactaccacgg 216 |||||||| ||||||||||||| ||||||| |||||||||| |||||||||||||||||| Sbjct: 660 aatgagattcgtaaagttagttaggaactaatgggctcttc-tagaaccaactaccacgg 602 Query: 217 tgggattgcgaagggttcggatcattgagaccgttcgaagagtagcctccagctaacctt 276 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 601 tgggattgcgaagggttcggatcattgagaccattcgaagagtagcctccagctaacctt 542 Query: 277 tgaccaccacgcatggaaccaattcgcattccagcgccaaggccattgctcatgcccatg 336 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 541 tgaccaccacgcatggaaccaactcgcattccagcgccaaggccattgctcatgcccatg 482 Query: 337 ccggaacccatgcc 350 |||||||||||||| Sbjct: 481 ccggaacccatgcc 468 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9947 Number of Sequences: 18737 Number of extensions: 9947 Number of successful extensions: 240 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 236 Number of HSP's gapped (non-prelim): 3 length of query: 517 length of database: 41,270,998 effective HSP length: 17 effective length of query: 500 effective length of database: 40,952,469 effective search space: 20476234500 effective search space used: 20476234500 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945929|AI945929 bs18d12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs18d12 5', mRNA sequence. (467 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32591-RA feature: mRNA loc=X:complement(14658611..14659958);ID... 852 0.0 >CG32591-RA feature: mRNA loc=X:complement(14658611..14659958);ID=FBan0032591;gene _id=FBgn0052591;gene_sym=CG32591;sym=CG32591;scaffold=AE 003497;len=1348 Length = 1348 Score = 852 bits (430), Expect = 0.0 Identities = 433/434 (99%) Strand = Plus / Plus Query: 34 tcgtctcactctagctttcggatcaattttcactattcctttgttttctttatgtgataa 93 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31 tcgtctcactctagctttcggatcaattttcactattcctttgttttctttatgtgataa 90 Query: 94 taaatacacaaatattttcaatccagtttcatcgatttgcaagttaatataacgatatat 153 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 91 taaatacacaaatattttcaatccagtttcatcgatttgcaagttaatataacgatatat 150 Query: 154 acacaacacaaaggacacaatgtccgcactacggcgatcacatggcggaggtcgtgattt 213 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 151 acacaacacaaaggacacaatgtccgcactacggcgatcacatggcggaggtcgtgattt 210 Query: 214 tctgcaggagaacaagcaaaatgtgtctagaatggagaccaatggcagatgtatagcggc 273 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 211 tctgcaggagaacaagcaaaatgtgtctagaatggagaccaatggcagatgtatagcggc 270 Query: 274 ggccaatgcccgtcgtgttcccctgtggcgtccagtggtcctccactatccggagaagtt 333 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 271 ggccaatgcccgtcgtgttcccctgtggcgtccagtggtcctccactatccggagaagtt 330 Query: 334 gcgtccccatgtctacaatattcagcgtcgtacacgcccgctgcacggagcccatgagtc 393 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 331 gcgtccccatgtctacaatattcagcgtcgtacacgcccgctgcacggagcccatgagtc 390 Query: 394 tcctcgcctgcgaagcggtcttgcccagccgtatggctttcacaacgagatgcgccgcaa 453 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 391 tcctcgcctgcgaagcggtcttgcccagccgtatggctttcacaacgagatgcgccgcag 450 Query: 454 gatgccaccaaatc 467 |||||||||||||| Sbjct: 451 gatgccaccaaatc 464 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,811 Number of Sequences: 18737 Number of extensions: 10811 Number of successful extensions: 234 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 232 Number of HSP's gapped (non-prelim): 2 length of query: 467 length of database: 41,270,998 effective HSP length: 17 effective length of query: 450 effective length of database: 40,952,469 effective search space: 18428611050 effective search space used: 18428611050 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945931|AI945931 bs18e02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs18e02 5', mRNA sequence. (399 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31468-RA feature: mRNA loc=3R:complement(19516200..19516498,19... 777 0.0 >CG31468-RA feature: mRNA loc=3R:complement(19516200..19516498, 19516559..19516733);ID=FBan0031468;gene_id=FBgn0047351;g ene_sym=CG31468;sym=CG31468;scaffold=AE003744;len=474 Length = 474 Score = 777 bits (392), Expect = 0.0 Identities = 392/392 (100%) Strand = Plus / Plus Query: 8 tctttttagagtttcaaaattttacatatttctaaaaataacttacagttcctgaccttt 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18 tctttttagagtttcaaaattttacatatttctaaaaataacttacagttcctgaccttt 77 Query: 68 cgtaacctttgcatacgctcatcgattccaaaacttcgctaaaataaataaattttgaaa 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 78 cgtaacctttgcatacgctcatcgattccaaaacttcgctaaaataaataaattttgaaa 137 Query: 128 tcgttagtttaaaagcatgtcgtgcaatcgttcttttggacctggccctggtgcctacaa 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 138 tcgttagtttaaaagcatgtcgtgcaatcgttcttttggacctggccctggtgcctacaa 197 Query: 188 tctgcccagcacctttgggtttaagaactgcgacaagaggatgcagcgaagtccacagtt 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 198 tctgcccagcacctttgggtttaagaactgcgacaagaggatgcagcgaagtccacagtt 257 Query: 248 ctcatttggcagatcgtcgagggcgtgtaatagtcctaggataccgcagggacccggccc 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 258 ctcatttggcagatcgtcgagggcgtgtaatagtcctaggataccgcagggacccggccc 317 Query: 308 agcagattatcatgtgggcaaaataacgcgatatggacgtcctgcatcggaggacttcaa 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 318 agcagattatcatgtgggcaaaataacgcgatatggacgtcctgcatcggaggacttcaa 377 Query: 368 tgtttatcgtcgtcgctaatgggttaaggaat 399 |||||||||||||||||||||||||||||||| Sbjct: 378 tgtttatcgtcgtcgctaatgggttaaggaat 409 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9711 Number of Sequences: 18737 Number of extensions: 9711 Number of successful extensions: 795 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 794 Number of HSP's gapped (non-prelim): 1 length of query: 399 length of database: 41,270,998 effective HSP length: 17 effective length of query: 382 effective length of database: 40,952,469 effective search space: 15643843158 effective search space used: 15643843158 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945932|AI945932 bs18e03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs18e03 5', mRNA sequence. (400 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9257 Number of Sequences: 18737 Number of extensions: 9257 Number of successful extensions: 682 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 682 Number of HSP's gapped (non-prelim): 0 length of query: 400 length of database: 41,270,998 effective HSP length: 17 effective length of query: 383 effective length of database: 40,952,469 effective search space: 15684795627 effective search space used: 15684795627 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945942|AI945942 bs18f03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs18f03 5', mRNA sequence. (393 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG4706-RA feature: mRNA loc=3R:6962917..6965490;ID=FBan0004706;g... 765 0.0 >CG4706-RA feature: mRNA loc=3R:6962917..6965490;ID=FBan0004706;gene_id=FBgn003786 2;gene_sym=CG4706;sym=CG4706;scaffold=AE003690;len=2574 Length = 2574 Score = 765 bits (386), Expect = 0.0 Identities = 386/386 (100%) Strand = Plus / Minus Query: 8 gttgatttatttccagaataattgtacaaggagatatttatcttccggttgccaacttaa 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2559 gttgatttatttccagaataattgtacaaggagatatttatcttccggttgccaacttaa 2500 Query: 68 actattaagtactggttatgctctttatgagatacaaacgtagtaatttagtaaagtgaa 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2499 actattaagtactggttatgctctttatgagatacaaacgtagtaatttagtaaagtgaa 2440 Query: 128 tattgatgagaactatttcttatcgccacccttggcggcaagctccttcattagattcaa 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2439 tattgatgagaactatttcttatcgccacccttggcggcaagctccttcattagattcaa 2380 Query: 188 ggcacttccagcctggaaccactggatctgcagctcattaagggtgtggttcaactggat 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2379 ggcacttccagcctggaaccactggatctgcagctcattaagggtgtggttcaactggat 2320 Query: 248 tttgtcggagctaccattattcttgatctcagcatccacaggcttgccaggtgccaagtc 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2319 tttgtcggagctaccattattcttgatctcagcatccacaggcttgccaggtgccaagtc 2260 Query: 308 cttgaggttcagtatcgaaatcttgctcgacggctgaactttgtcgtagtcaccgggatt 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2259 cttgaggttcagtatcgaaatcttgctcgacggctgaactttgtcgtagtcaccgggatt 2200 Query: 368 ggcgaatgtcagggcgagcataccct 393 |||||||||||||||||||||||||| Sbjct: 2199 ggcgaatgtcagggcgagcataccct 2174 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7804 Number of Sequences: 18737 Number of extensions: 7804 Number of successful extensions: 620 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 619 Number of HSP's gapped (non-prelim): 1 length of query: 393 length of database: 41,270,998 effective HSP length: 17 effective length of query: 376 effective length of database: 40,952,469 effective search space: 15398128344 effective search space used: 15398128344 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945944|AI945944 bs18f05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs18f05 5', mRNA sequence. (112 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 0 Number of Sequences: 18737 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 112 length of database: 41,270,998 effective HSP length: 16 effective length of query: 96 effective length of database: 40,971,206 effective search space: 3933235776 effective search space used: 3933235776 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945948|AI945948 bs18f09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs18f09 5', mRNA sequence. (466 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31538-RA feature: mRNA loc=3R:complement(1101391..1103554);ID=... 904 0.0 >CG31538-RA feature: mRNA loc=3R:complement(1101391..1103554);ID=FBan0031538;gene_ id=FBgn0051538;gene_sym=CG31538;sym=CG31538;scaffold=AE0 03603;len=2164 Length = 2164 Score = 904 bits (456), Expect = 0.0 Identities = 458/459 (99%) Strand = Plus / Plus Query: 8 tcgtttcgtacagagctctccaaaatagaaaattcgaatttatttattcagtgttttgtt 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 78 tcgtttcgtacagagctctccaaaatagaaaattcgaatttatttattcagtgttttgtt 137 Query: 68 ggtcttacgagtccgtgaaatcgagttctttagtccgtgaagaaacgtgcttcgttttcg 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 138 ggtcttacgagtccgtgaaatcgagttctttagtccgtgaagaaacgtgcttcgttttcg 197 Query: 128 caggtttttgctaaattgttcgtgtatccattggttcacattatgagtactcatcagtat 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 198 caggtttttgctaaattgttcgtgtatccattggttcacattatgagtactcatcagtat 257 Query: 188 agcctggggaggctggcccgccgaggcttcagcctgcggatgaatccgctggccggcaca 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 258 agcctggggaggctggcccgccgaggcttcagcctgcggatgaatccgctggccggcaca 317 Query: 248 ctgcaaaggctttaccacacccgtagcaggccatgtgtggcccagagtgtgagccaggtg 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 318 ctgcaaaggctttaccacacccgtagcaggccatgtgtggcccagagtgtgagccaggtg 377 Query: 308 ggtgaacggtccaagccaacgttgcagccctacgacttcgaccgaagccgggtgcgtaaa 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 378 ggtgaacggtccaagccaacgttgcagccctacgacttcgaccgaagccgggtgcgtaaa 437 Query: 368 attgccggcgagaggaagacgctggtcgaccaggtgcggngcatgagcacaagcctggga 427 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 438 attgccggcgagaggaagacgctggtcgaccaggtgcggggcatgagcacaagcctggga 497 Query: 428 catgccaagttggtgccccaaaagatgtacggcaagacg 466 ||||||||||||||||||||||||||||||||||||||| Sbjct: 498 catgccaagttggtgccccaaaagatgtacggcaagacg 536 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9184 Number of Sequences: 18737 Number of extensions: 9184 Number of successful extensions: 151 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 150 Number of HSP's gapped (non-prelim): 1 length of query: 466 length of database: 41,270,998 effective HSP length: 17 effective length of query: 449 effective length of database: 40,952,469 effective search space: 18387658581 effective search space used: 18387658581 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945949|AI945949 bs18f10.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs18f10 5', mRNA sequence. (514 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Baldspot-RB feature: mRNA loc=3L:complement(16597699..16599461,1... 936 0.0 Baldspot-RA feature: mRNA loc=3L:complement(16597699..16599461,1... 936 0.0 >Baldspot-RB feature: mRNA loc=3L:complement(16597699..16599461,16600012..16600134, 16600277..16600414,16608110..16608346, 16610291..16610507);ID=FBan0003971;gene_id=FBgn0036650;ge ne_sym=Baldspot;sym=CG3971;scaffold=AE003526;len=2478 Length = 2478 Score = 936 bits (472), Expect = 0.0 Identities = 499/509 (98%), Gaps = 1/509 (0%) Strand = Plus / Plus Query: 7 gcgaggatcaggccgcctatctgcgcaaggccaaggcgcagtaaaacggagctcggcaca 66 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1180 gcgaggatcaggcagcctatctgcgcaaggccaaggcgcagtaaaacggagctcggcaca 1239 Query: 67 ccagcacctaactcccatcatcaccactccccctgtttacggctaaggacctttatttat 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1240 ccagcacctaactcccatcatcaccactccccctgtttacggctaaggacctttatttat 1299 Query: 127 gtagcggtgtacaagttgttttttaattttaaacctgggtggcacacgaccggtcggatg 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1300 gtagcggtgtacaagttgttttttaattttaaacctgggtggcacacgaccggtcggatg 1359 Query: 187 agagtttaattttgtaagccaaaagttgtaccgtgtggacaggcgtacgaaccatatatc 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1360 agagtttaattttgtaagccaaaagttgtaccgtgtggacaggcgtacgaaccatatatc 1419 Query: 247 tgaacatgtatataaaagaagnnnnnnncagacgaacctaagctaaccaaaactcagagt 306 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1420 tgaacatgtatataaaagaagaaaaaaacagacgaacctaagctaaccaaaactcagagt 1479 Query: 307 cgagtcagaataaactctatgtaattgaggggcaaagaagcgagcgcatgaaaagcttga 366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1480 cgagtcagaataaactctatgtaattgaggggcaaagaagcgagcgcatgaaaagcttga 1539 Query: 367 attgaaatctctagatctctctagggatatgtgaaaggaacgcaaggaatttagctgctc 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1540 attgaaatctctagatctctctagggatatgtgaaaggaacgcaaggaatttagctgctc 1599 Query: 427 actagtttgcatgcgtttaattaatagtcactcctcttgatatctctcgatgtatttccc 486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1600 actagtttgcatgcgtttaattaatagtcactcctcttgatatctctcgatgtatttccc 1659 Query: 487 a-ctgcagttatagaagtgtcgttgatgt 514 | |||||||| |||||||||||||||||| Sbjct: 1660 agctgcagttctagaagtgtcgttgatgt 1688 >Baldspot-RA feature: mRNA loc=3L:complement(16597699..16599461,16600012..16600134, 16600277..16600414,16608110..16608346, 16610351..16610507);ID=FBan0003971;gene_id=FBgn0036650;ge ne_sym=Baldspot;sym=CG3971;scaffold=AE003526;len=2418 Length = 2418 Score = 936 bits (472), Expect = 0.0 Identities = 499/509 (98%), Gaps = 1/509 (0%) Strand = Plus / Plus Query: 7 gcgaggatcaggccgcctatctgcgcaaggccaaggcgcagtaaaacggagctcggcaca 66 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1120 gcgaggatcaggcagcctatctgcgcaaggccaaggcgcagtaaaacggagctcggcaca 1179 Query: 67 ccagcacctaactcccatcatcaccactccccctgtttacggctaaggacctttatttat 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1180 ccagcacctaactcccatcatcaccactccccctgtttacggctaaggacctttatttat 1239 Query: 127 gtagcggtgtacaagttgttttttaattttaaacctgggtggcacacgaccggtcggatg 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1240 gtagcggtgtacaagttgttttttaattttaaacctgggtggcacacgaccggtcggatg 1299 Query: 187 agagtttaattttgtaagccaaaagttgtaccgtgtggacaggcgtacgaaccatatatc 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1300 agagtttaattttgtaagccaaaagttgtaccgtgtggacaggcgtacgaaccatatatc 1359 Query: 247 tgaacatgtatataaaagaagnnnnnnncagacgaacctaagctaaccaaaactcagagt 306 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1360 tgaacatgtatataaaagaagaaaaaaacagacgaacctaagctaaccaaaactcagagt 1419 Query: 307 cgagtcagaataaactctatgtaattgaggggcaaagaagcgagcgcatgaaaagcttga 366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1420 cgagtcagaataaactctatgtaattgaggggcaaagaagcgagcgcatgaaaagcttga 1479 Query: 367 attgaaatctctagatctctctagggatatgtgaaaggaacgcaaggaatttagctgctc 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1480 attgaaatctctagatctctctagggatatgtgaaaggaacgcaaggaatttagctgctc 1539 Query: 427 actagtttgcatgcgtttaattaatagtcactcctcttgatatctctcgatgtatttccc 486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1540 actagtttgcatgcgtttaattaatagtcactcctcttgatatctctcgatgtatttccc 1599 Query: 487 a-ctgcagttatagaagtgtcgttgatgt 514 | |||||||| |||||||||||||||||| Sbjct: 1600 agctgcagttctagaagtgtcgttgatgt 1628 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,399 Number of Sequences: 18737 Number of extensions: 10399 Number of successful extensions: 226 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 220 Number of HSP's gapped (non-prelim): 2 length of query: 514 length of database: 41,270,998 effective HSP length: 17 effective length of query: 497 effective length of database: 40,952,469 effective search space: 20353377093 effective search space used: 20353377093 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945952|AI945952 bs18g03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs18g03 5', mRNA sequence. (401 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG4706-RA feature: mRNA loc=3R:6962917..6965490;ID=FBan0004706;g... 781 0.0 >CG4706-RA feature: mRNA loc=3R:6962917..6965490;ID=FBan0004706;gene_id=FBgn003786 2;gene_sym=CG4706;sym=CG4706;scaffold=AE003690;len=2574 Length = 2574 Score = 781 bits (394), Expect = 0.0 Identities = 394/394 (100%) Strand = Plus / Minus Query: 8 gttgatttatttccagaataattgtacaaggagatatttatcttccggttgccaacttaa 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2559 gttgatttatttccagaataattgtacaaggagatatttatcttccggttgccaacttaa 2500 Query: 68 actattaagtactggttatgctctttatgagatacaaacgtagtaatttagtaaagtgaa 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2499 actattaagtactggttatgctctttatgagatacaaacgtagtaatttagtaaagtgaa 2440 Query: 128 tattgatgagaactatttcttatcgccacccttggcggcaagctccttcattagattcaa 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2439 tattgatgagaactatttcttatcgccacccttggcggcaagctccttcattagattcaa 2380 Query: 188 ggcacttccagcctggaaccactggatctgcagctcattaagggtgtggttcaactggat 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2379 ggcacttccagcctggaaccactggatctgcagctcattaagggtgtggttcaactggat 2320 Query: 248 tttgtcggagctaccattattcttgatctcagcatccacaggcttgccaggtgccaagtc 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2319 tttgtcggagctaccattattcttgatctcagcatccacaggcttgccaggtgccaagtc 2260 Query: 308 cttgaggttcagtatcgaaatcttgctcgacggctgaactttgtcgtagtcaccgggatt 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2259 cttgaggttcagtatcgaaatcttgctcgacggctgaactttgtcgtagtcaccgggatt 2200 Query: 368 ggcgaatgtcagggcgagcataccctgtttcttt 401 |||||||||||||||||||||||||||||||||| Sbjct: 2199 ggcgaatgtcagggcgagcataccctgtttcttt 2166 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7871 Number of Sequences: 18737 Number of extensions: 7871 Number of successful extensions: 621 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 620 Number of HSP's gapped (non-prelim): 1 length of query: 401 length of database: 41,270,998 effective HSP length: 17 effective length of query: 384 effective length of database: 40,952,469 effective search space: 15725748096 effective search space used: 15725748096 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945954|AI945954 bs18g05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs18g05 5', mRNA sequence. (84 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 0 Number of Sequences: 18737 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 84 length of database: 41,270,998 effective HSP length: 16 effective length of query: 68 effective length of database: 40,971,206 effective search space: 2786042008 effective search space used: 2786042008 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945959|AI945959 bs18g10.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs18g10 5', mRNA sequence. (515 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Baldspot-RB feature: mRNA loc=3L:complement(16597699..16599461,1... 938 0.0 Baldspot-RA feature: mRNA loc=3L:complement(16597699..16599461,1... 938 0.0 >Baldspot-RB feature: mRNA loc=3L:complement(16597699..16599461,16600012..16600134, 16600277..16600414,16608110..16608346, 16610291..16610507);ID=FBan0003971;gene_id=FBgn0036650;ge ne_sym=Baldspot;sym=CG3971;scaffold=AE003526;len=2478 Length = 2478 Score = 938 bits (473), Expect = 0.0 Identities = 500/510 (98%), Gaps = 1/510 (0%) Strand = Plus / Plus Query: 7 gcgaggatcaggccgcctatctgcgcaaggccaaggcgcagtaaaacggagctcggcaca 66 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1180 gcgaggatcaggcagcctatctgcgcaaggccaaggcgcagtaaaacggagctcggcaca 1239 Query: 67 ccagcacctaactcccatcatcaccactccccctgtttacggctaaggacctttatttat 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1240 ccagcacctaactcccatcatcaccactccccctgtttacggctaaggacctttatttat 1299 Query: 127 gtagcggtgtacaagttgttttttaattttaaacctgggtggcacacgaccggtcggatg 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1300 gtagcggtgtacaagttgttttttaattttaaacctgggtggcacacgaccggtcggatg 1359 Query: 187 agagtttaattttgtaagccaaaagttgtaccgtgtggacaggcgtacgaaccatatatc 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1360 agagtttaattttgtaagccaaaagttgtaccgtgtggacaggcgtacgaaccatatatc 1419 Query: 247 tgaacatgtatataaaagaagnnnnnnncagacgaacctaagctaaccaaaactcagagt 306 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1420 tgaacatgtatataaaagaagaaaaaaacagacgaacctaagctaaccaaaactcagagt 1479 Query: 307 cgagtcagaataaactctatgtaattgaggggcaaagaagcgagcgcatgaaaagcttga 366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1480 cgagtcagaataaactctatgtaattgaggggcaaagaagcgagcgcatgaaaagcttga 1539 Query: 367 attgaaatctctagatctctctagggatatgtgaaaggaacgcaaggaatttagctgctc 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1540 attgaaatctctagatctctctagggatatgtgaaaggaacgcaaggaatttagctgctc 1599 Query: 427 actagtttgcatgcgtttaattaatagtcactcctcttgatatctctcgatgtatttccc 486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1600 actagtttgcatgcgtttaattaatagtcactcctcttgatatctctcgatgtatttccc 1659 Query: 487 agc-gcagttatagaagtgtcgttgatgta 515 ||| |||||| ||||||||||||||||||| Sbjct: 1660 agctgcagttctagaagtgtcgttgatgta 1689 >Baldspot-RA feature: mRNA loc=3L:complement(16597699..16599461,16600012..16600134, 16600277..16600414,16608110..16608346, 16610351..16610507);ID=FBan0003971;gene_id=FBgn0036650;ge ne_sym=Baldspot;sym=CG3971;scaffold=AE003526;len=2418 Length = 2418 Score = 938 bits (473), Expect = 0.0 Identities = 500/510 (98%), Gaps = 1/510 (0%) Strand = Plus / Plus Query: 7 gcgaggatcaggccgcctatctgcgcaaggccaaggcgcagtaaaacggagctcggcaca 66 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1120 gcgaggatcaggcagcctatctgcgcaaggccaaggcgcagtaaaacggagctcggcaca 1179 Query: 67 ccagcacctaactcccatcatcaccactccccctgtttacggctaaggacctttatttat 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1180 ccagcacctaactcccatcatcaccactccccctgtttacggctaaggacctttatttat 1239 Query: 127 gtagcggtgtacaagttgttttttaattttaaacctgggtggcacacgaccggtcggatg 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1240 gtagcggtgtacaagttgttttttaattttaaacctgggtggcacacgaccggtcggatg 1299 Query: 187 agagtttaattttgtaagccaaaagttgtaccgtgtggacaggcgtacgaaccatatatc 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1300 agagtttaattttgtaagccaaaagttgtaccgtgtggacaggcgtacgaaccatatatc 1359 Query: 247 tgaacatgtatataaaagaagnnnnnnncagacgaacctaagctaaccaaaactcagagt 306 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1360 tgaacatgtatataaaagaagaaaaaaacagacgaacctaagctaaccaaaactcagagt 1419 Query: 307 cgagtcagaataaactctatgtaattgaggggcaaagaagcgagcgcatgaaaagcttga 366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1420 cgagtcagaataaactctatgtaattgaggggcaaagaagcgagcgcatgaaaagcttga 1479 Query: 367 attgaaatctctagatctctctagggatatgtgaaaggaacgcaaggaatttagctgctc 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1480 attgaaatctctagatctctctagggatatgtgaaaggaacgcaaggaatttagctgctc 1539 Query: 427 actagtttgcatgcgtttaattaatagtcactcctcttgatatctctcgatgtatttccc 486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1540 actagtttgcatgcgtttaattaatagtcactcctcttgatatctctcgatgtatttccc 1599 Query: 487 agc-gcagttatagaagtgtcgttgatgta 515 ||| |||||| ||||||||||||||||||| Sbjct: 1600 agctgcagttctagaagtgtcgttgatgta 1629 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,357 Number of Sequences: 18737 Number of extensions: 10357 Number of successful extensions: 223 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 217 Number of HSP's gapped (non-prelim): 2 length of query: 515 length of database: 41,270,998 effective HSP length: 17 effective length of query: 498 effective length of database: 40,952,469 effective search space: 20394329562 effective search space used: 20394329562 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945961|AI945961 bs18h01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs18h01 5', mRNA sequence. (402 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG2183-RA feature: mRNA loc=2R:join(3228694..3228873,3228937..32... 541 e-153 >CG2183-RA feature: mRNA loc=2R:join(3228694..3228873,3228937..3229820, 3229876..3229938,3229992..3230187, 3230251..3230838);ID=FBan0002183;gene_id=FBgn0033273;gen e_sym=CG2183;sym=CG2183;scaffold=AE003838;len=1911 Length = 1911 Score = 541 bits (273), Expect = e-153 Identities = 279/281 (99%) Strand = Plus / Minus Query: 8 agatggcagtgcagccctgattatccacagcatcgaaactagcatccttaataagcagac 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 643 agatggcagtgcagccctgattatccacagcatcgaaactagcatccttaataagcagac 584 Query: 68 gcacaacgccggcaaagccattttggcaggcgaacataaagggtgtcattccatattttt 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 583 gcacaacgccggcaaagccattttggcaggcgaacataaagggtgtcattccatattttt 524 Query: 128 ccgaaacattgatcacggctccgtgccgcaagagcaggcccacaattctctccgccaggc 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 523 ccgaaacattgatcacggctccgtgccgcaagagcaggcccacaattctctccgccaggc 464 Query: 188 acggatccttgtgggtgctattgcaggccatcatcagcggcatcaaggaatccagctgcc 247 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 463 acggatccttgtgggtggtattgcaggccatcatcagcggcatcaaggaatccagctgcc 404 Query: 248 gattcacgttggcccctgccctttccagcagccatccaact 288 ||||||||||||||||||||||||||||||||||| ||||| Sbjct: 403 gattcacgttggcccctgccctttccagcagccattcaact 363 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,961 Number of Sequences: 18737 Number of extensions: 10961 Number of successful extensions: 895 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 894 Number of HSP's gapped (non-prelim): 1 length of query: 402 length of database: 41,270,998 effective HSP length: 17 effective length of query: 385 effective length of database: 40,952,469 effective search space: 15766700565 effective search space used: 15766700565 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945968|AI945968 bs18h08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs18h08 5', mRNA sequence. (251 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5520 Number of Sequences: 18737 Number of extensions: 5520 Number of successful extensions: 435 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 435 Number of HSP's gapped (non-prelim): 0 length of query: 251 length of database: 41,270,998 effective HSP length: 16 effective length of query: 235 effective length of database: 40,971,206 effective search space: 9628233410 effective search space used: 9628233410 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945975|AI945975 bs19a05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs19a05 5', mRNA sequence. (495 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8673 Number of Sequences: 18737 Number of extensions: 8673 Number of successful extensions: 173 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 173 Number of HSP's gapped (non-prelim): 0 length of query: 495 length of database: 41,270,998 effective HSP length: 17 effective length of query: 478 effective length of database: 40,952,469 effective search space: 19575280182 effective search space used: 19575280182 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945979|AI945979 bs19a11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs19a11 5', mRNA sequence. (484 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32299-RA feature: mRNA loc=3L:complement(2370229..2370469,2370... 882 0.0 >CG32299-RA feature: mRNA loc=3L:complement(2370229..2370469, 2370530..2370863);ID=FBan0032299;gene_id=FBgn0052299;gen e_sym=CG32299;sym=CG32299;scaffold=AE003474;len=575 Length = 575 Score = 882 bits (445), Expect = 0.0 Identities = 460/465 (98%) Strand = Plus / Plus Query: 20 atacacaactttcggtcgaaaattaaacctttccaagatgggcatccaaaattattacgg 79 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 13 atacacaactttcggtcgaaaattaaacctttccaagatgggcatccaaaattattacgg 72 Query: 80 caatctgaaggagaagttctcgacgaggctcaagcgaaaggaggaggaaccagccaagcc 139 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | Sbjct: 73 caatctgaaggagaagttctcgacgaggcttaagcgaaaggaggaggaaccagccaaggc 132 Query: 140 aatagcccacccacctcggatgcataatcttggcgaggagatacgtttactggtgcattc 199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 133 aatagcccacccacctcggatgcataatcttggcgaggagatacgtttactggtgcattc 192 Query: 200 gcaatcctttgaaaaggcctacaatactgcagcaccatttcttttcgccagtttgggggc 259 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 193 gcaatcctttgaaaaggcctacagtactgcagcaccatttcttttcgccagtttgggggc 252 Query: 260 gtggccgggctattggctgttcagaggaatggattaccatgttcatcgatcgcacattcc 319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 253 gtggccgggctattggctgttcagaggaatggattaccatgttcatcgatcgcacattcc 312 Query: 320 attgcccatctatataagacagacctactatcaagccaaagtggtgcaacttttcattat 379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 313 attgcccatctatataagacagacctactatcaagccaaagtggtgcaacttttcattat 372 Query: 380 cttggccggcacatatacagttttcagaaacgccagtcgcttgcgtttgatgaatgcaaa 439 | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 373 catggccggcacatataccgttttcagaaacgccagtcgcttgcgtttgatgaatgcaaa 432 Query: 440 tagagtggcgaagtcttcttgaaagccttcaaaaatcatgcaatt 484 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 433 tagagtggcgaagtcttcttgaaagccttcaaaaatcatgcaatt 477 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,623 Number of Sequences: 18737 Number of extensions: 11623 Number of successful extensions: 311 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 310 Number of HSP's gapped (non-prelim): 1 length of query: 484 length of database: 41,270,998 effective HSP length: 17 effective length of query: 467 effective length of database: 40,952,469 effective search space: 19124803023 effective search space used: 19124803023 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945981|AI945981 bs19b03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs19b03 5', mRNA sequence. (485 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value 312-RA feature: mRNA loc=3L:join(1331768..1332100,1332158..13324... 507 e-143 >312-RA feature: mRNA loc=3L:join(1331768..1332100,1332158..1332418, 1332482..1333482);ID=FBan0009166;gene_id=FBgn0029514;gen e_sym=312;sym=CG9166;scaffold=AE003471;len=1595 Length = 1595 Score = 507 bits (256), Expect = e-143 Identities = 259/260 (99%) Strand = Plus / Minus Query: 226 cccaagtccatggccatccaatcccggctcttatcgccctcgatgcgcggcaatatgtca 285 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 595 cccaagtccatggccatccaatcccggctcttatcgccctcgatgcgcggcaatatgtca 536 Query: 286 cccttgccccgcttgatcttgaacattcggcgcacgaactccgccgtggacagcatgtgt 345 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 535 cccttgccccgcttgatcttgaacattcggcgcacgaactccgcggtggacagcatgtgt 476 Query: 346 cggtaactgcgaccactgcaaaccaccaggtggtcaacgtacttcaggttctccggcacg 405 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 475 cggtaactgcgaccactgcaaaccaccaggtggtcaacgtacttcaggttctccggcacg 416 Query: 406 tagcagacgaatatgtcgtccacattctccttgcggagcagctccaccaagtcctcaacg 465 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 415 tagcagacgaatatgtcgtccacattctccttgcggagcagctccaccaagtcctcaacg 356 Query: 466 tcgaacactccgcgaacacc 485 |||||||||||||||||||| Sbjct: 355 tcgaacactccgcgaacacc 336 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,671 Number of Sequences: 18737 Number of extensions: 11671 Number of successful extensions: 314 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 312 Number of HSP's gapped (non-prelim): 2 length of query: 485 length of database: 41,270,998 effective HSP length: 17 effective length of query: 468 effective length of database: 40,952,469 effective search space: 19165755492 effective search space used: 19165755492 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945983|AI945983 bs19b07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs19b07 5', mRNA sequence. (488 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG18811-RA feature: mRNA loc=3L:complement(18617198..18620067,18... 874 0.0 >CG18811-RA feature: mRNA loc=3L:complement(18617198..18620067,18620147..18620313, 18620369..18620551, 18621510..18622068);ID=FBan0018811;gene_id=FBgn0042134;ge ne_sym=CG18811;sym=CG18811;scaffold=AE003519;len=3779 Length = 3779 Score = 874 bits (441), Expect = 0.0 Identities = 447/449 (99%) Strand = Plus / Plus Query: 40 cagaaccagtcgcaacgcatgccactcgggctggagaacaaaaactgagcatacaatacg 99 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3017 cagaaccagtcgcaacgcatgccactcgggctggagaacaaaaactgagcatacaatacg 3076 Query: 100 tattaaccccgcaaacaaaacacacatacaattcatgcaaaccataaacacaacctccat 159 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3077 tattaaccccgcaaacaaaacacacatacaattcatgcaaaccataaacacaacctccat 3136 Query: 160 acagaaaacaaggaaaccaatcatcaacatgcaagtaatggccacgtagacgtacaatta 219 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3137 acagaaaacaaggaaaccaatcatcaacatgcaagtaatggccacgtagacgtacaatta 3196 Query: 220 ttattacgcaaaccactctcaaccataagaaatgaaaatctatcaaaaagaatcctttat 279 || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 3197 ttgttacgcaaaccactctcaaccataagaaatggaaatctatcaaaaagaatcctttat 3256 Query: 280 aacgcaactagggaatcgaaaatgaagccgacacacaaatcaattcgtgcgcatttttca 339 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3257 aacgcaactagggaatcgaaaatgaagccgacacacaaatcaattcgtgcgcatttttca 3316 Query: 340 atacgatttatacctatttcccttgattttggtttattcgataatgtattaataataaaa 399 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3317 atacgatttatacctatttcccttgattttggtttattcgataatgtattaataataaaa 3376 Query: 400 caaaatagttgttagaaacacgaaagaattacaactaaatacaggaaagtaagcgctcca 459 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3377 caaaatagttgttagaaacacgaaagaattacaactaaatacaggaaagtaagcgctcca 3436 Query: 460 agggtttctaaaactcccagacaggatag 488 ||||||||||||||||||||||||||||| Sbjct: 3437 agggtttctaaaactcccagacaggatag 3465 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,461 Number of Sequences: 18737 Number of extensions: 11461 Number of successful extensions: 252 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 251 Number of HSP's gapped (non-prelim): 1 length of query: 488 length of database: 41,270,998 effective HSP length: 17 effective length of query: 471 effective length of database: 40,952,469 effective search space: 19288612899 effective search space used: 19288612899 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945993|AI945993 bs19c08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs19c08 5', mRNA sequence. (473 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32161-RA feature: mRNA loc=3L:16795107..16795875;ID=FBan003216... 892 0.0 >CG32161-RA feature: mRNA loc=3L:16795107..16795875;ID=FBan0032161;gene_id=FBgn005 2161;gene_sym=CG32161;sym=CG32161;scaffold=AE003526;len= 769 Length = 769 Score = 892 bits (450), Expect = 0.0 Identities = 456/458 (99%) Strand = Plus / Minus Query: 16 atagcaccaattttaataccaaagtgggttaagcatttgactaagacgggaattggacat 75 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 769 atagcaccaattttaataccaaagtgggttaagcatttgactaagacgggaattggacat 710 Query: 76 gtcttccccctcgacgtcgttcagcctgtagccttgaagtgtcagatccgacaactgcga 135 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 709 gtcttccccctcgacgtcgttcagcctgtagccttgaagtgtcagatccgacaactgcga 650 Query: 136 ttcgctaatgtggaagaggacaaacgcctctgccagcacatcggatcgattgggccacag 195 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 649 ttcgcttatgtggaagaggacaaacgcctctgccagcacatcggatcgattgggccacag 590 Query: 196 taggactcgcaccgctgtgcgaaactcatcgattgcctccttgatcagctgctgcgcctc 255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 589 taggactcgcaccgctgtgcgaaactcatcgattgcctccttgatcagctgctgcgcctc 530 Query: 256 gaacagattggcgagtggcgtcatcattctttcgcccaactcagactgcttagcctgcac 315 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 529 gaacagattggcgagtggcgtcatcattctttcgcccaactcagactgcttagcctgcac 470 Query: 316 tttgagagcctgctctagttgcctgaccagccgcatgaagacgaatctgcggtaacgatc 375 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 469 tttgagagcctgctctagttgcctgaccagccgcatgaagacgaatctgcggtaacgatc 410 Query: 376 ttcaaaatactgtcgcggcatatcaaaccgactcattttccgctgaaccaaggcagagaa 435 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 409 ttcaaaatactgtcgcggcatatcaaaccgactcattttccgctgaaccaaggcagagaa 350 Query: 436 gataaagccatccacgcacgagcccagcacactaacgc 473 ||||||||||||||| |||||||||||||||||||||| Sbjct: 349 gataaagccatccacacacgagcccagcacactaacgc 312 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9455 Number of Sequences: 18737 Number of extensions: 9455 Number of successful extensions: 184 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 183 Number of HSP's gapped (non-prelim): 1 length of query: 473 length of database: 41,270,998 effective HSP length: 17 effective length of query: 456 effective length of database: 40,952,469 effective search space: 18674325864 effective search space used: 18674325864 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945996|AI945996 bs19c11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs19c11 5', mRNA sequence. (481 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG11109-RB feature: mRNA loc=3L:join(22789484..22789624,22789713... 924 0.0 CG11109-RA feature: mRNA loc=3L:22789536..22791001;ID=FBan001110... 924 0.0 >CG11109-RB feature: mRNA loc=3L:join(22789484..22789624, 22789713..22791001);ID=FBan0011109;gene_id=FBgn0037200;g ene_sym=CG11109;sym=CG11109;scaffold=AE003599;len=1430 Length = 1430 Score = 924 bits (466), Expect = 0.0 Identities = 472/474 (99%) Strand = Plus / Minus Query: 8 cacgggtgcagatggagcgtccgctgccactgcctcggtggagttaaaaacatgcgccgt 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 969 cacgggtgcagatggagcgtccgctgccactgcctcggtggagttaaaaacatgcgccgt 910 Query: 68 tatgcttttgtagtgtcccaatttgggcagcatgctgcggacgcgactggccgaattgtc 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 909 tatgcttttgtagtgtcccaatttgggcagcatgctgcggacgcgactggccgaattgtc 850 Query: 128 tagggccaccacagatccccgatcgcccatcaactcggctatgtggcttgttttgttacc 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 849 tagggccaccacagatccccgatcgcccatcaactcggctatgtggcttgttttgttacc 790 Query: 188 cggagcggcacacatgtccagtatgcgctcgccgggctgcggatccaggacacggacgca 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 789 cggagcggcacacatgtccagtatgcgctcgccgggctgcggatccaggacacggacgca 730 Query: 248 aacaatagaaggcaggttttgcaacaggccgtcttcgctgcttagatcccccagcgtggg 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 729 aacaatagaaggcaggttttgcaacaggccgtcttcgctgcttagatcccccagcgtggg 670 Query: 308 cactccgctgacgttggactgcatttccacggccactccagaggcggaattctccgcgtt 367 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 669 cactccgctgacgttggactgcatttccacggccactccagaggcgggcttctccgcgtt 610 Query: 368 gttgaacagctgataccgctgcattaacaccttgcctgtacccaggaaaaccttatttgg 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 609 gttgaacagctgataccgctgcattaacaccttgcctgtacccaggaaaaccttatttgg 550 Query: 428 gctttcgtaccgcttgaccgtcccgcgcttgcattttccatccagatctgcgta 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 549 gctttcgtaccgcttgaccgtcccgcgcttgcattttccatccagatctgcgta 496 >CG11109-RA feature: mRNA loc=3L:22789536..22791001;ID=FBan0011109;gene_id=FBgn0037 200;gene_sym=CG11109;sym=CG11109;scaffold=AE003599;len=14 66 Length = 1466 Score = 924 bits (466), Expect = 0.0 Identities = 472/474 (99%) Strand = Plus / Minus Query: 8 cacgggtgcagatggagcgtccgctgccactgcctcggtggagttaaaaacatgcgccgt 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1005 cacgggtgcagatggagcgtccgctgccactgcctcggtggagttaaaaacatgcgccgt 946 Query: 68 tatgcttttgtagtgtcccaatttgggcagcatgctgcggacgcgactggccgaattgtc 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 945 tatgcttttgtagtgtcccaatttgggcagcatgctgcggacgcgactggccgaattgtc 886 Query: 128 tagggccaccacagatccccgatcgcccatcaactcggctatgtggcttgttttgttacc 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 885 tagggccaccacagatccccgatcgcccatcaactcggctatgtggcttgttttgttacc 826 Query: 188 cggagcggcacacatgtccagtatgcgctcgccgggctgcggatccaggacacggacgca 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 825 cggagcggcacacatgtccagtatgcgctcgccgggctgcggatccaggacacggacgca 766 Query: 248 aacaatagaaggcaggttttgcaacaggccgtcttcgctgcttagatcccccagcgtggg 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 765 aacaatagaaggcaggttttgcaacaggccgtcttcgctgcttagatcccccagcgtggg 706 Query: 308 cactccgctgacgttggactgcatttccacggccactccagaggcggaattctccgcgtt 367 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 705 cactccgctgacgttggactgcatttccacggccactccagaggcgggcttctccgcgtt 646 Query: 368 gttgaacagctgataccgctgcattaacaccttgcctgtacccaggaaaaccttatttgg 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 645 gttgaacagctgataccgctgcattaacaccttgcctgtacccaggaaaaccttatttgg 586 Query: 428 gctttcgtaccgcttgaccgtcccgcgcttgcattttccatccagatctgcgta 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 585 gctttcgtaccgcttgaccgtcccgcgcttgcattttccatccagatctgcgta 532 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,289 Number of Sequences: 18737 Number of extensions: 10289 Number of successful extensions: 195 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 193 Number of HSP's gapped (non-prelim): 2 length of query: 481 length of database: 41,270,998 effective HSP length: 17 effective length of query: 464 effective length of database: 40,952,469 effective search space: 19001945616 effective search space used: 19001945616 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946002|AI946002 bs19d08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs19d08 5', mRNA sequence. (437 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Indy-RC feature: mRNA loc=3L:complement(18777511..18778392,18778... 755 0.0 Indy-RB feature: mRNA loc=3L:complement(18777511..18778392,18778... 755 0.0 Indy-RA feature: mRNA loc=3L:complement(18777511..18778392,18778... 755 0.0 >Indy-RC feature: mRNA loc=3L:complement(18777511..18778392,18778458..18778836, 18779155..18779613,18779719..18779907,18779972..18780120, 18780190..18780306,18780374..18780500,18780826..18780863, 18790031..18790289);ID=FBan0003979;gene_id=FBgn0036816;ge ne_sym=Indy;sym=CG3979;scaffold=AE003519;len=2599 Length = 2599 Score = 755 bits (381), Expect = 0.0 Identities = 384/385 (99%) Strand = Plus / Minus Query: 34 attggcgtttgagctttttattatttaatattttttacaaactatataaaacataaatca 93 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2599 attgtcgtttgagctttttattatttaatattttttacaaactatataaaacataaatca 2540 Query: 94 tctgaaaatgtacacagtatcatttaagcttagcctaccgctatttgtgtgttcattttg 153 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2539 tctgaaaatgtacacagtatcatttaagcttagcctaccgctatttgtgtgttcattttg 2480 Query: 154 gttcgcaatgaagtattgagtgagttgttcatttaaaaatttttacaagttgaaaaacat 213 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2479 gttcgcaatgaagtattgagtgagttgttcatttaaaaatttttacaagttgaaaaacat 2420 Query: 214 gtatgaatatgtaagttctctcagtctagttatttaaaatattagcaggccagggctgcc 273 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2419 gtatgaatatgtaagttctctcagtctagttatttaaaatattagcaggccagggctgcc 2360 Query: 274 attgaacaaactgttctaacttttccaaatcttttccatttttatgctaaatgcaacaat 333 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2359 attgaacaaactgttctaacttttccaaatcttttccatttttatgctaaatgcaacaat 2300 Query: 334 taagtaacattaatttgtatttaaatatttagctgagtgcgtagaccaggtgttcaattc 393 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2299 taagtaacattaatttgtatttaaatatttagctgagtgcgtagaccaggtgttcaattc 2240 Query: 394 ctgattaacagtatattgcgatacg 418 ||||||||||||||||||||||||| Sbjct: 2239 ctgattaacagtatattgcgatacg 2215 >Indy-RB feature: mRNA loc=3L:complement(18777511..18778392,18778458..18778836, 18779155..18779613,18779719..18779907,18779972..18780120, 18780190..18780306,18780374..18780500,18780826..18780863, 18794915..18795139);ID=FBan0003979;gene_id=FBgn0036816;ge ne_sym=Indy;sym=CG3979;scaffold=AE003519;len=2565 Length = 2565 Score = 755 bits (381), Expect = 0.0 Identities = 384/385 (99%) Strand = Plus / Minus Query: 34 attggcgtttgagctttttattatttaatattttttacaaactatataaaacataaatca 93 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2565 attgtcgtttgagctttttattatttaatattttttacaaactatataaaacataaatca 2506 Query: 94 tctgaaaatgtacacagtatcatttaagcttagcctaccgctatttgtgtgttcattttg 153 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2505 tctgaaaatgtacacagtatcatttaagcttagcctaccgctatttgtgtgttcattttg 2446 Query: 154 gttcgcaatgaagtattgagtgagttgttcatttaaaaatttttacaagttgaaaaacat 213 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2445 gttcgcaatgaagtattgagtgagttgttcatttaaaaatttttacaagttgaaaaacat 2386 Query: 214 gtatgaatatgtaagttctctcagtctagttatttaaaatattagcaggccagggctgcc 273 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2385 gtatgaatatgtaagttctctcagtctagttatttaaaatattagcaggccagggctgcc 2326 Query: 274 attgaacaaactgttctaacttttccaaatcttttccatttttatgctaaatgcaacaat 333 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2325 attgaacaaactgttctaacttttccaaatcttttccatttttatgctaaatgcaacaat 2266 Query: 334 taagtaacattaatttgtatttaaatatttagctgagtgcgtagaccaggtgttcaattc 393 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2265 taagtaacattaatttgtatttaaatatttagctgagtgcgtagaccaggtgttcaattc 2206 Query: 394 ctgattaacagtatattgcgatacg 418 ||||||||||||||||||||||||| Sbjct: 2205 ctgattaacagtatattgcgatacg 2181 >Indy-RA feature: mRNA loc=3L:complement(18777511..18778392,18778458..18778836, 18779155..18779613,18779719..18779907,18779972..18780120, 18780190..18780306,18780374..18780500,18780826..18780863, 18789252..18789374);ID=FBan0003979;gene_id=FBgn0036816;ge ne_sym=Indy;sym=CG3979;scaffold=AE003519;len=2463 Length = 2463 Score = 755 bits (381), Expect = 0.0 Identities = 384/385 (99%) Strand = Plus / Minus Query: 34 attggcgtttgagctttttattatttaatattttttacaaactatataaaacataaatca 93 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2463 attgtcgtttgagctttttattatttaatattttttacaaactatataaaacataaatca 2404 Query: 94 tctgaaaatgtacacagtatcatttaagcttagcctaccgctatttgtgtgttcattttg 153 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2403 tctgaaaatgtacacagtatcatttaagcttagcctaccgctatttgtgtgttcattttg 2344 Query: 154 gttcgcaatgaagtattgagtgagttgttcatttaaaaatttttacaagttgaaaaacat 213 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2343 gttcgcaatgaagtattgagtgagttgttcatttaaaaatttttacaagttgaaaaacat 2284 Query: 214 gtatgaatatgtaagttctctcagtctagttatttaaaatattagcaggccagggctgcc 273 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2283 gtatgaatatgtaagttctctcagtctagttatttaaaatattagcaggccagggctgcc 2224 Query: 274 attgaacaaactgttctaacttttccaaatcttttccatttttatgctaaatgcaacaat 333 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2223 attgaacaaactgttctaacttttccaaatcttttccatttttatgctaaatgcaacaat 2164 Query: 334 taagtaacattaatttgtatttaaatatttagctgagtgcgtagaccaggtgttcaattc 393 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2163 taagtaacattaatttgtatttaaatatttagctgagtgcgtagaccaggtgttcaattc 2104 Query: 394 ctgattaacagtatattgcgatacg 418 ||||||||||||||||||||||||| Sbjct: 2103 ctgattaacagtatattgcgatacg 2079 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,994 Number of Sequences: 18737 Number of extensions: 10994 Number of successful extensions: 1038 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1035 Number of HSP's gapped (non-prelim): 3 length of query: 437 length of database: 41,270,998 effective HSP length: 17 effective length of query: 420 effective length of database: 40,952,469 effective search space: 17200036980 effective search space used: 17200036980 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946004|AI946004 bs19d10.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs19d10 5', mRNA sequence. (478 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG5794-RE feature: mRNA loc=3R:complement(20456687..20457011,204... 714 0.0 CG5794-RD feature: mRNA loc=3R:complement(20452837..20453576,204... 714 0.0 CG5794-RB feature: mRNA loc=3R:complement(20452837..20453576,204... 714 0.0 >CG5794-RE feature: mRNA loc=3R:complement(20456687..20457011,20457078..20457348, 20457410..20457597,20457656..20457779,20457841..20458493, 20458552..20458738,20458792..20462064,20462124..20463010, 20463072..20463981,20464058..20464769,20464887..20465924, 20466023..20466288);ID=FBan0005794;gene_id=FBgn0039214;ge ne_sym=CG5794;sym=CG5794;scaffold=AE003748;len=8834 Length = 8834 Score = 714 bits (360), Expect = 0.0 Identities = 360/360 (100%) Strand = Plus / Plus Query: 8 gcggaatgtgagcctgttctgcaactcgggcggctttggcgccatgtcgctgtgcttcga 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 946 gcggaatgtgagcctgttctgcaactcgggcggctttggcgccatgtcgctgtgcttcga 1005 Query: 68 acatcccgatctgccagtgtccaccgctcactcgatgaccgctgccgtctcaaatgtgaa 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1006 acatcccgatctgccagtgtccaccgctcactcgatgaccgctgccgtctcaaatgtgaa 1065 Query: 128 actttggctgaactatcactgtaatactcagctcttcgtgccgctgcgaagtcggatact 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1066 actttggctgaactatcactgtaatactcagctcttcgtgccgctgcgaagtcggatact 1125 Query: 188 gcagtacatgtgcaagctgtcggatcagagcctccgatctgccgcaacccgcgcgatggc 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1126 gcagtacatgtgcaagctgtcggatcagagcctccgatctgccgcaacccgcgcgatggc 1185 Query: 248 cgattttgtgtggtcctctatgcgagacccactggatgttgctgtcaacttcgacaccga 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1186 cgattttgtgtggtcctctatgcgagacccactggatgttgctgtcaacttcgacaccga 1245 Query: 308 aggattggccctggcctttaagtacttcacatcgaccacgctaaccatgcgactggcagg 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1246 aggattggccctggcctttaagtacttcacatcgaccacgctaaccatgcgactggcagg 1305 >CG5794-RD feature: mRNA loc=3R:complement(20452837..20453576,20453677..20454014, 20454083..20455052,20455120..20455472,20455534..20455720, 20455799..20455974,20456038..20456143,20456203..20456602, 20456829..20457011,20457078..20457348,20457410..20457597, 20457656..20457779,20457841..20458493,20458552..20458738, 20458792..20462064,20462124..20463010,20463072..20463981, 20464058..20464769,20464887..20465924, 20466023..20466288);ID=FBan0005794;gene_id=FBgn0039214;ge ne_sym=CG5794;sym=CG5794;scaffold=AE003748;len=11962 Length = 11962 Score = 714 bits (360), Expect = 0.0 Identities = 360/360 (100%) Strand = Plus / Plus Query: 8 gcggaatgtgagcctgttctgcaactcgggcggctttggcgccatgtcgctgtgcttcga 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 946 gcggaatgtgagcctgttctgcaactcgggcggctttggcgccatgtcgctgtgcttcga 1005 Query: 68 acatcccgatctgccagtgtccaccgctcactcgatgaccgctgccgtctcaaatgtgaa 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1006 acatcccgatctgccagtgtccaccgctcactcgatgaccgctgccgtctcaaatgtgaa 1065 Query: 128 actttggctgaactatcactgtaatactcagctcttcgtgccgctgcgaagtcggatact 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1066 actttggctgaactatcactgtaatactcagctcttcgtgccgctgcgaagtcggatact 1125 Query: 188 gcagtacatgtgcaagctgtcggatcagagcctccgatctgccgcaacccgcgcgatggc 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1126 gcagtacatgtgcaagctgtcggatcagagcctccgatctgccgcaacccgcgcgatggc 1185 Query: 248 cgattttgtgtggtcctctatgcgagacccactggatgttgctgtcaacttcgacaccga 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1186 cgattttgtgtggtcctctatgcgagacccactggatgttgctgtcaacttcgacaccga 1245 Query: 308 aggattggccctggcctttaagtacttcacatcgaccacgctaaccatgcgactggcagg 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1246 aggattggccctggcctttaagtacttcacatcgaccacgctaaccatgcgactggcagg 1305 >CG5794-RB feature: mRNA loc=3R:complement(20452837..20453576,20453677..20454014, 20454083..20455052,20455120..20455472,20455534..20455720, 20455799..20455974,20456038..20456143,20456203..20456602, 20456829..20457011,20457078..20457348,20457410..20457597, 20457656..20457779,20457841..20458493,20458552..20458738, 20458792..20462064,20462124..20463010,20463072..20463981, 20464058..20464769,20464887..20465742, 20466076..20466330);ID=FBan0005794;gene_id=FBgn0039214;ge ne_sym=CG5794;sym=CG5794;scaffold=AE003748;len=11769 Length = 11769 Score = 714 bits (360), Expect = 0.0 Identities = 360/360 (100%) Strand = Plus / Plus Query: 8 gcggaatgtgagcctgttctgcaactcgggcggctttggcgccatgtcgctgtgcttcga 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 753 gcggaatgtgagcctgttctgcaactcgggcggctttggcgccatgtcgctgtgcttcga 812 Query: 68 acatcccgatctgccagtgtccaccgctcactcgatgaccgctgccgtctcaaatgtgaa 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 813 acatcccgatctgccagtgtccaccgctcactcgatgaccgctgccgtctcaaatgtgaa 872 Query: 128 actttggctgaactatcactgtaatactcagctcttcgtgccgctgcgaagtcggatact 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 873 actttggctgaactatcactgtaatactcagctcttcgtgccgctgcgaagtcggatact 932 Query: 188 gcagtacatgtgcaagctgtcggatcagagcctccgatctgccgcaacccgcgcgatggc 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 933 gcagtacatgtgcaagctgtcggatcagagcctccgatctgccgcaacccgcgcgatggc 992 Query: 248 cgattttgtgtggtcctctatgcgagacccactggatgttgctgtcaacttcgacaccga 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 993 cgattttgtgtggtcctctatgcgagacccactggatgttgctgtcaacttcgacaccga 1052 Query: 308 aggattggccctggcctttaagtacttcacatcgaccacgctaaccatgcgactggcagg 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1053 aggattggccctggcctttaagtacttcacatcgaccacgctaaccatgcgactggcagg 1112 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,685 Number of Sequences: 18737 Number of extensions: 10685 Number of successful extensions: 223 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 220 Number of HSP's gapped (non-prelim): 3 length of query: 478 length of database: 41,270,998 effective HSP length: 17 effective length of query: 461 effective length of database: 40,952,469 effective search space: 18879088209 effective search space used: 18879088209 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946006|AI946006 bs19e04.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs19e04 5', mRNA sequence. (466 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31870-RC feature: mRNA loc=2L:join(10782651..10782776,10782825... 888 0.0 CG31870-RA feature: mRNA loc=2L:join(10782651..10782776,10782836... 632 0.0 >CG31870-RC feature: mRNA loc=2L:join(10782651..10782776, 10782825..10783185);ID=FBan0031870;gene_id=FBgn0051870;g ene_sym=CG31870;sym=CG31870;scaffold=AE003630;len=487 Length = 487 Score = 888 bits (448), Expect = 0.0 Identities = 457/460 (99%) Strand = Plus / Plus Query: 7 gaacacataccttttttgcttcccaaaaaatttatttgttctccaaatctaagatattta 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8 gaacacataccttttttgcttcccaaaaaatttatttgttctccaaatctaagatattta 67 Query: 67 aattagtattgttgaaattagccacagcgaataatttgtgaacatgtctaggaactatgt 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 68 aattagtattgttgaaattagccacagcgaataatttgtgaacatgtctaggaactatgt 127 Query: 127 attttgtaaggacctggacctggagcctacatgctacccagcagttttggacaaaaagga 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 128 attttgtaaggacctggacctggagcctacatgctacccagcagttttggacaaaaagga 187 Query: 187 cctcagttctccttcggccgcagaattgaccgcaaaagagatgaaaaacctggtccgggt 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 188 cctcagttctccttcggccgcagaattgaccgcaaaagagatgaaaaacctggtccgggt 247 Query: 247 cctgctgcttataaggtggataaagtgacacgctacggaaacgcggagggtccacagttt 306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 248 cctgctgcttataaggtggataaagtgacacgctacggaaacgcggagggtccacagttt 307 Query: 307 tccatgtatgttaggaacttcaagatgaaaccccttcccattcgattgtcttgaagattc 366 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 308 tccatgtatgttaggaactccaagatgaaaccccttcccattcgattgtcttgaagattc 367 Query: 367 gatcctgatcccgtatttagtaatgaagtttctaaaacagtcgatattgtgatgtacata 426 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 368 gatcctgattccgtatttagtaatgaagtttctaaaacagtcgatattgtgatgtacata 427 Query: 427 catagcggcgaaatatgcaattaaatctataaatatttat 466 |||||||||||||||||||| ||||||||||||||||||| Sbjct: 428 catagcggcgaaatatgcaagtaaatctataaatatttat 467 >CG31870-RA feature: mRNA loc=2L:join(10782651..10782776, 10782836..10783185);ID=FBan0031870;gene_id=FBgn0051870;g ene_sym=CG31870;sym=CG31870;scaffold=AE003630;len=476 Length = 476 Score = 632 bits (319), Expect = 0.0 Identities = 328/331 (99%) Strand = Plus / Plus Query: 136 ggacctggacctggagcctacatgctacccagcagttttggacaaaaaggacctcagttc 195 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 126 ggacctggacctggagcctacatgctacccagcagttttggacaaaaaggacctcagttc 185 Query: 196 tccttcggccgcagaattgaccgcaaaagagatgaaaaacctggtccgggtcctgctgct 255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 186 tccttcggccgcagaattgaccgcaaaagagatgaaaaacctggtccgggtcctgctgct 245 Query: 256 tataaggtggataaagtgacacgctacggaaacgcggagggtccacagttttccatgtat 315 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 246 tataaggtggataaagtgacacgctacggaaacgcggagggtccacagttttccatgtat 305 Query: 316 gttaggaacttcaagatgaaaccccttcccattcgattgtcttgaagattcgatcctgat 375 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 306 gttaggaactccaagatgaaaccccttcccattcgattgtcttgaagattcgatcctgat 365 Query: 376 cccgtatttagtaatgaagtttctaaaacagtcgatattgtgatgtacatacatagcggc 435 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 366 tccgtatttagtaatgaagtttctaaaacagtcgatattgtgatgtacatacatagcggc 425 Query: 436 gaaatatgcaattaaatctataaatatttat 466 ||||||||||| ||||||||||||||||||| Sbjct: 426 gaaatatgcaagtaaatctataaatatttat 456 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9801 Number of Sequences: 18737 Number of extensions: 9801 Number of successful extensions: 228 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 225 Number of HSP's gapped (non-prelim): 3 length of query: 466 length of database: 41,270,998 effective HSP length: 17 effective length of query: 449 effective length of database: 40,952,469 effective search space: 18387658581 effective search space used: 18387658581 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946009|AI946009 bs19e08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs19e08 5', mRNA sequence. (483 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31909-RA feature: mRNA loc=2L:join(7249802..7249868,7249936..7... 789 0.0 >CG31909-RA feature: mRNA loc=2L:join(7249802..7249868, 7249936..7250346);ID=FBan0031909;gene_id=FBgn0051909;gen e_sym=CG31909;sym=CG31909;scaffold=AE003616;len=478 Length = 478 Score = 789 bits (398), Expect = 0.0 Identities = 452/476 (94%), Gaps = 8/476 (1%) Strand = Plus / Plus Query: 8 gtgaggttcgatcttaacatnnnnnnntatttttctgattttaaacaaaataagattctt 67 |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 7 gtgaggttcgatcttaacataaaaaaatatttttctgattttaaacaaaataagattctt 66 Query: 68 gacaacaaggtgctgtcaccatcaccaacnnnnnnnntggaaccctcgttttccaatact 127 | |||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 67 g--------gtgctgtcaccatcaccaacaaaaaaaatggaaccctcgttttccaatact 118 Query: 128 aacaaatcggaacttcagaaccaactacgagtagagagagctctgcaagataaatattta 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 119 aacaaatcggaacttcagaaccaactacgagtagagagagctctgcaagataaatattta 178 Query: 188 aaagaattttcttcaatggcggatgagctaaatcacttaattgatggcactactcccagc 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 179 aaagaattttcttcaatggcggatgagctaaatcacttaattgatggcactactcccagc 238 Query: 248 catattgagacttatgaatatttggacactgtcgacactgaaagcggtcgttctctcgaa 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 239 catattgagacttatgaatatttggacactgtcgacactgaaagcggtcgttctctcgaa 298 Query: 308 gaagagaaaaagttaactaactttttctataaattgaagagcgatctacagaaattatat 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 299 gaagagaaaaagttaactaactttttctataaattgaagagcgatctacagaaattatat 358 Query: 368 agagaaatcgtagagaacccaaaatatttaaacgaaatcagggattcaactattataagg 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 359 agagaaatcgtagagaacccaaaatatttaaacgaaatcagggattcaactattataagg 418 Query: 428 gacaatatagatttactggatgaagtagacgcttttgaaagttcgatgaatatgct 483 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 419 gacaatatagatttactggatgaagtagacgcttttgaaggttcgatgaatatgct 474 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,022 Number of Sequences: 18737 Number of extensions: 11022 Number of successful extensions: 257 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 252 Number of HSP's gapped (non-prelim): 4 length of query: 483 length of database: 41,270,998 effective HSP length: 17 effective length of query: 466 effective length of database: 40,952,469 effective search space: 19083850554 effective search space used: 19083850554 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946011|AI946011 bs19e10.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs19e10 5', mRNA sequence. (480 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7156 Number of Sequences: 18737 Number of extensions: 7156 Number of successful extensions: 141 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 141 Number of HSP's gapped (non-prelim): 0 length of query: 480 length of database: 41,270,998 effective HSP length: 17 effective length of query: 463 effective length of database: 40,952,469 effective search space: 18960993147 effective search space used: 18960993147 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946012|AI946012 bs19e11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs19e11 5', mRNA sequence. (482 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Pif2-RA feature: mRNA loc=3R:join(2374759..2374867,2374929..2375... 942 0.0 >Pif2-RA feature: mRNA loc=3R:join(2374759..2374867, 2374929..2375706);ID=FBan0031483;gene_id=FBgn0046873;gen e_sym=Pif2;sym=CG31483;scaffold=AE003674;len=887 Length = 887 Score = 942 bits (475), Expect = 0.0 Identities = 475/475 (100%) Strand = Plus / Plus Query: 8 cacaaatcaaattcaagccccgggctcgagatctctgacgggttcaagcacgaatcgaag 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 62 cacaaatcaaattcaagccccgggctcgagatctctgacgggttcaagcacgaatcgaag 121 Query: 68 atgtgcagcccctgctgtggatcctgctgcggaccttgctgctccccctgctgcagccct 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 122 atgtgcagcccctgctgtggatcctgctgcggaccttgctgctccccctgctgcagccct 181 Query: 128 tgttgtccaccgtgctgcaatgactgctgcgggtcctgctgcagtccgtgttgcggaccc 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 182 tgttgtccaccgtgctgcaatgactgctgcgggtcctgctgcagtccgtgttgcggaccc 241 Query: 188 tgttgcagcccctgctgcggaccctgctgcagcccctgctgcagtccttgctgcaccccc 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 242 tgttgcagcccctgctgcggaccctgctgcagcccctgctgcagtccttgctgcaccccc 301 Query: 248 tgttgcaccccttgctgcacgccgtgctgcaagtgttgcacaccctgctgcgtgccgtgt 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 302 tgttgcaccccttgctgcacgccgtgctgcaagtgttgcacaccctgctgcgtgccgtgt 361 Query: 308 tgcacaccctgctgcaccccctgctgcactccctgttgcaccccttgctgcagtccgtgc 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 362 tgcacaccctgctgcaccccctgctgcactccctgttgcaccccttgctgcagtccgtgc 421 Query: 368 tgcggtccgtgctgcagcccctgctgctctccttgcggagggtcaaagtgcaagtgatcc 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 422 tgcggtccgtgctgcagcccctgctgctctccttgcggagggtcaaagtgcaagtgatcc 481 Query: 428 acggcagcgaatacggattcgttttcggaggcaggagctaggcgcaaatgccacc 482 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 482 acggcagcgaatacggattcgttttcggaggcaggagctaggcgcaaatgccacc 536 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,975 Number of Sequences: 18737 Number of extensions: 13975 Number of successful extensions: 423 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 386 Number of HSP's gapped (non-prelim): 1 length of query: 482 length of database: 41,270,998 effective HSP length: 17 effective length of query: 465 effective length of database: 40,952,469 effective search space: 19042898085 effective search space used: 19042898085 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946013|AI946013 bs19f03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs19f03 5', mRNA sequence. (309 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31709-RA feature: mRNA loc=2L:complement(9570765..9571260,9571... 595 e-170 >CG31709-RA feature: mRNA loc=2L:complement(9570765..9571260,9571322..9571676, 9571740..9571867);ID=FBan0031709;gene_id=FBgn0051709;gen e_sym=CG31709;sym=CG31709;scaffold=AE003625;len=979 Length = 979 Score = 595 bits (300), Expect = e-170 Identities = 303/304 (99%) Strand = Plus / Plus Query: 6 agggattttcctcaacaacaagtttaaattcgttagtcaaccaaaatcgtgtaacaatgg 65 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19 agggattttcctcaacaacaagtttaaattcgttagtcaaccaaaatcgtgtaacaatgg 78 Query: 66 gtgcttgtcgccctagaaaatgtagtgcaaataaccgaactatggcaattcgtcgccgta 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79 gtgcttgtcgccctagaaaatgtagtgcaaataaccgaactatggcaattcgtcgccgta 138 Query: 126 gagctctagttaacttgctatttttgcgccgtcatttgattggacaggcacttggaatta 185 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 139 gagctctagttaacttgctatttttgcgccgtcatttgattggacaggcacttggaatta 198 Query: 186 cgaatcgggaaactccagaccttagggtaaaatcgcggcgacgcaatcgtagaaggagaa 245 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 199 cgaatcgggaaactccagaccttagggtaaaatcgcggcgacgcaatcgtagaaggagaa 258 Query: 246 tgcaattcagagtccgtacaccaagtgataatgcactgcgctcagtaaggcatcatggac 305 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 259 tgcaattcagagtccgtacaccaagtgataatgcaatgcgctcagtaaggcatcatggac 318 Query: 306 agaa 309 |||| Sbjct: 319 agaa 322 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5234 Number of Sequences: 18737 Number of extensions: 5234 Number of successful extensions: 333 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 332 Number of HSP's gapped (non-prelim): 1 length of query: 309 length of database: 41,270,998 effective HSP length: 16 effective length of query: 293 effective length of database: 40,971,206 effective search space: 12004563358 effective search space used: 12004563358 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946016|AI946016 bs19f07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs19f07 5', mRNA sequence. (487 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31816-RA feature: mRNA loc=2L:join(16520640..16520867,16521077... 846 0.0 >CG31816-RA feature: mRNA loc=2L:join(16520640..16520867, 16521077..16521349);ID=FBan0031816;gene_id=FBgn0051816;g ene_sym=CG31816;sym=CG31816;scaffold=AE003651;len=501 Length = 501 Score = 846 bits (427), Expect = 0.0 Identities = 466/480 (97%), Gaps = 1/480 (0%) Strand = Plus / Plus Query: 8 ttaatccataaatttatcgctttaggaaatgcgttttcaaaaatcttaagtttttataca 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7 ttaatccataaatttatcgctttaggaaatgcgttttcaaaaatcttaagtttttataca 66 Query: 68 ttgtcaccgacaaaatcttagtgaaaccggtataaataatcccctcatgaaatgaataag 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 67 ttgtcaccgacaaaatcttagtgaaaccggtataaataatcccctcatgaaatgaataag 126 Query: 128 cagaccaaagaatggtcgcgagctcgcctatgtaagcctaaggataatcttaccaccgaa 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 127 cagaccaaagaatggtcgcgagctcgcctatgtaagcctaaggataatcttaccaccgaa 186 Query: 188 gcgggaaaacgagaacgctttgtgccgtcctgcgagctagagtgcagtccggtatcgatg 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 187 gcgggaaaacgagaacgctttgtgccgtcctgcgagctagagtgcagtccggtatcgatg 246 Query: 248 tcgcacttgattggctgggagtacgctagaatttggctgcgcgatcgcgacgaatttgtg 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 247 tcgcacttgattggctgggagtacgctagaatttggctgcgcgatcgcgacgaatttgtg 306 Query: 308 cagcaacgcgaacgtgctgtcaaagctaaatacatcaagaatgacttcgagtggtggtta 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 307 cagcaacgcgaacgtgctgtcaaagctaaatacatcaagaatgacttcgagtggtggtta 366 Query: 368 aggctacgaaaaacatcgaaaaagttctgcaaagttggggcataaaagcgaccnnnnnnn 427 ||||| |||||||||||||||||||||||||||||||||||||| |||||| | Sbjct: 367 aggctgcgaaaaacatcgaaaaagttctgcaaagttggggcatagaagcga-caaaataa 425 Query: 428 tgaggacagcaaaattattcctattccatttttaaggggatatactgttatttaaataaa 487 |||||||||| ||||||||||||||||||||||||||| |||||| |||||| ||||||| Sbjct: 426 tgaggacagcgaaattattcctattccatttttaagggaatatacagttattaaaataaa 485 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8497 Number of Sequences: 18737 Number of extensions: 8497 Number of successful extensions: 147 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 145 Number of HSP's gapped (non-prelim): 2 length of query: 487 length of database: 41,270,998 effective HSP length: 17 effective length of query: 470 effective length of database: 40,952,469 effective search space: 19247660430 effective search space used: 19247660430 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946025|AI946025 bs19g08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs19g08 5', mRNA sequence. (486 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,726 Number of Sequences: 18737 Number of extensions: 10726 Number of successful extensions: 248 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 248 Number of HSP's gapped (non-prelim): 0 length of query: 486 length of database: 41,270,998 effective HSP length: 17 effective length of query: 469 effective length of database: 40,952,469 effective search space: 19206707961 effective search space used: 19206707961 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946028|AI946028 bs19g11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs19g11 5', mRNA sequence. (484 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31363-RH feature: mRNA loc=3R:complement(7416128..7417047,7418... 607 e-173 CG31363-RE feature: mRNA loc=3R:complement(7416128..7417047,7418... 607 e-173 CG31363-RD feature: mRNA loc=3R:complement(7416128..7417047,7418... 607 e-173 CG31363-RC feature: mRNA loc=3R:complement(7416128..7417047,7418... 607 e-173 CG31363-RB feature: mRNA loc=3R:complement(7416128..7417047,7417... 607 e-173 CG31363-RA feature: mRNA loc=3R:complement(7416128..7417047,7417... 607 e-173 >CG31363-RH feature: mRNA loc=3R:complement(7416128..7417047,7418107..7418364, 7419062..7419094,7419373..7419506, 7445444..7445674);ID=FBan0031363;gene_id=FBgn0051363;gene _sym=CG31363;sym=CG31363;scaffold=AE003692;len=1576 Length = 1576 Score = 607 bits (306), Expect = e-173 Identities = 306/306 (100%) Strand = Plus / Plus Query: 8 ccctacactcccgtatccaggtcagaaaatcgaaaggcacgaaagtaggacatgatggcc 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 931 ccctacactcccgtatccaggtcagaaaatcgaaaggcacgaaagtaggacatgatggcc 990 Query: 68 aacgaataattaagcgagagaatagcaattgctcaacgatctgcagatgcaatagtacga 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 991 aacgaataattaagcgagagaatagcaattgctcaacgatctgcagatgcaatagtacga 1050 Query: 128 tacgcttcccagatgagaattaatcaaccaattttagaaggcggcgttgcacccaaacct 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1051 tacgcttcccagatgagaattaatcaaccaattttagaaggcggcgttgcacccaaacct 1110 Query: 188 atcactaccaacaccaccaccaccccattgcaaatctgtaatttaaattccttagttggt 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1111 atcactaccaacaccaccaccaccccattgcaaatctgtaatttaaattccttagttggt 1170 Query: 248 gtaaatccatgtaacgcgtgtagccccacaaaacgacgcccgatcgcctgccctctgcaa 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1171 gtaaatccatgtaacgcgtgtagccccacaaaacgacgcccgatcgcctgccctctgcaa 1230 Query: 308 ctgcag 313 |||||| Sbjct: 1231 ctgcag 1236 >CG31363-RE feature: mRNA loc=3R:complement(7416128..7417047,7418107..7418364, 7419062..7419094,7419373..7419506,7429882..7430023, 7430326..7430491);ID=FBan0031363;gene_id=FBgn0051363;gene _sym=CG31363;sym=CG31363;scaffold=AE003692;len=1653 Length = 1653 Score = 607 bits (306), Expect = e-173 Identities = 306/306 (100%) Strand = Plus / Plus Query: 8 ccctacactcccgtatccaggtcagaaaatcgaaaggcacgaaagtaggacatgatggcc 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1008 ccctacactcccgtatccaggtcagaaaatcgaaaggcacgaaagtaggacatgatggcc 1067 Query: 68 aacgaataattaagcgagagaatagcaattgctcaacgatctgcagatgcaatagtacga 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1068 aacgaataattaagcgagagaatagcaattgctcaacgatctgcagatgcaatagtacga 1127 Query: 128 tacgcttcccagatgagaattaatcaaccaattttagaaggcggcgttgcacccaaacct 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1128 tacgcttcccagatgagaattaatcaaccaattttagaaggcggcgttgcacccaaacct 1187 Query: 188 atcactaccaacaccaccaccaccccattgcaaatctgtaatttaaattccttagttggt 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1188 atcactaccaacaccaccaccaccccattgcaaatctgtaatttaaattccttagttggt 1247 Query: 248 gtaaatccatgtaacgcgtgtagccccacaaaacgacgcccgatcgcctgccctctgcaa 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1248 gtaaatccatgtaacgcgtgtagccccacaaaacgacgcccgatcgcctgccctctgcaa 1307 Query: 308 ctgcag 313 |||||| Sbjct: 1308 ctgcag 1313 >CG31363-RD feature: mRNA loc=3R:complement(7416128..7417047,7418107..7418364, 7419373..7419506, 7445444..7445674);ID=FBan0031363;gene_id=FBgn0051363;gene _sym=CG31363;sym=CG31363;scaffold=AE003692;len=1543 Length = 1543 Score = 607 bits (306), Expect = e-173 Identities = 306/306 (100%) Strand = Plus / Plus Query: 8 ccctacactcccgtatccaggtcagaaaatcgaaaggcacgaaagtaggacatgatggcc 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 898 ccctacactcccgtatccaggtcagaaaatcgaaaggcacgaaagtaggacatgatggcc 957 Query: 68 aacgaataattaagcgagagaatagcaattgctcaacgatctgcagatgcaatagtacga 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 958 aacgaataattaagcgagagaatagcaattgctcaacgatctgcagatgcaatagtacga 1017 Query: 128 tacgcttcccagatgagaattaatcaaccaattttagaaggcggcgttgcacccaaacct 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1018 tacgcttcccagatgagaattaatcaaccaattttagaaggcggcgttgcacccaaacct 1077 Query: 188 atcactaccaacaccaccaccaccccattgcaaatctgtaatttaaattccttagttggt 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1078 atcactaccaacaccaccaccaccccattgcaaatctgtaatttaaattccttagttggt 1137 Query: 248 gtaaatccatgtaacgcgtgtagccccacaaaacgacgcccgatcgcctgccctctgcaa 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1138 gtaaatccatgtaacgcgtgtagccccacaaaacgacgcccgatcgcctgccctctgcaa 1197 Query: 308 ctgcag 313 |||||| Sbjct: 1198 ctgcag 1203 >CG31363-RC feature: mRNA loc=3R:complement(7416128..7417047,7418107..7418364, 7419373..7419506,7429882..7429979, 7430326..7430491);ID=FBan0031363;gene_id=FBgn0051363;gene _sym=CG31363;sym=CG31363;scaffold=AE003692;len=1576 Length = 1576 Score = 607 bits (306), Expect = e-173 Identities = 306/306 (100%) Strand = Plus / Plus Query: 8 ccctacactcccgtatccaggtcagaaaatcgaaaggcacgaaagtaggacatgatggcc 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 931 ccctacactcccgtatccaggtcagaaaatcgaaaggcacgaaagtaggacatgatggcc 990 Query: 68 aacgaataattaagcgagagaatagcaattgctcaacgatctgcagatgcaatagtacga 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 991 aacgaataattaagcgagagaatagcaattgctcaacgatctgcagatgcaatagtacga 1050 Query: 128 tacgcttcccagatgagaattaatcaaccaattttagaaggcggcgttgcacccaaacct 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1051 tacgcttcccagatgagaattaatcaaccaattttagaaggcggcgttgcacccaaacct 1110 Query: 188 atcactaccaacaccaccaccaccccattgcaaatctgtaatttaaattccttagttggt 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1111 atcactaccaacaccaccaccaccccattgcaaatctgtaatttaaattccttagttggt 1170 Query: 248 gtaaatccatgtaacgcgtgtagccccacaaaacgacgcccgatcgcctgccctctgcaa 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1171 gtaaatccatgtaacgcgtgtagccccacaaaacgacgcccgatcgcctgccctctgcaa 1230 Query: 308 ctgcag 313 |||||| Sbjct: 1231 ctgcag 1236 >CG31363-RB feature: mRNA loc=3R:complement(7416128..7417047,7417241..7417651, 7417735..7417984);ID=FBan0031363;gene_id=FBgn0051363;gene _sym=CG31363;sym=CG31363;scaffold=AE003692;len=1581 Length = 1581 Score = 607 bits (306), Expect = e-173 Identities = 306/306 (100%) Strand = Plus / Plus Query: 8 ccctacactcccgtatccaggtcagaaaatcgaaaggcacgaaagtaggacatgatggcc 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 936 ccctacactcccgtatccaggtcagaaaatcgaaaggcacgaaagtaggacatgatggcc 995 Query: 68 aacgaataattaagcgagagaatagcaattgctcaacgatctgcagatgcaatagtacga 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 996 aacgaataattaagcgagagaatagcaattgctcaacgatctgcagatgcaatagtacga 1055 Query: 128 tacgcttcccagatgagaattaatcaaccaattttagaaggcggcgttgcacccaaacct 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1056 tacgcttcccagatgagaattaatcaaccaattttagaaggcggcgttgcacccaaacct 1115 Query: 188 atcactaccaacaccaccaccaccccattgcaaatctgtaatttaaattccttagttggt 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1116 atcactaccaacaccaccaccaccccattgcaaatctgtaatttaaattccttagttggt 1175 Query: 248 gtaaatccatgtaacgcgtgtagccccacaaaacgacgcccgatcgcctgccctctgcaa 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1176 gtaaatccatgtaacgcgtgtagccccacaaaacgacgcccgatcgcctgccctctgcaa 1235 Query: 308 ctgcag 313 |||||| Sbjct: 1236 ctgcag 1241 >CG31363-RA feature: mRNA loc=3R:complement(7416128..7417047,7417735..7417752, 7418107..7418364,7419373..7419506, 7445444..7445674);ID=FBan0031363;gene_id=FBgn0051363;gene _sym=CG31363;sym=CG31363;scaffold=AE003692;len=1561 Length = 1561 Score = 607 bits (306), Expect = e-173 Identities = 306/306 (100%) Strand = Plus / Plus Query: 8 ccctacactcccgtatccaggtcagaaaatcgaaaggcacgaaagtaggacatgatggcc 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 916 ccctacactcccgtatccaggtcagaaaatcgaaaggcacgaaagtaggacatgatggcc 975 Query: 68 aacgaataattaagcgagagaatagcaattgctcaacgatctgcagatgcaatagtacga 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 976 aacgaataattaagcgagagaatagcaattgctcaacgatctgcagatgcaatagtacga 1035 Query: 128 tacgcttcccagatgagaattaatcaaccaattttagaaggcggcgttgcacccaaacct 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1036 tacgcttcccagatgagaattaatcaaccaattttagaaggcggcgttgcacccaaacct 1095 Query: 188 atcactaccaacaccaccaccaccccattgcaaatctgtaatttaaattccttagttggt 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1096 atcactaccaacaccaccaccaccccattgcaaatctgtaatttaaattccttagttggt 1155 Query: 248 gtaaatccatgtaacgcgtgtagccccacaaaacgacgcccgatcgcctgccctctgcaa 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1156 gtaaatccatgtaacgcgtgtagccccacaaaacgacgcccgatcgcctgccctctgcaa 1215 Query: 308 ctgcag 313 |||||| Sbjct: 1216 ctgcag 1221 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,848 Number of Sequences: 18737 Number of extensions: 13848 Number of successful extensions: 631 Number of sequences better than 1.0e-100: 6 Number of HSP's better than 0.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 619 Number of HSP's gapped (non-prelim): 12 length of query: 484 length of database: 41,270,998 effective HSP length: 17 effective length of query: 467 effective length of database: 40,952,469 effective search space: 19124803023 effective search space used: 19124803023 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946043|AI946043 bs20a05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs20a05 5', mRNA sequence. (470 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31732-RD feature: mRNA loc=2L:complement(15239291..15239722,15... 904 0.0 CG31732-RC feature: mRNA loc=2L:complement(15239291..15239722,15... 904 0.0 CG31732-RB feature: mRNA loc=2L:complement(15235422..15235671,15... 904 0.0 CG31732-RA feature: mRNA loc=2L:complement(15239291..15239722,15... 555 e-157 >CG31732-RD feature: mRNA loc=2L:complement(15239291..15239722,15239803..15239925, 15239997..15240097,15240155..15240389,15240460..15240711, 15241055..15241213,15241417..15241749,15241855..15242180, 15242236..15242775);ID=FBan0031732;gene_id=FBgn0028877;ge ne_sym=CG31732;sym=CG31732;scaffold=AE003646;len=2501 Length = 2501 Score = 904 bits (456), Expect = 0.0 Identities = 459/460 (99%) Strand = Plus / Minus Query: 11 gttttttcagagtgtcctcacgctcggataccagtttttcgataaagcaggacacacgtt 70 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1641 gttttttcagagtgtcctcacgctcggataccagtttttcgataaagcaggacacacgtt 1582 Query: 71 ttcgccgaatctcaatggtctggaactcctgtttgttgtgcagatcgagaagatcattga 130 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1581 ttcgccgaatctcaatggtctggaactcctgtttgttgtgcagatcgagaagatcattga 1522 Query: 131 gctccgcgttcagcagccgcagcatttcgctctcctgggtgtcgtggatcgagagattct 190 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1521 gctccgcgtttagcagccgcagcatttcgctctcctgggtgtcgtggatcgagagattct 1462 Query: 191 cgagcatatcgcttgtaatcgcgtccgcggtcagtgtatcgttgggcgattcctccattt 250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1461 cgagcatatcgcttgtaatcgcgtccgcggtcagtgtatcgttgggcgattcctccattt 1402 Query: 251 tggcctgatctctggactcaatgcaccgggtgatctcgtgcagctgttgattgagctgtg 310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1401 tggcctgatctctggactcaatgcaccgggtgatctcgtgcagctgttgattgagctgtg 1342 Query: 311 ctatgcactgatccttcaaaagtaacttctgcctggccgtgtgtacaacctcgtccaagg 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1341 ctatgcactgatccttcaaaagtaacttctgcctggccgtgtgtacaacctcgtccaagg 1282 Query: 371 cattgatctgtgacttcagttcgccgatctcgtcatgcttggcggctatctcgccgacta 430 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1281 cattgatctgtgacttcagttcgccgatctcgtcatgcttggcggctatctcgccgacta 1222 Query: 431 aggacttcatgctctcggacatcttctcgctctcgcattc 470 |||||||||||||||||||||||||||||||||||||||| Sbjct: 1221 aggacttcatgctctcggacatcttctcgctctcgcattc 1182 >CG31732-RC feature: mRNA loc=2L:complement(15239291..15239722,15239803..15239925, 15239997..15240097,15240155..15240389,15240460..15240711, 15241055..15241213,15241417..15241749, 15241855..15242775);ID=FBan0031732;gene_id=FBgn0028877;ge ne_sym=CG31732;sym=CG31732;scaffold=AE003646;len=2556 Length = 2556 Score = 904 bits (456), Expect = 0.0 Identities = 459/460 (99%) Strand = Plus / Minus Query: 11 gttttttcagagtgtcctcacgctcggataccagtttttcgataaagcaggacacacgtt 70 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1696 gttttttcagagtgtcctcacgctcggataccagtttttcgataaagcaggacacacgtt 1637 Query: 71 ttcgccgaatctcaatggtctggaactcctgtttgttgtgcagatcgagaagatcattga 130 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1636 ttcgccgaatctcaatggtctggaactcctgtttgttgtgcagatcgagaagatcattga 1577 Query: 131 gctccgcgttcagcagccgcagcatttcgctctcctgggtgtcgtggatcgagagattct 190 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1576 gctccgcgtttagcagccgcagcatttcgctctcctgggtgtcgtggatcgagagattct 1517 Query: 191 cgagcatatcgcttgtaatcgcgtccgcggtcagtgtatcgttgggcgattcctccattt 250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1516 cgagcatatcgcttgtaatcgcgtccgcggtcagtgtatcgttgggcgattcctccattt 1457 Query: 251 tggcctgatctctggactcaatgcaccgggtgatctcgtgcagctgttgattgagctgtg 310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1456 tggcctgatctctggactcaatgcaccgggtgatctcgtgcagctgttgattgagctgtg 1397 Query: 311 ctatgcactgatccttcaaaagtaacttctgcctggccgtgtgtacaacctcgtccaagg 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1396 ctatgcactgatccttcaaaagtaacttctgcctggccgtgtgtacaacctcgtccaagg 1337 Query: 371 cattgatctgtgacttcagttcgccgatctcgtcatgcttggcggctatctcgccgacta 430 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1336 cattgatctgtgacttcagttcgccgatctcgtcatgcttggcggctatctcgccgacta 1277 Query: 431 aggacttcatgctctcggacatcttctcgctctcgcattc 470 |||||||||||||||||||||||||||||||||||||||| Sbjct: 1276 aggacttcatgctctcggacatcttctcgctctcgcattc 1237 >CG31732-RB feature: mRNA loc=2L:complement(15235422..15235671,15235884..15236190, 15236258..15236526,15236589..15236794,15236867..15237023, 15239803..15239925,15239997..15240097,15240155..15240389, 15240460..15240711,15241055..15241213,15241417..15241749, 15241855..15242775);ID=FBan0031732;gene_id=FBgn0028877;ge ne_sym=CG31732;sym=CG31732;scaffold=AE003646;len=3313 Length = 3313 Score = 904 bits (456), Expect = 0.0 Identities = 459/460 (99%) Strand = Plus / Minus Query: 11 gttttttcagagtgtcctcacgctcggataccagtttttcgataaagcaggacacacgtt 70 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1696 gttttttcagagtgtcctcacgctcggataccagtttttcgataaagcaggacacacgtt 1637 Query: 71 ttcgccgaatctcaatggtctggaactcctgtttgttgtgcagatcgagaagatcattga 130 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1636 ttcgccgaatctcaatggtctggaactcctgtttgttgtgcagatcgagaagatcattga 1577 Query: 131 gctccgcgttcagcagccgcagcatttcgctctcctgggtgtcgtggatcgagagattct 190 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1576 gctccgcgtttagcagccgcagcatttcgctctcctgggtgtcgtggatcgagagattct 1517 Query: 191 cgagcatatcgcttgtaatcgcgtccgcggtcagtgtatcgttgggcgattcctccattt 250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1516 cgagcatatcgcttgtaatcgcgtccgcggtcagtgtatcgttgggcgattcctccattt 1457 Query: 251 tggcctgatctctggactcaatgcaccgggtgatctcgtgcagctgttgattgagctgtg 310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1456 tggcctgatctctggactcaatgcaccgggtgatctcgtgcagctgttgattgagctgtg 1397 Query: 311 ctatgcactgatccttcaaaagtaacttctgcctggccgtgtgtacaacctcgtccaagg 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1396 ctatgcactgatccttcaaaagtaacttctgcctggccgtgtgtacaacctcgtccaagg 1337 Query: 371 cattgatctgtgacttcagttcgccgatctcgtcatgcttggcggctatctcgccgacta 430 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1336 cattgatctgtgacttcagttcgccgatctcgtcatgcttggcggctatctcgccgacta 1277 Query: 431 aggacttcatgctctcggacatcttctcgctctcgcattc 470 |||||||||||||||||||||||||||||||||||||||| Sbjct: 1276 aggacttcatgctctcggacatcttctcgctctcgcattc 1237 >CG31732-RA feature: mRNA loc=2L:complement(15239291..15239722,15239803..15239925, 15239997..15240097,15240155..15240389,15240460..15240711, 15240798..15240905,15241055..15241213,15241417..15241749, 15241855..15242775);ID=FBan0031732;gene_id=FBgn0028877;ge ne_sym=CG31732;sym=CG31732;scaffold=AE003646;len=2664 Length = 2664 Score = 555 bits (280), Expect = e-157 Identities = 283/284 (99%) Strand = Plus / Minus Query: 11 gttttttcagagtgtcctcacgctcggataccagtttttcgataaagcaggacacacgtt 70 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1804 gttttttcagagtgtcctcacgctcggataccagtttttcgataaagcaggacacacgtt 1745 Query: 71 ttcgccgaatctcaatggtctggaactcctgtttgttgtgcagatcgagaagatcattga 130 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1744 ttcgccgaatctcaatggtctggaactcctgtttgttgtgcagatcgagaagatcattga 1685 Query: 131 gctccgcgttcagcagccgcagcatttcgctctcctgggtgtcgtggatcgagagattct 190 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1684 gctccgcgtttagcagccgcagcatttcgctctcctgggtgtcgtggatcgagagattct 1625 Query: 191 cgagcatatcgcttgtaatcgcgtccgcggtcagtgtatcgttgggcgattcctccattt 250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1624 cgagcatatcgcttgtaatcgcgtccgcggtcagtgtatcgttgggcgattcctccattt 1565 Query: 251 tggcctgatctctggactcaatgcaccgggtgatctcgtgcagc 294 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1564 tggcctgatctctggactcaatgcaccgggtgatctcgtgcagc 1521 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,782 Number of Sequences: 18737 Number of extensions: 11782 Number of successful extensions: 440 Number of sequences better than 1.0e-100: 4 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 435 Number of HSP's gapped (non-prelim): 5 length of query: 470 length of database: 41,270,998 effective HSP length: 17 effective length of query: 453 effective length of database: 40,952,469 effective search space: 18551468457 effective search space used: 18551468457 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946052|AI946052 bs20b10.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs20b10 5', mRNA sequence. (447 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8866 Number of Sequences: 18737 Number of extensions: 8866 Number of successful extensions: 662 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 662 Number of HSP's gapped (non-prelim): 0 length of query: 447 length of database: 41,270,998 effective HSP length: 17 effective length of query: 430 effective length of database: 40,952,469 effective search space: 17609561670 effective search space used: 17609561670 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946053|AI946053 bs20b11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs20b11 5', mRNA sequence. (73 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1452 Number of Sequences: 18737 Number of extensions: 1452 Number of successful extensions: 344 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 344 Number of HSP's gapped (non-prelim): 0 length of query: 73 length of database: 41,270,998 effective HSP length: 16 effective length of query: 57 effective length of database: 40,971,206 effective search space: 2335358742 effective search space used: 2335358742 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946063|AI946063 bs20d06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs20d06 5', mRNA sequence. (462 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32267-RA feature: mRNA loc=3L:complement(3452172..3452485,3452... 753 0.0 >CG32267-RA feature: mRNA loc=3L:complement(3452172..3452485, 3452556..3452742);ID=FBan0032267;gene_id=FBgn0052267;gen e_sym=CG32267;sym=CG32267;scaffold=AE003478;len=501 Length = 501 Score = 753 bits (380), Expect = 0.0 Identities = 418/432 (96%), Gaps = 2/432 (0%) Strand = Plus / Minus Query: 31 aagttacatgtttcttgttttttattcgcttccattcgctcgacagttaccaaacattta 90 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 455 aagttacatgtttcttgttttttattcgcttccattcgctcgacagttaccaaacattta 396 Query: 91 caatgcatcgatttaaactttaaaagacatcaaatgggtcagagtgcttttaaataaatg 150 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 395 caatgcatcgatttaaactttaaaagacatcaaatgggtcagagtgcttttaaataaatg 336 Query: 151 catttcgcgtgccagttgcttaggattttgctataatttcttgaacaactaggtaattga 210 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 335 catttcgcgtgccagttgcttaggattttgctataatttcttgaacaactaggtaattga 276 Query: 211 taacgtttttaaataagtagacagcttttagtcttcttcgatcattctttcttctacgcc 270 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 275 taacgtttttaaataagtagacagcttttagtcttcttcgatcattttttcttctacgcc 216 Query: 271 gtatttaaatgcttcaggactatgggtgccaagcgaacagcggctattacggctccaaat 330 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 215 gtatttaaatgcttcaggactatgggagccaagcgaacagcggctattacggctccaaat 156 Query: 331 agaatgaaattgaagcggacttcggctgccacgcgcttctgctcctcggcgggatcgggt 390 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 155 aggatgaaattgaagcggacttcggctgccacgcgcttctgctcctcggcgggatcgggt 96 Query: 391 tgtgactgctgcaggcggaacatctttgataaatatatannnnnnnnatttatttacaaa 450 |||||||||||||||||||||||| ||||| ||||||| ||||||||||||| Sbjct: 95 tgtgactgctgcaggcggaacatccttgattaatatat--tttttttatttatttacaaa 38 Query: 451 gaaaaacgtgcg 462 |||||||||||| Sbjct: 37 gaaaaacgtgcg 26 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,200 Number of Sequences: 18737 Number of extensions: 12200 Number of successful extensions: 314 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 312 Number of HSP's gapped (non-prelim): 2 length of query: 462 length of database: 41,270,998 effective HSP length: 17 effective length of query: 445 effective length of database: 40,952,469 effective search space: 18223848705 effective search space used: 18223848705 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946064|AI946064 bs20d07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs20d07 5', mRNA sequence. (371 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG10219-RA feature: mRNA loc=3R:complement(19575864..19576302,19... 676 0.0 >CG10219-RA feature: mRNA loc=3R:complement(19575864..19576302,19576364..19576551, 19576624..19576739, 19576831..19576975);ID=FBan0010219;gene_id=FBgn0039112;g ene_sym=CG10219;sym=CG10219;scaffold=AE003744;len=888 Length = 888 Score = 676 bits (341), Expect = 0.0 Identities = 344/345 (99%) Strand = Plus / Minus Query: 27 gtgactttttacaattctttatttaatgcttatcgcgaaactatgaataaataactggtg 86 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 746 gtgactttttacaattctttatttaatgcttatcgcgaaactatgaataaataactggtg 687 Query: 87 tttcgtggttcatcaactgattgctcctttgacatttaagccttctcggcatccttgccc 146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 686 tttcgtggttcatcaactgattgctcctttgacatttaagccttctcggcatccttgccc 627 Query: 147 ttgatggcccagaagcgcttgataccattggccagacccacatcattctggatgaagtag 206 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 626 ttgatggcccagaagcgcttgataccattggccagacccacatcattttggatgaagtag 567 Query: 207 aagaggccgcccagcgtggccaccgagatgatgatcagcgcaatgtgggctaccttgggc 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 566 aagaggccgcccagcgtggccaccgagatgatgatcagcgcaatgtgggctaccttgggc 507 Query: 267 aggacgtttccaacgacagatggccgcatgtagtcaactaccatggcctccacgccccaa 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 506 aggacgtttccaacgacagatggccgcatgtagtcaactaccatggcctccacgccccaa 447 Query: 327 tgggtgtggatgacgacagagatggccatgagggcgtccaatacc 371 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 446 tgggtgtggatgacgacagagatggccatgagggcgtccaatacc 402 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9371 Number of Sequences: 18737 Number of extensions: 9371 Number of successful extensions: 811 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 810 Number of HSP's gapped (non-prelim): 1 length of query: 371 length of database: 41,270,998 effective HSP length: 17 effective length of query: 354 effective length of database: 40,952,469 effective search space: 14497174026 effective search space used: 14497174026 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946065|AI946065 bs20d09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs20d09 5', mRNA sequence. (416 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG6845-RA feature: mRNA loc=3L:join(127083..127336,127402..12802... 811 0.0 CG6845-RB feature: mRNA loc=3L:join(127768..128028,128083..12827... 391 e-108 >CG6845-RA feature: mRNA loc=3L:join(127083..127336,127402..128028, 128083..128296,128360..128513,128566..129043, 129092..129275,129334..129471, 129525..129689);ID=FBan0006845;gene_id=FBgn0035099;gene_ sym=CG6845;sym=CG6845;scaffold=AE003467;len=2214 Length = 2214 Score = 811 bits (409), Expect = 0.0 Identities = 409/409 (100%) Strand = Plus / Minus Query: 8 gatcttggctggatagcagagggccagaaacagctttgcagcatggcatagcgccttgaa 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 817 gatcttggctggatagcagagggccagaaacagctttgcagcatggcatagcgccttgaa 758 Query: 68 tacgcccatctttgactggcacctgatcattgcgtgatgcgccgtctttttgcaacgtgc 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 757 tacgcccatctttgactggcacctgatcattgcgtgatgcgccgtctttttgcaacgtgc 698 Query: 128 ccagggagtgcccatttctgtgttgcacaggtctacgatggatttcagccaagcggcgca 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 697 ccagggagtgcccatttctgtgttgcacaggtctacgatggatttcagccaagcggcgca 638 Query: 188 gttcttcagggttttaactacaaaaatgaatcagcagagaaaactgcagcactttttaat 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 637 gttcttcagggttttaactacaaaaatgaatcagcagagaaaactgcagcactttttaat 578 Query: 248 acagatactcactaattgcgatcaattggtcctgaatgcgtaacagcactaccatggcca 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 577 acagatactcactaattgcgatcaattggtcctgaatgcgtaacagcactaccatggcca 518 Query: 308 gcttgagcacccgacgcacttcccgcatcaagagatccaccgctagctggatggcattca 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 517 gcttgagcacccgacgcacttcccgcatcaagagatccaccgctagctggatggcattca 458 Query: 368 ccggctccagtattacgtccaacatctggccaagcgcctgacgcaatag 416 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 457 ccggctccagtattacgtccaacatctggccaagcgcctgacgcaatag 409 >CG6845-RB feature: mRNA loc=3L:join(127768..128028,128083..128276, 128360..128513,128566..129043,129092..129275, 129334..129471, 129525..129689);ID=FBan0006845;gene_id=FBgn0035099;gene_ sym=CG6845;sym=CG6845;scaffold=AE003467;len=1574 Length = 1574 Score = 391 bits (197), Expect = e-108 Identities = 197/197 (100%) Strand = Plus / Minus Query: 8 gatcttggctggatagcagagggccagaaacagctttgcagcatggcatagcgccttgaa 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 197 gatcttggctggatagcagagggccagaaacagctttgcagcatggcatagcgccttgaa 138 Query: 68 tacgcccatctttgactggcacctgatcattgcgtgatgcgccgtctttttgcaacgtgc 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 137 tacgcccatctttgactggcacctgatcattgcgtgatgcgccgtctttttgcaacgtgc 78 Query: 128 ccagggagtgcccatttctgtgttgcacaggtctacgatggatttcagccaagcggcgca 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77 ccagggagtgcccatttctgtgttgcacaggtctacgatggatttcagccaagcggcgca 18 Query: 188 gttcttcagggttttaa 204 ||||||||||||||||| Sbjct: 17 gttcttcagggttttaa 1 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9239 Number of Sequences: 18737 Number of extensions: 9239 Number of successful extensions: 681 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 679 Number of HSP's gapped (non-prelim): 2 length of query: 416 length of database: 41,270,998 effective HSP length: 17 effective length of query: 399 effective length of database: 40,952,469 effective search space: 16340035131 effective search space used: 16340035131 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946068|AI946068 bs20e03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs20e03 5', mRNA sequence. (442 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8965 Number of Sequences: 18737 Number of extensions: 8965 Number of successful extensions: 641 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 641 Number of HSP's gapped (non-prelim): 0 length of query: 442 length of database: 41,270,998 effective HSP length: 17 effective length of query: 425 effective length of database: 40,952,469 effective search space: 17404799325 effective search space used: 17404799325 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946070|AI946070 bs20e06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs20e06 5', mRNA sequence. (413 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG15817-RB feature: mRNA loc=3R:join(25044254..25044665,25045424... 660 0.0 CG15817-RA feature: mRNA loc=3R:join(25044276..25044436,25044597... 660 0.0 >CG15817-RB feature: mRNA loc=3R:join(25044254..25044665,25045424..25045898, 25046169..25047186,25047253..25047895, 25047951..25050252);ID=FBan0015817;gene_id=FBgn0028476;ge ne_sym=CG15817;sym=CG15817;scaffold=AE003768;len=4850 Length = 4850 Score = 660 bits (333), Expect = 0.0 Identities = 339/341 (99%) Strand = Plus / Minus Query: 73 acgattacattgtttaacaaacagacttcattttttgcttattattctagtctagagaca 132 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3801 acgattacattgtttaacaaacagacttcattttttgcttattattctagtctagagaca 3742 Query: 133 tctccaatccgatcagtatgtccgatgtacactttttcaataaatttttactttccccgc 192 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3741 tctccaatccgatcagtatgtccgatgtacactttttcaataaatttttactttccccgc 3682 Query: 193 ttgccactgggcttttgcgatttggggcaacctcaaattttgtgcgaaccgctggacacg 252 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 3681 ttgccactgggcttttgcgatttggggcaacctcaaattttgtgcgagccgctggacacg 3622 Query: 253 ttttcattcgaccacgaactctgtgccgacgacggtggcggaggcgttgtggatgatcca 312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3621 ttttcattcgaccacgaactctgtgccgacgacggtggcggaggcgttgtggatgatcca 3562 Query: 313 ggcatcggcggcgtcgccttctgcggctgcagatcgaatcgcgcgtaaaagagcaaatag 372 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3561 ggcatcggcggcgtcgccttctgcggctgcagatcgaatcgcgcgtaaaagagcaaatac 3502 Query: 373 ggcgttattgtgatcttccgtgtgggcgatagcagctcttc 413 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 3501 ggcgttattgtgatcttccgtgtgggcgatagcagctcttc 3461 >CG15817-RA feature: mRNA loc=3R:join(25044276..25044436,25044597..25044665, 25045413..25045898,25046169..25047186,25047253..25047895, 25047951..25050252);ID=FBan0015817;gene_id=FBgn0028476;ge ne_sym=CG15817;sym=CG15817;scaffold=AE003768;len=4679 Length = 4679 Score = 660 bits (333), Expect = 0.0 Identities = 339/341 (99%) Strand = Plus / Minus Query: 73 acgattacattgtttaacaaacagacttcattttttgcttattattctagtctagagaca 132 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3630 acgattacattgtttaacaaacagacttcattttttgcttattattctagtctagagaca 3571 Query: 133 tctccaatccgatcagtatgtccgatgtacactttttcaataaatttttactttccccgc 192 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3570 tctccaatccgatcagtatgtccgatgtacactttttcaataaatttttactttccccgc 3511 Query: 193 ttgccactgggcttttgcgatttggggcaacctcaaattttgtgcgaaccgctggacacg 252 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 3510 ttgccactgggcttttgcgatttggggcaacctcaaattttgtgcgagccgctggacacg 3451 Query: 253 ttttcattcgaccacgaactctgtgccgacgacggtggcggaggcgttgtggatgatcca 312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3450 ttttcattcgaccacgaactctgtgccgacgacggtggcggaggcgttgtggatgatcca 3391 Query: 313 ggcatcggcggcgtcgccttctgcggctgcagatcgaatcgcgcgtaaaagagcaaatag 372 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3390 ggcatcggcggcgtcgccttctgcggctgcagatcgaatcgcgcgtaaaagagcaaatac 3331 Query: 373 ggcgttattgtgatcttccgtgtgggcgatagcagctcttc 413 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 3330 ggcgttattgtgatcttccgtgtgggcgatagcagctcttc 3290 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8532 Number of Sequences: 18737 Number of extensions: 8532 Number of successful extensions: 683 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 681 Number of HSP's gapped (non-prelim): 2 length of query: 413 length of database: 41,270,998 effective HSP length: 17 effective length of query: 396 effective length of database: 40,952,469 effective search space: 16217177724 effective search space used: 16217177724 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946079|AI946079 bs20f05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs20f05 5', mRNA sequence. (446 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG1288-RA feature: mRNA loc=3R:complement(3033114..3033449,30335... 837 0.0 >CG1288-RA feature: mRNA loc=3R:complement(3033114..3033449, 3033505..3034156);ID=FBan0001288;gene_id=FBgn0037484;gen e_sym=CG1288;sym=CG1288;scaffold=AE003672;len=988 Length = 988 Score = 837 bits (422), Expect = 0.0 Identities = 437/441 (99%), Gaps = 2/441 (0%) Strand = Plus / Minus Query: 8 ctttaattggttgggatctattaaacattttagttaaatgggaaataattctcttcgtat 67 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 982 ctttaattggttgggatctattaaacatttcagttaaatgggaaataattctcttcgtat 923 Query: 68 gagagaatattaccctctatgagcaacaaacaaattagcatagctattcttttattaatt 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 922 gagagaatattaccctctatgagcaacaaacaaattagcatagctattcttttattaatt 863 Query: 128 gcacaattcagcatgtttgctatctgcgaaaacattaggttggggaatgttctagtctct 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 862 gcacaattcagcatgtttgctatctgcgaaaacattaggttggggaatgttctagtctct 803 Query: 188 tgatggcccactgttcaaaaggtgcaaatgctatgctaaacatcaaatgacaaatctacc 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 802 tgatggcccactgttcaaaaggtgcaaatgctatgctaaacatcaaatgacaaatctacc 743 Query: 248 aggagagacccgatagttggaagctgccaagcggtcaatttggacattcaaacagcattt 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 742 aggagagacccgatagttggaagctgccaagcggtcaatttggacattcaaacagcattt 683 Query: 308 tagac--attcttttagatcataatattattgggcagaaaatggcgaagttccggattcg 365 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 682 tagacatattcttttagatcataatattattgggcagaaaatggcgaagttccggattcg 623 Query: 366 ggtttttgatgatcgtttcatctatgtaatctccgccagagcgcagcgatataggttcta 425 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 622 ggtttttgttgatcgtttcatctatgtaatctccgccagagcgcagcgatataggttcta 563 Query: 426 tggcagggcgataagtttgaa 446 ||||||||||||||||||||| Sbjct: 562 tggcagggcgataagtttgaa 542 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8328 Number of Sequences: 18737 Number of extensions: 8328 Number of successful extensions: 597 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 595 Number of HSP's gapped (non-prelim): 1 length of query: 446 length of database: 41,270,998 effective HSP length: 17 effective length of query: 429 effective length of database: 40,952,469 effective search space: 17568609201 effective search space used: 17568609201 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946086|AI946086 bs20g01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs20g01 5', mRNA sequence. (440 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7834 Number of Sequences: 18737 Number of extensions: 7834 Number of successful extensions: 578 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 578 Number of HSP's gapped (non-prelim): 0 length of query: 440 length of database: 41,270,998 effective HSP length: 17 effective length of query: 423 effective length of database: 40,952,469 effective search space: 17322894387 effective search space used: 17322894387 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946087|AI946087 bs20g02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs20g02 5', mRNA sequence. (450 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,339 Number of Sequences: 18737 Number of extensions: 14339 Number of successful extensions: 2939 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2939 Number of HSP's gapped (non-prelim): 0 length of query: 450 length of database: 41,270,998 effective HSP length: 17 effective length of query: 433 effective length of database: 40,952,469 effective search space: 17732419077 effective search space used: 17732419077 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946089|AI946089 bs20g04.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs20g04 5', mRNA sequence. (475 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG13923-RA feature: mRNA loc=3L:join(1783775..1783956,1784062..1... 676 0.0 >CG13923-RA feature: mRNA loc=3L:join(1783775..1783956,1784062..1784196, 1785639..1786337, 1786865..1787448);ID=FBan0013923;gene_id=FBgn0035277;gene _sym=CG13923;sym=CG13923;scaffold=AE003472;len=1600 Length = 1600 Score = 676 bits (341), Expect = 0.0 Identities = 360/369 (97%) Strand = Plus / Minus Query: 107 cagaaaacacatgtttaatattcaaaaaggcataacaatgacaacaaactaaaagaaaaa 166 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1600 cagaaaacacatgtttaatattcaaaaaggcataacaatgacaacaaactaaaagaaaaa 1541 Query: 167 tgcattccccaaagggnnnnnnnncagcgacacacatacgcacgactaacacgatagaaa 226 |||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 1540 tgcattccccaaagggaaaaaaaacagcgacacacatacgcacgactaacacgatagaaa 1481 Query: 227 ccattgaaaagaggacaaagaagatttgaaatgttagagctacgacggatgtacggctat 286 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1480 ccattgaaaagaggacaaagaagatttgaaatgttagagctacgacggatgtacggctat 1421 Query: 287 ctactcctgctgcaccgccgactcctccagattgcagaagacattgcgcatcttgtccag 346 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1420 ctactcctgctgcaccgccgactcctccagattgcagaagacattgcgcatcttgtccag 1361 Query: 347 gtcgggcggcgcggagtccgggttccggatccacatgatgtaggcctgtttgtcggtccg 406 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1360 gtcgggcggcgcggtgtccgggttccggatccacatgatgtaggcctgtttgtcggtccg 1301 Query: 407 ggtcagcggcttgaagtttcgcggattctgcgcctcctcgtcctgcagcttagagttgta 466 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1300 ggtcagcggcttgaagtttcgcggattctgcgcctcctcgtcctgcagcttagagttgta 1241 Query: 467 gcgcgcgta 475 ||||||||| Sbjct: 1240 gcgcgcgta 1232 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,388 Number of Sequences: 18737 Number of extensions: 11388 Number of successful extensions: 311 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 309 Number of HSP's gapped (non-prelim): 2 length of query: 475 length of database: 41,270,998 effective HSP length: 17 effective length of query: 458 effective length of database: 40,952,469 effective search space: 18756230802 effective search space used: 18756230802 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946090|AI946090 bs20g05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs20g05 5', mRNA sequence. (461 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG7441-RA feature: mRNA loc=3L:join(17798574..17798977,17799040.... 803 0.0 >CG7441-RA feature: mRNA loc=3L:join(17798574..17798977,17799040..17799467, 17799656..17801333);ID=FBan0007441;gene_id=FBgn0036763;ge ne_sym=CG7441;sym=CG7441;scaffold=AE003522;len=2510 Length = 2510 Score = 803 bits (405), Expect = 0.0 Identities = 419/426 (98%) Strand = Plus / Minus Query: 36 tatgctaaatcagtataaatttatttgggtgcgagatttgcttataatttagcgatgaaa 95 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2510 tatgctaaatcagtataaatttatttgggtgcgagatttgcttataatttagcgatgaaa 2451 Query: 96 tccagccggtcaatgcaatcacatgggattaaacatacaagttcaaaatgtaatcttact 155 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2450 tccagccggtcaatgcaatcacatgggattaaacatacaagttcaaaatgtaatcttact 2391 Query: 156 gcactctcagtacataacagtaaatataacaataattgtagtgtcagtatccacatatgc 215 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2390 gcactctcagtacataacagtaaatataacaataattgtagtgtcagtatccacatatgc 2331 Query: 216 catttgattttgatacgtctatattatcttgacttcgtcttctgctgcaaaagctgttcg 275 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2330 catttgattttgatacgtctatattatcttgacttcgtcttctgctgcaaaagctgttcg 2271 Query: 276 cgattttcnnnnnnncgacagatttaacagtaatgttacctaagtatacttgtactacac 335 |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2270 cgattttcaaaaaaacgacagatttaacagtaatgttacctaagtatacttgtactacac 2211 Query: 336 ttataacaattgcaatgtttccgagagttaaatctcgactttggtagcttcagtggcgtt 395 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2210 ttataacaattgcaatgtttccgagagttaaatctcgactttggtagcttcagtggcgtt 2151 Query: 396 gcgctcgcctttctccctttcacgttccccggactcctcctcttcagcttcttcgcgttg 455 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2150 gcgctcgcctttctccctttcacgttccccggactcctcctcttcagcttcttcgcgttg 2091 Query: 456 ctcctc 461 |||||| Sbjct: 2090 ctcctc 2085 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9060 Number of Sequences: 18737 Number of extensions: 9060 Number of successful extensions: 212 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 210 Number of HSP's gapped (non-prelim): 1 length of query: 461 length of database: 41,270,998 effective HSP length: 17 effective length of query: 444 effective length of database: 40,952,469 effective search space: 18182896236 effective search space used: 18182896236 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946092|AI946092 bs20g09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs20g09 5', mRNA sequence. (432 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,476 Number of Sequences: 18737 Number of extensions: 14476 Number of successful extensions: 857 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 857 Number of HSP's gapped (non-prelim): 0 length of query: 432 length of database: 41,270,998 effective HSP length: 17 effective length of query: 415 effective length of database: 40,952,469 effective search space: 16995274635 effective search space used: 16995274635 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946113|AI946113 bs21a09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs21a09 5', mRNA sequence. (619 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG13111-RA feature: mRNA loc=2L:complement(9365260..9365826);ID=... 394 e-109 >CG13111-RA feature: mRNA loc=2L:complement(9365260..9365826);ID=FBan0013111;gene_ id=FBgn0032112;gene_sym=CG13111;sym=CG13111;scaffold=AE0 03624;len=567 Length = 567 Score = 394 bits (199), Expect = e-109 Identities = 199/199 (100%) Strand = Plus / Minus Query: 8 gcggaatgggctgctggacagtggccacctgggacgacgccccgtgagcgggccgaaaac 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 199 gcggaatgggctgctggacagtggccacctgggacgacgccccgtgagcgggccgaaaac 140 Query: 68 tcagatttggcgtccgctgacccatgctggcgattccgggtggcatctgggtgtgcgaca 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 139 tcagatttggcgtccgctgacccatgctggcgattccgggtggcatctgggtgtgcgaca 80 Query: 128 tgctcaacgtgggcggcacatttagcaccgctgccccaccgcccaccttgtgctgcgagt 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79 tgctcaacgtgggcggcacatttagcaccgctgccccaccgcccaccttgtgctgcgagt 20 Query: 188 gggcgtggcccgagtacat 206 ||||||||||||||||||| Sbjct: 19 gggcgtggcccgagtacat 1 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,976 Number of Sequences: 18737 Number of extensions: 15976 Number of successful extensions: 443 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 442 Number of HSP's gapped (non-prelim): 1 length of query: 619 length of database: 41,270,998 effective HSP length: 17 effective length of query: 602 effective length of database: 40,952,469 effective search space: 24653386338 effective search space used: 24653386338 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946120|AI946120 bs21b05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs21b05 5', mRNA sequence. (663 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31010-RA feature: mRNA loc=3R:complement(26519847..26521077,26... 1078 0.0 >CG31010-RA feature: mRNA loc=3R:complement(26519847..26521077, 26521143..26521181);ID=FBan0031010;gene_id=FBgn0051010;g ene_sym=CG31010;sym=CG31010;scaffold=AE003775;len=1270 Length = 1270 Score = 1078 bits (544), Expect = 0.0 Identities = 577/588 (98%) Strand = Plus / Plus Query: 76 gtgtgtgaaaagaaggtagatgtgaaggaaaagtgtgacaagcagagagaggagccggcg 135 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 339 gtgtgtgaaaagaaggtagatgtggaggaaaagtgtgacaagcagagagaggagccggcg 398 Query: 136 tgtagtaatccaaggaagatctttggctgccaaacaaatgcacctatgcacaactgcagg 195 ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct: 399 tgtggtaatccaaggaagatctttggctgccaaacaaatgcaccaatgcacaactgtagg 458 Query: 196 ttgaatggtggcagggaggaatccgacttggcagacgattcactcgtcgacaaggagctc 255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 459 ttgaatggtggcagggaggaatccgacttggcagacgattcactcgtcgacaaggagctc 518 Query: 256 cgagcccttgaggatcgtgccaggggtatatacgaaatacatatcgaatcttttccagat 315 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 519 cgagccctggaggatcgtgccaggggtatatacgaaatacatatcgaatcttttccagat 578 Query: 316 tcgccgccttgggactgcctgaaacctgcgcagaaactgcgctttcaatggaaagcttct 375 |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 579 tcgccgtcttgggactgcctgaaacctgcggagaaactgcgctttcaatggaaagcttct 638 Query: 376 actggagatgatttgatgaaaagtccttatgaaaatttcgcattgagttttaccagaagt 435 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 639 actggagatgatctgatgaaaagtccttatgaaaatttcgcattgagttttaccagaagt 698 Query: 436 ttcctcgaagcttttccccttgccacatgtgccactgttcgaaaggaggaaaaaatcgcg 495 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 699 ttcctcgaagcttttccccttgccacatgtgccactgttcgaaaggaggaaaaaatcgcg 758 Query: 496 tggtgcaagttagatcgctgccagcgaatgccgttcatactgcaggctctactgtaccac 555 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 759 tggtgcaagttagatcgctgccagcgaatgccgttcatactgcaggctctactgtaccac 818 Query: 556 gtggccaacggtgccatcgatcccgaagatcactgtgctgttcgtgaactttttcacaag 615 || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 819 gtcgccatcggtgccatcgatcccgaagatcactgtgctgttcgtgaactttttcacaag 878 Query: 616 ttgagataaagtgagaagtgcgttttccatttccattaccatttcgat 663 |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 879 ttgagatagagtgagaagtgcgttttccatttccattaccatttcgat 926 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,902 Number of Sequences: 18737 Number of extensions: 12902 Number of successful extensions: 315 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 313 Number of HSP's gapped (non-prelim): 2 length of query: 663 length of database: 41,270,998 effective HSP length: 17 effective length of query: 646 effective length of database: 40,952,469 effective search space: 26455294974 effective search space used: 26455294974 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946123|AI946123 bs21b09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs21b09 5', mRNA sequence. (412 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32148-RA feature: mRNA loc=3L:join(14972371..14972604,14972667... 769 0.0 >CG32148-RA feature: mRNA loc=3L:join(14972371..14972604, 14972667..14973003);ID=FBan0032148;gene_id=FBgn0047338;g ene_sym=CG32148;sym=CG32148;scaffold=AE003532;len=571 Length = 571 Score = 769 bits (388), Expect = 0.0 Identities = 388/388 (100%) Strand = Plus / Plus Query: 8 accaaaatgagtggaattctgttaaaatttctgcccaaaaacgagttgcttcatcaatca 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 69 accaaaatgagtggaattctgttaaaatttctgcccaaaaacgagttgcttcatcaatca 128 Query: 68 ctatacttttgcagaggaatggccaaaaagaagagccaaagtcaaggcaccgaaaagggc 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 129 ctatacttttgcagaggaatggccaaaaagaagagccaaagtcaaggcaccgaaaagggc 188 Query: 128 aagaaaacctgtaataagaatcagttctttggcggctgctttaagaagtccgaaccattt 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 189 aagaaaacctgtaataagaatcagttctttggcggctgctttaagaagtccgaaccattt 248 Query: 188 aggagggagaacaagaaggagaagagcaaacgctgtcgggatccttgcaaagatggaccc 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 249 aggagggagaacaagaaggagaagagcaaacgctgtcgggatccttgcaaagatggaccc 308 Query: 248 tgtcgccccgagaaataggatgaattcgtaaaaattgcacttacaactaacgtcactcta 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 309 tgtcgccccgagaaataggatgaattcgtaaaaattgcacttacaactaacgtcactcta 368 Query: 308 tcctcgtttagtttccatttccatagaaagttccctatatagaaaatggctgacttgaat 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 369 tcctcgtttagtttccatttccatagaaagttccctatatagaaaatggctgacttgaat 428 Query: 368 agaatataccaatactggttttaaattt 395 |||||||||||||||||||||||||||| Sbjct: 429 agaatataccaatactggttttaaattt 456 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9630 Number of Sequences: 18737 Number of extensions: 9630 Number of successful extensions: 848 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 847 Number of HSP's gapped (non-prelim): 1 length of query: 412 length of database: 41,270,998 effective HSP length: 17 effective length of query: 395 effective length of database: 40,952,469 effective search space: 16176225255 effective search space used: 16176225255 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946126|AI946126 bs21b12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs21b12 5', mRNA sequence. (622 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG16807-RA feature: mRNA loc=3L:complement(16321932..16323546,16... 1170 0.0 >CG16807-RA feature: mRNA loc=3L:complement(16321932..16323546,16323739..16325889, 16325955..16326117, 16327311..16327529);ID=FBan0016807;gene_id=FBgn0036621;ge ne_sym=CG16807;sym=CG16807;scaffold=AE003527;len=4148 Length = 4148 Score = 1170 bits (590), Expect = 0.0 Identities = 607/615 (98%) Strand = Plus / Plus Query: 8 agacgggcccactcagccagaggatatttctatataggtgtttatatatagatcgaatgg 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2688 agacgggcccactcagccagaggatatttctatataggtgtttatatatagatcgaatgg 2747 Query: 68 gcgggagagaatatgtataatgcaatcattttacacatcgttagaggtttgtaccgcaca 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2748 gcgggagagaatatgtataatgcaatcattttacacatcgttagaggtttgtaccgcaca 2807 Query: 128 gttcaaactttggtagaatttcaaaagtaattgtagttaaatctgatccgagcgatccgt 187 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2808 gttcaaactttgctagaatttcaaaagtaattgtagttaaatctgatccgagcgatccgt 2867 Query: 188 tattggatcggagccaaaacnnnnnnntcaattgggttgggtaccgtctattagaatcta 247 |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2868 tattggatcggagccaaaacaaaaaaatcaattgggttgggtaccgtctattagaatcta 2927 Query: 248 ttaaataattgtctaattagttcattgttcaaattttgtggaaatgtgttactcatgttc 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2928 ttaaataattgtctaattagttcattgttcaaattttgtggaaatgtgttactcatgttc 2987 Query: 308 gtgttatgtttcagattcggggtttgtgtctagcacacatagcgaaaagtaagagcaaac 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2988 gtgttatgtttcagattcggggtttgtgtctagcacacatagcgaaaagtaagagcaaac 3047 Query: 368 aaaaataaactcaacctagattgtaaactatgtgtgtagcctagaattcagctcagactc 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3048 aaaaataaactcaacctagattgtaaactatgtgtgtagcctagaattcagctcagactc 3107 Query: 428 gtagatccgtaggaaaccacaaaagaggcgaatgatcaagagtgatgaggatgcggatga 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3108 gtagatccgtaggaaaccacaaaagaggcgaatgatcaagagtgatgaggatgcggatga 3167 Query: 488 gatatgcaaatgcttgttgagatcgggcaacatccagttttgtatagcagcgaagatttt 547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3168 gatatgcaaatgcttgttgagatcgggcaacatccagttttgtatagcagcgaagatttt 3227 Query: 548 aaagcaattttctgagatgaaatagagatactgtgcactaattaactgaatcatgatcac 607 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3228 aaagcaattttctgagatgaaatagagatactgtgcactaattaactgaatcatgatcac 3287 Query: 608 aagacttcaagatct 622 ||||||||||||||| Sbjct: 3288 aagacttcaagatct 3302 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,700 Number of Sequences: 18737 Number of extensions: 11700 Number of successful extensions: 270 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 268 Number of HSP's gapped (non-prelim): 1 length of query: 622 length of database: 41,270,998 effective HSP length: 17 effective length of query: 605 effective length of database: 40,952,469 effective search space: 24776243745 effective search space used: 24776243745 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946128|AI946128 bs21c02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs21c02 5', mRNA sequence. (283 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2666 Number of Sequences: 18737 Number of extensions: 2666 Number of successful extensions: 178 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 178 Number of HSP's gapped (non-prelim): 0 length of query: 283 length of database: 41,270,998 effective HSP length: 16 effective length of query: 267 effective length of database: 40,971,206 effective search space: 10939312002 effective search space used: 10939312002 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946129|AI946129 bs21c04.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs21c04 5', mRNA sequence. (473 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31468-RA feature: mRNA loc=3R:complement(19516200..19516498,19... 870 0.0 >CG31468-RA feature: mRNA loc=3R:complement(19516200..19516498, 19516559..19516733);ID=FBan0031468;gene_id=FBgn0047351;g ene_sym=CG31468;sym=CG31468;scaffold=AE003744;len=474 Length = 474 Score = 870 bits (439), Expect = 0.0 Identities = 439/439 (100%) Strand = Plus / Plus Query: 7 gcaaacaactctttttagagtttcaaaattttacatatttctaaaaataacttacagttc 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9 gcaaacaactctttttagagtttcaaaattttacatatttctaaaaataacttacagttc 68 Query: 67 ctgacctttcgtaacctttgcatacgctcatcgattccaaaacttcgctaaaataaataa 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 69 ctgacctttcgtaacctttgcatacgctcatcgattccaaaacttcgctaaaataaataa 128 Query: 127 attttgaaatcgttagtttaaaagcatgtcgtgcaatcgttcttttggacctggccctgg 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 129 attttgaaatcgttagtttaaaagcatgtcgtgcaatcgttcttttggacctggccctgg 188 Query: 187 tgcctacaatctgcccagcacctttgggtttaagaactgcgacaagaggatgcagcgaag 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 189 tgcctacaatctgcccagcacctttgggtttaagaactgcgacaagaggatgcagcgaag 248 Query: 247 tccacagttctcatttggcagatcgtcgagggcgtgtaatagtcctaggataccgcaggg 306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 249 tccacagttctcatttggcagatcgtcgagggcgtgtaatagtcctaggataccgcaggg 308 Query: 307 acccggcccagcagattatcatgtgggcaaaataacgcgatatggacgtcctgcatcgga 366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 309 acccggcccagcagattatcatgtgggcaaaataacgcgatatggacgtcctgcatcgga 368 Query: 367 ggacttcaatgtttatcgtcgtcgctaatgggttaaggaatttgtttaaggagtagtaaa 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 369 ggacttcaatgtttatcgtcgtcgctaatgggttaaggaatttgtttaaggagtagtaaa 428 Query: 427 taaatggaaatatttaact 445 ||||||||||||||||||| Sbjct: 429 taaatggaaatatttaact 447 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,383 Number of Sequences: 18737 Number of extensions: 11383 Number of successful extensions: 254 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 253 Number of HSP's gapped (non-prelim): 1 length of query: 473 length of database: 41,270,998 effective HSP length: 17 effective length of query: 456 effective length of database: 40,952,469 effective search space: 18674325864 effective search space used: 18674325864 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946130|AI946130 bs21c05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs21c05 5', mRNA sequence. (488 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31639-RA feature: mRNA loc=2L:complement(6146055..6146242,6146... 922 0.0 CG31639-RB feature: mRNA loc=2L:complement(6146055..6146242,6146... 684 0.0 >CG31639-RA feature: mRNA loc=2L:complement(6146055..6146242,6146859..6147097, 6147164..6147303);ID=FBan0031639;gene_id=FBgn0051639;gen e_sym=CG31639;sym=CG31639;scaffold=AE003612;len=567 Length = 567 Score = 922 bits (465), Expect = 0.0 Identities = 474/477 (99%) Strand = Plus / Plus Query: 8 atttttatctggagctctctagtcaggccaaaacagcactgaaaatctctgaataaaaat 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19 atttttatctggagctctctagtcaggccaaaacagcactgaaaatctctgaataaaaat 78 Query: 68 tcactatccaaattccaagttaacaccttaagtttttccgtttctgaatccgtgaagcct 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79 tcactatccaaattccaagttaacaccttaagtttttccgtttctgaatccgtgaagcct 138 Query: 128 agcaacaatatgtgcggttatggatgcggtccctatggctatggaccttcgggtccttgc 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 139 agcaacaatatgtgcggttatggatgcggtccctatggctatggaccttcgggtccttgc 198 Query: 188 ggaccatggtgcggaccctggtgtagtccttgtgccctctcgctaggaccctattcctgc 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 199 ggaccatggtgcggaccctggtgtagtccttgtgccctctcgctaggaccctattcctgc 258 Query: 248 tgtggacccagtggatgcggaccaagcggcccagcgtgttggccgtatggcttgtacacc 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 259 tgtggacccagtggatgcggaccaagcggcccagcgtgttggccgtatggcttgtacacc 318 Query: 308 tgctaggcttcagaaggatatcagaaacgtgtgagccattccccaagaaatgtaatacaa 367 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | Sbjct: 319 tgctaggcttcagaaggatatcagaaacgtgtgagccattccccaagaaatttaatacca 378 Query: 368 gctcggacaatggcaattacattggatagcataataaaaatatgttcccgttgttttcat 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 379 gctcggacaatggcaattacattggatagcataataaaaatatgttcccgttgttttcat 438 Query: 428 taaagaccataataaaatgtggggaaagggagatggaaatcgcagcccctaacaaat 484 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 439 taaagaccataataaaatgtggggaaaggcagatggaaatcgcagcccctaacaaat 495 >CG31639-RB feature: mRNA loc=2L:complement(6146055..6146242,6146859..6147110, 6147164..6147303);ID=FBan0031639;gene_id=FBgn0051639;gen e_sym=CG31639;sym=CG31639;scaffold=AE003612;len=580 Length = 580 Score = 684 bits (345), Expect = 0.0 Identities = 354/357 (99%) Strand = Plus / Plus Query: 128 agcaacaatatgtgcggttatggatgcggtccctatggctatggaccttcgggtccttgc 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 152 agcaacaatatgtgcggttatggatgcggtccctatggctatggaccttcgggtccttgc 211 Query: 188 ggaccatggtgcggaccctggtgtagtccttgtgccctctcgctaggaccctattcctgc 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 212 ggaccatggtgcggaccctggtgtagtccttgtgccctctcgctaggaccctattcctgc 271 Query: 248 tgtggacccagtggatgcggaccaagcggcccagcgtgttggccgtatggcttgtacacc 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 272 tgtggacccagtggatgcggaccaagcggcccagcgtgttggccgtatggcttgtacacc 331 Query: 308 tgctaggcttcagaaggatatcagaaacgtgtgagccattccccaagaaatgtaatacaa 367 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | Sbjct: 332 tgctaggcttcagaaggatatcagaaacgtgtgagccattccccaagaaatttaatacca 391 Query: 368 gctcggacaatggcaattacattggatagcataataaaaatatgttcccgttgttttcat 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 392 gctcggacaatggcaattacattggatagcataataaaaatatgttcccgttgttttcat 451 Query: 428 taaagaccataataaaatgtggggaaagggagatggaaatcgcagcccctaacaaat 484 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 452 taaagaccataataaaatgtggggaaaggcagatggaaatcgcagcccctaacaaat 508 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8879 Number of Sequences: 18737 Number of extensions: 8879 Number of successful extensions: 180 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 177 Number of HSP's gapped (non-prelim): 3 length of query: 488 length of database: 41,270,998 effective HSP length: 17 effective length of query: 471 effective length of database: 40,952,469 effective search space: 19288612899 effective search space used: 19288612899 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946148|AI946148 bs21e01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs21e01 5', mRNA sequence. (466 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG17377-RB feature: mRNA loc=2L:complement(6793579..6793866,6793... 839 0.0 CG17377-RA feature: mRNA loc=2L:complement(6793579..6793866,6793... 831 0.0 CG17377-RC feature: mRNA loc=2L:complement(6793579..6793866,6793... 829 0.0 >CG17377-RB feature: mRNA loc=2L:complement(6793579..6793866,6793922..6794068, 6794469..6794763,6794827..6794870, 6794924..6795046);ID=FBan0017377;gene_id=FBgn0031859;gen e_sym=CG17377;sym=CG17377;scaffold=AE003615;len=897 Length = 897 Score = 839 bits (423), Expect = 0.0 Identities = 429/431 (99%) Strand = Plus / Minus Query: 28 caatttgtttatttgtaatttaatgccaaatagattccagataccaacatatgattttgt 87 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 888 caatttgtttatttgtaatttaatgccaaatagattccagataccaacatatgattttgt 829 Query: 88 gtttaaatcaagaccgtctgacgaattgcacatgggttcccaaatagctttgagcccttc 147 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 828 gtttaaatcaagaccgtctgacgaattgcacatgggttcccaaatagcttcgagcccttc 769 Query: 148 tagtaatgggtattccgcagctggctaaatcttgatttaagccaacttaaattttttatc 207 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 768 tagtaatgggtattccgcagctggctaaatcttgatttaagccaacttcaattttttatc 709 Query: 208 aaccaaaactacgtcacaaaacgacaacatgtcccgccaaggaagtggcccatatcagga 267 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 708 aaccaaaactacgtcacaaaacgacaacatgtcccgccaaggaagtggcccatatcagga 649 Query: 268 tccgatcgaaacacttgccaggaaatacttataagccacacgcgacaggatgcggatgga 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 648 tccgatcgaaacacttgccaggaaatacttataagccacacgcgacaggatgcggatgga 589 Query: 328 ggtcaaagggtcatgaaggatttggggcctggcaacagcatttggtccatggatcctacc 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 588 ggtcaaagggtcatgaaggatttggggcctggcaacagcatttggtccatggatcctacc 529 Query: 388 tctacgctcacaaagcccaggacatgctatcattgttgacggatcagcgtagtgggcata 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 528 tctacgctcacaaagcccaggacatgctatcattgttgacggatcagcgtagtgggcata 469 Query: 448 aagctcagcag 458 ||||||||||| Sbjct: 468 aagctcagcag 458 >CG17377-RA feature: mRNA loc=2L:complement(6793579..6793866,6793922..6794068, 6794461..6794763,6794827..6794870, 6794924..6795046);ID=FBan0017377;gene_id=FBgn0031859;gen e_sym=CG17377;sym=CG17377;scaffold=AE003615;len=905 Length = 905 Score = 831 bits (419), Expect = 0.0 Identities = 425/427 (99%) Strand = Plus / Minus Query: 28 caatttgtttatttgtaatttaatgccaaatagattccagataccaacatatgattttgt 87 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 896 caatttgtttatttgtaatttaatgccaaatagattccagataccaacatatgattttgt 837 Query: 88 gtttaaatcaagaccgtctgacgaattgcacatgggttcccaaatagctttgagcccttc 147 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 836 gtttaaatcaagaccgtctgacgaattgcacatgggttcccaaatagcttcgagcccttc 777 Query: 148 tagtaatgggtattccgcagctggctaaatcttgatttaagccaacttaaattttttatc 207 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 776 tagtaatgggtattccgcagctggctaaatcttgatttaagccaacttcaattttttatc 717 Query: 208 aaccaaaactacgtcacaaaacgacaacatgtcccgccaaggaagtggcccatatcagga 267 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 716 aaccaaaactacgtcacaaaacgacaacatgtcccgccaaggaagtggcccatatcagga 657 Query: 268 tccgatcgaaacacttgccaggaaatacttataagccacacgcgacaggatgcggatgga 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 656 tccgatcgaaacacttgccaggaaatacttataagccacacgcgacaggatgcggatgga 597 Query: 328 ggtcaaagggtcatgaaggatttggggcctggcaacagcatttggtccatggatcctacc 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 596 ggtcaaagggtcatgaaggatttggggcctggcaacagcatttggtccatggatcctacc 537 Query: 388 tctacgctcacaaagcccaggacatgctatcattgttgacggatcagcgtagtgggcata 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 536 tctacgctcacaaagcccaggacatgctatcattgttgacggatcagcgtagtgggcata 477 Query: 448 aagctca 454 ||||||| Sbjct: 476 aagctca 470 >CG17377-RC feature: mRNA loc=2L:complement(6793579..6793866,6793922..6794120, 6794171..6794763, 6794827..6794870);ID=FBan0017377;gene_id=FBgn0031859;gene _sym=CG17377;sym=CG17377;scaffold=AE003615;len=1124 Length = 1124 Score = 829 bits (418), Expect = 0.0 Identities = 424/426 (99%) Strand = Plus / Minus Query: 28 caatttgtttatttgtaatttaatgccaaatagattccagataccaacatatgattttgt 87 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1115 caatttgtttatttgtaatttaatgccaaatagattccagataccaacatatgattttgt 1056 Query: 88 gtttaaatcaagaccgtctgacgaattgcacatgggttcccaaatagctttgagcccttc 147 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1055 gtttaaatcaagaccgtctgacgaattgcacatgggttcccaaatagcttcgagcccttc 996 Query: 148 tagtaatgggtattccgcagctggctaaatcttgatttaagccaacttaaattttttatc 207 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 995 tagtaatgggtattccgcagctggctaaatcttgatttaagccaacttcaattttttatc 936 Query: 208 aaccaaaactacgtcacaaaacgacaacatgtcccgccaaggaagtggcccatatcagga 267 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 935 aaccaaaactacgtcacaaaacgacaacatgtcccgccaaggaagtggcccatatcagga 876 Query: 268 tccgatcgaaacacttgccaggaaatacttataagccacacgcgacaggatgcggatgga 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 875 tccgatcgaaacacttgccaggaaatacttataagccacacgcgacaggatgcggatgga 816 Query: 328 ggtcaaagggtcatgaaggatttggggcctggcaacagcatttggtccatggatcctacc 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 815 ggtcaaagggtcatgaaggatttggggcctggcaacagcatttggtccatggatcctacc 756 Query: 388 tctacgctcacaaagcccaggacatgctatcattgttgacggatcagcgtagtgggcata 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 755 tctacgctcacaaagcccaggacatgctatcattgttgacggatcagcgtagtgggcata 696 Query: 448 aagctc 453 |||||| Sbjct: 695 aagctc 690 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,288 Number of Sequences: 18737 Number of extensions: 10288 Number of successful extensions: 246 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 241 Number of HSP's gapped (non-prelim): 5 length of query: 466 length of database: 41,270,998 effective HSP length: 17 effective length of query: 449 effective length of database: 40,952,469 effective search space: 18387658581 effective search space used: 18387658581 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946155|AI946155 bs21e09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs21e09 5', mRNA sequence. (600 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG30459-RA feature: mRNA loc=2R:complement(12096297..12097062,12... 577 e-164 >CG30459-RA feature: mRNA loc=2R:complement(12096297..12097062, 12097128..12097554);ID=FBan0030459;gene_id=FBgn0050459;g ene_sym=CG30459;sym=CG30459;scaffold=AE003804;len=1193 Length = 1193 Score = 577 bits (291), Expect = e-164 Identities = 297/299 (99%) Strand = Plus / Plus Query: 104 gcatgtctgtgagtcaacttaagccggaagagcaggtggtcattgcagcctctgagaatc 163 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gcatgtctgtgagtcaacttaagccggaagagcaggtggtcattgcagcctctgagaatc 60 Query: 164 tatcaatgggtccttccccacttggagaaagccagttcagtttcgtggctgcaaacaact 223 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 tatcaatgggtcctttcccacttggagaaagccagttcagtttcgtggctgcaaacaact 120 Query: 224 gcagtgtggctctccagcggggattctacttctcccttcggatgcccgactgggctaagg 283 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 gcagtgtggctctccagcggggattctacttctcccttcggatgcccgactgggctaagg 180 Query: 284 actttaagcaccagacccagaagatactatcccatggttttgactgcccaaggagaagtt 343 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 actttaagcaccagacccagaagatactatcccatggttttgactgcccaaggagaagtt 240 Query: 344 tcaaaagcagcaacgactcggagatatcgaaattctatggagattatcgttcttaacgt 402 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 241 tcaaaagcagcaacgactcggagatatcgaaattctatggagattatcgttctgaacgt 299 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,197 Number of Sequences: 18737 Number of extensions: 12197 Number of successful extensions: 233 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 232 Number of HSP's gapped (non-prelim): 1 length of query: 600 length of database: 41,270,998 effective HSP length: 17 effective length of query: 583 effective length of database: 40,952,469 effective search space: 23875289427 effective search space used: 23875289427 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946157|AI946157 bs21e12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs21e12 5', mRNA sequence. (642 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG1394-RA feature: mRNA loc=X:complement(10911761..10912587);ID=... 1213 0.0 >CG1394-RA feature: mRNA loc=X:complement(10911761..10912587);ID=FBan0001394;gene _id=FBgn0030277;gene_sym=CG1394;sym=CG1394;scaffold=AE00 3485;len=827 Length = 827 Score = 1213 bits (612), Expect = 0.0 Identities = 612/612 (100%) Strand = Plus / Minus Query: 31 atggatttatgacatttattttatacattttcgccaagtacgagtcgtttgagctgcaca 90 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 812 atggatttatgacatttattttatacattttcgccaagtacgagtcgtttgagctgcaca 753 Query: 91 aaacggacgtttggttcgaaaactaattgtgtatgtatatggcccatatgcgattcactt 150 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 752 aaacggacgtttggttcgaaaactaattgtgtatgtatatggcccatatgcgattcactt 693 Query: 151 tagtcgttcggtgaagatgctcgtgctgtcattgttcgtggcatcgatcctaccagaagc 210 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 692 tagtcgttcggtgaagatgctcgtgctgtcattgttcgtggcatcgatcctaccagaagc 633 Query: 211 cacccttggatgcactgcctccgccgtagttcatgctcatgtccatgccgttgtaggcgc 270 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 632 cacccttggatgcactgcctccgccgtagttcatgctcatgtccatgccgttgtaggcgc 573 Query: 271 agaaggcttcgccattgtcgatgcacggttcatttcgtccgggtatgtctccatatattg 330 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 572 agaaggcttcgccattgtcgatgcacggttcatttcgtccgggtatgtctccatatattg 513 Query: 331 aacggtccacgggtggcggcactatatgctgggctcctgtaatgggcatgccacacgaca 390 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 512 aacggtccacgggtggcggcactatatgctgggctcctgtaatgggcatgccacacgaca 453 Query: 391 tggcacccggcatggcacccggcatggcacccgacatggcacccggcatgacgcccggca 450 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 452 tggcacccggcatggcacccggcatggcacccgacatggcacccggcatgacgcccggca 393 Query: 451 tggcacccggcatggcagccggcatgccaccggctcctccggcgtatggtagcatggagt 510 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 392 tggcacccggcatggcagccggcatgccaccggctcctccggcgtatggtagcatggagt 333 Query: 511 gtgcctgagctgcgccctggctaggccaacctcctagtccgccggctgatcctaatcctg 570 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 332 gtgcctgagctgcgccctggctaggccaacctcctagtccgccggctgatcctaatcctg 273 Query: 571 gtgctgctgctgttgctgatagtggtggtggagcggctgctccagcggcagagtgctgca 630 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 272 gtgctgctgctgttgctgatagtggtggtggagcggctgctccagcggcagagtgctgca 213 Query: 631 tgaagtcaccca 642 |||||||||||| Sbjct: 212 tgaagtcaccca 201 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 34,756 Number of Sequences: 18737 Number of extensions: 34756 Number of successful extensions: 4245 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 4234 Number of HSP's gapped (non-prelim): 1 length of query: 642 length of database: 41,270,998 effective HSP length: 17 effective length of query: 625 effective length of database: 40,952,469 effective search space: 25595293125 effective search space used: 25595293125 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946159|AI946159 bs21f02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs21f02 5', mRNA sequence. (346 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3633 Number of Sequences: 18737 Number of extensions: 3633 Number of successful extensions: 327 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 327 Number of HSP's gapped (non-prelim): 0 length of query: 346 length of database: 41,270,998 effective HSP length: 16 effective length of query: 330 effective length of database: 40,971,206 effective search space: 13520497980 effective search space used: 13520497980 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946166|AI946166 bs21f09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs21f09 5', mRNA sequence. (605 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31920-RB feature: mRNA loc=2L:complement(325520..326061,328593... 1178 0.0 >CG31920-RB feature: mRNA loc=2L:complement(325520..326061, 328593..329761);ID=FBan0031920;gene_id=FBgn0051920;gene_s ym=CG31920;sym=CG31920;scaffold=AE003589;len=1711 Length = 1711 Score = 1178 bits (594), Expect = 0.0 Identities = 597/598 (99%) Strand = Plus / Plus Query: 8 gtcttctcctggcttcactgtcctcagccagcggatccgagcaatccttttgacgatagc 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 716 gtcttctcctggcttcactgtcctcagccagcggatccgagcaatccttttgacgatagc 775 Query: 68 gccgtctatccagcgatcagcatagaacaggcgatggacatggcgaagccggaaaagcct 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 776 gccgtctatccagcgatcagcatagaacaggcgatggacatggcgaagccggaaaagcct 835 Query: 128 cccaaacatggcctcagacgtaagcattggtactgccccccgaaatgcggcgaggcagag 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 836 cccaaacatggcctcagacgtaagcattggtactgccccccgaaatgcggcgaggcagag 895 Query: 188 agcaagtgcaccgattacgagtgggcaaagtacaagatggatccccggcccgacaacgag 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 896 agcaagtgcaccgattacgagtgggcaaagtacaagatggatccccggcccgacaacgag 955 Query: 248 gcattccaacgcgagatggcgaaccaaaaggcctttaaacaaccggagccccgcaactac 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 956 gcattccaacgcgagatggcgaaccaaaaggcctttaaacaaccggagccccgcaactac 1015 Query: 308 gatgaactgtacaaatcgctggtaacttgtttcgttcaagacccaaatggaaagaatgat 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1016 gatgaactgtacaaatcgctggtaacttgtttcgttcaagacccaaatggaaagaatgat 1075 Query: 368 ctctgcgaagcgctggagaagtgctgcagggatcccaaagatccacctgcacagggttgc 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1076 ctctgcgaagcgctggagaagtgctgcagggatcccaaagatccacctgcacagggttgc 1135 Query: 428 agcgagttcgttccggatggcgccggaggagatgaagtttgtggttgctgcgggaaatgc 487 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 1136 agcgagttcgttccggatggcgccggaggagatgaagtttgtggttgctgcggtaaatgc 1195 Query: 488 tgctgctcaaggaagaagggaggagaatcctgcgaagtaaagcccattatgacaaggacg 547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1196 tgctgctcaaggaagaagggaggagaatcctgcgaagtaaagcccattatgacaaggacg 1255 Query: 548 gatgaatgcgatggtaaaatcagcgaagaatgctctctcccatctggcattgattcta 605 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1256 gatgaatgcgatggtaaaatcagcgaagaatgctctctcccatctggcattgattcta 1313 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,810 Number of Sequences: 18737 Number of extensions: 15810 Number of successful extensions: 365 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 364 Number of HSP's gapped (non-prelim): 1 length of query: 605 length of database: 41,270,998 effective HSP length: 17 effective length of query: 588 effective length of database: 40,952,469 effective search space: 24080051772 effective search space used: 24080051772 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946176|AI946176 bs21g07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs21g07 5', mRNA sequence. (341 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5087 Number of Sequences: 18737 Number of extensions: 5087 Number of successful extensions: 408 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 408 Number of HSP's gapped (non-prelim): 0 length of query: 341 length of database: 41,270,998 effective HSP length: 16 effective length of query: 325 effective length of database: 40,971,206 effective search space: 13315641950 effective search space used: 13315641950 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946177|AI946177 bs21g08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs21g08 5', mRNA sequence. (650 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,586 Number of Sequences: 18737 Number of extensions: 12586 Number of successful extensions: 267 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 267 Number of HSP's gapped (non-prelim): 0 length of query: 650 length of database: 41,270,998 effective HSP length: 17 effective length of query: 633 effective length of database: 40,952,469 effective search space: 25922912877 effective search space used: 25922912877 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946200|AI946200 bs22a08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs22a08 5', mRNA sequence. (421 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG11692-RA feature: mRNA loc=X:complement(20310872..20311428);ID... 781 0.0 >CG11692-RA feature: mRNA loc=X:complement(20310872..20311428);ID=FBan0011692;gene _id=FBgn0031125;gene_sym=CG11692;sym=CG11692;scaffold=AE 003570;len=557 Length = 557 Score = 781 bits (394), Expect = 0.0 Identities = 410/414 (99%), Gaps = 1/414 (0%) Strand = Plus / Minus Query: 8 cgaacacaagttcgaaaaacctcaaaacaaattattaagcggtccgttcatgtcatttca 67 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 557 cgaacacaagttcgaaaaacctcaaaacaaattattaagcggtccgttaatgtcatttca 498 Query: 68 ttcatccattatggggccatattaaatcattcccccacatcgtttggccttccgctttca 127 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 497 ttcatccatt-tggggccatattaaatcattcccccacatcgtttggccttccgctttca 439 Query: 128 agccgccataagtgaagtttccgcagctatggccacctcaaacacacccacttaggggcc 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 438 agccgccataagtgaagtttccgcagctatggccacctcaaacacacccacttaggggcc 379 Query: 188 tggtcacactaagcagttcatttcggttgaacgcgcttgggttgaaaacgcatcggattt 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 378 tggtcacactaagcagttcatttcggttgaacgcgcttgggttgaaaacgcatcggattt 319 Query: 248 tgtgccaccataattcgacccatggatggctaagctccggggtcttaggatccaaaaatg 307 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 318 tgtgccaccataattcgacccatggatggctaagctccggggtcttaggagccaaaaatg 259 Query: 308 tccaagacgccgactctggggctcccaaaggcagcgggttttggttccaagtgagtggcc 367 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 258 gccaagacgccgactctggggctcccaaaggcagcgggttttggttccaagtgagtggcc 199 Query: 368 agcgggtttggtcaaccgcaacgaagcaacatcaaattgattcgaccagtcacg 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 198 agcgggtttggtcaaccgcaacgaagcaacatcaaattgattcgaccagtcacg 145 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7528 Number of Sequences: 18737 Number of extensions: 7528 Number of successful extensions: 588 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 586 Number of HSP's gapped (non-prelim): 1 length of query: 421 length of database: 41,270,998 effective HSP length: 17 effective length of query: 404 effective length of database: 40,952,469 effective search space: 16544797476 effective search space used: 16544797476 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946203|AI946203 bs22a11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs22a11 5', mRNA sequence. (628 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG33309-RA feature: mRNA loc=2L:14788957..14790669;ID=FBan003330... 1112 0.0 >CG33309-RA feature: mRNA loc=2L:14788957..14790669;ID=FBan0033309;gene_id=FBgn005 3309;gene_sym=CG33309;sym=CG33309;scaffold=AE003645;len= 1713 Length = 1713 Score = 1112 bits (561), Expect = 0.0 Identities = 592/602 (98%), Gaps = 2/602 (0%) Strand = Plus / Plus Query: 27 ataatagccaacgatacaataaggaacagaaaagaggtcaacggtcaaataactaagcaa 86 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ataatagccaacgagacaataaggaacagaaaagaggtcaacggtcaaataactaagcaa 60 Query: 87 acacccacttgcaatgtaagccatggtctaggtcgaaagaaatcgctgactggcgtctgc 146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 acacccacttgcaatgtaagccatggtctaggtcgaaagaaatcgctgactggcgtctgc 120 Query: 147 cagaaagtaaaaaatgtcaaaaactataaacttagcgaggaaggtgcaacgacttggctt 206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 cagaaagtaaaaaatgtcaaaaactataaacttagcgaggaaggtgcaacgacttggctt 180 Query: 207 aattgccatagtcaaactattggcgtacagaaaaaacacatcagggatttgggaatagac 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 aattgccatagtcaaactattggcgtacagaaaaaacacatcagggatttgggaatagac 240 Query: 267 gtaaataannnnnnngaaggaccggtcatgaaaaatcgttcgaaacctttaacccagaaa 326 |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 gtaaataatttttttgaaggaccggtcatgaaaaatcgttcgaaacctttaacccagaaa 300 Query: 327 agaaatattttagatacacgatatgaatcgaagttgcgcaatgacaccaatgcttctgga 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 agaaatattttagatacacgatatgaatcgaagttgcgcaatgacaccaatgcttctgga 360 Query: 387 ggtgataataatatagtaactcagcaacaacctttaaaaatattctgccttcgataataa 446 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 361 ggtgataataatatagtaactcagcaacaacctttaaaaatattctgcc-tcgataataa 419 Query: 447 ggtacaaaattctattgaatcccgagatagttaaaccgatagataaaggcattctagaca 506 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 420 ggtac-aaattctattgaatcccgagatagttaaaccgatagataaaggcattctagaca 478 Query: 507 agttaaggatatcgccgcgacgcgccaatcagtcccgaagttgccgagttcagaagagta 566 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 479 agttaaggatatcgccgcgacgcgccaatcagtcccgaagttgccgagttcagaagagta 538 Query: 567 acgatagtaatttatcgaaacctttatatagcacaaccaaaagaagaagagcaatgagga 626 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 539 acgatagtaatttatcgaaacctttatatagcacaaccaaaagaagaagagcaatgagga 598 Query: 627 tg 628 || Sbjct: 599 tg 600 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,928 Number of Sequences: 18737 Number of extensions: 11928 Number of successful extensions: 263 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 259 Number of HSP's gapped (non-prelim): 1 length of query: 628 length of database: 41,270,998 effective HSP length: 17 effective length of query: 611 effective length of database: 40,952,469 effective search space: 25021958559 effective search space used: 25021958559 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946206|AI946206 bs22b03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs22b03 5', mRNA sequence. (545 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG30472-RA feature: mRNA loc=2R:complement(10486907..10487168,10... 940 0.0 >CG30472-RA feature: mRNA loc=2R:complement(10486907..10487168,10487226..10487349, 10487409..10487540);ID=FBan0030472;gene_id=FBgn0050472;g ene_sym=CG30472;sym=CG30472;scaffold=AE003810;len=518 Length = 518 Score = 940 bits (474), Expect = 0.0 Identities = 500/512 (97%) Strand = Plus / Minus Query: 34 atgtttccaaagattttatttgaatgggtggccaatatcacaattgnnnnnnnnnnctgt 93 |||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 512 atgtttccaaagattttatttgaatgggtggccaatatcacaattgttttttttttctgt 453 Query: 94 tatcctttaactttcacaaaaaactatgtaaagttatacaattaaaaaaccgcttatatc 153 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 452 tatcctttaactttcacaaaaaactatgtaaagtcatacaattaaaaaaccgcttatatc 393 Query: 154 tgttcggtattctcgatagaactgcactctttgccatctgaagtgtgcatttcggtgtat 213 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 392 tgttcggtattctcgatagaactgcactctttgccatctgaagtgtgcatttcggtgtat 333 Query: 214 gagttacactcatcttgcttgtcttggaatttacaaattaaagatgcgactatcaatgtg 273 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 332 gagttacactcatcttgcttgtcttggaatttacaaattaaagatgcgactatcaatgtg 273 Query: 274 aaatagccctccagagtcaatgatggaactattagaaaagtttgtgcaaaatttgggttc 333 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 272 aaatagccctccagagtcaatgatggaactattagaaaagtttgtgcaaaatttgggttc 213 Query: 334 cttaagttattatttatattcgatatgagagtggtgaataccgttatataaatccaaaga 393 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 212 cttaagttattatttatattcgatatgagagtggtgaataccgttatataaatccaaaga 153 Query: 394 aagaggcaaacctggtggccccatttgcttccaattagcaacagcagagaattgagaaca 453 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 152 aagaggcaaacctggtggccccatttgcttccaattagcaacagcagagaattgagaaca 93 Query: 454 gtaaccaatccgagtcccatgcaaaaacgatgacttgtatgataaagcaacattcttttg 513 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 92 gtaaccaatccgagtcccatgcaaaaacgattacttgtatgataaagcaacattcttttg 33 Query: 514 attattccttccctatcgatttttgtgatcca 545 |||||||||||||||||||||||||||||||| Sbjct: 32 attattccttccctatcgatttttgtgatcca 1 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,889 Number of Sequences: 18737 Number of extensions: 12889 Number of successful extensions: 191 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 189 Number of HSP's gapped (non-prelim): 2 length of query: 545 length of database: 41,270,998 effective HSP length: 17 effective length of query: 528 effective length of database: 40,952,469 effective search space: 21622903632 effective search space used: 21622903632 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946220|AI946220 bs22c06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs22c06 5', mRNA sequence. (179 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 853 Number of Sequences: 18737 Number of extensions: 853 Number of successful extensions: 61 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61 Number of HSP's gapped (non-prelim): 0 length of query: 179 length of database: 41,270,998 effective HSP length: 16 effective length of query: 163 effective length of database: 40,971,206 effective search space: 6678306578 effective search space used: 6678306578 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946226|AI946226 bs22c12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs22c12 5', mRNA sequence. (574 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,847 Number of Sequences: 18737 Number of extensions: 10847 Number of successful extensions: 222 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 222 Number of HSP's gapped (non-prelim): 0 length of query: 574 length of database: 41,270,998 effective HSP length: 17 effective length of query: 557 effective length of database: 40,952,469 effective search space: 22810525233 effective search space used: 22810525233 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946228|AI946228 bs22d02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs22d02 5', mRNA sequence. (472 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31226-RA feature: mRNA loc=3R:complement(14677042..14677115,14... 656 0.0 CG31226-RB feature: mRNA loc=3R:complement(14677042..14677115,14... 617 e-176 >CG31226-RA feature: mRNA loc=3R:complement(14677042..14677115,14677169..14677405, 14677458..14677543);ID=FBan0031226;gene_id=FBgn0051226;g ene_sym=CG31226;sym=CG31226;scaffold=AE003723;len=397 Length = 397 Score = 656 bits (331), Expect = 0.0 Identities = 347/355 (97%) Strand = Plus / Minus Query: 33 attttgaacactttatttaattaacatttctctcttcatgtgggacggtaatttagtttc 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 395 attttgaacactttatttaattaacatttctctcttcatgtgggacggtaatttagtttc 336 Query: 93 cttgcaagagatgttcagcaattccaatttttccgtgtgagaaagtagctcaatcctaca 152 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 335 cttgcaagagatgttcagcaattccaatttttccgtgtgagaaagtagctcaatcctaca 276 Query: 153 gctcatgacaaaaactagcaacatccacctctccagaaaccgggtccacttgctccgcac 212 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 275 gctcatgacaaaaactagcaacatccacctctccagaaaccgggtccacttgctccgcac 216 Query: 213 caggagttaaatggtccgttgtagggtccaaagcacggatcgtagaatccacttggtcca 272 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 215 caggagttaaatggtccgttgtagggtccaaagcacggatcgtagaatccacttggtcca 156 Query: 273 ctgcctccgcagggacacaaggcggcgcaaggatagcaaggatagctgcacatggtgaat 332 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 155 ctgcctccgcagggacacaaggcggcgcaaggatagcaaggatagctgcacatggtgaat 96 Query: 333 tgatttgtcgttacttgttttgccggnnnnnnnnctaggaaatttatttaggaat 387 |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 95 tgatttgtcgttacttgttttgccggaaaaaaaactaggaaatttatttaggaat 41 >CG31226-RB feature: mRNA loc=3R:complement(14677042..14677115,14677169..14677405, 14677463..14677543);ID=FBan0031226;gene_id=FBgn0051226;g ene_sym=CG31226;sym=CG31226;scaffold=AE003723;len=392 Length = 392 Score = 617 bits (311), Expect = e-176 Identities = 342/355 (96%), Gaps = 5/355 (1%) Strand = Plus / Minus Query: 33 attttgaacactttatttaattaacatttctctcttcatgtgggacggtaatttagtttc 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 390 attttgaacactttatttaattaacatttctctcttcatgtgggacggtaatttagtttc 331 Query: 93 cttgcaagagatgttcagcaattccaatttttccgtgtgagaaagtagctcaatcctaca 152 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 330 cttgcaagagatgttcagcaattccaatttttccgtgtgagaaagtagctcaatcctaca 271 Query: 153 gctcatgacaaaaactagcaacatccacctctccagaaaccgggtccacttgctccgcac 212 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 270 gctcatgacaaaaactagcaacatccacctctccagaaaccgggtccacttgctccgcac 211 Query: 213 caggagttaaatggtccgttgtagggtccaaagcacggatcgtagaatccacttggtcca 272 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 210 caggagttaaatggtccgttgtagggtccaaagcacggatcgtagaatccacttggtcca 151 Query: 273 ctgcctccgcagggacacaaggcggcgcaaggatagcaaggatagctgcacatggtgaat 332 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 150 ctgcctccgcagggacacaaggcggcgcaaggatagcaaggatagctgcacatggtgaat 91 Query: 333 tgatttgtcgttacttgttttgccggnnnnnnnnctaggaaatttatttaggaat 387 |||||||| ||||||||||||| ||||||||||||||||||||| Sbjct: 90 tgatttgt-----cttgttttgccggaaaaaaaactaggaaatttatttaggaat 41 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7970 Number of Sequences: 18737 Number of extensions: 7970 Number of successful extensions: 184 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 180 Number of HSP's gapped (non-prelim): 4 length of query: 472 length of database: 41,270,998 effective HSP length: 17 effective length of query: 455 effective length of database: 40,952,469 effective search space: 18633373395 effective search space used: 18633373395 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946232|AI946232 bs22d06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs22d06 5', mRNA sequence. (462 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Eno-RE feature: mRNA loc=2L:complement(1726636..1728320,1729311.... 422 e-117 Eno-RD feature: mRNA loc=2L:complement(1726636..1728320,1729311.... 422 e-117 Eno-RC feature: mRNA loc=2L:complement(1726636..1728320,1729311.... 422 e-117 Eno-RB feature: mRNA loc=2L:complement(1726636..1728320,1729311.... 422 e-117 Eno-RA feature: mRNA loc=2L:complement(1726636..1728320,1729311.... 422 e-117 >Eno-RE feature: mRNA loc=2L:complement(1726636..1728320,1729311..1729545, 1729719..1729897, 1730940..1731243);ID=FBan0017654;gene_id=FBgn0000579;gene _sym=Eno;sym=CG17654;scaffold=AE003585;len=2403 Length = 2403 Score = 422 bits (213), Expect = e-117 Identities = 219/221 (99%) Strand = Plus / Minus Query: 242 tttggtgtttgtgtagatcaatttataatttcataacgattacagcgattacattgaaga 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2403 tttggtgtttgtgtagatcaatttataatttcataacgattacagcgattacattgaaga 2344 Query: 302 tattcaaagctctcggcaactgaacgaatatcttgcacatagtgttttttatgcttttgt 361 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 2343 tattcaaagctctcggcaactgaacgaatatcttgcacatagtgttttttattcttttgt 2284 Query: 362 ttataaataatgattagatcaaggtttagcattaattaataatgtctaagaacgaagcat 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2283 ttataaataatgattagatcaaggtttagcattaattaataatgtctaagaacgaagcat 2224 Query: 422 agagacagcaaatgggattggtagtttaattctgatgtatt 462 |||||||||||||||| |||||||||||||||||||||||| Sbjct: 2223 agagacagcaaatgggtttggtagtttaattctgatgtatt 2183 >Eno-RD feature: mRNA loc=2L:complement(1726636..1728320,1729311..1729545, 1729719..1729897, 1730027..1730080);ID=FBan0017654;gene_id=FBgn0000579;gene _sym=Eno;sym=CG17654;scaffold=AE003585;len=2153 Length = 2153 Score = 422 bits (213), Expect = e-117 Identities = 219/221 (99%) Strand = Plus / Minus Query: 242 tttggtgtttgtgtagatcaatttataatttcataacgattacagcgattacattgaaga 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2153 tttggtgtttgtgtagatcaatttataatttcataacgattacagcgattacattgaaga 2094 Query: 302 tattcaaagctctcggcaactgaacgaatatcttgcacatagtgttttttatgcttttgt 361 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 2093 tattcaaagctctcggcaactgaacgaatatcttgcacatagtgttttttattcttttgt 2034 Query: 362 ttataaataatgattagatcaaggtttagcattaattaataatgtctaagaacgaagcat 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2033 ttataaataatgattagatcaaggtttagcattaattaataatgtctaagaacgaagcat 1974 Query: 422 agagacagcaaatgggattggtagtttaattctgatgtatt 462 |||||||||||||||| |||||||||||||||||||||||| Sbjct: 1973 agagacagcaaatgggtttggtagtttaattctgatgtatt 1933 >Eno-RC feature: mRNA loc=2L:complement(1726636..1728320,1729311..1729545, 1729719..1729897, 1729968..1730124);ID=FBan0017654;gene_id=FBgn0000579;gene _sym=Eno;sym=CG17654;scaffold=AE003585;len=2256 Length = 2256 Score = 422 bits (213), Expect = e-117 Identities = 219/221 (99%) Strand = Plus / Minus Query: 242 tttggtgtttgtgtagatcaatttataatttcataacgattacagcgattacattgaaga 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2256 tttggtgtttgtgtagatcaatttataatttcataacgattacagcgattacattgaaga 2197 Query: 302 tattcaaagctctcggcaactgaacgaatatcttgcacatagtgttttttatgcttttgt 361 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 2196 tattcaaagctctcggcaactgaacgaatatcttgcacatagtgttttttattcttttgt 2137 Query: 362 ttataaataatgattagatcaaggtttagcattaattaataatgtctaagaacgaagcat 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2136 ttataaataatgattagatcaaggtttagcattaattaataatgtctaagaacgaagcat 2077 Query: 422 agagacagcaaatgggattggtagtttaattctgatgtatt 462 |||||||||||||||| |||||||||||||||||||||||| Sbjct: 2076 agagacagcaaatgggtttggtagtttaattctgatgtatt 2036 >Eno-RB feature: mRNA loc=2L:complement(1726636..1728320,1729311..1729545, 1729719..1729897, 1731215..1731294);ID=FBan0017654;gene_id=FBgn0000579;gene _sym=Eno;sym=CG17654;scaffold=AE003585;len=2179 Length = 2179 Score = 422 bits (213), Expect = e-117 Identities = 219/221 (99%) Strand = Plus / Minus Query: 242 tttggtgtttgtgtagatcaatttataatttcataacgattacagcgattacattgaaga 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2179 tttggtgtttgtgtagatcaatttataatttcataacgattacagcgattacattgaaga 2120 Query: 302 tattcaaagctctcggcaactgaacgaatatcttgcacatagtgttttttatgcttttgt 361 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 2119 tattcaaagctctcggcaactgaacgaatatcttgcacatagtgttttttattcttttgt 2060 Query: 362 ttataaataatgattagatcaaggtttagcattaattaataatgtctaagaacgaagcat 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2059 ttataaataatgattagatcaaggtttagcattaattaataatgtctaagaacgaagcat 2000 Query: 422 agagacagcaaatgggattggtagtttaattctgatgtatt 462 |||||||||||||||| |||||||||||||||||||||||| Sbjct: 1999 agagacagcaaatgggtttggtagtttaattctgatgtatt 1959 >Eno-RA feature: mRNA loc=2L:complement(1726636..1728320, 1729311..1729378);ID=FBan0017654;gene_id=FBgn0000579;gene _sym=Eno;sym=CG17654;scaffold=AE003585;len=1753 Length = 1753 Score = 422 bits (213), Expect = e-117 Identities = 219/221 (99%) Strand = Plus / Minus Query: 242 tttggtgtttgtgtagatcaatttataatttcataacgattacagcgattacattgaaga 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1753 tttggtgtttgtgtagatcaatttataatttcataacgattacagcgattacattgaaga 1694 Query: 302 tattcaaagctctcggcaactgaacgaatatcttgcacatagtgttttttatgcttttgt 361 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 1693 tattcaaagctctcggcaactgaacgaatatcttgcacatagtgttttttattcttttgt 1634 Query: 362 ttataaataatgattagatcaaggtttagcattaattaataatgtctaagaacgaagcat 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1633 ttataaataatgattagatcaaggtttagcattaattaataatgtctaagaacgaagcat 1574 Query: 422 agagacagcaaatgggattggtagtttaattctgatgtatt 462 |||||||||||||||| |||||||||||||||||||||||| Sbjct: 1573 agagacagcaaatgggtttggtagtttaattctgatgtatt 1533 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8935 Number of Sequences: 18737 Number of extensions: 8935 Number of successful extensions: 197 Number of sequences better than 1.0e-100: 5 Number of HSP's better than 0.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 192 Number of HSP's gapped (non-prelim): 5 length of query: 462 length of database: 41,270,998 effective HSP length: 17 effective length of query: 445 effective length of database: 40,952,469 effective search space: 18223848705 effective search space used: 18223848705 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946239|AI946239 bs22e02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs22e02 5', mRNA sequence. (379 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG6790-RA feature: mRNA loc=3R:complement(7401639..7403640,74037... 680 0.0 CG14709-RA feature: mRNA loc=3R:join(7394990..7395574,7396767..7... 680 0.0 >CG6790-RA feature: mRNA loc=3R:complement(7401639..7403640, 7403703..7404485);ID=FBan0006790;gene_id=FBgn0037915;gene _sym=CG6790;sym=CG6790;scaffold=AE003692;len=2785 Length = 2785 Score = 680 bits (343), Expect = 0.0 Identities = 343/343 (100%) Strand = Plus / Plus Query: 17 ctccagtttgatgctcatttgcaacgccgtcgttttgttcttcgttgtgtttgttccgca 76 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2441 ctccagtttgatgctcatttgcaacgccgtcgttttgttcttcgttgtgtttgttccgca 2500 Query: 77 taacgcctattggccaatggcacatccatccgtagttcatgcacttctggcccaattgac 136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2501 taacgcctattggccaatggcacatccatccgtagttcatgcacttctggcccaattgac 2560 Query: 137 tgtcatcctgatcttggcttgcgaatccatagtgaccatcttctttcgtagacttaacat 196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2561 tgtcatcctgatcttggcttgcgaatccatagtgaccatcttctttcgtagacttaacat 2620 Query: 197 gaacagatgttcagactggagacaagaagcggatgaatttgaatccagctaccccccgat 256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2621 gaacagatgttcagactggagacaagaagcggatgaatttgaatccagctaccccccgat 2680 Query: 257 taccacaactgctgtctaattgtctaatcaaagtgctaagaaattataatgtaaaacaaa 316 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2681 taccacaactgctgtctaattgtctaatcaaagtgctaagaaattataatgtaaaacaaa 2740 Query: 317 tttatggtctatatatttagaactttataaaactttcacttct 359 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2741 tttatggtctatatatttagaactttataaaactttcacttct 2783 >CG14709-RA feature: mRNA loc=3R:join(7394990..7395574,7396767..7396852, 7396942..7397062,7397126..7397301,7397355..7397545, 7398008..7399602,7399670..7401311, 7401375..7401993);ID=FBan0014709;gene_id=FBgn0025701;gene _sym=CG14709;sym=CG14709;scaffold=AE003692;len=5015 Length = 5015 Score = 680 bits (343), Expect = 0.0 Identities = 343/343 (100%) Strand = Plus / Minus Query: 17 ctccagtttgatgctcatttgcaacgccgtcgttttgttcttcgttgtgtttgttccgca 76 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5005 ctccagtttgatgctcatttgcaacgccgtcgttttgttcttcgttgtgtttgttccgca 4946 Query: 77 taacgcctattggccaatggcacatccatccgtagttcatgcacttctggcccaattgac 136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4945 taacgcctattggccaatggcacatccatccgtagttcatgcacttctggcccaattgac 4886 Query: 137 tgtcatcctgatcttggcttgcgaatccatagtgaccatcttctttcgtagacttaacat 196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4885 tgtcatcctgatcttggcttgcgaatccatagtgaccatcttctttcgtagacttaacat 4826 Query: 197 gaacagatgttcagactggagacaagaagcggatgaatttgaatccagctaccccccgat 256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4825 gaacagatgttcagactggagacaagaagcggatgaatttgaatccagctaccccccgat 4766 Query: 257 taccacaactgctgtctaattgtctaatcaaagtgctaagaaattataatgtaaaacaaa 316 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4765 taccacaactgctgtctaattgtctaatcaaagtgctaagaaattataatgtaaaacaaa 4706 Query: 317 tttatggtctatatatttagaactttataaaactttcacttct 359 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4705 tttatggtctatatatttagaactttataaaactttcacttct 4663 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7522 Number of Sequences: 18737 Number of extensions: 7522 Number of successful extensions: 526 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 524 Number of HSP's gapped (non-prelim): 2 length of query: 379 length of database: 41,270,998 effective HSP length: 17 effective length of query: 362 effective length of database: 40,952,469 effective search space: 14824793778 effective search space used: 14824793778 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946242|AI946242 bs22e06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs22e06 5', mRNA sequence. (464 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31003-RA feature: mRNA loc=3R:27187515..27189155;ID=FBan003100... 910 0.0 >CG31003-RA feature: mRNA loc=3R:27187515..27189155;ID=FBan0031003;gene_id=FBgn0051 003;gene_sym=CG31003;sym=CG31003;scaffold=AE003778;len=16 41 Length = 1641 Score = 910 bits (459), Expect = 0.0 Identities = 459/459 (100%) Strand = Plus / Plus Query: 6 agactatgagaaaaccatcgagccggatacaatgccgctgctgctgccgcgggctcaggg 65 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1158 agactatgagaaaaccatcgagccggatacaatgccgctgctgctgccgcgggctcaggg 1217 Query: 66 ttccagcaccaccaaggagccaagtgctgcccacaggaaccgcaatacagccggggagga 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1218 ttccagcaccaccaaggagccaagtgctgcccacaggaaccgcaatacagccggggagga 1277 Query: 126 gagccctcggaaaacggaggacagccaaaaaccggcgacagcagcgctctcaaagtcccc 185 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1278 gagccctcggaaaacggaggacagccaaaaaccggcgacagcagcgctctcaaagtcccc 1337 Query: 186 tggaccttcgggcaaggcgctcgaatccccgccaggctttttgcaacacgatttgggaaa 245 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1338 tggaccttcgggcaaggcgctcgaatccccgccaggctttttgcaacacgatttgggaaa 1397 Query: 246 cggcgaccatgtggctgtgggcaccatgccaatggagcccctgaccctggagcagaacca 305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1398 cggcgaccatgtggctgtgggcaccatgccaatggagcccctgaccctggagcagaacca 1457 Query: 306 cttcgcagcagagagctatgcagtcggcgaggatgccgaggataatttagaagaggatgt 365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1458 cttcgcagcagagagctatgcagtcggcgaggatgccgaggataatttagaagaggatgt 1517 Query: 366 cggtgatgaaaacgactatgactacgatgatggtgggcagtgcaatagcacctacatcag 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1518 cggtgatgaaaacgactatgactacgatgatggtgggcagtgcaatagcacctacatcag 1577 Query: 426 cgacgacatggatgaggcctccgagtcggatgacgacga 464 ||||||||||||||||||||||||||||||||||||||| Sbjct: 1578 cgacgacatggatgaggcctccgagtcggatgacgacga 1616 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 24,839 Number of Sequences: 18737 Number of extensions: 24839 Number of successful extensions: 882 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 881 Number of HSP's gapped (non-prelim): 1 length of query: 464 length of database: 41,270,998 effective HSP length: 17 effective length of query: 447 effective length of database: 40,952,469 effective search space: 18305753643 effective search space used: 18305753643 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946243|AI946243 bs22e07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs22e07 5', mRNA sequence. (427 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9204 Number of Sequences: 18737 Number of extensions: 9204 Number of successful extensions: 754 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 754 Number of HSP's gapped (non-prelim): 0 length of query: 427 length of database: 41,270,998 effective HSP length: 17 effective length of query: 410 effective length of database: 40,952,469 effective search space: 16790512290 effective search space used: 16790512290 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946246|AI946246 bs22e10.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs22e10 5', mRNA sequence. (569 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,056 Number of Sequences: 18737 Number of extensions: 15056 Number of successful extensions: 367 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 367 Number of HSP's gapped (non-prelim): 0 length of query: 569 length of database: 41,270,998 effective HSP length: 17 effective length of query: 552 effective length of database: 40,952,469 effective search space: 22605762888 effective search space used: 22605762888 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946254|AI946254 bs22f07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs22f07 5', mRNA sequence. (554 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,647 Number of Sequences: 18737 Number of extensions: 14647 Number of successful extensions: 598 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 598 Number of HSP's gapped (non-prelim): 0 length of query: 554 length of database: 41,270,998 effective HSP length: 17 effective length of query: 537 effective length of database: 40,952,469 effective search space: 21991475853 effective search space used: 21991475853 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946260|AI946260 bs22g02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs22g02 5', mRNA sequence. (439 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9398 Number of Sequences: 18737 Number of extensions: 9398 Number of successful extensions: 771 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 771 Number of HSP's gapped (non-prelim): 0 length of query: 439 length of database: 41,270,998 effective HSP length: 17 effective length of query: 422 effective length of database: 40,952,469 effective search space: 17281941918 effective search space used: 17281941918 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946285|AI946285 bs23a07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs23a07 5', mRNA sequence. (278 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG30355-RA feature: mRNA loc=2R:complement(3739886..3740183,3740... 537 e-152 >CG30355-RA feature: mRNA loc=2R:complement(3739886..3740183, 3740241..3740695);ID=FBan0030355;gene_id=FBgn0050355;gen e_sym=CG30355;sym=CG30355;scaffold=AE003836;len=753 Length = 753 Score = 537 bits (271), Expect = e-152 Identities = 271/271 (100%) Strand = Plus / Plus Query: 8 tcggtaaacagaaagaactctttccaaattgtgtagggtgattttttagttcagacacca 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 55 tcggtaaacagaaagaactctttccaaattgtgtagggtgattttttagttcagacacca 114 Query: 68 ttcgaaatggctgaagtcctagaggaattcatcaccctaacgcccttgacttgtgtgcaa 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 115 ttcgaaatggctgaagtcctagaggaattcatcaccctaacgcccttgacttgtgtgcaa 174 Query: 128 caatgcaatgctttactaggctcaacatcaggaaagccgagaagctgctccgtatttttt 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 175 caatgcaatgctttactaggctcaacatcaggaaagccgagaagctgctccgtatttttt 234 Query: 188 acactatttggcgtatactgcggcgttctcatctttcgggcgtatcgcacatattcctct 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 235 acactatttggcgtatactgcggcgttctcatctttcgggcgtatcgcacatattcctct 294 Query: 248 aagcaagaaagagacgaggaaaagataaccg 278 ||||||||||||||||||||||||||||||| Sbjct: 295 aagcaagaaagagacgaggaaaagataaccg 325 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4672 Number of Sequences: 18737 Number of extensions: 4672 Number of successful extensions: 287 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 286 Number of HSP's gapped (non-prelim): 1 length of query: 278 length of database: 41,270,998 effective HSP length: 16 effective length of query: 262 effective length of database: 40,971,206 effective search space: 10734455972 effective search space used: 10734455972 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946288|AI946288 bs23b01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs23b01 5', mRNA sequence. (475 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5984 Number of Sequences: 18737 Number of extensions: 5984 Number of successful extensions: 84 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84 Number of HSP's gapped (non-prelim): 0 length of query: 475 length of database: 41,270,998 effective HSP length: 17 effective length of query: 458 effective length of database: 40,952,469 effective search space: 18756230802 effective search space used: 18756230802 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946289|AI946289 bs23b02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs23b02 5', mRNA sequence. (462 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8292 Number of Sequences: 18737 Number of extensions: 8292 Number of successful extensions: 164 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 164 Number of HSP's gapped (non-prelim): 0 length of query: 462 length of database: 41,270,998 effective HSP length: 17 effective length of query: 445 effective length of database: 40,952,469 effective search space: 18223848705 effective search space used: 18223848705 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946318|AI946318 bs23e07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs23e07 5', mRNA sequence. (443 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG30355-RA feature: mRNA loc=2R:complement(3739886..3740183,3740... 848 0.0 >CG30355-RA feature: mRNA loc=2R:complement(3739886..3740183, 3740241..3740695);ID=FBan0030355;gene_id=FBgn0050355;gen e_sym=CG30355;sym=CG30355;scaffold=AE003836;len=753 Length = 753 Score = 848 bits (428), Expect = 0.0 Identities = 434/436 (99%) Strand = Plus / Plus Query: 8 ggtaaacagaaagaactctttccaaattgtgtagggtgattttttagttcagacaccatt 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 57 ggtaaacagaaagaactctttccaaattgtgtagggtgattttttagttcagacaccatt 116 Query: 68 cgaaatggctgaagtcctagaggaattcatcaccctaacgcccttgacttgtgtgcaaca 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 117 cgaaatggctgaagtcctagaggaattcatcaccctaacgcccttgacttgtgtgcaaca 176 Query: 128 atgcaatgctttactaggctcaacatcaggaaagccgagaagctgctccgtattttttac 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 177 atgcaatgctttactaggctcaacatcaggaaagccgagaagctgctccgtattttttac 236 Query: 188 actatttggcgtatactgcggcgttctcatctttcgggcgtatcgcacatattcctctaa 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 237 actatttggcgtatactgcggcgttctcatctttcgggcgtatcgcacatattcctctaa 296 Query: 248 gcaagaaagagacgaggaaaagataaccgaaggagttacccttgaggctaaggaggaaga 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 297 gcaagaaagagacgaggaaaagataaccgaaggagttacccttgaggctaaggaggaaga 356 Query: 308 tttgatcataggacctggtttcagtcttgtgaacgaatatgttgaacaaacgaagccgat 367 |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| Sbjct: 357 tttgatcataggacctggttccagtcttgtgaacgaatatgtagaacaaacgaagccgat 416 Query: 368 tctgttgcaacccgtcggtttttccagtactgacatgagatggcgctattgcaaccactt 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 417 tctgttgcaacccgtcggtttttccagtactgacatgagatggcgctattgcaaccactt 476 Query: 428 gccggaagcagaatta 443 |||||||||||||||| Sbjct: 477 gccggaagcagaatta 492 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7178 Number of Sequences: 18737 Number of extensions: 7178 Number of successful extensions: 447 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 446 Number of HSP's gapped (non-prelim): 1 length of query: 443 length of database: 41,270,998 effective HSP length: 17 effective length of query: 426 effective length of database: 40,952,469 effective search space: 17445751794 effective search space used: 17445751794 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946325|AI946325 bs23f04.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs23f04 5', mRNA sequence. (478 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8768 Number of Sequences: 18737 Number of extensions: 8768 Number of successful extensions: 162 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 162 Number of HSP's gapped (non-prelim): 0 length of query: 478 length of database: 41,270,998 effective HSP length: 17 effective length of query: 461 effective length of database: 40,952,469 effective search space: 18879088209 effective search space used: 18879088209 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946329|AI946329 bs23f09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs23f09 5', mRNA sequence. (144 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 0 Number of Sequences: 18737 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 144 length of database: 41,270,998 effective HSP length: 16 effective length of query: 128 effective length of database: 40,971,206 effective search space: 5244314368 effective search space used: 5244314368 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946335|AI946335 bs23g04.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs23g04 5', mRNA sequence. (476 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31363-RH feature: mRNA loc=3R:complement(7416128..7417047,7418... 622 e-178 CG31363-RE feature: mRNA loc=3R:complement(7416128..7417047,7418... 622 e-178 CG31363-RD feature: mRNA loc=3R:complement(7416128..7417047,7418... 622 e-178 CG31363-RC feature: mRNA loc=3R:complement(7416128..7417047,7418... 622 e-178 CG31363-RB feature: mRNA loc=3R:complement(7416128..7417047,7417... 622 e-178 CG31363-RA feature: mRNA loc=3R:complement(7416128..7417047,7417... 622 e-178 >CG31363-RH feature: mRNA loc=3R:complement(7416128..7417047,7418107..7418364, 7419062..7419094,7419373..7419506, 7445444..7445674);ID=FBan0031363;gene_id=FBgn0051363;gene _sym=CG31363;sym=CG31363;scaffold=AE003692;len=1576 Length = 1576 Score = 622 bits (314), Expect = e-178 Identities = 314/314 (100%) Strand = Plus / Plus Query: 163 tcatcaacccggtgtgtgcttacgtgtgaagcaagcgagaagcaaggatgcgagcggtgg 222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1257 tcatcaacccggtgtgtgcttacgtgtgaagcaagcgagaagcaaggatgcgagcggtgg 1316 Query: 223 cggcctgttggagtcctttgatcacacatggattttattttagttgctactacacgccac 282 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1317 cggcctgttggagtcctttgatcacacatggattttattttagttgctactacacgccac 1376 Query: 283 atatatttatatttataccaactgcattcacacgaacactcacgaaaacacatacataca 342 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1377 atatatttatatttataccaactgcattcacacgaacactcacgaaaacacatacataca 1436 Query: 343 tacattataaacattgtattacattacattaaatatgtaatttaaacggtacgacagcac 402 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1437 tacattataaacattgtattacattacattaaatatgtaatttaaacggtacgacagcac 1496 Query: 403 tttctaatgtgcacgtgctaattaagtgtaaaaatacaaaattcaagcgcgaatatttgt 462 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1497 tttctaatgtgcacgtgctaattaagtgtaaaaatacaaaattcaagcgcgaatatttgt 1556 Query: 463 tcaataaaaacctt 476 |||||||||||||| Sbjct: 1557 tcaataaaaacctt 1570 >CG31363-RE feature: mRNA loc=3R:complement(7416128..7417047,7418107..7418364, 7419062..7419094,7419373..7419506,7429882..7430023, 7430326..7430491);ID=FBan0031363;gene_id=FBgn0051363;gene _sym=CG31363;sym=CG31363;scaffold=AE003692;len=1653 Length = 1653 Score = 622 bits (314), Expect = e-178 Identities = 314/314 (100%) Strand = Plus / Plus Query: 163 tcatcaacccggtgtgtgcttacgtgtgaagcaagcgagaagcaaggatgcgagcggtgg 222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1334 tcatcaacccggtgtgtgcttacgtgtgaagcaagcgagaagcaaggatgcgagcggtgg 1393 Query: 223 cggcctgttggagtcctttgatcacacatggattttattttagttgctactacacgccac 282 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1394 cggcctgttggagtcctttgatcacacatggattttattttagttgctactacacgccac 1453 Query: 283 atatatttatatttataccaactgcattcacacgaacactcacgaaaacacatacataca 342 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1454 atatatttatatttataccaactgcattcacacgaacactcacgaaaacacatacataca 1513 Query: 343 tacattataaacattgtattacattacattaaatatgtaatttaaacggtacgacagcac 402 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1514 tacattataaacattgtattacattacattaaatatgtaatttaaacggtacgacagcac 1573 Query: 403 tttctaatgtgcacgtgctaattaagtgtaaaaatacaaaattcaagcgcgaatatttgt 462 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1574 tttctaatgtgcacgtgctaattaagtgtaaaaatacaaaattcaagcgcgaatatttgt 1633 Query: 463 tcaataaaaacctt 476 |||||||||||||| Sbjct: 1634 tcaataaaaacctt 1647 >CG31363-RD feature: mRNA loc=3R:complement(7416128..7417047,7418107..7418364, 7419373..7419506, 7445444..7445674);ID=FBan0031363;gene_id=FBgn0051363;gene _sym=CG31363;sym=CG31363;scaffold=AE003692;len=1543 Length = 1543 Score = 622 bits (314), Expect = e-178 Identities = 314/314 (100%) Strand = Plus / Plus Query: 163 tcatcaacccggtgtgtgcttacgtgtgaagcaagcgagaagcaaggatgcgagcggtgg 222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1224 tcatcaacccggtgtgtgcttacgtgtgaagcaagcgagaagcaaggatgcgagcggtgg 1283 Query: 223 cggcctgttggagtcctttgatcacacatggattttattttagttgctactacacgccac 282 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1284 cggcctgttggagtcctttgatcacacatggattttattttagttgctactacacgccac 1343 Query: 283 atatatttatatttataccaactgcattcacacgaacactcacgaaaacacatacataca 342 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1344 atatatttatatttataccaactgcattcacacgaacactcacgaaaacacatacataca 1403 Query: 343 tacattataaacattgtattacattacattaaatatgtaatttaaacggtacgacagcac 402 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1404 tacattataaacattgtattacattacattaaatatgtaatttaaacggtacgacagcac 1463 Query: 403 tttctaatgtgcacgtgctaattaagtgtaaaaatacaaaattcaagcgcgaatatttgt 462 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1464 tttctaatgtgcacgtgctaattaagtgtaaaaatacaaaattcaagcgcgaatatttgt 1523 Query: 463 tcaataaaaacctt 476 |||||||||||||| Sbjct: 1524 tcaataaaaacctt 1537 >CG31363-RC feature: mRNA loc=3R:complement(7416128..7417047,7418107..7418364, 7419373..7419506,7429882..7429979, 7430326..7430491);ID=FBan0031363;gene_id=FBgn0051363;gene _sym=CG31363;sym=CG31363;scaffold=AE003692;len=1576 Length = 1576 Score = 622 bits (314), Expect = e-178 Identities = 314/314 (100%) Strand = Plus / Plus Query: 163 tcatcaacccggtgtgtgcttacgtgtgaagcaagcgagaagcaaggatgcgagcggtgg 222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1257 tcatcaacccggtgtgtgcttacgtgtgaagcaagcgagaagcaaggatgcgagcggtgg 1316 Query: 223 cggcctgttggagtcctttgatcacacatggattttattttagttgctactacacgccac 282 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1317 cggcctgttggagtcctttgatcacacatggattttattttagttgctactacacgccac 1376 Query: 283 atatatttatatttataccaactgcattcacacgaacactcacgaaaacacatacataca 342 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1377 atatatttatatttataccaactgcattcacacgaacactcacgaaaacacatacataca 1436 Query: 343 tacattataaacattgtattacattacattaaatatgtaatttaaacggtacgacagcac 402 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1437 tacattataaacattgtattacattacattaaatatgtaatttaaacggtacgacagcac 1496 Query: 403 tttctaatgtgcacgtgctaattaagtgtaaaaatacaaaattcaagcgcgaatatttgt 462 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1497 tttctaatgtgcacgtgctaattaagtgtaaaaatacaaaattcaagcgcgaatatttgt 1556 Query: 463 tcaataaaaacctt 476 |||||||||||||| Sbjct: 1557 tcaataaaaacctt 1570 >CG31363-RB feature: mRNA loc=3R:complement(7416128..7417047,7417241..7417651, 7417735..7417984);ID=FBan0031363;gene_id=FBgn0051363;gene _sym=CG31363;sym=CG31363;scaffold=AE003692;len=1581 Length = 1581 Score = 622 bits (314), Expect = e-178 Identities = 314/314 (100%) Strand = Plus / Plus Query: 163 tcatcaacccggtgtgtgcttacgtgtgaagcaagcgagaagcaaggatgcgagcggtgg 222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1262 tcatcaacccggtgtgtgcttacgtgtgaagcaagcgagaagcaaggatgcgagcggtgg 1321 Query: 223 cggcctgttggagtcctttgatcacacatggattttattttagttgctactacacgccac 282 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1322 cggcctgttggagtcctttgatcacacatggattttattttagttgctactacacgccac 1381 Query: 283 atatatttatatttataccaactgcattcacacgaacactcacgaaaacacatacataca 342 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1382 atatatttatatttataccaactgcattcacacgaacactcacgaaaacacatacataca 1441 Query: 343 tacattataaacattgtattacattacattaaatatgtaatttaaacggtacgacagcac 402 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1442 tacattataaacattgtattacattacattaaatatgtaatttaaacggtacgacagcac 1501 Query: 403 tttctaatgtgcacgtgctaattaagtgtaaaaatacaaaattcaagcgcgaatatttgt 462 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1502 tttctaatgtgcacgtgctaattaagtgtaaaaatacaaaattcaagcgcgaatatttgt 1561 Query: 463 tcaataaaaacctt 476 |||||||||||||| Sbjct: 1562 tcaataaaaacctt 1575 >CG31363-RA feature: mRNA loc=3R:complement(7416128..7417047,7417735..7417752, 7418107..7418364,7419373..7419506, 7445444..7445674);ID=FBan0031363;gene_id=FBgn0051363;gene _sym=CG31363;sym=CG31363;scaffold=AE003692;len=1561 Length = 1561 Score = 622 bits (314), Expect = e-178 Identities = 314/314 (100%) Strand = Plus / Plus Query: 163 tcatcaacccggtgtgtgcttacgtgtgaagcaagcgagaagcaaggatgcgagcggtgg 222 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1242 tcatcaacccggtgtgtgcttacgtgtgaagcaagcgagaagcaaggatgcgagcggtgg 1301 Query: 223 cggcctgttggagtcctttgatcacacatggattttattttagttgctactacacgccac 282 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1302 cggcctgttggagtcctttgatcacacatggattttattttagttgctactacacgccac 1361 Query: 283 atatatttatatttataccaactgcattcacacgaacactcacgaaaacacatacataca 342 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1362 atatatttatatttataccaactgcattcacacgaacactcacgaaaacacatacataca 1421 Query: 343 tacattataaacattgtattacattacattaaatatgtaatttaaacggtacgacagcac 402 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1422 tacattataaacattgtattacattacattaaatatgtaatttaaacggtacgacagcac 1481 Query: 403 tttctaatgtgcacgtgctaattaagtgtaaaaatacaaaattcaagcgcgaatatttgt 462 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1482 tttctaatgtgcacgtgctaattaagtgtaaaaatacaaaattcaagcgcgaatatttgt 1541 Query: 463 tcaataaaaacctt 476 |||||||||||||| Sbjct: 1542 tcaataaaaacctt 1555 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,015 Number of Sequences: 18737 Number of extensions: 16015 Number of successful extensions: 947 Number of sequences better than 1.0e-100: 6 Number of HSP's better than 0.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 935 Number of HSP's gapped (non-prelim): 12 length of query: 476 length of database: 41,270,998 effective HSP length: 17 effective length of query: 459 effective length of database: 40,952,469 effective search space: 18797183271 effective search space used: 18797183271 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946337|AI946337 bs23g06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs23g06 5', mRNA sequence. (472 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31913-RA feature: mRNA loc=2L:5776246..5777108;ID=FBan0031913;... 910 0.0 >CG31913-RA feature: mRNA loc=2L:5776246..5777108;ID=FBan0031913;gene_id=FBgn00519 13;gene_sym=CG31913;sym=CG31913;scaffold=AE003611;len=86 3 Length = 863 Score = 910 bits (459), Expect = 0.0 Identities = 463/465 (99%) Strand = Plus / Plus Query: 8 gtgatttcttgccgactaagaggccgccatgccaaccttaaagttgcgtatcggtctgcc 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 62 gtgatttcttgccgactaagaggccgccatgccaaccttaaagttgcgtatcggtctgcc 121 Query: 68 ctcgaagcgaacgatgggcagcatatgcatctgcggagcactcgcctccatctcgggcct 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 122 ctcgaagcgaacgatgggcagcatatgcatctgcggagcactcgcctccatctcgggcct 181 Query: 128 ggcctacatgcgctggcgacttgaggaccgtgtacgccanacngagttctatcagttggc 187 ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct: 182 ggcctacatgcgctggcgacttgaggaccgtgtacgccagacggagttctatcagttggc 241 Query: 188 catccagcagctacgccagcacagtggagcggtcggtctgctgggcgagcccatcaagga 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 242 catccagcagctacgccagcacagtggagcggtcggtctgctgggcgagcccatcaagga 301 Query: 248 gtcgggctttaatctgtccaacgagaagaatcgctgtgacgaggacaaggcccagctgca 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 302 gtcgggctttaatctgtccaacgagaagaatcgctgtgacgaggacaaggcccagctgca 361 Query: 308 gttccatgtccagggtcccaaggacagggggaccgtctatttctgggcctcaaacaacca 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 362 gttccatgtccagggtcccaaggacagggggaccgtctatttctgggcctcaaacaacca 421 Query: 368 gaaacagggctggctgatcgatcgcctggagctcgaaacgagacagaacccgaacacacg 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 422 gaaacagggctggctgatcgatcgcctggagctcgaaacgagacagaacccgaacacacg 481 Query: 428 ctacctgcttaagaagcccccgaactactcgctggtcagcagtga 472 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 482 ctacctgcttaagaagcccccgaactactcgctggtcagcagtga 526 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,646 Number of Sequences: 18737 Number of extensions: 11646 Number of successful extensions: 291 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 290 Number of HSP's gapped (non-prelim): 1 length of query: 472 length of database: 41,270,998 effective HSP length: 17 effective length of query: 455 effective length of database: 40,952,469 effective search space: 18633373395 effective search space used: 18633373395 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946340|AI946340 bs23g10.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs23g10 5', mRNA sequence. (476 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG10741-RB feature: mRNA loc=3L:join(13444372..13444575,13445131... 662 0.0 >CG10741-RB feature: mRNA loc=3L:join(13444372..13444575,13445131..13445298, 13458468..13458782, 13458851..13459972);ID=FBan0010741;gene_id=FBgn0036373;g ene_sym=CG10741;sym=CG10741;scaffold=AE003537;len=1809 Length = 1809 Score = 662 bits (334), Expect = 0.0 Identities = 334/334 (100%) Strand = Plus / Plus Query: 143 gactttggccatcgatgttacatcgacgtatcttccagctctaacgcgaactgaactatt 202 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gactttggccatcgatgttacatcgacgtatcttccagctctaacgcgaactgaactatt 60 Query: 203 attgcaattataccaaaaatcatcgaacccccgcttttcccagcgcaaatcgtgaaaagt 262 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 attgcaattataccaaaaatcatcgaacccccgcttttcccagcgcaaatcgtgaaaagt 120 Query: 263 cggtgaaaattagcgaggataaatcgccgtacagctgaggagcaggattccagcgaggat 322 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 cggtgaaaattagcgaggataaatcgccgtacagctgaggagcaggattccagcgaggat 180 Query: 323 ttgaaggcgcacacctggcgaaagtgtgaaactcatgcggtgcagatcgagtcggtgcag 382 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 ttgaaggcgcacacctggcgaaagtgtgaaactcatgcggtgcagatcgagtcggtgcag 240 Query: 383 gagcagcgaaaccaagtccaagtccaactccaaatccacgtccaatcccacgtagaagcg 442 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 gagcagcgaaaccaagtccaagtccaactccaaatccacgtccaatcccacgtagaagcg 300 Query: 443 ttgagatcatcatggaaacggcgctggatgtact 476 |||||||||||||||||||||||||||||||||| Sbjct: 301 ttgagatcatcatggaaacggcgctggatgtact 334 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,791 Number of Sequences: 18737 Number of extensions: 11791 Number of successful extensions: 304 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 303 Number of HSP's gapped (non-prelim): 1 length of query: 476 length of database: 41,270,998 effective HSP length: 17 effective length of query: 459 effective length of database: 40,952,469 effective search space: 18797183271 effective search space used: 18797183271 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946358|AI946358 bs24c03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs24c03 5', mRNA sequence. (377 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31538-RA feature: mRNA loc=3R:complement(1101391..1103554);ID=... 724 0.0 >CG31538-RA feature: mRNA loc=3R:complement(1101391..1103554);ID=FBan0031538;gene_ id=FBgn0051538;gene_sym=CG31538;sym=CG31538;scaffold=AE0 03603;len=2164 Length = 2164 Score = 724 bits (365), Expect = 0.0 Identities = 368/369 (99%) Strand = Plus / Plus Query: 9 gttttatttcgtttcgtacagagctctccaaaatagaaaattcgaatttatttattcagt 68 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 70 gttttatttcgtttcgtacagagctctccaaaatagaaaattcgaatttatttattcagt 129 Query: 69 gttttgttggtcttacgagtccgtgaaatcgagttctttagtccgtgaagaaacgtgctt 128 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 130 gttttgttggtcttacgagtccgtgaaatcgagttctttagtccgtgaagaaacgtgctt 189 Query: 129 cgttttcgcaggtttttgctaaattgttcgtgtatccattggttcacattatgagtactc 188 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 190 cgttttcgcaggtttttgctaaattgttcgtgtatccattggttcacattatgagtactc 249 Query: 189 atcagtatagcctggggaggctggcccgccgaggcttcagcctgcggatgaatccgctgg 248 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 250 atcagtatagcctggggaggctggcccgccgaggcttcagcctgcggatgaatccgctgg 309 Query: 249 ccggcacactgcaaaggctttaccacacccgtagcaggccatgtgtggcccacagtgtga 308 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 310 ccggcacactgcaaaggctttaccacacccgtagcaggccatgtgtggcccagagtgtga 369 Query: 309 gccaggtgggtgaacggtccaagccaacgttgcagccctacgacttcgaccgaagccggg 368 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 370 gccaggtgggtgaacggtccaagccaacgttgcagccctacgacttcgaccgaagccggg 429 Query: 369 tgcgtaaaa 377 ||||||||| Sbjct: 430 tgcgtaaaa 438 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7723 Number of Sequences: 18737 Number of extensions: 7723 Number of successful extensions: 611 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 610 Number of HSP's gapped (non-prelim): 1 length of query: 377 length of database: 41,270,998 effective HSP length: 17 effective length of query: 360 effective length of database: 40,952,469 effective search space: 14742888840 effective search space used: 14742888840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946363|AI946363 bs24c12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs24c12 5', mRNA sequence. (548 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,966 Number of Sequences: 18737 Number of extensions: 12966 Number of successful extensions: 411 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 411 Number of HSP's gapped (non-prelim): 0 length of query: 548 length of database: 41,270,998 effective HSP length: 17 effective length of query: 531 effective length of database: 40,952,469 effective search space: 21745761039 effective search space used: 21745761039 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946376|AI946376 bs24e09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs24e09 5', mRNA sequence. (439 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9753 Number of Sequences: 18737 Number of extensions: 9753 Number of successful extensions: 728 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 728 Number of HSP's gapped (non-prelim): 0 length of query: 439 length of database: 41,270,998 effective HSP length: 17 effective length of query: 422 effective length of database: 40,952,469 effective search space: 17281941918 effective search space used: 17281941918 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946381|AI946381 bs24f08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs24f08 5', mRNA sequence. (496 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31287-RA feature: mRNA loc=3R:join(12029111..12029333,12029388... 817 0.0 >CG31287-RA feature: mRNA loc=3R:join(12029111..12029333,12029388..12029690, 12029748..12029998);ID=FBan0031287;gene_id=FBgn0051287;g ene_sym=CG31287;sym=CG31287;scaffold=AE003712;len=777 Length = 777 Score = 817 bits (412), Expect = 0.0 Identities = 428/436 (98%) Strand = Plus / Plus Query: 61 atgtgtgagccaaacttatcagatccgtcgacattcctgtacttggatatgctggcggat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 65 atgtgtgagccaaacttatcagatccgtcgacattcctgtacttggatatgctggcggat 124 Query: 121 attttaatgcaggacagccttgaaatggaatcagatttcaataccaagttaaaatttctt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 125 attttaatgcaggacagccttgaaatggaatcagatttcaataccaagttaaaatttctt 184 Query: 181 aaggaacaggaacaaatttgcctagacaatgccaaaaatgcacttcccatcgatgatacc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 185 aaggaacaggaacaaatttgcctagacaatgccaaaaatgcacttcccatcgatgatacc 244 Query: 241 ctgagatcagtaaagtgcaccatgcttagggtagaaatggagctgcatgaaaacgagatt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 245 ctgagatcagtaaagtgcaccatgcttagggtagaaatggagctgcatgaaaacgagatt 304 Query: 301 aaccttatacaggcggagaaagcagttacgaaattggagcagagctatccgagtcctgag 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 305 aaccttatacaggcggagaaagcagttacgaaattggagcagagctatccgagtcctgag 364 Query: 361 agtctggcaggccaagtgtttcctttggcaagtaccacatatcangatttgctgagtatg 420 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 365 agtctggcaggccaagtgtttcctttggcaagtaccacatatcaggatttgctgagtatg 424 Query: 421 ctgatgtcttcgnnnnnnncagtcgatcattgcaatcagatcaaagaggaggtcgcgacg 480 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 425 ctgatgtcttcgaaaaaaacagtcgatcattgcaatcagatcaaagaggaggtcgcgacg 484 Query: 481 tataatgagcagatat 496 |||||||||||||||| Sbjct: 485 tataatgagcagatat 500 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7817 Number of Sequences: 18737 Number of extensions: 7817 Number of successful extensions: 149 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 147 Number of HSP's gapped (non-prelim): 1 length of query: 496 length of database: 41,270,998 effective HSP length: 17 effective length of query: 479 effective length of database: 40,952,469 effective search space: 19616232651 effective search space used: 19616232651 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946390|AI946390 bs24h05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs24h05 5', mRNA sequence. (386 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8940 Number of Sequences: 18737 Number of extensions: 8940 Number of successful extensions: 756 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 756 Number of HSP's gapped (non-prelim): 0 length of query: 386 length of database: 41,270,998 effective HSP length: 17 effective length of query: 369 effective length of database: 40,952,469 effective search space: 15111461061 effective search space used: 15111461061 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946394|AI946394 bs25a03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs25a03 5', mRNA sequence. (326 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Pif2-RA feature: mRNA loc=3R:join(2374759..2374867,2374929..2375... 369 e-102 >Pif2-RA feature: mRNA loc=3R:join(2374759..2374867, 2374929..2375706);ID=FBan0031483;gene_id=FBgn0046873;gen e_sym=Pif2;sym=CG31483;scaffold=AE003674;len=887 Length = 887 Score = 369 bits (186), Expect = e-102 Identities = 186/186 (100%) Strand = Plus / Plus Query: 8 cacacacaaatcaaattcaagccccgggctcgagatctctgacgggttcaagcacgaatc 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 58 cacacacaaatcaaattcaagccccgggctcgagatctctgacgggttcaagcacgaatc 117 Query: 68 gaagatgtgcagcccctgctgtggatcctgctgcggaccttgctgctccccctgctgcag 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 118 gaagatgtgcagcccctgctgtggatcctgctgcggaccttgctgctccccctgctgcag 177 Query: 128 cccttgttgtccaccgtgctgcaatgactgctgcgggtcctgctgcagtccgtgttgcgg 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 178 cccttgttgtccaccgtgctgcaatgactgctgcgggtcctgctgcagtccgtgttgcgg 237 Query: 188 accctg 193 |||||| Sbjct: 238 accctg 243 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7344 Number of Sequences: 18737 Number of extensions: 7344 Number of successful extensions: 590 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 576 Number of HSP's gapped (non-prelim): 11 length of query: 326 length of database: 41,270,998 effective HSP length: 16 effective length of query: 310 effective length of database: 40,971,206 effective search space: 12701073860 effective search space used: 12701073860 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946395|AI946395 bs25a05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs25a05 5', mRNA sequence. (370 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6449 Number of Sequences: 18737 Number of extensions: 6449 Number of successful extensions: 401 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 401 Number of HSP's gapped (non-prelim): 0 length of query: 370 length of database: 41,270,998 effective HSP length: 17 effective length of query: 353 effective length of database: 40,952,469 effective search space: 14456221557 effective search space used: 14456221557 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946406|AI946406 bs25c07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs25c07 5', mRNA sequence. (379 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG30039-RA feature: mRNA loc=2R:complement(7115688..7116267,7116... 696 0.0 >CG30039-RA feature: mRNA loc=2R:complement(7115688..7116267, 7116320..7116468);ID=FBan0030039;gene_id=FBgn0050039;gen e_sym=CG30039;sym=CG30039;scaffold=AE003823;len=729 Length = 729 Score = 696 bits (351), Expect = 0.0 Identities = 365/372 (98%) Strand = Plus / Plus Query: 8 gataaatatcacaaaacaatgagccaagaaaattttccgcttccaagtgtagaaacacaa 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 111 gataaatatcacaaaacaatgagccaagaaaattttccgcttccaagtgtagaaacacaa 170 Query: 68 gccgcaactgatgaaggaggtcctccattaccgcaatcacctgaaaacgttgaggaaaat 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 171 gccgcaactgatgaaggaggtcctccattaccgcaatcacctgaaaacgttgaggaaaat 230 Query: 128 gtgaaagaaaccaaagaggttcaagagtcccagcgctgcagtagttcgaggattttaaat 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 231 gtgaaagaaaccaaagaggttcaagagtcccagcgctgcagtagttcgaggattttaaat 290 Query: 188 cgggaacataaatataagcagccagaatgcaaagcatcgagatcagtgnnnnnnnggaaa 247 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 291 cgggaacataaatataagcagccagaatgcaaagcatcgagatcagtgaaaaaaaggaaa 350 Query: 248 agggcaaggatccataaacggaaaagcactctttacggagatcgcgctgtgaactgtacc 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 351 agggcaaggatccataaacggaaaagcactctttacggagatcgcgctgtgaactgtacc 410 Query: 308 aagtgcggaactgtcacgatctattttccggcccgcaccaagtttttctcatgtgccgag 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 411 aagtgcggaactgtcacgatctattttccggcccgcaccaagtttttctcatgtgccgag 470 Query: 368 atagatggtcga 379 |||||||||||| Sbjct: 471 atagatggtcga 482 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7540 Number of Sequences: 18737 Number of extensions: 7540 Number of successful extensions: 523 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 521 Number of HSP's gapped (non-prelim): 1 length of query: 379 length of database: 41,270,998 effective HSP length: 17 effective length of query: 362 effective length of database: 40,952,469 effective search space: 14824793778 effective search space used: 14824793778 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946411|AI946411 bs25c12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs25c12 5', mRNA sequence. (379 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7248 Number of Sequences: 18737 Number of extensions: 7248 Number of successful extensions: 491 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 491 Number of HSP's gapped (non-prelim): 0 length of query: 379 length of database: 41,270,998 effective HSP length: 17 effective length of query: 362 effective length of database: 40,952,469 effective search space: 14824793778 effective search space used: 14824793778 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946416|AI946416 bs25d10.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs25d10 5', mRNA sequence. (385 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31294-RA feature: mRNA loc=3R:complement(11541236..11541574,11... 688 0.0 >CG31294-RA feature: mRNA loc=3R:complement(11541236..11541574,11541661..11541783, 11541845..11542084, 11542142..11542325);ID=FBan0031294;gene_id=FBgn0051294;g ene_sym=CG31294;sym=CG31294;scaffold=AE003710;len=886 Length = 886 Score = 688 bits (347), Expect = 0.0 Identities = 347/347 (100%) Strand = Plus / Plus Query: 39 cacaaaaatggatgctgatgaaagctttttgaatcaacggtctctactaatggatgttat 98 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 86 cacaaaaatggatgctgatgaaagctttttgaatcaacggtctctactaatggatgttat 145 Query: 99 gaagcagcttgaagatcttcagaatgccaataaaatggacactggcactaaaggtaagga 158 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 146 gaagcagcttgaagatcttcagaatgccaataaaatggacactggcactaaaggtaagga 205 Query: 159 ggagaaaaagccggaagtagacccttccgaaggtgttacaatcaccaactttatggtgtt 218 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 206 ggagaaaaagccggaagtagacccttccgaaggtgttacaatcaccaactttatggtgtt 265 Query: 219 tgcccgcgacgttcgcaagaaatcttcacgataccttaaaagggtccaaaagatgtcgaa 278 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 266 tgcccgcgacgttcgcaagaaatcttcacgataccttaaaagggtccaaaagatgtcgaa 325 Query: 279 tatcaatcaaatatcctttatgcggcaaattgacgtatcgccaaaagatcgtgccgaagc 338 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 326 tatcaatcaaatatcctttatgcggcaaattgacgtatcgccaaaagatcgtgccgaagc 385 Query: 339 tcgacgagatcgcgaaattgttgcagatagttttcggaggttgggta 385 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 386 tcgacgagatcgcgaaattgttgcagatagttttcggaggttgggta 432 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7213 Number of Sequences: 18737 Number of extensions: 7213 Number of successful extensions: 531 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 529 Number of HSP's gapped (non-prelim): 2 length of query: 385 length of database: 41,270,998 effective HSP length: 17 effective length of query: 368 effective length of database: 40,952,469 effective search space: 15070508592 effective search space used: 15070508592 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946422|AI946422 bs25e10.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs25e10 5', mRNA sequence. (380 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7446 Number of Sequences: 18737 Number of extensions: 7446 Number of successful extensions: 512 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 512 Number of HSP's gapped (non-prelim): 0 length of query: 380 length of database: 41,270,998 effective HSP length: 17 effective length of query: 363 effective length of database: 40,952,469 effective search space: 14865746247 effective search space used: 14865746247 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946423|AI946423 bs25e11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs25e11 5', mRNA sequence. (364 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG2093-RA feature: mRNA loc=2R:join(2628166..2628265,2629780..26... 553 e-157 >CG2093-RA feature: mRNA loc=2R:join(2628166..2628265,2629780..2629866, 2629933..2630130,2630201..2630554,2630611..2630832, 2631168..2631332,2631385..2632900,2632962..2633592, 2633648..2633803,2633865..2634207,2634274..2634419, 2634483..2634729,2634787..2635059,2635128..2635340, 2635400..2635509,2635576..2636175,2636299..2636826, 2636888..2637046,2637108..2637716,2637778..2637905, 2637963..2638805,2638879..2639251,2639327..2640148, 2640211..2640311,2640377..2640515,2640577..2640860, 2640932..2641070, 2641130..2641576);ID=FBan0002093;gene_id=FBgn0033194;gene _sym=CG2093;sym=CG2093;scaffold=AE003840;len=9933 Length = 9933 Score = 553 bits (279), Expect = e-157 Identities = 279/279 (100%) Strand = Plus / Minus Query: 8 attttattccctgtcgcctccatcaagcaatagggtctcaacacgaagtcgtagtgctgg 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9341 attttattccctgtcgcctccatcaagcaatagggtctcaacacgaagtcgtagtgctgg 9282 Query: 68 aaacgcggcggtcgcatacgcttcacatcctcgcttgcatccgccgcccgtttcacagcc 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9281 aaacgcggcggtcgcatacgcttcacatcctcgcttgcatccgccgcccgtttcacagcc 9222 Query: 128 tcgaagctgccactggcaaagtcaaccacgccagcggtggggcgagcaaccaggccaatt 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9221 tcgaagctgccactggcaaagtcaaccacgccagcggtggggcgagcaaccaggccaatt 9162 Query: 188 gcacccttacccaggcccttgaagaagccctcgaccccgttatcgcgagccccagtcact 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9161 gcacccttacccaggcccttgaagaagccctcgaccccgttatcgcgagccccagtcact 9102 Query: 248 ggtttggttacaacgccagtgacaccgtccacaaagccc 286 ||||||||||||||||||||||||||||||||||||||| Sbjct: 9101 ggtttggttacaacgccagtgacaccgtccacaaagccc 9063 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7072 Number of Sequences: 18737 Number of extensions: 7072 Number of successful extensions: 522 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 520 Number of HSP's gapped (non-prelim): 2 length of query: 364 length of database: 41,270,998 effective HSP length: 17 effective length of query: 347 effective length of database: 40,952,469 effective search space: 14210506743 effective search space used: 14210506743 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946427|AI946427 bs25f07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs25f07 5', mRNA sequence. (390 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31907-RA feature: mRNA loc=2L:complement(7051466..7053001);ID=... 743 0.0 >CG31907-RA feature: mRNA loc=2L:complement(7051466..7053001);ID=FBan0031907;gene_ id=FBgn0051907;gene_sym=CG31907;sym=CG31907;scaffold=AE0 03616;len=1536 Length = 1536 Score = 743 bits (375), Expect = 0.0 Identities = 381/383 (99%) Strand = Plus / Plus Query: 8 ccaagttaatataactggagtcaacagacttacataaagtacaatggcactttccgcaac 67 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 19 ccaagttaatataactggagtcaacagacttacataaagtaccatggcactttccgcaac 78 Query: 68 gaaggacactagtccatggaccaacatggtgaaaagggtaacagcgagcaaatacgatgt 127 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 79 gaaggacactagtccatggaccaacatggtgaagagggtaacagcgagcaaatacgatgt 138 Query: 128 agtctcggtcaagacgctgctgatgtttatcaacagcaaactggattgcgaattgcgagg 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 139 agtctcggtcaagacgctgctgatgtttatcaacagcaaactggattgcgaattgcgagg 198 Query: 188 ctttgaggatctgaaaacaggagcagtatattgccaactgatgcacagactctttcccaa 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 199 ctttgaggatctgaaaacaggagcagtatattgccaactgatgcacagactctttcccaa 258 Query: 248 ttcgatacaaattcataaggtcaagttttatacgaacgacatcagcgactttcagttaaa 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 259 ttcgatacaaattcataaggtcaagttttatacgaacgacatcagcgactttcagttaaa 318 Query: 308 tttccggttactaaacaattgctttcaaaaactaagagtaaccgtttatatgccagtgca 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 319 tttccggttactaaacaattgctttcaaaaactaagagtaaccgtttatatgccagtgca 378 Query: 368 tgagttaactctgggacacaatc 390 ||||||||||||||||||||||| Sbjct: 379 tgagttaactctgggacacaatc 401 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7712 Number of Sequences: 18737 Number of extensions: 7712 Number of successful extensions: 549 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 548 Number of HSP's gapped (non-prelim): 1 length of query: 390 length of database: 41,270,998 effective HSP length: 17 effective length of query: 373 effective length of database: 40,952,469 effective search space: 15275270937 effective search space used: 15275270937 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946438|AI946438 bs25g12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs25g12 5', mRNA sequence. (476 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,322 Number of Sequences: 18737 Number of extensions: 13322 Number of successful extensions: 342 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 342 Number of HSP's gapped (non-prelim): 0 length of query: 476 length of database: 41,270,998 effective HSP length: 17 effective length of query: 459 effective length of database: 40,952,469 effective search space: 18797183271 effective search space used: 18797183271 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946443|AI946443 bs25h11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs25h11 5', mRNA sequence. (512 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,714 Number of Sequences: 18737 Number of extensions: 10714 Number of successful extensions: 216 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 216 Number of HSP's gapped (non-prelim): 0 length of query: 512 length of database: 41,270,998 effective HSP length: 17 effective length of query: 495 effective length of database: 40,952,469 effective search space: 20271472155 effective search space used: 20271472155 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946450|AI946450 bs26b08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs26b08 5', mRNA sequence. (138 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 0 Number of Sequences: 18737 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 138 length of database: 41,270,998 effective HSP length: 16 effective length of query: 122 effective length of database: 40,971,206 effective search space: 4998487132 effective search space used: 4998487132 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946451|AI946451 bs26b09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs26b09 5', mRNA sequence. (443 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,231 Number of Sequences: 18737 Number of extensions: 10231 Number of successful extensions: 904 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 904 Number of HSP's gapped (non-prelim): 0 length of query: 443 length of database: 41,270,998 effective HSP length: 17 effective length of query: 426 effective length of database: 40,952,469 effective search space: 17445751794 effective search space used: 17445751794 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946457|AI946457 bs26c10.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs26c10 5', mRNA sequence. (536 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG9853-RA feature: mRNA loc=3R:complement(224279..225106,225167.... 1041 0.0 CG14647-RA feature: mRNA loc=3R:join(226211..226859,227075..2272... 504 e-142 >CG9853-RA feature: mRNA loc=3R:complement(224279..225106,225167..225401, 225463..225911, 227443..227702);ID=FBan0009853;gene_id=FBgn0037243;gene_ sym=CG9853;sym=CG9853;scaffold=AE003606;len=1772 Length = 1772 Score = 1041 bits (525), Expect = 0.0 Identities = 528/529 (99%) Strand = Plus / Plus Query: 8 aaacttttaagtatgtacagtcaataacagtaatattagtgataggtgccaaccaagata 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7 aaacttttaagtatgtacagtcaataacagtaatattagtgataggtgccaaccaagata 66 Query: 68 tcatcgtatggcctgtgacatgtgcaatggggtcaccattagggtaagctccgcgtcctt 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 67 tcatcgtatggcctgtgacatgtgcaatggggtcaccattagggtaagctccgcgtcctt 126 Query: 128 taaatttgccccacgcaaatttgcctcctgcaagtcgctgccagaaagattgcatttttc 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 127 taaatttgccccacgcaaatttgcctcctgcaagtcgctgccagaaagattgcatttttc 186 Query: 188 caagtcggcacctgctaacaccgcagctcgcaaattacagttcttcatattggcgttctt 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 187 caagtcggcacctgctaacaccgcagctcgcaaattacagttcttcatattggcgttctt 246 Query: 248 caaatttgccacacatgtgaaaataaaaatatttgtggacattggacattgcaagcagaa 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 247 caaatttgccacacatgtgaaaataaaaatatttgtggacattggacattgcaagcagaa 306 Query: 308 aactattaaaaccataaaaggtgttttacgaatgcattttaaattaccaattgattggtt 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 307 aactattaaaaccataaaaggtgttttacgaatgcattttaaattaccaattgattggtt 366 Query: 368 agaagtgtaaaccctcaatttttgttttgacattgggcgcctgtgcaaagagtgttatag 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 367 agaagtgtaaaccctcaatttttgttttgacattgggcgcctgtgcaaagagtgttatag 426 Query: 428 ttggcaatcgacaccgatagtttgtcatcgggaagctggtatatgtaaatacaaaataaa 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 427 ttggcaatcgacaccgatagtttgtcatcgggaagctggtatatgtaaatacaaaataaa 486 Query: 488 ttataaaaattggcttccacataattgagaaagtcgctgaaagcgtacg 536 ||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 487 ttataaaaattggcttccacataattgagaaggtcgctgaaagcgtacg 535 >CG14647-RA feature: mRNA loc=3R:join(226211..226859,227075..227206, 227322..227738);ID=FBan0014647;gene_id=FBgn0037244;gene_s ym=CG14647;sym=CG14647;scaffold=AE003606;len=1198 Length = 1198 Score = 504 bits (254), Expect = e-142 Identities = 254/254 (100%) Strand = Plus / Minus Query: 8 aaacttttaagtatgtacagtcaataacagtaatattagtgataggtgccaaccaagata 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1156 aaacttttaagtatgtacagtcaataacagtaatattagtgataggtgccaaccaagata 1097 Query: 68 tcatcgtatggcctgtgacatgtgcaatggggtcaccattagggtaagctccgcgtcctt 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1096 tcatcgtatggcctgtgacatgtgcaatggggtcaccattagggtaagctccgcgtcctt 1037 Query: 128 taaatttgccccacgcaaatttgcctcctgcaagtcgctgccagaaagattgcatttttc 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1036 taaatttgccccacgcaaatttgcctcctgcaagtcgctgccagaaagattgcatttttc 977 Query: 188 caagtcggcacctgctaacaccgcagctcgcaaattacagttcttcatattggcgttctt 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 976 caagtcggcacctgctaacaccgcagctcgcaaattacagttcttcatattggcgttctt 917 Query: 248 caaatttgccacac 261 |||||||||||||| Sbjct: 916 caaatttgccacac 903 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,090 Number of Sequences: 18737 Number of extensions: 13090 Number of successful extensions: 334 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 332 Number of HSP's gapped (non-prelim): 2 length of query: 536 length of database: 41,270,998 effective HSP length: 17 effective length of query: 519 effective length of database: 40,952,469 effective search space: 21254331411 effective search space used: 21254331411 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946464|AI946464 bs26d12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs26d12 5', mRNA sequence. (160 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 972 Number of Sequences: 18737 Number of extensions: 972 Number of successful extensions: 55 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55 Number of HSP's gapped (non-prelim): 0 length of query: 160 length of database: 41,270,998 effective HSP length: 16 effective length of query: 144 effective length of database: 40,971,206 effective search space: 5899853664 effective search space used: 5899853664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946477|AI946477 bs26g09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs26g09 5', mRNA sequence. (425 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,048 Number of Sequences: 18737 Number of extensions: 10048 Number of successful extensions: 783 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 783 Number of HSP's gapped (non-prelim): 0 length of query: 425 length of database: 41,270,998 effective HSP length: 17 effective length of query: 408 effective length of database: 40,952,469 effective search space: 16708607352 effective search space used: 16708607352 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946479|AI946479 bs26g11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs26g11 5', mRNA sequence. (413 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31538-RA feature: mRNA loc=3R:complement(1101391..1103554);ID=... 805 0.0 >CG31538-RA feature: mRNA loc=3R:complement(1101391..1103554);ID=FBan0031538;gene_i d=FBgn0051538;gene_sym=CG31538;sym=CG31538;scaffold=AE003 603;len=2164 Length = 2164 Score = 805 bits (406), Expect = 0.0 Identities = 406/406 (100%) Strand = Plus / Plus Query: 8 agccaatcccccgcttcatctcggcaccggacccaggtacgagatgtatacctccaatgc 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1025 agccaatcccccgcttcatctcggcaccggacccaggtacgagatgtatacctccaatgc 1084 Query: 68 taaggagatgttctcagagcatcgcagcgagctgcgtccgcagacaagttggcacaagcc 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1085 taaggagatgttctcagagcatcgcagcgagctgcgtccgcagacaagttggcacaagcc 1144 Query: 128 aaagccagccgccgaggacaagcccgaggatcagcttatggacgtgtcgatgatccgacc 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1145 aaagccagccgccgaggacaagcccgaggatcagcttatggacgtgtcgatgatccgacc 1204 Query: 188 agagcgtccggatattacagtggccaggggcctctggaagaacgaggaggacacacccga 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1205 agagcgtccggatattacagtggccaggggcctctggaagaacgaggaggacacacccga 1264 Query: 248 gccggattcgtggtacgagcagcccaaagcagagcgcgagttcttaaagcaggccttcct 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1265 gccggattcgtggtacgagcagcccaaagcagagcgcgagttcttaaagcaggccttcct 1324 Query: 308 cggcggagccaagagtcgccggaaggtgggacagtcccagttggacgaactctaccacga 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1325 cggcggagccaagagtcgccggaaggtgggacagtcccagttggacgaactctaccacga 1384 Query: 368 gtcgtcggacaatgcggcccagattagtgcctcacagcaggtgatt 413 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1385 gtcgtcggacaatgcggcccagattagtgcctcacagcaggtgatt 1430 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9127 Number of Sequences: 18737 Number of extensions: 9127 Number of successful extensions: 714 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 713 Number of HSP's gapped (non-prelim): 1 length of query: 413 length of database: 41,270,998 effective HSP length: 17 effective length of query: 396 effective length of database: 40,952,469 effective search space: 16217177724 effective search space used: 16217177724 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946488|AI946488 bs27a02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs27a02 5', mRNA sequence. (437 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7898 Number of Sequences: 18737 Number of extensions: 7898 Number of successful extensions: 486 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 486 Number of HSP's gapped (non-prelim): 0 length of query: 437 length of database: 41,270,998 effective HSP length: 17 effective length of query: 420 effective length of database: 40,952,469 effective search space: 17200036980 effective search space used: 17200036980 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946489|AI946489 bs27a03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs27a03 5', mRNA sequence. (419 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value 14-3-3zeta-RH feature: mRNA loc=2R:join(5160321..5160371,5164889... 783 0.0 14-3-3zeta-RG feature: mRNA loc=2R:join(5161665..5161810,5164889... 783 0.0 14-3-3zeta-RB feature: mRNA loc=2R:join(5160312..5160483,5164889... 783 0.0 14-3-3zeta-RA feature: mRNA loc=2R:join(5161665..5161730,5164889... 783 0.0 14-3-3zeta-RE feature: mRNA loc=2R:join(5160321..5160371,5164889... 648 0.0 14-3-3zeta-RD feature: mRNA loc=2R:join(5161665..5161730,5164889... 648 0.0 14-3-3zeta-RF feature: mRNA loc=2R:join(5160321..5160371,5164889... 601 e-171 14-3-3zeta-RC feature: mRNA loc=2R:join(5161665..5161730,5164889... 601 e-171 >14-3-3zeta-RH feature: mRNA loc=2R:join(5160321..5160371,5164889..5165042, 5165350..5165463,5165574..5165700,5166335..5166458, 5166922..5167085, 5168100..5170320);ID=FBan0017870;gene_id=FBgn0004907;gen e_sym=14-3-3zeta;sym=CG17870;scaffold=AE003831;len=2955 Length = 2955 Score = 783 bits (395), Expect = 0.0 Identities = 401/403 (99%) Strand = Plus / Minus Query: 17 ggtttttgtttgtttgtattactgaataatatttgcatagtcaaaaaggaaacatttgct 76 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 961 ggtttttgtttgtttgtattactgaataatatttgcatagtcaaaaaggaaacatttgct 902 Query: 77 tagttgtttggttagttgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcg 136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 901 tagttgtttggttagttgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcg 842 Query: 137 gacgtccagagagtcaggttgtccctcaacagctgcatgatgagtgtcgagtccttgtag 196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 841 gacgtccagagagtcaggttgtccctcaacagctgcatgatgagtgtcgagtccttgtag 782 Query: 197 gagtcctcgttcagtgtgtccagctcggctatcgcatcatcgaacgcctgtttagccaat 256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 781 gagtcctcgttcagtgtgtccagctcggctatcgcatcatcgaacgcctgtttagccaat 722 Query: 257 tggcaagctttgtctggtgagttcaaaatctcatagtagaagactgagaagttaagggcc 316 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 721 tggcaagctttgtctggtgagttcaaaatctcatagtagaagactgagaagttaagggcc 662 Query: 317 agacccaaacggatgggatgcgtgggctgcattttggtttttgcaatatcgaacgcctcc 376 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct: 661 agacccaaacggatgggatgtgttggctgcattttggtttttgcaatatcgaacgcctcc 602 Query: 377 tgataggcatttttcgagtcatcaacgacggtgttgcgtgcat 419 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 601 tgataggcatttttcgagtcatcaacgacggtgttgcgtgcat 559 >14-3-3zeta-RG feature: mRNA loc=2R:join(5161665..5161810,5164889..5165042, 5165350..5165463,5165574..5165700,5166335..5166458, 5166922..5167085, 5168100..5170320);ID=FBan0017870;gene_id=FBgn0004907;gene _sym=14-3-3zeta;sym=CG17870;scaffold=AE003831;len=3050 Length = 3050 Score = 783 bits (395), Expect = 0.0 Identities = 401/403 (99%) Strand = Plus / Minus Query: 17 ggtttttgtttgtttgtattactgaataatatttgcatagtcaaaaaggaaacatttgct 76 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1056 ggtttttgtttgtttgtattactgaataatatttgcatagtcaaaaaggaaacatttgct 997 Query: 77 tagttgtttggttagttgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcg 136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 996 tagttgtttggttagttgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcg 937 Query: 137 gacgtccagagagtcaggttgtccctcaacagctgcatgatgagtgtcgagtccttgtag 196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 936 gacgtccagagagtcaggttgtccctcaacagctgcatgatgagtgtcgagtccttgtag 877 Query: 197 gagtcctcgttcagtgtgtccagctcggctatcgcatcatcgaacgcctgtttagccaat 256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 876 gagtcctcgttcagtgtgtccagctcggctatcgcatcatcgaacgcctgtttagccaat 817 Query: 257 tggcaagctttgtctggtgagttcaaaatctcatagtagaagactgagaagttaagggcc 316 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 816 tggcaagctttgtctggtgagttcaaaatctcatagtagaagactgagaagttaagggcc 757 Query: 317 agacccaaacggatgggatgcgtgggctgcattttggtttttgcaatatcgaacgcctcc 376 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct: 756 agacccaaacggatgggatgtgttggctgcattttggtttttgcaatatcgaacgcctcc 697 Query: 377 tgataggcatttttcgagtcatcaacgacggtgttgcgtgcat 419 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 696 tgataggcatttttcgagtcatcaacgacggtgttgcgtgcat 654 >14-3-3zeta-RB feature: mRNA loc=2R:join(5160312..5160483,5164889..5165042, 5165350..5165463,5165574..5165700,5166335..5166458, 5166922..5167085, 5168100..5170320);ID=FBan0017870;gene_id=FBgn0004907;gene _sym=14-3-3zeta;sym=CG17870;scaffold=AE003831;len=3076 Length = 3076 Score = 783 bits (395), Expect = 0.0 Identities = 401/403 (99%) Strand = Plus / Minus Query: 17 ggtttttgtttgtttgtattactgaataatatttgcatagtcaaaaaggaaacatttgct 76 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1082 ggtttttgtttgtttgtattactgaataatatttgcatagtcaaaaaggaaacatttgct 1023 Query: 77 tagttgtttggttagttgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcg 136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1022 tagttgtttggttagttgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcg 963 Query: 137 gacgtccagagagtcaggttgtccctcaacagctgcatgatgagtgtcgagtccttgtag 196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 962 gacgtccagagagtcaggttgtccctcaacagctgcatgatgagtgtcgagtccttgtag 903 Query: 197 gagtcctcgttcagtgtgtccagctcggctatcgcatcatcgaacgcctgtttagccaat 256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 902 gagtcctcgttcagtgtgtccagctcggctatcgcatcatcgaacgcctgtttagccaat 843 Query: 257 tggcaagctttgtctggtgagttcaaaatctcatagtagaagactgagaagttaagggcc 316 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 842 tggcaagctttgtctggtgagttcaaaatctcatagtagaagactgagaagttaagggcc 783 Query: 317 agacccaaacggatgggatgcgtgggctgcattttggtttttgcaatatcgaacgcctcc 376 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct: 782 agacccaaacggatgggatgtgttggctgcattttggtttttgcaatatcgaacgcctcc 723 Query: 377 tgataggcatttttcgagtcatcaacgacggtgttgcgtgcat 419 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 722 tgataggcatttttcgagtcatcaacgacggtgttgcgtgcat 680 >14-3-3zeta-RA feature: mRNA loc=2R:join(5161665..5161730,5164889..5165042, 5165350..5165463,5165574..5165700,5166335..5166458, 5166922..5167085, 5168100..5169107);ID=FBan0017870;gene_id=FBgn0004907;gen e_sym=14-3-3zeta;sym=CG17870;scaffold=AE003831;len=1757 Length = 1757 Score = 783 bits (395), Expect = 0.0 Identities = 401/403 (99%) Strand = Plus / Minus Query: 17 ggtttttgtttgtttgtattactgaataatatttgcatagtcaaaaaggaaacatttgct 76 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 976 ggtttttgtttgtttgtattactgaataatatttgcatagtcaaaaaggaaacatttgct 917 Query: 77 tagttgtttggttagttgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcg 136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 916 tagttgtttggttagttgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcg 857 Query: 137 gacgtccagagagtcaggttgtccctcaacagctgcatgatgagtgtcgagtccttgtag 196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 856 gacgtccagagagtcaggttgtccctcaacagctgcatgatgagtgtcgagtccttgtag 797 Query: 197 gagtcctcgttcagtgtgtccagctcggctatcgcatcatcgaacgcctgtttagccaat 256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 796 gagtcctcgttcagtgtgtccagctcggctatcgcatcatcgaacgcctgtttagccaat 737 Query: 257 tggcaagctttgtctggtgagttcaaaatctcatagtagaagactgagaagttaagggcc 316 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 736 tggcaagctttgtctggtgagttcaaaatctcatagtagaagactgagaagttaagggcc 677 Query: 317 agacccaaacggatgggatgcgtgggctgcattttggtttttgcaatatcgaacgcctcc 376 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct: 676 agacccaaacggatgggatgtgttggctgcattttggtttttgcaatatcgaacgcctcc 617 Query: 377 tgataggcatttttcgagtcatcaacgacggtgttgcgtgcat 419 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 616 tgataggcatttttcgagtcatcaacgacggtgttgcgtgcat 574 >14-3-3zeta-RE feature: mRNA loc=2R:join(5160321..5160371,5164889..5165042, 5165350..5165463,5165574..5165700,5166335..5166458, 5166574..5166737, 5168100..5170320);ID=FBan0017870;gene_id=FBgn0004907;gen e_sym=14-3-3zeta;sym=CG17870;scaffold=AE003831;len=2955 Length = 2955 Score = 648 bits (327), Expect = 0.0 Identities = 333/335 (99%) Strand = Plus / Minus Query: 17 ggtttttgtttgtttgtattactgaataatatttgcatagtcaaaaaggaaacatttgct 76 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 961 ggtttttgtttgtttgtattactgaataatatttgcatagtcaaaaaggaaacatttgct 902 Query: 77 tagttgtttggttagttgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcg 136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 901 tagttgtttggttagttgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcg 842 Query: 137 gacgtccagagagtcaggttgtccctcaacagctgcatgatgagtgtcgagtccttgtag 196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 841 gacgtccagagagtcaggttgtccctcaacagctgcatgatgagtgtcgagtccttgtag 782 Query: 197 gagtcctcgttcagtgtgtccagctcggctatcgcatcatcgaacgcctgtttagccaat 256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 781 gagtcctcgttcagtgtgtccagctcggctatcgcatcatcgaacgcctgtttagccaat 722 Query: 257 tggcaagctttgtctggtgagttcaaaatctcatagtagaagactgagaagttaagggcc 316 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 721 tggcaagctttgtctggtgagttcaaaatctcatagtagaagactgagaagttaagggcc 662 Query: 317 agacccaaacggatgggatgcgtgggctgcatttt 351 |||||||||||||||||||| || ||||||||||| Sbjct: 661 agacccaaacggatgggatgtgttggctgcatttt 627 >14-3-3zeta-RD feature: mRNA loc=2R:join(5161665..5161730,5164889..5165042, 5165350..5165463,5165574..5165700,5166335..5166458, 5166574..5166737, 5168100..5170320);ID=FBan0017870;gene_id=FBgn0004907;gen e_sym=14-3-3zeta;sym=CG17870;scaffold=AE003831;len=2970 Length = 2970 Score = 648 bits (327), Expect = 0.0 Identities = 333/335 (99%) Strand = Plus / Minus Query: 17 ggtttttgtttgtttgtattactgaataatatttgcatagtcaaaaaggaaacatttgct 76 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 976 ggtttttgtttgtttgtattactgaataatatttgcatagtcaaaaaggaaacatttgct 917 Query: 77 tagttgtttggttagttgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcg 136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 916 tagttgtttggttagttgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcg 857 Query: 137 gacgtccagagagtcaggttgtccctcaacagctgcatgatgagtgtcgagtccttgtag 196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 856 gacgtccagagagtcaggttgtccctcaacagctgcatgatgagtgtcgagtccttgtag 797 Query: 197 gagtcctcgttcagtgtgtccagctcggctatcgcatcatcgaacgcctgtttagccaat 256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 796 gagtcctcgttcagtgtgtccagctcggctatcgcatcatcgaacgcctgtttagccaat 737 Query: 257 tggcaagctttgtctggtgagttcaaaatctcatagtagaagactgagaagttaagggcc 316 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 736 tggcaagctttgtctggtgagttcaaaatctcatagtagaagactgagaagttaagggcc 677 Query: 317 agacccaaacggatgggatgcgtgggctgcatttt 351 |||||||||||||||||||| || ||||||||||| Sbjct: 676 agacccaaacggatgggatgtgttggctgcatttt 642 >14-3-3zeta-RF feature: mRNA loc=2R:join(5160321..5160371,5164889..5165042, 5165350..5165463,5165574..5165700,5166335..5166458, 5167267..5167430, 5168100..5169107);ID=FBan0017870;gene_id=FBgn0004907;gen e_sym=14-3-3zeta;sym=CG17870;scaffold=AE003831;len=1742 Length = 1742 Score = 601 bits (303), Expect = e-171 Identities = 378/403 (93%) Strand = Plus / Minus Query: 17 ggtttttgtttgtttgtattactgaataatatttgcatagtcaaaaaggaaacatttgct 76 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 961 ggtttttgtttgtttgtattactgaataatatttgcatagtcaaaaaggaaacatttgct 902 Query: 77 tagttgtttggttagttgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcg 136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 901 tagttgtttggttagttgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcg 842 Query: 137 gacgtccagagagtcaggttgtccctcaacagctgcatgatgagtgtcgagtccttgtag 196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 841 gacgtccagagagtcaggttgtccctcaacagctgcatgatgagtgtcgagtccttgtag 782 Query: 197 gagtcctcgttcagtgtgtccagctcggctatcgcatcatcgaacgcctgtttagccaat 256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 781 gagtcctcgttcagtgtgtccagctcggctatcgcatcatcgaacgcctgtttagctaag 722 Query: 257 tggcaagctttgtctggtgagttcaaaatctcatagtagaagactgagaagttaagggcc 316 || ||||| | ||||||| || | ||| || || |||||||| || ||||| || || Sbjct: 721 tgacaagccctcgctggtgaattgataatttcgtaatagaagacggaaaagttgagagca 662 Query: 317 agacccaaacggatgggatgcgtgggctgcattttggtttttgcaatatcgaacgcctcc 376 ||||| || | ||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 661 agacctaatctgattggatgtgtgggctgcattttggtttttgcaatatcgaacgcctcc 602 Query: 377 tgataggcatttttcgagtcatcaacgacggtgttgcgtgcat 419 |||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 601 tgataggcttttttcgagtcctcaacgacggtgttgcgtgcat 559 >14-3-3zeta-RC feature: mRNA loc=2R:join(5161665..5161730,5164889..5165042, 5165350..5165463,5165574..5165700,5166335..5166458, 5167267..5167430, 5168100..5170320);ID=FBan0017870;gene_id=FBgn0004907;gen e_sym=14-3-3zeta;sym=CG17870;scaffold=AE003831;len=2970 Length = 2970 Score = 601 bits (303), Expect = e-171 Identities = 378/403 (93%) Strand = Plus / Minus Query: 17 ggtttttgtttgtttgtattactgaataatatttgcatagtcaaaaaggaaacatttgct 76 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 976 ggtttttgtttgtttgtattactgaataatatttgcatagtcaaaaaggaaacatttgct 917 Query: 77 tagttgtttggttagttgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcg 136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 916 tagttgtttggttagttgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcg 857 Query: 137 gacgtccagagagtcaggttgtccctcaacagctgcatgatgagtgtcgagtccttgtag 196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 856 gacgtccagagagtcaggttgtccctcaacagctgcatgatgagtgtcgagtccttgtag 797 Query: 197 gagtcctcgttcagtgtgtccagctcggctatcgcatcatcgaacgcctgtttagccaat 256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 796 gagtcctcgttcagtgtgtccagctcggctatcgcatcatcgaacgcctgtttagctaag 737 Query: 257 tggcaagctttgtctggtgagttcaaaatctcatagtagaagactgagaagttaagggcc 316 || ||||| | ||||||| || | ||| || || |||||||| || ||||| || || Sbjct: 736 tgacaagccctcgctggtgaattgataatttcgtaatagaagacggaaaagttgagagca 677 Query: 317 agacccaaacggatgggatgcgtgggctgcattttggtttttgcaatatcgaacgcctcc 376 ||||| || | ||| ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 676 agacctaatctgattggatgtgtgggctgcattttggtttttgcaatatcgaacgcctcc 617 Query: 377 tgataggcatttttcgagtcatcaacgacggtgttgcgtgcat 419 |||||||| ||||||||||| |||||||||||||||||||||| Sbjct: 616 tgataggcttttttcgagtcctcaacgacggtgttgcgtgcat 574 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,353 Number of Sequences: 18737 Number of extensions: 10353 Number of successful extensions: 1069 Number of sequences better than 1.0e-100: 8 Number of HSP's better than 0.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1057 Number of HSP's gapped (non-prelim): 10 length of query: 419 length of database: 41,270,998 effective HSP length: 17 effective length of query: 402 effective length of database: 40,952,469 effective search space: 16462892538 effective search space used: 16462892538 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946514|AI946514 bs27c07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs27c07 5', mRNA sequence. (451 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7822 Number of Sequences: 18737 Number of extensions: 7822 Number of successful extensions: 540 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 540 Number of HSP's gapped (non-prelim): 0 length of query: 451 length of database: 41,270,998 effective HSP length: 17 effective length of query: 434 effective length of database: 40,952,469 effective search space: 17773371546 effective search space used: 17773371546 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946515|AI946515 bs27c08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs27c08 5', mRNA sequence. (432 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,746 Number of Sequences: 18737 Number of extensions: 12746 Number of successful extensions: 1452 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1452 Number of HSP's gapped (non-prelim): 0 length of query: 432 length of database: 41,270,998 effective HSP length: 17 effective length of query: 415 effective length of database: 40,952,469 effective search space: 16995274635 effective search space used: 16995274635 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946528|AI946528 bs27d11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs27d11 5', mRNA sequence. (299 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4298 Number of Sequences: 18737 Number of extensions: 4298 Number of successful extensions: 337 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 337 Number of HSP's gapped (non-prelim): 0 length of query: 299 length of database: 41,270,998 effective HSP length: 16 effective length of query: 283 effective length of database: 40,971,206 effective search space: 11594851298 effective search space used: 11594851298 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946531|AI946531 bs27e02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs27e02 5', mRNA sequence. (414 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG13334-RA feature: mRNA loc=2R:8623259..8624819;ID=FBan0013334;... 642 0.0 >CG13334-RA feature: mRNA loc=2R:8623259..8624819;ID=FBan0013334;gene_id=FBgn003385 6;gene_sym=CG13334;sym=CG13334;scaffold=AE003818;len=1561 Length = 1561 Score = 642 bits (324), Expect = 0.0 Identities = 324/324 (100%) Strand = Plus / Plus Query: 3 atccatgaattctttagtagctgagctactgaagaattctatggatgaacttatactaat 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1150 atccatgaattctttagtagctgagctactgaagaattctatggatgaacttatactaat 1209 Query: 63 ggtttatttgttgttccgaaatatttatatcgcaaacgaataccttttggaaatgtacat 122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1210 ggtttatttgttgttccgaaatatttatatcgcaaacgaataccttttggaaatgtacat 1269 Query: 123 attctggaaaatgtatatggtatgtacatatacagataagaaaaaagaacttatgcctcc 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1270 attctggaaaatgtatatggtatgtacatatacagataagaaaaaagaacttatgcctcc 1329 Query: 183 attcaatgcattgttcatggaaatagcccataaaaaacacacccaaatctcaagtggaaa 242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1330 attcaatgcattgttcatggaaatagcccataaaaaacacacccaaatctcaagtggaaa 1389 Query: 243 atgaaaacccggagaagaccagctgtgggagtgagtaggcaagccctttgccctttccca 302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1390 atgaaaacccggagaagaccagctgtgggagtgagtaggcaagccctttgccctttccca 1449 Query: 303 ctttcagctagagcaagtgagatg 326 |||||||||||||||||||||||| Sbjct: 1450 ctttcagctagagcaagtgagatg 1473 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9023 Number of Sequences: 18737 Number of extensions: 9023 Number of successful extensions: 671 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 669 Number of HSP's gapped (non-prelim): 2 length of query: 414 length of database: 41,270,998 effective HSP length: 17 effective length of query: 397 effective length of database: 40,952,469 effective search space: 16258130193 effective search space used: 16258130193 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946532|AI946532 bs27e03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs27e03 5', mRNA sequence. (448 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9155 Number of Sequences: 18737 Number of extensions: 9155 Number of successful extensions: 735 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 735 Number of HSP's gapped (non-prelim): 0 length of query: 448 length of database: 41,270,998 effective HSP length: 17 effective length of query: 431 effective length of database: 40,952,469 effective search space: 17650514139 effective search space used: 17650514139 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946539|AI946539 bs27e11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs27e11 5', mRNA sequence. (441 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32259-RB feature: mRNA loc=3L:join(4049979..4050090,4050163..4... 805 0.0 >CG32259-RB feature: mRNA loc=3L:join(4049979..4050090,4050163..4050269, 4050332..4050789,4051035..4051141, 4051449..4051522);ID=FBan0032259;gene_id=FBgn0052259;gen e_sym=CG32259;sym=CG32259;scaffold=AE003480;len=858 Length = 858 Score = 805 bits (406), Expect = 0.0 Identities = 406/406 (100%) Strand = Plus / Plus Query: 36 gcctgaaacagctgaccaacagctaatagaattattcagcaatttttgcagagaacgatt 95 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9 gcctgaaacagctgaccaacagctaatagaattattcagcaatttttgcagagaacgatt 68 Query: 96 cgattcgattttgtgggattgctaattttattatccagcacgcttggagaacttgtgttc 155 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 69 cgattcgattttgtgggattgctaattttattatccagcacgcttggagaacttgtgttc 128 Query: 156 gtttacttcattttctggattgcagtgaattttattggcttcgtcattgtgcttaactat 215 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 129 gtttacttcattttctggattgcagtgaattttattggcttcgtcattgtgcttaactat 188 Query: 216 tttgcaactcttcagaaagatgaataagatgaacccaaatcgtagcaataaggattcgga 275 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 189 tttgcaactcttcagaaagatgaataagatgaacccaaatcgtagcaataaggattcgga 248 Query: 276 caccactgaggattccaacgcgaagaagagtttgcaaatggattccgattcatcagacgt 335 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 249 caccactgaggattccaacgcgaagaagagtttgcaaatggattccgattcatcagacgt 308 Query: 336 gtcgaaagattactgtgatggttcagatgagaacgaggagtccgacccatcatcaggttc 395 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 309 gtcgaaagattactgtgatggttcagatgagaacgaggagtccgacccatcatcaggttc 368 Query: 396 ctcacaggattcgataactgaaaaattagcgaaagccatattagag 441 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 369 ctcacaggattcgataactgaaaaattagcgaaagccatattagag 414 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9021 Number of Sequences: 18737 Number of extensions: 9021 Number of successful extensions: 681 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 680 Number of HSP's gapped (non-prelim): 1 length of query: 441 length of database: 41,270,998 effective HSP length: 17 effective length of query: 424 effective length of database: 40,952,469 effective search space: 17363846856 effective search space used: 17363846856 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946543|AI946543 bs27f03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs27f03 5', mRNA sequence. (432 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31320-RA feature: mRNA loc=3R:complement(10184097..10187480);I... 819 0.0 >CG31320-RA feature: mRNA loc=3R:complement(10184097..10187480);ID=FBan0031320;gene _id=FBgn0051320;gene_sym=CG31320;sym=CG31320;scaffold=AE0 03704;len=3384 Length = 3384 Score = 819 bits (413), Expect = 0.0 Identities = 422/425 (99%) Strand = Plus / Plus Query: 8 gacgaatctccggaggttctgaaccacatatatccgcaatggctcaagtgtggcatacaa 67 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 1425 gacgaatctccggaggttctgaaccacatatacccgcaatggctcaagtgtggcatacaa 1484 Query: 68 tatttcaatgaaaacgaagccgagttgtcacaacaggaaataagcgatttgcccgttgag 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1485 tatttcaatgaaaacgaagccgagttgtcacaacaggaaataagcgatttgcccgttgag 1544 Query: 128 aattacccgaaagatgtcaagcgacctacgataggatgtcgtggtttggtgcaacgatct 187 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 1545 aattacccgaaagatgtcaagcgacctacgataggatgtcgtggattggtgcaacgatct 1604 Query: 188 ttgcgactcttgcaacttattacccgggaaacaagcgactggaaggataatgtacgcctc 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1605 ttgcgactcttgcaacttattacccgggaaacaagcgactggaaggataatgtacgcctc 1664 Query: 248 cacgccctgaagctactctatcaatttgttttgcacgccgaggctgccatgactgccaag 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1665 cacgccctgaagctactctatcaatttgttttgcacgccgaggctgccatgactgccaag 1724 Query: 308 ttctttgagatctacggggatttggcccatgcctgtatcgatcatgtggcagaagtcaat 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1725 ttctttgagatctacggggatttggcccatgcctgtatcgatcatgtggcagaagtcaat 1784 Query: 368 gcggaagccgccaaggtggcggatttgatgggtcgtctgttgtcctatgatgcctggata 427 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 1785 gcggaagccgccaaggtggcggatttgatgggtcgtctgttgtcctacgatgcctggata 1844 Query: 428 gatca 432 ||||| Sbjct: 1845 gatca 1849 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8007 Number of Sequences: 18737 Number of extensions: 8007 Number of successful extensions: 594 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 593 Number of HSP's gapped (non-prelim): 1 length of query: 432 length of database: 41,270,998 effective HSP length: 17 effective length of query: 415 effective length of database: 40,952,469 effective search space: 16995274635 effective search space used: 16995274635 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946549|AI946549 bs27f10.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs27f10 5', mRNA sequence. (443 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,127 Number of Sequences: 18737 Number of extensions: 10127 Number of successful extensions: 817 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 817 Number of HSP's gapped (non-prelim): 0 length of query: 443 length of database: 41,270,998 effective HSP length: 17 effective length of query: 426 effective length of database: 40,952,469 effective search space: 17445751794 effective search space used: 17445751794 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946551|AI946551 bs27f12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs27f12 5', mRNA sequence. (431 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32690-RA feature: mRNA loc=X:join(9944346..9944399,9944465..99... 841 0.0 >CG32690-RA feature: mRNA loc=X:join(9944346..9944399, 9944465..9945075);ID=FBan0032690;gene_id=FBgn0052690;gen e_sym=CG32690;sym=CG32690;scaffold=AE003449;len=665 Length = 665 Score = 841 bits (424), Expect = 0.0 Identities = 424/424 (100%) Strand = Plus / Plus Query: 8 cgaacaagttacagaaatgtatcaaaattttttcagttaaaaaactacattgccgacgaa 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11 cgaacaagttacagaaatgtatcaaaattttttcagttaaaaaactacattgccgacgaa 70 Query: 68 atgtcggcacaaggcttggttcctcgcccgaatccgaggaatccaaaccaggaaacaacg 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 71 atgtcggcacaaggcttggttcctcgcccgaatccgaggaatccaaaccaggaaacaacg 130 Query: 128 ttgataatgatcgacaaaattactcactactcatgaacacgatgctccataactgccgga 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 131 ttgataatgatcgacaaaattactcactactcatgaacacgatgctccataactgccgga 190 Query: 188 cgagcaccaatcggcgacccagttccggaggatcatcaagctgcaaaacccatgacacta 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 191 cgagcaccaatcggcgacccagttccggaggatcatcaagctgcaaaacccatgacacta 250 Query: 248 gactgtaaaagtacacattgttacagcagcagtgcacaaggcttgattcctcgcccgaat 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 251 gactgtaaaagtacacattgttacagcagcagtgcacaaggcttgattcctcgcccgaat 310 Query: 308 ccgaggaatctaagccaggaaacgacgtttgatcatgattcgccacgtgtgggactagat 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 311 ccgaggaatctaagccaggaaacgacgtttgatcatgattcgccacgtgtgggactagat 370 Query: 368 ttttcactacctatgaacacgatgctttctttatacgacactggatggtaacacgatggt 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 371 ttttcactacctatgaacacgatgctttctttatacgacactggatggtaacacgatggt 430 Query: 428 aaca 431 |||| Sbjct: 431 aaca 434 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7641 Number of Sequences: 18737 Number of extensions: 7641 Number of successful extensions: 509 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 503 Number of HSP's gapped (non-prelim): 2 length of query: 431 length of database: 41,270,998 effective HSP length: 17 effective length of query: 414 effective length of database: 40,952,469 effective search space: 16954322166 effective search space used: 16954322166 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946552|AI946552 bs27g01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs27g01 5', mRNA sequence. (415 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9847 Number of Sequences: 18737 Number of extensions: 9847 Number of successful extensions: 726 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 726 Number of HSP's gapped (non-prelim): 0 length of query: 415 length of database: 41,270,998 effective HSP length: 17 effective length of query: 398 effective length of database: 40,952,469 effective search space: 16299082662 effective search space used: 16299082662 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946553|AI946553 bs27g02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs27g02 5', mRNA sequence. (424 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9481 Number of Sequences: 18737 Number of extensions: 9481 Number of successful extensions: 788 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 788 Number of HSP's gapped (non-prelim): 0 length of query: 424 length of database: 41,270,998 effective HSP length: 17 effective length of query: 407 effective length of database: 40,952,469 effective search space: 16667654883 effective search space used: 16667654883 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946554|AI946554 bs27g03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs27g03 5', mRNA sequence. (345 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG30430-RA feature: mRNA loc=2R:join(20173002..20173106,20173163... 615 e-175 >CG30430-RA feature: mRNA loc=2R:join(20173002..20173106, 20173163..20173482);ID=FBan0030430;gene_id=FBgn0050430;g ene_sym=CG30430;sym=CG30430;scaffold=AE003466;len=425 Length = 425 Score = 615 bits (310), Expect = e-175 Identities = 313/314 (99%) Strand = Plus / Plus Query: 17 gttaattgtcaaagtttttggagatttgttttttaaaactcacataaattcgtgatgtgt 76 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 70 gttaattgtcaaagtttttggagatttgttttttaaaactcacataaattcgtgatgtgt 129 Query: 77 tgcgggccctgctgcggaacttgctactacccttgctgtagcccctgctttagtggccgt 136 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 130 tgcgggccctgctgtggaacttgctactacccttgctgtagcccctgctttagtggccgt 189 Query: 137 tgttttggaccacgatgcggattctatagtggaccatgtggaccttgctgcgggggcgga 196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 190 tgttttggaccacgatgcggattctatagtggaccatgtggaccttgctgcgggggcgga 249 Query: 197 tgctgcagcagctgcggaccgtcttgttaattttggtactcggtaaccaaaactttttga 256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 250 tgctgcagcagctgcggaccgtcttgttaattttggtactcggtaaccaaaactttttga 309 Query: 257 agacaattatttattaacatggcctattcgtcttgaaaacaagatcaagtcgtaataaag 316 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 310 agacaattatttattaacatggcctattcgtcttgaaaacaagatcaagtcgtaataaag 369 Query: 317 gtgtttgactttcc 330 |||||||||||||| Sbjct: 370 gtgtttgactttcc 383 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9676 Number of Sequences: 18737 Number of extensions: 9676 Number of successful extensions: 946 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 945 Number of HSP's gapped (non-prelim): 1 length of query: 345 length of database: 41,270,998 effective HSP length: 16 effective length of query: 329 effective length of database: 40,971,206 effective search space: 13479526774 effective search space used: 13479526774 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946555|AI946555 bs27g04.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs27g04 5', mRNA sequence. (427 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value BEST:GH11908-RB feature: mRNA loc=2R:join(16846975..16847117,168... 490 e-138 BEST:GH11908-RA feature: mRNA loc=2R:join(16846975..16847117,168... 490 e-138 >BEST:GH11908-RB feature: mRNA loc=2R:join(16846975..16847117, 16847166..16847892);ID=FBan0009284;gene_id=FBgn0046297;g ene_sym=BEST:GH11908;sym=CG9284;scaffold=AE003455;len=87 0 Length = 870 Score = 490 bits (247), Expect = e-138 Identities = 311/331 (93%), Gaps = 1/331 (0%) Strand = Plus / Minus Query: 30 gacgcttattaaagtctttaattaatcaacgtagattgacgttttaaataatctattcat 89 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 867 gacgcttattaaagtctttaattaatcaacgtagattgacgttttaaataatctattcat 808 Query: 90 tcttgagtttgggaacagccgtcctaataacagtcaaatatggggtatccaagttaatcc 149 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 807 tcttgagtttgggaacagccgtcctaataacagtcaaatatggggtatccaagttaatcc 748 Query: 150 tagaaacctatcctatatatttcgaatcctagtcaatcgttatccatatttggggtatcc 209 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 747 tagaaacctatcctatatatttcgaatcctagtcaatcgttatccatatttggggtatcc 688 Query: 210 aagctttggggtatccaag-ggtagggtatccaagggtagggtatccaagtgtatggtat 268 ||||||||||||||||||| | |||||||||||||||||||||||||| ||| ||||| Sbjct: 687 aagctttggggtatccaagctttggggtatccaagggtagggtatccaagggtagggtat 628 Query: 269 ccaagtgtagggcatccaagtgaagggtatccaactatagggtaccaaattatagggtac 328 ||||||||| || ||||||||| |||| |||||| | |||||| | || |||||||||| Sbjct: 627 ccaagtgtatggtatccaagtgtagggcatccaagtgaagggtatccaactatagggtac 568 Query: 329 caaggtatagggtaccaaagtataggttacc 359 ||| ||||||||||||| ||||||| |||| Sbjct: 567 caaattatagggtaccaaggtatagggtacc 537 Score = 456 bits (230), Expect = e-128 Identities = 230/230 (100%) Strand = Plus / Minus Query: 198 tttggggtatccaagctttggggtatccaagggtagggtatccaagggtagggtatccaa 257 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 683 tttggggtatccaagctttggggtatccaagggtagggtatccaagggtagggtatccaa 624 Query: 258 gtgtatggtatccaagtgtagggcatccaagtgaagggtatccaactatagggtaccaaa 317 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 623 gtgtatggtatccaagtgtagggcatccaagtgaagggtatccaactatagggtaccaaa 564 Query: 318 ttatagggtaccaaggtatagggtaccaaagtataggttacccagtgtaggatatcccag 377 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 563 ttatagggtaccaaggtatagggtaccaaagtataggttacccagtgtaggatatcccag 504 Query: 378 tgttgggtatcccagcatatgagagctattataatctgaatccaataata 427 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 503 tgttgggtatcccagcatatgagagctattataatctgaatccaataata 454 >BEST:GH11908-RA feature: mRNA loc=2R:join(16846975..16847117, 16847173..16847892);ID=FBan0009284;gene_id=FBgn0046297;g ene_sym=BEST:GH11908;sym=CG9284;scaffold=AE003455;len=86 3 Length = 863 Score = 490 bits (247), Expect = e-138 Identities = 311/331 (93%), Gaps = 1/331 (0%) Strand = Plus / Minus Query: 30 gacgcttattaaagtctttaattaatcaacgtagattgacgttttaaataatctattcat 89 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 860 gacgcttattaaagtctttaattaatcaacgtagattgacgttttaaataatctattcat 801 Query: 90 tcttgagtttgggaacagccgtcctaataacagtcaaatatggggtatccaagttaatcc 149 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 800 tcttgagtttgggaacagccgtcctaataacagtcaaatatggggtatccaagttaatcc 741 Query: 150 tagaaacctatcctatatatttcgaatcctagtcaatcgttatccatatttggggtatcc 209 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 740 tagaaacctatcctatatatttcgaatcctagtcaatcgttatccatatttggggtatcc 681 Query: 210 aagctttggggtatccaag-ggtagggtatccaagggtagggtatccaagtgtatggtat 268 ||||||||||||||||||| | |||||||||||||||||||||||||| ||| ||||| Sbjct: 680 aagctttggggtatccaagctttggggtatccaagggtagggtatccaagggtagggtat 621 Query: 269 ccaagtgtagggcatccaagtgaagggtatccaactatagggtaccaaattatagggtac 328 ||||||||| || ||||||||| |||| |||||| | |||||| | || |||||||||| Sbjct: 620 ccaagtgtatggtatccaagtgtagggcatccaagtgaagggtatccaactatagggtac 561 Query: 329 caaggtatagggtaccaaagtataggttacc 359 ||| ||||||||||||| ||||||| |||| Sbjct: 560 caaattatagggtaccaaggtatagggtacc 530 Score = 456 bits (230), Expect = e-128 Identities = 230/230 (100%) Strand = Plus / Minus Query: 198 tttggggtatccaagctttggggtatccaagggtagggtatccaagggtagggtatccaa 257 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 676 tttggggtatccaagctttggggtatccaagggtagggtatccaagggtagggtatccaa 617 Query: 258 gtgtatggtatccaagtgtagggcatccaagtgaagggtatccaactatagggtaccaaa 317 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 616 gtgtatggtatccaagtgtagggcatccaagtgaagggtatccaactatagggtaccaaa 557 Query: 318 ttatagggtaccaaggtatagggtaccaaagtataggttacccagtgtaggatatcccag 377 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 556 ttatagggtaccaaggtatagggtaccaaagtataggttacccagtgtaggatatcccag 497 Query: 378 tgttgggtatcccagcatatgagagctattataatctgaatccaataata 427 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 496 tgttgggtatcccagcatatgagagctattataatctgaatccaataata 447 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4476 Number of Sequences: 18737 Number of extensions: 4476 Number of successful extensions: 359 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 321 Number of HSP's gapped (non-prelim): 4 length of query: 427 length of database: 41,270,998 effective HSP length: 17 effective length of query: 410 effective length of database: 40,952,469 effective search space: 16790512290 effective search space used: 16790512290 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946557|AI946557 bs27g06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs27g06 5', mRNA sequence. (417 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG9389-RA feature: mRNA loc=3L:complement(21185666..21186174,211... 813 0.0 >CG9389-RA feature: mRNA loc=3L:complement(21185666..21186174,21186243..21186614, 21186693..21187856);ID=FBan0009389;gene_id=FBgn0037064;ge ne_sym=CG9389;sym=CG9389;scaffold=AE003594;len=2045 Length = 2045 Score = 813 bits (410), Expect = 0.0 Identities = 410/410 (100%) Strand = Plus / Minus Query: 8 aaacaactaaaattttaaaatgcaatttaaagctggcctttctggtggtcaattagttag 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1997 aaacaactaaaattttaaaatgcaatttaaagctggcctttctggtggtcaattagttag 1938 Query: 68 ctggcgtcgctgatttttcgccgcctatttcggtgtcagtggtttctggggtatccgaat 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1937 ctggcgtcgctgatttttcgccgcctatttcggtgtcagtggtttctggggtatccgaat 1878 Query: 128 cggggaagtccgtttggctggtaaagtccctggtctccggagcaggcccgtactcattgg 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1877 cggggaagtccgtttggctggtaaagtccctggtctccggagcaggcccgtactcattgg 1818 Query: 188 ggttaacggaacgcggctcgtcgtcacgtggagatggataattctgctgcaggcagttac 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1817 ggttaacggaacgcggctcgtcgtcacgtggagatggataattctgctgcaggcagttac 1758 Query: 248 ccaattcgagggcaaggtagtcagtagaggcagcgaggcagcggcgggacataatgtcca 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1757 ccaattcgagggcaaggtagtcagtagaggcagcgaggcagcggcgggacataatgtcca 1698 Query: 308 actcctctccggccggatccattaccactcctccggcctccgtgactatcaaagcgcctg 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1697 actcctctccggccggatccattaccactcctccggcctccgtgactatcaaagcgcctg 1638 Query: 368 ctgccatatcccaaacgtgcagcccaaagttgtagaaggcatccgccact 417 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1637 ctgccatatcccaaacgtgcagcccaaagttgtagaaggcatccgccact 1588 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,746 Number of Sequences: 18737 Number of extensions: 10746 Number of successful extensions: 766 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 765 Number of HSP's gapped (non-prelim): 1 length of query: 417 length of database: 41,270,998 effective HSP length: 17 effective length of query: 400 effective length of database: 40,952,469 effective search space: 16380987600 effective search space used: 16380987600 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946560|AI946560 bs27g09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs27g09 5', mRNA sequence. (441 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32236-RA feature: mRNA loc=3L:complement(4643868..4645330);ID=... 852 0.0 >CG32236-RA feature: mRNA loc=3L:complement(4643868..4645330);ID=FBan0032236;gene_i d=FBgn0046793;gene_sym=CG32236;sym=CG32236;scaffold=AE003 482;len=1463 Length = 1463 Score = 852 bits (430), Expect = 0.0 Identities = 433/434 (99%) Strand = Plus / Plus Query: 8 tcgatatggcggttcgagagaataaccagttcatgggcagattactcctacaactctaca 67 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 844 tcgatatggcggtgcgagagaataaccagttcatgggcagattactcctacaactctaca 903 Query: 68 cggaactgagtccggaagtggtgctggagtttgtgcgtatggccacccacaacgatgtag 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 904 cggaactgagtccggaagtggtgctggagtttgtgcgtatggccacccacaacgatgtag 963 Query: 128 gatgccatcggtttgtgcgaatattctccaatctctggatggaggctgaacttgtaccgg 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 964 gatgccatcggtttgtgcgaatattctccaatctctggatggaggctgaacttgtaccgg 1023 Query: 188 ctgttcatgattccctgcacaatcaccacagcgtcaagtactcctttttggatcccagca 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1024 ctgttcatgattccctgcacaatcaccacagcgtcaagtactcctttttggatcccagca 1083 Query: 248 agataaccggcgtattatcatacccatgggactatcgccgtcactttccccaaggacttc 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1084 agataaccggcgtattatcatacccatgggactatcgccgtcactttccccaaggacttc 1143 Query: 308 tcagctataccatcagctttaagcaatcggtgattccgtggcagcgggtcatctttggac 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1144 tcagctataccatcagctttaagcaatcggtgattccgtggcagcgggtcatctttggac 1203 Query: 368 gagtttgcggcggcctaagggtgctccaaaattgccacgaattcggcaccaaaaatggca 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1204 gagtttgcggcggcctaagggtgctccaaaattgccacgaattcggcaccaaaaatggca 1263 Query: 428 agaccaagaaaacc 441 |||||||||||||| Sbjct: 1264 agaccaagaaaacc 1277 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9263 Number of Sequences: 18737 Number of extensions: 9263 Number of successful extensions: 635 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 634 Number of HSP's gapped (non-prelim): 1 length of query: 441 length of database: 41,270,998 effective HSP length: 17 effective length of query: 424 effective length of database: 40,952,469 effective search space: 17363846856 effective search space used: 17363846856 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946566|AI946566 bs27h04.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs27h04 5', mRNA sequence. (426 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG18368-RA feature: mRNA loc=2R:8732450..8736033;ID=FBan0018368;... 543 e-154 >CG18368-RA feature: mRNA loc=2R:8732450..8736033;ID=FBan0018368;gene_id=FBgn003386 4;gene_sym=CG18368;sym=CG18368;scaffold=AE003817;len=3584 Length = 3584 Score = 543 bits (274), Expect = e-154 Identities = 289/294 (98%) Strand = Plus / Minus Query: 132 ttactggcgctcatctttgaaatttctcgtaaccatttcagtaaagggatacaaaaagga 191 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3584 ttactggcgctcatctttgaaatttctcgtaaccatttcagtaaagggatacaaaaagga 3525 Query: 192 cgaacccctgcagaaatcgtcccttttgtagcaccgtttgccgaaagggttacaagaatt 251 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3524 cgaacccctgcagaaatcgtcccttttgtagcaccgtttgccgaaagggttacaagaatt 3465 Query: 252 caagggatggagccagaacacactcaggtaatcgttgatggccattggcttcaggttggg 311 |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct: 3464 caagggatggagccagaacacactgaggtaatcgttgatggccagtggcttcaggttggg 3405 Query: 312 aagcaattggcgaacgagaaagttggtctccagcagaggactccgtcgcaaagtttggca 371 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct: 3404 aagcaattggcgaacgagaaagttggtctccagcagaggactccgtcgcaaattttggta 3345 Query: 372 gtacagaggggcaagtccgggaaataaagaccactgacgtggattgaaaaacct 425 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 3344 gtacagaggggcaagcccgggaaataaagaccactgacgtggattgaaaaacct 3291 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9798 Number of Sequences: 18737 Number of extensions: 9798 Number of successful extensions: 738 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 737 Number of HSP's gapped (non-prelim): 1 length of query: 426 length of database: 41,270,998 effective HSP length: 17 effective length of query: 409 effective length of database: 40,952,469 effective search space: 16749559821 effective search space used: 16749559821 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946567|AI946567 bs27h05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs27h05 5', mRNA sequence. (444 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG14670-RA feature: mRNA loc=3R:join(1300621..1301120,1301182..1... 846 0.0 >CG14670-RA feature: mRNA loc=3R:join(1300621..1301120,1301182..1301519, 1302025..1302181,1302260..1303266,1303329..1303477, 1304623..1304761,1304837..1305040,1305106..1305291, 1305352..1305501,1305565..1305708,1310047..1310378, 1310449..1311112);ID=FBan0014670;gene_id=FBgn0037332;gene _sym=CG14670;sym=CG14670;scaffold=AE003602;len=3970 Length = 3970 Score = 846 bits (427), Expect = 0.0 Identities = 427/427 (100%) Strand = Plus / Plus Query: 18 attaataccacacttcagggatcccaagccatcgtcaatatcggaagtggaattaatttg 77 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3047 attaataccacacttcagggatcccaagccatcgtcaatatcggaagtggaattaatttg 3106 Query: 78 aacaattcaagaccaacagtttgcatcaatgacttgataagagaatataatacccgtgtc 137 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3107 aacaattcaagaccaacagtttgcatcaatgacttgataagagaatataatacccgtgtc 3166 Query: 138 ccgaacaacaagttacctatacttaagtacgagctacttattgccatgatattcaatgaa 197 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3167 ccgaacaacaagttacctatacttaagtacgagctacttattgccatgatattcaatgaa 3226 Query: 198 atcgaaagacttttgggagaagtacaaaacggagactttgatagtttttatgcattatac 257 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3227 atcgaaagacttttgggagaagtacaaaacggagactttgatagtttttatgcattatac 3286 Query: 258 tattcgctatggttacacagcgggcaatctgttaagatttgcctacaaaaagatcaggaa 317 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3287 tattcgctatggttacacagcgggcaatctgttaagatttgcctacaaaaagatcaggaa 3346 Query: 318 aaagaggccgaaattgtgggaatcgatgactttggatttttggaggtgaaattaccaact 377 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3347 aaagaggccgaaattgtgggaatcgatgactttggatttttggaggtgaaattaccaact 3406 Query: 378 ggtactatagaaattgtgcagcccgatggaaacagctttgatatgttgaagggattgatt 437 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3407 ggtactatagaaattgtgcagcccgatggaaacagctttgatatgttgaagggattgatt 3466 Query: 438 ataccca 444 ||||||| Sbjct: 3467 ataccca 3473 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7829 Number of Sequences: 18737 Number of extensions: 7829 Number of successful extensions: 498 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 497 Number of HSP's gapped (non-prelim): 1 length of query: 444 length of database: 41,270,998 effective HSP length: 17 effective length of query: 427 effective length of database: 40,952,469 effective search space: 17486704263 effective search space used: 17486704263 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946572|AI946572 bs27h11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs27h11 5', mRNA sequence. (426 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31804-RA feature: mRNA loc=2L:17341578..17342318;ID=FBan003180... 708 0.0 >CG31804-RA feature: mRNA loc=2L:17341578..17342318;ID=FBan0031804;gene_id=FBgn005 1804;gene_sym=CG31804;sym=CG31804;scaffold=AE003654;len= 741 Length = 741 Score = 708 bits (357), Expect = 0.0 Identities = 371/378 (98%) Strand = Plus / Plus Query: 6 agtttcactcttcagtgtccctgatttattccatacacaatcaaaatctgaagtgtagta 65 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4 agtttcactcttcagtgtccctgatttattccatacacaatcaaaatctgaagtgtagta 63 Query: 66 agattttcaaaagggcgaaaaaggcaaattctcttgattatggcagnnnnnnntagttcg 125 |||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 64 agattttcaaaagggcgaaaaaggcaaattctcttgattatggcagaaaaaaatagttcg 123 Query: 126 aacgatggacagtacttccttcaatcgaaacattttatcgattttagacagaacgaaacg 185 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 124 aacgatggacagtacttccttcaatcgaaacattttatcgattttagacagaacgaaacg 183 Query: 186 gacacagtggattcggctatggatgtagctaccaggcaaagtgcatccaccaaaaagaag 245 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 184 gacacagtggattcggctatggatgtagctaccaggcaaagtgcatccaccaaaaagaag 243 Query: 246 atacatatccaccaaggactaggatctagaaaaacgtcaaagaatattaaacggaaaatg 305 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 244 atacatatccaccaaggactaggatctagaaaaacgtcaaagaatattaaacggaaaatg 303 Query: 306 tcgaaagctagtcaagacctgaaaagaacttctaaaactgccgcgaaaccacagaagcaa 365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 304 tcgaaagctagtcaagacctgaaaagaacttctaaaactgccgcgaaaccacagaagcaa 363 Query: 366 aggttatcacagagtttt 383 |||||||||||||||||| Sbjct: 364 aggttatcacagagtttt 381 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7068 Number of Sequences: 18737 Number of extensions: 7068 Number of successful extensions: 489 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 486 Number of HSP's gapped (non-prelim): 2 length of query: 426 length of database: 41,270,998 effective HSP length: 17 effective length of query: 409 effective length of database: 40,952,469 effective search space: 16749559821 effective search space used: 16749559821 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946575|AI946575 bs28a02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs28a02 5', mRNA sequence. (437 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31870-RA feature: mRNA loc=2L:join(10782651..10782776,10782836... 789 0.0 CG31870-RC feature: mRNA loc=2L:join(10782651..10782776,10782825... 636 0.0 >CG31870-RA feature: mRNA loc=2L:join(10782651..10782776, 10782836..10783185);ID=FBan0031870;gene_id=FBgn0051870;g ene_sym=CG31870;sym=CG31870;scaffold=AE003630;len=476 Length = 476 Score = 789 bits (398), Expect = 0.0 Identities = 407/410 (99%) Strand = Plus / Plus Query: 8 tccaaatctaagatatttaaattagtattgttgaaattagccacagcgaataatttgtga 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 49 tccaaatctaagatatttaaattagtattgttgaaattagccacagcgaataatttgtga 108 Query: 68 acatgtctaggaactatggacctggacctggagcctacatgctacccagcagttttggac 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 109 acatgtctaggaactatggacctggacctggagcctacatgctacccagcagttttggac 168 Query: 128 aaaaaggacctcagttctccttcggccgcagaattgaccgcaaaagagatgaaaaacctg 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 169 aaaaaggacctcagttctccttcggccgcagaattgaccgcaaaagagatgaaaaacctg 228 Query: 188 gtccgggtcctgctgcttataaggtggataaagtgacacgctacggaaacgcggagggtc 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 229 gtccgggtcctgctgcttataaggtggataaagtgacacgctacggaaacgcggagggtc 288 Query: 248 cacagttttccatgtatgttaggaacttcaagatgaaaccccttcccattcgattgtctt 307 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 289 cacagttttccatgtatgttaggaactccaagatgaaaccccttcccattcgattgtctt 348 Query: 308 gaagattcgatcctgatcccgtatttagtaatgaagtttctaaaacagtcgatattgtga 367 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 349 gaagattcgatcctgattccgtatttagtaatgaagtttctaaaacagtcgatattgtga 408 Query: 368 tgtacatacatagcggcgaaatatgcaattaaatctataaatatttatat 417 |||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 409 tgtacatacatagcggcgaaatatgcaagtaaatctataaatatttatat 458 >CG31870-RC feature: mRNA loc=2L:join(10782651..10782776, 10782825..10783185);ID=FBan0031870;gene_id=FBgn0051870;g ene_sym=CG31870;sym=CG31870;scaffold=AE003630;len=487 Length = 487 Score = 636 bits (321), Expect = 0.0 Identities = 330/333 (99%) Strand = Plus / Plus Query: 85 ggacctggacctggagcctacatgctacccagcagttttggacaaaaaggacctcagttc 144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 137 ggacctggacctggagcctacatgctacccagcagttttggacaaaaaggacctcagttc 196 Query: 145 tccttcggccgcagaattgaccgcaaaagagatgaaaaacctggtccgggtcctgctgct 204 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 197 tccttcggccgcagaattgaccgcaaaagagatgaaaaacctggtccgggtcctgctgct 256 Query: 205 tataaggtggataaagtgacacgctacggaaacgcggagggtccacagttttccatgtat 264 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 257 tataaggtggataaagtgacacgctacggaaacgcggagggtccacagttttccatgtat 316 Query: 265 gttaggaacttcaagatgaaaccccttcccattcgattgtcttgaagattcgatcctgat 324 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 317 gttaggaactccaagatgaaaccccttcccattcgattgtcttgaagattcgatcctgat 376 Query: 325 cccgtatttagtaatgaagtttctaaaacagtcgatattgtgatgtacatacatagcggc 384 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 377 tccgtatttagtaatgaagtttctaaaacagtcgatattgtgatgtacatacatagcggc 436 Query: 385 gaaatatgcaattaaatctataaatatttatat 417 ||||||||||| ||||||||||||||||||||| Sbjct: 437 gaaatatgcaagtaaatctataaatatttatat 469 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8505 Number of Sequences: 18737 Number of extensions: 8505 Number of successful extensions: 710 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 705 Number of HSP's gapped (non-prelim): 5 length of query: 437 length of database: 41,270,998 effective HSP length: 17 effective length of query: 420 effective length of database: 40,952,469 effective search space: 17200036980 effective search space used: 17200036980 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946597|AI946597 bs28c08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs28c08 5', mRNA sequence. (467 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CR31696-RB feature: ncRNA loc=2L:join(16818223..16818292,1681835... 472 e-132 CR31696-RA feature: ncRNA loc=2L:join(16816677..16816747,1681729... 472 e-132 >CR31696-RB feature: ncRNA loc=2L:join(16818223..16818292,16818354..16818662, 16819429..16819509, 16819583..16819971);ID=FBan0031696;gene_id=FBgn0047133;g ene_sym=CR31696;sym=CR31696;type=ncRNA;scaffold=AE003652 ;len=849 Length = 849 Score = 472 bits (238), Expect = e-132 Identities = 238/238 (100%) Strand = Plus / Plus Query: 230 aggatagcttacatgttgaatttcaattccaagccgccggccatgccatcatcttgtggt 289 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 245 aggatagcttacatgttgaatttcaattccaagccgccggccatgccatcatcttgtggt 304 Query: 290 ccggtggagcttctaggaccctacgcgtttaagatgtttagcatttaatggatttctact 349 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 305 ccggtggagcttctaggaccctacgcgtttaagatgtttagcatttaatggatttctact 364 Query: 350 agtaacctaagccagatgacgtcaatgccaccagttgccaaaatcgaaggctcggcgatc 409 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 365 agtaacctaagccagatgacgtcaatgccaccagttgccaaaatcgaaggctcggcgatc 424 Query: 410 aggatgagcactttgatgggtaacccctgccatgtgtgctctgccacatttcattcat 467 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 425 aggatgagcactttgatgggtaacccctgccatgtgtgctctgccacatttcattcat 482 >CR31696-RA feature: ncRNA loc=2L:join(16816677..16816747,16817297..16817439, 16818354..16818662,16819429..16819509, 16819583..16819971);ID=FBan0031696;gene_id=FBgn0047133;g ene_sym=CR31696;sym=CR31696;type=ncRNA;scaffold=AE003652 ;len=993 Length = 993 Score = 472 bits (238), Expect = e-132 Identities = 238/238 (100%) Strand = Plus / Plus Query: 230 aggatagcttacatgttgaatttcaattccaagccgccggccatgccatcatcttgtggt 289 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 389 aggatagcttacatgttgaatttcaattccaagccgccggccatgccatcatcttgtggt 448 Query: 290 ccggtggagcttctaggaccctacgcgtttaagatgtttagcatttaatggatttctact 349 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 449 ccggtggagcttctaggaccctacgcgtttaagatgtttagcatttaatggatttctact 508 Query: 350 agtaacctaagccagatgacgtcaatgccaccagttgccaaaatcgaaggctcggcgatc 409 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 509 agtaacctaagccagatgacgtcaatgccaccagttgccaaaatcgaaggctcggcgatc 568 Query: 410 aggatgagcactttgatgggtaacccctgccatgtgtgctctgccacatttcattcat 467 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 569 aggatgagcactttgatgggtaacccctgccatgtgtgctctgccacatttcattcat 626 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,223 Number of Sequences: 18737 Number of extensions: 10223 Number of successful extensions: 258 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 253 Number of HSP's gapped (non-prelim): 5 length of query: 467 length of database: 41,270,998 effective HSP length: 17 effective length of query: 450 effective length of database: 40,952,469 effective search space: 18428611050 effective search space used: 18428611050 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946600|AI946600 bs28c11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs28c11 5', mRNA sequence. (444 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG11999-RA feature: mRNA loc=3R:complement(1179436..1180152,1180... 817 0.0 >CG11999-RA feature: mRNA loc=3R:complement(1179436..1180152, 1180280..1180466);ID=FBan0011999;gene_id=FBgn0037312;gen e_sym=CG11999;sym=CG11999;scaffold=AE003603;len=904 Length = 904 Score = 817 bits (412), Expect = 0.0 Identities = 412/412 (100%) Strand = Plus / Minus Query: 33 gagtttaaataattttaatttgatggtttgcttttggggtcttcaataaaaattcaacta 92 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 899 gagtttaaataattttaatttgatggtttgcttttggggtcttcaataaaaattcaacta 840 Query: 93 agttataaattacagaactaatagtagtatgaaactgcagcagtcgaggtccttagggag 152 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 839 agttataaattacagaactaatagtagtatgaaactgcagcagtcgaggtccttagggag 780 Query: 153 cactacagctccgagtgggcgtactcgtcgtgcgttgagctcttctccttgggcacgata 212 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 779 cactacagctccgagtgggcgtactcgtcgtgcgttgagctcttctccttgggcacgata 720 Query: 213 aagaggccctccgccgtggtccagcgcgttccgtgctgcggcttgtggacgccaacgatt 272 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 719 aagaggccctccgccgtggtccagcgcgttccgtgctgcggcttgtggacgccaacgatt 660 Query: 273 tccatttggccggagatgggtctgccataggagcggccggacatgcccaggtacatgccg 332 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 659 tccatttggccggagatgggtctgccataggagcggccggacatgcccaggtacatgccg 600 Query: 333 gtgtcgatgtggcgcagcctaacgtgggcactgcgcatccagttctcgttggagcagacc 392 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 599 gtgtcgatgtggcgcagcctaacgtgggcactgcgcatccagttctcgttggagcagacc 540 Query: 393 acctcccagtggtcgccggtgtcgccgagtccatccgttccgtacgcggaca 444 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 539 acctcccagtggtcgccggtgtcgccgagtccatccgttccgtacgcggaca 488 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,886 Number of Sequences: 18737 Number of extensions: 10886 Number of successful extensions: 812 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 811 Number of HSP's gapped (non-prelim): 1 length of query: 444 length of database: 41,270,998 effective HSP length: 17 effective length of query: 427 effective length of database: 40,952,469 effective search space: 17486704263 effective search space used: 17486704263 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946614|AI946614 bs28g05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs28g05 5', mRNA sequence. (437 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value chb-RC feature: mRNA loc=3L:join(21095137..21095218,21095373..21... 819 0.0 chb-RB feature: mRNA loc=3L:join(21090129..21090321,21095373..21... 819 0.0 chb-RA feature: mRNA loc=3L:join(21093076..21093804,21095373..21... 819 0.0 >chb-RC feature: mRNA loc=3L:join(21095137..21095218, 21095373..21100554);ID=FBan0032435;gene_id=FBgn0021760;ge ne_sym=chb;sym=CG32435;scaffold=AE003593;len=5264 Length = 5264 Score = 819 bits (413), Expect = 0.0 Identities = 419/421 (99%) Strand = Plus / Plus Query: 17 gaactcctccgcggcatcggcgtcatgattgcgggagcccttaataggattcctgcatca 76 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 4567 gaactcctccgcggcatcgtcgtcatgattgcgggagcccttaataggattcctgcatca 4626 Query: 77 gcaccaccacaaacaagacacagacgcggttgcttccctcggcctgagaaggaagtgagg 136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4627 gcaccaccacaaacaagacacagacgcggttgcttccctcggcctgagaaggaagtgagg 4686 Query: 137 agcggcggacattaaataatatattattacattaactaattatttataactaattattac 196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4687 agcggcggacattaaataatatattattacattaactaattatttataactaattattac 4746 Query: 197 cgatcatccgttacttgtgtaactgctcgatgcatatattcagcagatgcaaatgcggcc 256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4747 cgatcatccgttacttgtgtaactgctcgatgcatatattcagcagatgcaaatgcggcc 4806 Query: 257 cgaaagaaagtcaagggccatcgcccatctaatgtgagcagaaaaactatctatacataa 316 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 4807 cgaaagaaagtcaagggccatcgcccatctaatgtgagcagaaaaactatttatacataa 4866 Query: 317 acgggaactaaagcgagtaaatccgcaaagtgtactaaaattgtagccaactccgcaatc 376 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4867 acgggaactaaagcgagtaaatccgcaaagtgtactaaaattgtagccaactccgcaatc 4926 Query: 377 ctcacttctcacatcagttgtacgtctttttaccagctcctaactattaacgctgattct 436 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4927 ctcacttctcacatcagttgtacgtctttttaccagctcctaactattaacgctgattct 4986 Query: 437 g 437 | Sbjct: 4987 g 4987 >chb-RB feature: mRNA loc=3L:join(21090129..21090321, 21095373..21100554);ID=FBan0032435;gene_id=FBgn0021760;ge ne_sym=chb;sym=CG32435;scaffold=AE003593;len=5375 Length = 5375 Score = 819 bits (413), Expect = 0.0 Identities = 419/421 (99%) Strand = Plus / Plus Query: 17 gaactcctccgcggcatcggcgtcatgattgcgggagcccttaataggattcctgcatca 76 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 4678 gaactcctccgcggcatcgtcgtcatgattgcgggagcccttaataggattcctgcatca 4737 Query: 77 gcaccaccacaaacaagacacagacgcggttgcttccctcggcctgagaaggaagtgagg 136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4738 gcaccaccacaaacaagacacagacgcggttgcttccctcggcctgagaaggaagtgagg 4797 Query: 137 agcggcggacattaaataatatattattacattaactaattatttataactaattattac 196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4798 agcggcggacattaaataatatattattacattaactaattatttataactaattattac 4857 Query: 197 cgatcatccgttacttgtgtaactgctcgatgcatatattcagcagatgcaaatgcggcc 256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4858 cgatcatccgttacttgtgtaactgctcgatgcatatattcagcagatgcaaatgcggcc 4917 Query: 257 cgaaagaaagtcaagggccatcgcccatctaatgtgagcagaaaaactatctatacataa 316 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 4918 cgaaagaaagtcaagggccatcgcccatctaatgtgagcagaaaaactatttatacataa 4977 Query: 317 acgggaactaaagcgagtaaatccgcaaagtgtactaaaattgtagccaactccgcaatc 376 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4978 acgggaactaaagcgagtaaatccgcaaagtgtactaaaattgtagccaactccgcaatc 5037 Query: 377 ctcacttctcacatcagttgtacgtctttttaccagctcctaactattaacgctgattct 436 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5038 ctcacttctcacatcagttgtacgtctttttaccagctcctaactattaacgctgattct 5097 Query: 437 g 437 | Sbjct: 5098 g 5098 >chb-RA feature: mRNA loc=3L:join(21093076..21093804, 21095373..21100554);ID=FBan0032435;gene_id=FBgn0021760;ge ne_sym=chb;sym=CG32435;scaffold=AE003593;len=5911 Length = 5911 Score = 819 bits (413), Expect = 0.0 Identities = 419/421 (99%) Strand = Plus / Plus Query: 17 gaactcctccgcggcatcggcgtcatgattgcgggagcccttaataggattcctgcatca 76 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 5214 gaactcctccgcggcatcgtcgtcatgattgcgggagcccttaataggattcctgcatca 5273 Query: 77 gcaccaccacaaacaagacacagacgcggttgcttccctcggcctgagaaggaagtgagg 136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5274 gcaccaccacaaacaagacacagacgcggttgcttccctcggcctgagaaggaagtgagg 5333 Query: 137 agcggcggacattaaataatatattattacattaactaattatttataactaattattac 196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5334 agcggcggacattaaataatatattattacattaactaattatttataactaattattac 5393 Query: 197 cgatcatccgttacttgtgtaactgctcgatgcatatattcagcagatgcaaatgcggcc 256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5394 cgatcatccgttacttgtgtaactgctcgatgcatatattcagcagatgcaaatgcggcc 5453 Query: 257 cgaaagaaagtcaagggccatcgcccatctaatgtgagcagaaaaactatctatacataa 316 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 5454 cgaaagaaagtcaagggccatcgcccatctaatgtgagcagaaaaactatttatacataa 5513 Query: 317 acgggaactaaagcgagtaaatccgcaaagtgtactaaaattgtagccaactccgcaatc 376 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5514 acgggaactaaagcgagtaaatccgcaaagtgtactaaaattgtagccaactccgcaatc 5573 Query: 377 ctcacttctcacatcagttgtacgtctttttaccagctcctaactattaacgctgattct 436 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5574 ctcacttctcacatcagttgtacgtctttttaccagctcctaactattaacgctgattct 5633 Query: 437 g 437 | Sbjct: 5634 g 5634 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,051 Number of Sequences: 18737 Number of extensions: 10051 Number of successful extensions: 804 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 798 Number of HSP's gapped (non-prelim): 6 length of query: 437 length of database: 41,270,998 effective HSP length: 17 effective length of query: 420 effective length of database: 40,952,469 effective search space: 17200036980 effective search space used: 17200036980 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946617|AI946617 bs28g09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs28g09 5', mRNA sequence. (418 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG9922-RA feature: mRNA loc=3R:complement(9860757..9861019,98611... 490 e-138 >CG9922-RA feature: mRNA loc=3R:complement(9860757..9861019,9861185..9861292, 9861362..9861423, 9861565..9861906);ID=FBan0009922;gene_id=FBgn0038196;gen e_sym=CG9922;sym=CG9922;scaffold=AE003702;len=775 Length = 775 Score = 490 bits (247), Expect = e-138 Identities = 265/274 (96%) Strand = Plus / Plus Query: 145 aattaatttaatacagcgctaagtgcatattgaaaatacacaatttccaaattcgaaatt 204 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 aattaatttaatacagcgctaagtgcatattgaaaatacacaatttccaaattcgaaatt 60 Query: 205 acataaaaaacttcaaaaactattacaataaaagccaagcaaacactcatagattattag 264 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 acataaaaaacttcaaaaactattacaataaaagccaagcaaacactcatagattattag 120 Query: 265 ttaaattatgtcgattgtgttatcgctagtagtccatctctaatcgcacgaggtgaagaa 324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 ttaaattatgtcgattgtgttatcgctagtagtccatctctaatcgcacgaggtgaagaa 180 Query: 325 atcgcaaagaatttcggaacttttattgaattaaacatnnnnnnnnncaattgaaaatga 384 |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 181 atcgcaaagaatttcggaacttttattgaattaaacataaaaaaaaacaattgaaaatga 240 Query: 385 cggaagcagcggaaatcaacggcagagaagaagt 418 |||||||||||||||||||||||||||||||||| Sbjct: 241 cggaagcagcggaaatcaacggcagagaagaagt 274 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9252 Number of Sequences: 18737 Number of extensions: 9252 Number of successful extensions: 680 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 678 Number of HSP's gapped (non-prelim): 2 length of query: 418 length of database: 41,270,998 effective HSP length: 17 effective length of query: 401 effective length of database: 40,952,469 effective search space: 16421940069 effective search space used: 16421940069 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946635|AI946635 bs29a07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs29a07 5', mRNA sequence. (534 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG12983-RA feature: mRNA loc=3L:complement(20880144..20880668,20... 1045 0.0 >CG12983-RA feature: mRNA loc=3L:complement(20880144..20880668,20880725..20880896, 20880966..20882419,20882478..20882685, 20882744..20883031,20883086..20883187, 20883405..20883793, 20883852..20884038);ID=FBan0012983;gene_id=FBgn0037040;g ene_sym=CG12983;sym=CG12983;scaffold=AE003593;len=3325 Length = 3325 Score = 1045 bits (527), Expect = 0.0 Identities = 527/527 (100%) Strand = Plus / Plus Query: 8 aaaaaacatttttataaaatggtaaaaaggaagaaccaggacgcggtttccattaaacca 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31 aaaaaacatttttataaaatggtaaaaaggaagaaccaggacgcggtttccattaaacca 90 Query: 68 gccgtggaacttctttcggaggaggagtggatggcccgaagaaatatatatatgcagcgt 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 91 gccgtggaacttctttcggaggaggagtggatggcccgaagaaatatatatatgcagcgt 150 Query: 128 ttggcggatcttaagacaagtgtagcctttattgatgatgccgtcgaggagtacaaggaa 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 151 ttggcggatcttaagacaagtgtagcctttattgatgatgccgtcgaggagtacaaggaa 210 Query: 188 cttcagaaacaaaagttgcgtaacgacaaatggaatagttacttggcttgtgatggatta 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 211 cttcagaaacaaaagttgcgtaacgacaaatggaatagttacttggcttgtgatggatta 270 Query: 248 cccaatcccagtcgacccgccgaaattcgaaaattcatattccagcttaattttatggag 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 271 cccaatcccagtcgacccgccgaaattcgaaaattcatattccagcttaattttatggag 330 Query: 308 caagagtcgtgcgctaacgaaataagctgggttctttcagtggacgagtgtagtgtcctc 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 331 caagagtcgtgcgctaacgaaataagctgggttctttcagtggacgagtgtagtgtcctc 390 Query: 368 tctcaagcacctgacagatgcgataggacccgaaaaatcatggaaaaatcaaggccaaac 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 391 tctcaagcacctgacagatgcgataggacccgaaaaatcatggaaaaatcaaggccaaac 450 Query: 428 gtaggacagctctacgatgaaacagtgcaacgtatcctggcaaccatagaaagggtacag 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 451 gtaggacagctctacgatgaaacagtgcaacgtatcctggcaaccatagaaagggtacag 510 Query: 488 agagttctccgtaacgacgatgagctcgtacatttgccaacatttca 534 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 511 agagttctccgtaacgacgatgagctcgtacatttgccaacatttca 557 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,941 Number of Sequences: 18737 Number of extensions: 13941 Number of successful extensions: 248 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 247 Number of HSP's gapped (non-prelim): 1 length of query: 534 length of database: 41,270,998 effective HSP length: 17 effective length of query: 517 effective length of database: 40,952,469 effective search space: 21172426473 effective search space used: 21172426473 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946637|AI946637 bs29a09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs29a09 5', mRNA sequence. (635 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value ms(2)35Ci-RA feature: mRNA loc=2L:join(15270630..15270763,152708... 1229 0.0 ms(2)35Ci-RB feature: mRNA loc=2L:join(15270630..15270763,152708... 1203 0.0 >ms(2)35Ci-RA feature: mRNA loc=2L:join(15270630..15270763,15270821..15271031, 15271094..15271232, 15271294..15271537);ID=FBan0031733;gene_id=FBgn0011239;g ene_sym=ms(2)35Ci;sym=CG31733;scaffold=AE003647;len=728 Length = 728 Score = 1229 bits (620), Expect = 0.0 Identities = 626/628 (99%) Strand = Plus / Plus Query: 8 ggagttccttcgaaaaattgtcaaatgttgtagggtcctcggatacctggcaacagaaat 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31 ggagttccttcgaaaaattgtcaaatgttgtagggtcctcggatacctggcaacagaaat 90 Query: 68 ggagctcggaagagacttcatcaaaaggacgttagaattgtcacaatgccaataatcaag 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 91 ggagctcggaagagacttcatcaaaaggacgttagaattgtcacaatgccaataatcaag 150 Query: 128 aagttctgctattgttttagtctaagaattggcgcattttcaattgcgtacgcaggtctt 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 151 aagttctgctattgttttagtctaagaattggcgcattttcaattgcgtacgcaggtctt 210 Query: 188 acaatggatgtattagataccgtagcgactatatatactaagtcgcaatattgcgctgat 247 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 211 acaatggatgtattagatacagtagcgactatatatactaagtcgcaatattgcgctgat 270 Query: 248 atactactcctgtggataatttccaccatttggaatatcatttccgcattggttcttttg 307 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 271 atactactcctctggataatttccaccatttggaatatcatttccgcattggttcttttg 330 Query: 308 actgcactttttcgggaaaatccgcatttgctgccagttcatctggtgacttctctttgt 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 331 actgcactttttcgggaaaatccgcatttgctgccagttcatctggtgacttctctttgt 390 Query: 368 ggcctgatgctcgaaatgaccaatcacatggtgattgcctcccttggcagaaccgattac 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 391 ggcctgatgctcgaaatgaccaatcacatggtgattgcctcccttggcagaaccgattac 450 Query: 428 gttttgatatcctatgcgttcattatgattgcctttgtatctgcggacgtcgtgatcgtg 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 451 gttttgatatcctatgcgttcattatgattgcctttgtatctgcggacgtcgtgatcgtg 510 Query: 488 ctgagctactaccaatcggaggtttagtgaaccactccgattacccattaacccaggcaa 547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 511 ctgagctactaccaatcggaggtttagtgaaccactccgattacccattaacccaggcaa 570 Query: 548 ccgaccgggcgcagcatgtagcattttgtggtgcgcgattaggcgcgaaaatttatttgg 607 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 571 ccgaccgggcgcagcatgtagcattttgtggtgcgcgattaggcgcgaaaatttatttgg 630 Query: 608 aaaatgttgcgcaatccgcgccgtgcat 635 |||||||||||||||||||||||||||| Sbjct: 631 aaaatgttgcgcaatccgcgccgtgcat 658 >ms(2)35Ci-RB feature: mRNA loc=2L:join(15270630..15270763,15270821..15271031, 15271094..15271236, 15271294..15271628);ID=FBan0031733;gene_id=FBgn0011239;g ene_sym=ms(2)35Ci;sym=CG31733;scaffold=AE003647;len=823 Length = 823 Score = 1203 bits (607), Expect = 0.0 Identities = 626/632 (99%), Gaps = 4/632 (0%) Strand = Plus / Plus Query: 8 ggagttccttcgaaaaattgtcaaatgttgtagggtcctcggatacctggcaacagaaat 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 31 ggagttccttcgaaaaattgtcaaatgttgtagggtcctcggatacctggcaacagaaat 90 Query: 68 ggagctcggaagagacttcatcaaaaggacgttagaattgtcacaatgccaataatcaag 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 91 ggagctcggaagagacttcatcaaaaggacgttagaattgtcacaatgccaataatcaag 150 Query: 128 aagttctgctattgttttagtctaagaattggcgcattttcaattgcgtacgcaggtctt 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 151 aagttctgctattgttttagtctaagaattggcgcattttcaattgcgtacgcaggtctt 210 Query: 188 acaatggatgtattagataccgtagcgactatatatactaagtcgcaatattgcgctgat 247 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 211 acaatggatgtattagatacagtagcgactatatatactaagtcgcaatattgcgctgat 270 Query: 248 atactactcctgtggataatttccaccatttggaatatcatttccgcattggttcttttg 307 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 271 atactactcctctggataatttccaccatttggaatatcatttccgcattggttcttttg 330 Query: 308 actgcactttttcgggaaaatccgcatttgctgccagttcatctggtgacttctctttgt 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 331 actgcactttttcgggaaaatccgcatttgctgccagttcatctggtgacttctctttgt 390 Query: 368 ggcctgatgctcgaaatgaccaatcacatggtgattgcctcccttggcagaaccgattac 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 391 ggcctgatgctcgaaatgaccaatcacatggtgattgcctcccttggcagaaccgattac 450 Query: 428 gttttgatatcctatgcgttcattatgattgcct----ttgtatctgcggacgtcgtgat 483 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 451 gttttgatatcctatgcgttcattatgattgcctgtaattgtatctgcggacgtcgtgat 510 Query: 484 cgtgctgagctactaccaatcggaggtttagtgaaccactccgattacccattaacccag 543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 511 cgtgctgagctactaccaatcggaggtttagtgaaccactccgattacccattaacccag 570 Query: 544 gcaaccgaccgggcgcagcatgtagcattttgtggtgcgcgattaggcgcgaaaatttat 603 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 571 gcaaccgaccgggcgcagcatgtagcattttgtggtgcgcgattaggcgcgaaaatttat 630 Query: 604 ttggaaaatgttgcgcaatccgcgccgtgcat 635 |||||||||||||||||||||||||||||||| Sbjct: 631 ttggaaaatgttgcgcaatccgcgccgtgcat 662 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,462 Number of Sequences: 18737 Number of extensions: 11462 Number of successful extensions: 213 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 210 Number of HSP's gapped (non-prelim): 2 length of query: 635 length of database: 41,270,998 effective HSP length: 17 effective length of query: 618 effective length of database: 40,952,469 effective search space: 25308625842 effective search space used: 25308625842 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946639|AI946639 bs29a11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs29a11 5', mRNA sequence. (705 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,265 Number of Sequences: 18737 Number of extensions: 16265 Number of successful extensions: 406 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 406 Number of HSP's gapped (non-prelim): 0 length of query: 705 length of database: 41,270,998 effective HSP length: 17 effective length of query: 688 effective length of database: 40,952,469 effective search space: 28175298672 effective search space used: 28175298672 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946642|AI946642 bs29b02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs29b02 5', mRNA sequence. (389 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG30430-RA feature: mRNA loc=2R:join(20173002..20173106,20173163... 710 0.0 >CG30430-RA feature: mRNA loc=2R:join(20173002..20173106, 20173163..20173482);ID=FBan0030430;gene_id=FBgn0050430;g ene_sym=CG30430;sym=CG30430;scaffold=AE003466;len=425 Length = 425 Score = 710 bits (358), Expect = 0.0 Identities = 361/362 (99%) Strand = Plus / Plus Query: 8 aaaatttattgttaattgtcaaagtttttggagatttgttttttaaaactcacataaatt 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 60 aaaatttattgttaattgtcaaagtttttggagatttgttttttaaaactcacataaatt 119 Query: 68 cgtgatgtgttgcgggccctgctgcggaacttgctactacccttgctgtagcccctgctt 127 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 120 cgtgatgtgttgcgggccctgctgtggaacttgctactacccttgctgtagcccctgctt 179 Query: 128 tagtggccgttgttttggaccacgatgcggattctatagtggaccatgtggaccttgctg 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 180 tagtggccgttgttttggaccacgatgcggattctatagtggaccatgtggaccttgctg 239 Query: 188 cgggggcggatgctgcagcagctgcggaccgtcttgttaattttggtactcggtaaccaa 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 240 cgggggcggatgctgcagcagctgcggaccgtcttgttaattttggtactcggtaaccaa 299 Query: 248 aactttttgaagacaattatttattaacatggcctattcgtcttgaaaacaagatcaagt 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 300 aactttttgaagacaattatttattaacatggcctattcgtcttgaaaacaagatcaagt 359 Query: 308 cgtaataaaggtgtttgactttccaagtcttttttattacaggaactagattcctgtcca 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 360 cgtaataaaggtgtttgactttccaagtcttttttattacaggaactagattcctgtcca 419 Query: 368 tt 369 || Sbjct: 420 tt 421 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,704 Number of Sequences: 18737 Number of extensions: 10704 Number of successful extensions: 1021 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1020 Number of HSP's gapped (non-prelim): 1 length of query: 389 length of database: 41,270,998 effective HSP length: 17 effective length of query: 372 effective length of database: 40,952,469 effective search space: 15234318468 effective search space used: 15234318468 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946649|AI946649 bs29b09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs29b09 5', mRNA sequence. (670 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,186 Number of Sequences: 18737 Number of extensions: 14186 Number of successful extensions: 292 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 292 Number of HSP's gapped (non-prelim): 0 length of query: 670 length of database: 41,270,998 effective HSP length: 17 effective length of query: 653 effective length of database: 40,952,469 effective search space: 26741962257 effective search space used: 26741962257 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946650|AI946650 bs29b10.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs29b10 5', mRNA sequence. (509 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31907-RA feature: mRNA loc=2L:complement(7051466..7053001);ID=... 979 0.0 >CG31907-RA feature: mRNA loc=2L:complement(7051466..7053001);ID=FBan0031907;gene_ id=FBgn0051907;gene_sym=CG31907;sym=CG31907;scaffold=AE0 03616;len=1536 Length = 1536 Score = 979 bits (494), Expect = 0.0 Identities = 500/502 (99%) Strand = Plus / Plus Query: 8 ccttacccaagttaatataactggagtcaacagacttacataaagtacaatggcactttc 67 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 13 ccttacccaagttaatataactggagtcaacagacttacataaagtaccatggcactttc 72 Query: 68 cgcaacgaaggacactagtccatggaccaacatggtgaaaagggtaacagcgagcaaata 127 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 73 cgcaacgaaggacactagtccatggaccaacatggtgaagagggtaacagcgagcaaata 132 Query: 128 cgatgtagtctcggtcaagacgctgctgatgtttatcaacagcaaactggattgcgaatt 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 133 cgatgtagtctcggtcaagacgctgctgatgtttatcaacagcaaactggattgcgaatt 192 Query: 188 gcgaggctttgaggatctgaaaacaggagcagtatattgccaactgatgcacagactctt 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 193 gcgaggctttgaggatctgaaaacaggagcagtatattgccaactgatgcacagactctt 252 Query: 248 tcccaattcgatacaaattcataaggtcaagttttatacgaacgacatcagcgactttca 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 253 tcccaattcgatacaaattcataaggtcaagttttatacgaacgacatcagcgactttca 312 Query: 308 gttaaatttccggttactaaacaattgctttcaaaaactaagagtaaccgtttatatgcc 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 313 gttaaatttccggttactaaacaattgctttcaaaaactaagagtaaccgtttatatgcc 372 Query: 368 agtgcatgagttaactctgggacacaatcaagtggtcttctgcaattggatatacaagtt 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 373 agtgcatgagttaactctgggacacaatcaagtggtcttctgcaattggatatacaagtt 432 Query: 428 ctatgaagcaaacgacaaggggaacgaatacgatgccagaaaggtgagaaaaggctcgcc 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 433 ctatgaagcaaacgacaaggggaacgaatacgatgccagaaaggtgagaaaaggctcgcc 492 Query: 488 aatcggtttagacaatagttat 509 |||||||||||||||||||||| Sbjct: 493 aatcggtttagacaatagttat 514 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9473 Number of Sequences: 18737 Number of extensions: 9473 Number of successful extensions: 154 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 153 Number of HSP's gapped (non-prelim): 1 length of query: 509 length of database: 41,270,998 effective HSP length: 17 effective length of query: 492 effective length of database: 40,952,469 effective search space: 20148614748 effective search space used: 20148614748 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946661|AI946661 bs29c09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs29c09 5', mRNA sequence. (471 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,865 Number of Sequences: 18737 Number of extensions: 10865 Number of successful extensions: 222 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 222 Number of HSP's gapped (non-prelim): 0 length of query: 471 length of database: 41,270,998 effective HSP length: 17 effective length of query: 454 effective length of database: 40,952,469 effective search space: 18592420926 effective search space used: 18592420926 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946665|AI946665 bs29d02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs29d02 5', mRNA sequence. (432 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31459-RA feature: mRNA loc=3R:join(15666584..15666808,15666867... 835 0.0 >CG31459-RA feature: mRNA loc=3R:join(15666584..15666808,15666867..15667227, 15667292..15667405, 15667466..15667784);ID=FBan0031459;gene_id=FBgn0051459;g ene_sym=CG31459;sym=CG31459;scaffold=AE003728;len=1019 Length = 1019 Score = 835 bits (421), Expect = 0.0 Identities = 424/425 (99%) Strand = Plus / Plus Query: 8 caaattcgaaagtcacactgaaattggaaagacaaaattggtagtaaagcatttcaacag 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 91 caaattcgaaagtcacactgaaattggaaagacaaaattggtagtaaagcatttcaacag 150 Query: 68 aatgccagtacaggaaatgtttgctgttatggacaacatttaccatggattgcgccgctg 127 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 151 aatgccagtacaggaaatgtttgctattatggacaacatttaccatggattgcgccgctg 210 Query: 128 cttcggacctgaaaatcagattgaacccccaaagtatccagcttacaatacgttgaaaaa 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 211 cttcggacctgaaaatcagattgaacccccaaagtatccagcttacaatacgttgaaaaa 270 Query: 188 acttggtaagcgacgtcgcagagtatgtaaaagcattctcggttcgaaacatatacggag 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 271 acttggtaagcgacgtcgcagagtatgtaaaagcattctcggttcgaaacatatacggag 330 Query: 248 gaatcatttttccaccagcgaagaaagcgtccaaaatttgagtgcctcagaactcaagga 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 331 gaatcatttttccaccagcgaagaaagcgtccaaaatttgagtgcctcagaactcaagga 390 Query: 308 gtattttgcaaggccaaagttaacagctcccaagacggtgagccatgagcccggcataag 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 391 gtattttgcaaggccaaagttaacagctcccaagacggtgagccatgagcccggcataag 450 Query: 368 cccttcgattgacctgatacatcgtcggcgactccaaaaccgcccgctgatgttgaatgc 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 451 cccttcgattgacctgatacatcgtcggcgactccaaaaccgcccgctgatgttgaatgc 510 Query: 428 ctggc 432 ||||| Sbjct: 511 ctggc 515 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7879 Number of Sequences: 18737 Number of extensions: 7879 Number of successful extensions: 485 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 484 Number of HSP's gapped (non-prelim): 1 length of query: 432 length of database: 41,270,998 effective HSP length: 17 effective length of query: 415 effective length of database: 40,952,469 effective search space: 16995274635 effective search space used: 16995274635 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946667|AI946667 bs29d05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs29d05 5', mRNA sequence. (479 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value aret-RC feature: mRNA loc=2L:join(12259807..12260218,12260462..1... 835 0.0 aret-RB feature: mRNA loc=2L:join(12194714..12195001,12229739..1... 835 0.0 aret-RA feature: mRNA loc=2L:join(12259807..12260218,12260462..1... 835 0.0 >aret-RC feature: mRNA loc=2L:join(12259807..12260218,12260462..12260955, 12267708..12267790,12271385..12271433,12287439..12287620, 12287685..12287982,12288059..12288265,12289232..12289267, 12293317..12293466,12299553..12299964,12301247..12301336, 12301397..12301667);ID=FBan0031762;gene_id=FBgn0000114;ge ne_sym=aret;sym=CG31762;scaffold=AE003635;len=2684 Length = 2684 Score = 835 bits (421), Expect = 0.0 Identities = 437/445 (98%) Strand = Plus / Minus Query: 35 atttttataaattttctttgttaaaattagtatgctttacaagcttaaaaaatggctttc 94 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2676 atttttataaattttctttgttaaaattagtatgctttacaagcttaaaaaatggctttc 2617 Query: 95 ttggctatcatacaacatgattgcatattaggttttatacagattttccaatannnnnnn 154 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2616 ttggctatcatacaacatgattgcatattaggttttatacagattttccaatattttttt 2557 Query: 155 nggaattcaaatttacagtttttggaaatttttatgcgacagcagtgggataggcaatct 214 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2556 tggaattcaaatttacagtttttggaaatttttatgcgacagcagtgggataggcaatct 2497 Query: 215 ttagtaggattctcgagactcaagcggatattatttacatatttcagggaccaatgcgtc 274 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2496 ttagtaggattctcgagactcaagcggatattatttacatatttcagggaccaatgcgtc 2437 Query: 275 ttgtaagaacgatttgcataaaactctcaactggcggcttgcatcagctaccacttgaca 334 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2436 ttgtaagaacgatttgcataaaactctcaactggcggcttgcatcagctaccacttgaca 2377 Query: 335 tcgcatttccaaaaatgaaataaatggcgaaactttgcaaagaacattaccataacgttg 394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2376 tcgcatttccaaaaatgaaataaatggcgaaactttgcaaagaacattaccataacgttg 2317 Query: 395 gcattcgcatcatcgtttaaatcttgcaacgcgctctacacgggcaactcttcattcatt 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2316 gcattcgcatcatcgtttaaatcttgcaacgcgctctacacgggcaactcttcattcatt 2257 Query: 455 gactactccatatttcacaaatctc 479 ||||||||||||||||||||||||| Sbjct: 2256 gactactccatatttcacaaatctc 2232 >aret-RB feature: mRNA loc=2L:join(12194714..12195001,12229739..12230651, 12260462..12260955,12267708..12267790,12271385..12271433, 12287439..12287620,12287685..12287982,12288059..12288265, 12293317..12293466,12299553..12299964,12301247..12301336, 12301397..12301672);ID=FBan0031762;gene_id=FBgn0000114;ge ne_sym=aret;sym=CG31762;scaffold=AE003635;len=3442 Length = 3442 Score = 835 bits (421), Expect = 0.0 Identities = 437/445 (98%) Strand = Plus / Minus Query: 35 atttttataaattttctttgttaaaattagtatgctttacaagcttaaaaaatggctttc 94 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3429 atttttataaattttctttgttaaaattagtatgctttacaagcttaaaaaatggctttc 3370 Query: 95 ttggctatcatacaacatgattgcatattaggttttatacagattttccaatannnnnnn 154 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3369 ttggctatcatacaacatgattgcatattaggttttatacagattttccaatattttttt 3310 Query: 155 nggaattcaaatttacagtttttggaaatttttatgcgacagcagtgggataggcaatct 214 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3309 tggaattcaaatttacagtttttggaaatttttatgcgacagcagtgggataggcaatct 3250 Query: 215 ttagtaggattctcgagactcaagcggatattatttacatatttcagggaccaatgcgtc 274 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3249 ttagtaggattctcgagactcaagcggatattatttacatatttcagggaccaatgcgtc 3190 Query: 275 ttgtaagaacgatttgcataaaactctcaactggcggcttgcatcagctaccacttgaca 334 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3189 ttgtaagaacgatttgcataaaactctcaactggcggcttgcatcagctaccacttgaca 3130 Query: 335 tcgcatttccaaaaatgaaataaatggcgaaactttgcaaagaacattaccataacgttg 394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3129 tcgcatttccaaaaatgaaataaatggcgaaactttgcaaagaacattaccataacgttg 3070 Query: 395 gcattcgcatcatcgtttaaatcttgcaacgcgctctacacgggcaactcttcattcatt 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3069 gcattcgcatcatcgtttaaatcttgcaacgcgctctacacgggcaactcttcattcatt 3010 Query: 455 gactactccatatttcacaaatctc 479 ||||||||||||||||||||||||| Sbjct: 3009 gactactccatatttcacaaatctc 2985 >aret-RA feature: mRNA loc=2L:join(12259807..12260218,12260462..12260955, 12267708..12267790,12271385..12271433,12287439..12287620, 12287685..12287982,12288059..12288265,12293317..12293466, 12299553..12299964,12301247..12301336, 12301397..12301667);ID=FBan0031762;gene_id=FBgn0000114;ge ne_sym=aret;sym=CG31762;scaffold=AE003635;len=2648 Length = 2648 Score = 835 bits (421), Expect = 0.0 Identities = 437/445 (98%) Strand = Plus / Minus Query: 35 atttttataaattttctttgttaaaattagtatgctttacaagcttaaaaaatggctttc 94 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2640 atttttataaattttctttgttaaaattagtatgctttacaagcttaaaaaatggctttc 2581 Query: 95 ttggctatcatacaacatgattgcatattaggttttatacagattttccaatannnnnnn 154 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2580 ttggctatcatacaacatgattgcatattaggttttatacagattttccaatattttttt 2521 Query: 155 nggaattcaaatttacagtttttggaaatttttatgcgacagcagtgggataggcaatct 214 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2520 tggaattcaaatttacagtttttggaaatttttatgcgacagcagtgggataggcaatct 2461 Query: 215 ttagtaggattctcgagactcaagcggatattatttacatatttcagggaccaatgcgtc 274 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2460 ttagtaggattctcgagactcaagcggatattatttacatatttcagggaccaatgcgtc 2401 Query: 275 ttgtaagaacgatttgcataaaactctcaactggcggcttgcatcagctaccacttgaca 334 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2400 ttgtaagaacgatttgcataaaactctcaactggcggcttgcatcagctaccacttgaca 2341 Query: 335 tcgcatttccaaaaatgaaataaatggcgaaactttgcaaagaacattaccataacgttg 394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2340 tcgcatttccaaaaatgaaataaatggcgaaactttgcaaagaacattaccataacgttg 2281 Query: 395 gcattcgcatcatcgtttaaatcttgcaacgcgctctacacgggcaactcttcattcatt 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2280 gcattcgcatcatcgtttaaatcttgcaacgcgctctacacgggcaactcttcattcatt 2221 Query: 455 gactactccatatttcacaaatctc 479 ||||||||||||||||||||||||| Sbjct: 2220 gactactccatatttcacaaatctc 2196 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9120 Number of Sequences: 18737 Number of extensions: 9120 Number of successful extensions: 212 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 206 Number of HSP's gapped (non-prelim): 6 length of query: 479 length of database: 41,270,998 effective HSP length: 17 effective length of query: 462 effective length of database: 40,952,469 effective search space: 18920040678 effective search space used: 18920040678 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946674|AI946674 bs29d12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs29d12 5', mRNA sequence. (488 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31639-RA feature: mRNA loc=2L:complement(6146055..6146242,6146... 892 0.0 CG31639-RB feature: mRNA loc=2L:complement(6146055..6146242,6146... 674 0.0 >CG31639-RA feature: mRNA loc=2L:complement(6146055..6146242,6146859..6147097, 6147164..6147303);ID=FBan0031639;gene_id=FBgn0051639;gen e_sym=CG31639;sym=CG31639;scaffold=AE003612;len=567 Length = 567 Score = 892 bits (450), Expect = 0.0 Identities = 459/462 (99%) Strand = Plus / Plus Query: 7 ggagctctctagtcaggccaaaacagcactgaaaatctctgaataaaaattcactatcca 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 29 ggagctctctagtcaggccaaaacagcactgaaaatctctgaataaaaattcactatcca 88 Query: 67 aattccaagttaacaccttaagtttttccgtttctgaatccgtgaagcctagcaacaata 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 89 aattccaagttaacaccttaagtttttccgtttctgaatccgtgaagcctagcaacaata 148 Query: 127 tgtgcggttatggatgcggtccctatggctatggaccttcgggtccttgcggaccatggt 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 149 tgtgcggttatggatgcggtccctatggctatggaccttcgggtccttgcggaccatggt 208 Query: 187 gcggaccctggtgtagtccttgtgccctctcgctaggaccctattcctgctgtggaccca 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 209 gcggaccctggtgtagtccttgtgccctctcgctaggaccctattcctgctgtggaccca 268 Query: 247 gtggatgcggaccaagcggcccagcgtgttggccgtatggcttgtacacctgctaggctt 306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 269 gtggatgcggaccaagcggcccagcgtgttggccgtatggcttgtacacctgctaggctt 328 Query: 307 cagaaggatatcagaaacgtgtgagccattccccaagaaatgtaatacaagctcggacaa 366 ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| Sbjct: 329 cagaaggatatcagaaacgtgtgagccattccccaagaaatttaataccagctcggacaa 388 Query: 367 tggcaattacattggatagcataataaaaatatgttcccgttgttttcattaaagaccat 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 389 tggcaattacattggatagcataataaaaatatgttcccgttgttttcattaaagaccat 448 Query: 427 aataaaatgtggggaaagggagatggaaatcgcagcccctaa 468 ||||||||||||||||||| |||||||||||||||||||||| Sbjct: 449 aataaaatgtggggaaaggcagatggaaatcgcagcccctaa 490 >CG31639-RB feature: mRNA loc=2L:complement(6146055..6146242,6146859..6147110, 6147164..6147303);ID=FBan0031639;gene_id=FBgn0051639;gen e_sym=CG31639;sym=CG31639;scaffold=AE003612;len=580 Length = 580 Score = 674 bits (340), Expect = 0.0 Identities = 349/352 (99%) Strand = Plus / Plus Query: 117 agcaacaatatgtgcggttatggatgcggtccctatggctatggaccttcgggtccttgc 176 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 152 agcaacaatatgtgcggttatggatgcggtccctatggctatggaccttcgggtccttgc 211 Query: 177 ggaccatggtgcggaccctggtgtagtccttgtgccctctcgctaggaccctattcctgc 236 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 212 ggaccatggtgcggaccctggtgtagtccttgtgccctctcgctaggaccctattcctgc 271 Query: 237 tgtggacccagtggatgcggaccaagcggcccagcgtgttggccgtatggcttgtacacc 296 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 272 tgtggacccagtggatgcggaccaagcggcccagcgtgttggccgtatggcttgtacacc 331 Query: 297 tgctaggcttcagaaggatatcagaaacgtgtgagccattccccaagaaatgtaatacaa 356 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | Sbjct: 332 tgctaggcttcagaaggatatcagaaacgtgtgagccattccccaagaaatttaatacca 391 Query: 357 gctcggacaatggcaattacattggatagcataataaaaatatgttcccgttgttttcat 416 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 392 gctcggacaatggcaattacattggatagcataataaaaatatgttcccgttgttttcat 451 Query: 417 taaagaccataataaaatgtggggaaagggagatggaaatcgcagcccctaa 468 ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 452 taaagaccataataaaatgtggggaaaggcagatggaaatcgcagcccctaa 503 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8626 Number of Sequences: 18737 Number of extensions: 8626 Number of successful extensions: 168 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 165 Number of HSP's gapped (non-prelim): 3 length of query: 488 length of database: 41,270,998 effective HSP length: 17 effective length of query: 471 effective length of database: 40,952,469 effective search space: 19288612899 effective search space used: 19288612899 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946685|AI946685 bs29e11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs29e11 5', mRNA sequence. (640 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,263 Number of Sequences: 18737 Number of extensions: 16263 Number of successful extensions: 386 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 386 Number of HSP's gapped (non-prelim): 0 length of query: 640 length of database: 41,270,998 effective HSP length: 17 effective length of query: 623 effective length of database: 40,952,469 effective search space: 25513388187 effective search space used: 25513388187 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946700|AI946700 bs29g03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs29g03 5', mRNA sequence. (389 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8404 Number of Sequences: 18737 Number of extensions: 8404 Number of successful extensions: 757 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 757 Number of HSP's gapped (non-prelim): 0 length of query: 389 length of database: 41,270,998 effective HSP length: 17 effective length of query: 372 effective length of database: 40,952,469 effective search space: 15234318468 effective search space used: 15234318468 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946710|AI946710 bs29h01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs29h01 5', mRNA sequence. (489 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31542-RA feature: mRNA loc=3R:join(1195259..1195314,1195374..1... 763 0.0 >CG31542-RA feature: mRNA loc=3R:join(1195259..1195314, 1195374..1196153);ID=FBan0031542;gene_id=FBgn0051542;gen e_sym=CG31542;sym=CG31542;scaffold=AE003603;len=836 Length = 836 Score = 763 bits (385), Expect = 0.0 Identities = 385/385 (100%) Strand = Plus / Plus Query: 105 tcgtacgcccaccagccgcagcagcagccggacagctgtccctatccgggtccgcggggc 164 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 146 tcgtacgcccaccagccgcagcagcagccggacagctgtccctatccgggtccgcggggc 205 Query: 165 cagggagcaggcgggtgccaggtcaactcgacgcagccgccgggcgatcccgccgcatgc 224 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 206 cagggagcaggcgggtgccaggtcaactcgacgcagccgccgggcgatcccgccgcatgc 265 Query: 225 agcctctaccagagccggggagcccccaccgtggagtgcacgtgcactcagaaccgtagc 284 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 266 agcctctaccagagccggggagcccccaccgtggagtgcacgtgcactcagaaccgtagc 325 Query: 285 cggccacctccgccatccgttcaggcggaccacatcacgtgcagccggggtccgcgggag 344 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 326 cggccacctccgccatccgttcaggcggaccacatcacgtgcagccggggtccgcgggag 385 Query: 345 cagccgcctgccctggagacccgctgcacctgtcgcgagaagcccgccaagacggagtgc 404 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 386 cagccgcctgccctggagacccgctgcacctgtcgcgagaagcccgccaagacggagtgc 445 Query: 405 cactgcgccccgccggtggccccgcctcccaaccaacagcagcagcaggcgatggcccag 464 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 446 cactgcgccccgccggtggccccgcctcccaaccaacagcagcagcaggcgatggcccag 505 Query: 465 cccacctacgccaacgtgacctgtg 489 ||||||||||||||||||||||||| Sbjct: 506 cccacctacgccaacgtgacctgtg 530 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 39,142 Number of Sequences: 18737 Number of extensions: 39142 Number of successful extensions: 3515 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3512 Number of HSP's gapped (non-prelim): 3 length of query: 489 length of database: 41,270,998 effective HSP length: 17 effective length of query: 472 effective length of database: 40,952,469 effective search space: 19329565368 effective search space used: 19329565368 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946712|AI946712 bs29h03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs29h03 5', mRNA sequence. (93 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 0 Number of Sequences: 18737 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 93 length of database: 41,270,998 effective HSP length: 16 effective length of query: 77 effective length of database: 40,971,206 effective search space: 3154782862 effective search space used: 3154782862 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946721|AI946721 bs30a01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs30a01 5', mRNA sequence. (374 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6476 Number of Sequences: 18737 Number of extensions: 6476 Number of successful extensions: 524 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 524 Number of HSP's gapped (non-prelim): 0 length of query: 374 length of database: 41,270,998 effective HSP length: 17 effective length of query: 357 effective length of database: 40,952,469 effective search space: 14620031433 effective search space used: 14620031433 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946728|AI946728 bs30a09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs30a09 5', mRNA sequence. (659 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Ssl-RB feature: mRNA loc=2R:complement(19542808..19542826,195429... 1277 0.0 Ssl-RA feature: mRNA loc=2R:complement(19542811..19543110,195431... 1277 0.0 >Ssl-RB feature: mRNA loc=2R:complement(19542808..19542826,19542916..19543110, 19543171..19543692, 19543750..19543799);ID=FBan0013591;gene_id=FBgn0015300;g ene_sym=Ssl;sym=CG13591;scaffold=AE003464;len=786 Length = 786 Score = 1277 bits (644), Expect = 0.0 Identities = 647/648 (99%) Strand = Plus / Plus Query: 8 attatattttattcgagtgagcatgtcgtgtcccaggagcatcgagataccagatggcag 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18 attatattttattcgagtgagcatgtcgtgtcccaggagcatcgagataccagatggcag 77 Query: 68 ttggatcgattggttcctgggaatcaagggccacgaattctcctgccgggtgcccaatga 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 78 ttggatcgattggttcctgggaatcaagggccacgaattctcctgccgggtgcccaatga 137 Query: 128 atacatccaggacaagttcaatctgacgggcctggagttcgatagccagacactggaggt 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 138 atacatccaggacaagttcaatctgacgggcctggagttcgatagccagacactggaggt 197 Query: 188 agtcttagatccggagttcgacaacgaggactgggactgcgccgaagagaagaagctgta 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 198 agtcttagatccggagttcgacaacgaggactgggactgcgccgaagagaagaagctgta 257 Query: 248 tggcatgatccatgcacggtacatcgtttcgccgcgtggcattgaagatatgcgattaaa 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 258 tggcatgatccatgcacggtacatcgtttcgccgcgtggcattgaagatatgcgattaaa 317 Query: 308 gtacgaaaggggggacttcggatcgtgtccgagagtcttttgtaagaggcagaaagtcct 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 318 gtacgaaaggggggacttcggatcgtgtccgagagtcttttgtaagaggcagaaagtcct 377 Query: 368 gccagtgggccttcacgacgtgtgggacaaggcccaagttaagatctattgccctagctg 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 378 gccagtgggccttcacgacgtgtgggacaaggcccaagttaagatctattgccctagctg 437 Query: 428 taacaacgtctacatcccgctaccccacattggaatgctggacggagccatgttcgggac 487 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 438 taacaacgtctacatcccgctaccccacaatggaatgctggacggagccatgttcgggac 497 Query: 488 cagcttcccgcatatgttctttatgcagctgccaagcttgataccctctccgcccgtgga 547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 498 cagcttcccgcatatgttctttatgcagctgccaagcttgataccctctccgcccgtgga 557 Query: 548 gaagtacatcccccgtatctatggcttccagttgcacaagaaggccctgatgccgcccga 607 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 558 gaagtacatcccccgtatctatggcttccagttgcacaagaaggccctgatgccgcccga 617 Query: 608 atcagcagagtccccgccaataaaggtcgaatcctcggtcagcaagtc 655 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 618 atcagcagagtccccgccaataaaggtcgaatcctcggtcagcaagtc 665 >Ssl-RA feature: mRNA loc=2R:complement(19542811..19543110,19543171..19543692, 19543750..19543799);ID=FBan0013591;gene_id=FBgn0015300;g ene_sym=Ssl;sym=CG13591;scaffold=AE003464;len=872 Length = 872 Score = 1277 bits (644), Expect = 0.0 Identities = 647/648 (99%) Strand = Plus / Plus Query: 8 attatattttattcgagtgagcatgtcgtgtcccaggagcatcgagataccagatggcag 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18 attatattttattcgagtgagcatgtcgtgtcccaggagcatcgagataccagatggcag 77 Query: 68 ttggatcgattggttcctgggaatcaagggccacgaattctcctgccgggtgcccaatga 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 78 ttggatcgattggttcctgggaatcaagggccacgaattctcctgccgggtgcccaatga 137 Query: 128 atacatccaggacaagttcaatctgacgggcctggagttcgatagccagacactggaggt 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 138 atacatccaggacaagttcaatctgacgggcctggagttcgatagccagacactggaggt 197 Query: 188 agtcttagatccggagttcgacaacgaggactgggactgcgccgaagagaagaagctgta 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 198 agtcttagatccggagttcgacaacgaggactgggactgcgccgaagagaagaagctgta 257 Query: 248 tggcatgatccatgcacggtacatcgtttcgccgcgtggcattgaagatatgcgattaaa 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 258 tggcatgatccatgcacggtacatcgtttcgccgcgtggcattgaagatatgcgattaaa 317 Query: 308 gtacgaaaggggggacttcggatcgtgtccgagagtcttttgtaagaggcagaaagtcct 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 318 gtacgaaaggggggacttcggatcgtgtccgagagtcttttgtaagaggcagaaagtcct 377 Query: 368 gccagtgggccttcacgacgtgtgggacaaggcccaagttaagatctattgccctagctg 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 378 gccagtgggccttcacgacgtgtgggacaaggcccaagttaagatctattgccctagctg 437 Query: 428 taacaacgtctacatcccgctaccccacattggaatgctggacggagccatgttcgggac 487 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 438 taacaacgtctacatcccgctaccccacaatggaatgctggacggagccatgttcgggac 497 Query: 488 cagcttcccgcatatgttctttatgcagctgccaagcttgataccctctccgcccgtgga 547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 498 cagcttcccgcatatgttctttatgcagctgccaagcttgataccctctccgcccgtgga 557 Query: 548 gaagtacatcccccgtatctatggcttccagttgcacaagaaggccctgatgccgcccga 607 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 558 gaagtacatcccccgtatctatggcttccagttgcacaagaaggccctgatgccgcccga 617 Query: 608 atcagcagagtccccgccaataaaggtcgaatcctcggtcagcaagtc 655 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 618 atcagcagagtccccgccaataaaggtcgaatcctcggtcagcaagtc 665 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,081 Number of Sequences: 18737 Number of extensions: 13081 Number of successful extensions: 323 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 321 Number of HSP's gapped (non-prelim): 2 length of query: 659 length of database: 41,270,998 effective HSP length: 17 effective length of query: 642 effective length of database: 40,952,469 effective search space: 26291485098 effective search space used: 26291485098 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946732|AI946732 bs30b01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs30b01 5', mRNA sequence. (743 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value BEST:GH11908-RA feature: mRNA loc=2R:join(16846975..16847117,168... 1110 0.0 BEST:GH11908-RB feature: mRNA loc=2R:join(16846975..16847117,168... 1072 0.0 >BEST:GH11908-RA feature: mRNA loc=2R:join(16846975..16847117, 16847173..16847892);ID=FBan0009284;gene_id=FBgn0046297;g ene_sym=BEST:GH11908;sym=CG9284;scaffold=AE003455;len=86 3 Length = 863 Score = 1110 bits (560), Expect = 0.0 Identities = 572/575 (99%), Gaps = 1/575 (0%) Strand = Plus / Minus Query: 169 tttggggtatccaagctttggggtatccaagggtagggtatccaagggtagggtatccaa 228 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 676 tttggggtatccaagctttggggtatccaagggtagggtatccaagggtagggtatccaa 617 Query: 229 gtgtatggtatccaagtgtagggcatccaagtgaagggtatccaactatagggtaccaaa 288 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 616 gtgtatggtatccaagtgtagggcatccaagtgaagggtatccaactatagggtaccaaa 557 Query: 289 ttatagggtaccaaggtatagggtaccaaagtataggttacccagtgtaggatatcccag 348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 556 ttatagggtaccaaggtatagggtaccaaagtataggttacccagtgtaggatatcccag 497 Query: 349 tgttgggtatcccagcatatgagagctattataatctgaatccaataatagcttcccaaa 408 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 496 tgttgggtatcccagcatatgagagctattataatctgaatccaataatagct-cccaaa 438 Query: 409 aatgtgttcatcgaaaagttaatttttgcagtggccaggattagcgagttttagagcaac 468 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 437 aatgtgttcatcgaaaagttaatttttgcagtggccaggattagcgagttttagagcaac 378 Query: 469 gcgatttcctaaccaccgtggtgatccaaaaatacacggatagccttatgtcctctgctc 528 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 377 gcgatttcctaaccaccgtggtgatccaaaaatacacggatagccttatgtcctctgctc 318 Query: 529 gtttctctgacgcctcctctggcagtggaaacaaccgcagttgcggccagatgacaagga 588 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 317 gtttctctgacgcctcctctggcagtggaaacaaccgcagttgcggccagatgacaagga 258 Query: 589 cttacgccgtccaccgcaccactaccattggaggacatcgtttttgnggcgtctttggta 648 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 257 cttacgccgtccaccgcaccactaccattggaggacatcgtttttggggcgtctttggta 198 Query: 649 ttcctcgatgatgcactgatctcgttcgaattcatggtgaaacatggcagcgacttgtcc 708 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 197 ttcctcgatgatgcactgatctcgttcgaattcatggtgaaacatggcagcgacttgtcc 138 Query: 709 aacaaaaacttaaaacacaaaatttcgaacggtta 743 |||||||||||||| |||||||||||||||||||| Sbjct: 137 aacaaaaacttaaagcacaaaatttcgaacggtta 103 Score = 476 bits (240), Expect = e-133 Identities = 304/324 (93%), Gaps = 1/324 (0%) Strand = Plus / Minus Query: 8 attaaagtctttaattaatcaacgtagattgacgttttaaataatctattcattcttgag 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 853 attaaagtctttaattaatcaacgtagattgacgttttaaataatctattcattcttgag 794 Query: 68 tttgggaacagccgtcctaataacagtcaaatatggggtatccaagttaatcctagaaac 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 793 tttgggaacagccgtcctaataacagtcaaatatggggtatccaagttaatcctagaaac 734 Query: 128 ctatcctatatatttcgaatcctagtcaatcgttatccatatttggggtatccaagcttt 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 733 ctatcctatatatttcgaatcctagtcaatcgttatccatatttggggtatccaagcttt 674 Query: 188 ggggtatccaag-ggtagggtatccaagggtagggtatccaagtgtatggtatccaagtg 246 |||||||||||| | |||||||||||||||||||||||||| ||| |||||||||||| Sbjct: 673 ggggtatccaagctttggggtatccaagggtagggtatccaagggtagggtatccaagtg 614 Query: 247 tagggcatccaagtgaagggtatccaactatagggtaccaaattatagggtaccaaggta 306 || || ||||||||| |||| |||||| | |||||| | || ||||||||||||| || Sbjct: 613 tatggtatccaagtgtagggcatccaagtgaagggtatccaactatagggtaccaaatta 554 Query: 307 tagggtaccaaagtataggttacc 330 ||||||||||| ||||||| |||| Sbjct: 553 tagggtaccaaggtatagggtacc 530 >BEST:GH11908-RB feature: mRNA loc=2R:join(16846975..16847117, 16847166..16847892);ID=FBan0009284;gene_id=FBgn0046297;g ene_sym=BEST:GH11908;sym=CG9284;scaffold=AE003455;len=87 0 Length = 870 Score = 1072 bits (541), Expect = 0.0 Identities = 572/582 (98%), Gaps = 8/582 (1%) Strand = Plus / Minus Query: 169 tttggggtatccaagctttggggtatccaagggtagggtatccaagggtagggtatccaa 228 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 683 tttggggtatccaagctttggggtatccaagggtagggtatccaagggtagggtatccaa 624 Query: 229 gtgtatggtatccaagtgtagggcatccaagtgaagggtatccaactatagggtaccaaa 288 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 623 gtgtatggtatccaagtgtagggcatccaagtgaagggtatccaactatagggtaccaaa 564 Query: 289 ttatagggtaccaaggtatagggtaccaaagtataggttacccagtgtaggatatcccag 348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 563 ttatagggtaccaaggtatagggtaccaaagtataggttacccagtgtaggatatcccag 504 Query: 349 tgttgggtatcccagcatatgagagctattataatctgaatccaataatagcttcccaaa 408 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 503 tgttgggtatcccagcatatgagagctattataatctgaatccaataatagct-cccaaa 445 Query: 409 aatgtgttcatcgaaaagttaatttttgcagtggccaggattagcgagttttagagcaac 468 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 444 aatgtgttcatcgaaaagttaatttttgcagtggccaggattagcgagttttagagcaac 385 Query: 469 gcgatttcctaaccaccgtggtgatccaaaaatacacggatagccttatgtcctctgctc 528 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 384 gcgatttcctaaccaccgtggtgatccaaaaatacacggatagccttatgtcctctgctc 325 Query: 529 gtttctctgacgcctcctctggcagtggaaacaaccgcagttgcggccagatgacaagga 588 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 324 gtttctctgacgcctcctctggcagtggaaacaaccgcagttgcggccagatgacaagga 265 Query: 589 cttacgccgtccaccgcaccactaccattggaggacatcgtttttgnggcgtctttggta 648 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 264 cttacgccgtccaccgcaccactaccattggaggacatcgtttttggggcgtctttggta 205 Query: 649 ttcctcgatgatgcactgatctcgttcgaattcatggtgaaacatggcagcgac------ 702 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 204 ttcctcgatgatgcactgatctcgttcgaattcatggtgaaacatggcagcgacctgcaa 145 Query: 703 -ttgtccaacaaaaacttaaaacacaaaatttcgaacggtta 743 |||||||||||||||||||| |||||||||||||||||||| Sbjct: 144 attgtccaacaaaaacttaaagcacaaaatttcgaacggtta 103 Score = 476 bits (240), Expect = e-133 Identities = 304/324 (93%), Gaps = 1/324 (0%) Strand = Plus / Minus Query: 8 attaaagtctttaattaatcaacgtagattgacgttttaaataatctattcattcttgag 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 860 attaaagtctttaattaatcaacgtagattgacgttttaaataatctattcattcttgag 801 Query: 68 tttgggaacagccgtcctaataacagtcaaatatggggtatccaagttaatcctagaaac 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 800 tttgggaacagccgtcctaataacagtcaaatatggggtatccaagttaatcctagaaac 741 Query: 128 ctatcctatatatttcgaatcctagtcaatcgttatccatatttggggtatccaagcttt 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 740 ctatcctatatatttcgaatcctagtcaatcgttatccatatttggggtatccaagcttt 681 Query: 188 ggggtatccaag-ggtagggtatccaagggtagggtatccaagtgtatggtatccaagtg 246 |||||||||||| | |||||||||||||||||||||||||| ||| |||||||||||| Sbjct: 680 ggggtatccaagctttggggtatccaagggtagggtatccaagggtagggtatccaagtg 621 Query: 247 tagggcatccaagtgaagggtatccaactatagggtaccaaattatagggtaccaaggta 306 || || ||||||||| |||| |||||| | |||||| | || ||||||||||||| || Sbjct: 620 tatggtatccaagtgtagggcatccaagtgaagggtatccaactatagggtaccaaatta 561 Query: 307 tagggtaccaaagtataggttacc 330 ||||||||||| ||||||| |||| Sbjct: 560 tagggtaccaaggtatagggtacc 537 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,007 Number of Sequences: 18737 Number of extensions: 13007 Number of successful extensions: 293 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 266 Number of HSP's gapped (non-prelim): 5 length of query: 743 length of database: 41,270,998 effective HSP length: 17 effective length of query: 726 effective length of database: 40,952,469 effective search space: 29731492494 effective search space used: 29731492494 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946744|AI946744 bs30c01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs30c01 5', mRNA sequence. (683 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32652-RA feature: mRNA loc=X:complement(12141720..12141970,121... 809 0.0 >CG32652-RA feature: mRNA loc=X:complement(12141720..12141970,12142025..12142249, 12142304..12142408);ID=FBan0032652;gene_id=FBgn0052652;g ene_sym=CG32652;sym=CG32652;scaffold=AE003489;len=581 Length = 581 Score = 809 bits (408), Expect = 0.0 Identities = 429/435 (98%), Gaps = 2/435 (0%) Strand = Plus / Plus Query: 249 attcccatcccatcccaaattatttaatgcgcttatccaaaatgcaaactaatgatgatc 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 attcccatcccatcccaaattatttaatgcgcttatccaaaatgcaaactaatgatgatc 60 Query: 309 gttccgcctacactgccttaattaacagtctgaacaagctaggatagttgaaatggtgtt 368 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 61 gttccgcctacactgccttaattaa--gtctgaacaagctaggatagttgaaatggtgtt 118 Query: 369 caattcgatggtaccagtcccgttggacgagagggatgcatcggtttggatataaatgtt 428 |||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||| Sbjct: 119 caattcgatggtaccagtcccgttggacgagaggattgcatcgttttggatacaaatgtt 178 Query: 429 gcgcttacaatcaatgcaagccatagaagcctactcttcatacactatgttaataagcca 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 179 gcgcttacaatcaatgcaagccatagaagcctactcttcatacactatgttaataagcca 238 Query: 489 tcttatgatcagttggtttatctcaaatgcaaactactaaagatcgttccgcctacactg 548 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 239 tcttatgatcagttggtttatctcaaatgcaaactactaaagatcgttccgcctacactg 298 Query: 549 ccttaattaacagtctgaacaagcaaggatagatgaaatggttttcaattcgatggcacc 608 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 299 ccttaattaacagtctgaacaagcaaggatagatgaaatggttttcaattcgatggcacc 358 Query: 609 ggtcccgttggacgagaggattgcatcggtttggatataaatgttgctctaatattcaat 668 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 359 ggtcccgttggacgagaggattgcatcggtttggatataaatgttgctctaatattcaat 418 Query: 669 gctaacattttgctg 683 ||||||||||||||| Sbjct: 419 gctaacattttgctg 433 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,687 Number of Sequences: 18737 Number of extensions: 13687 Number of successful extensions: 321 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 316 Number of HSP's gapped (non-prelim): 1 length of query: 683 length of database: 41,270,998 effective HSP length: 17 effective length of query: 666 effective length of database: 40,952,469 effective search space: 27274344354 effective search space used: 27274344354 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946745|AI946745 bs30c02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs30c02 5', mRNA sequence. (649 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31709-RA feature: mRNA loc=2L:complement(9570765..9571260,9571... 1241 0.0 >CG31709-RA feature: mRNA loc=2L:complement(9570765..9571260,9571322..9571676, 9571740..9571867);ID=FBan0031709;gene_id=FBgn0051709;gen e_sym=CG31709;sym=CG31709;scaffold=AE003625;len=979 Length = 979 Score = 1241 bits (626), Expect = 0.0 Identities = 638/642 (99%) Strand = Plus / Plus Query: 8 aggatatacaactagggattttcctcaacaacaagtttaaattcgttagtcaaccaaaat 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6 aggatatacaactagggattttcctcaacaacaagtttaaattcgttagtcaaccaaaat 65 Query: 68 cgtgtaacaatgggtgcttgtcgccctagaaaatgtagtgcaaataaccgaactatggca 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 66 cgtgtaacaatgggtgcttgtcgccctagaaaatgtagtgcaaataaccgaactatggca 125 Query: 128 attcgtcgccgtagagctctagttaacttgctatttttgcgccgtcatttgattggacag 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 126 attcgtcgccgtagagctctagttaacttgctatttttgcgccgtcatttgattggacag 185 Query: 188 gcacttggaattacgaatcgggaaactccagaccttagggtaaaatcgcggcgacgcaat 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 186 gcacttggaattacgaatcgggaaactccagaccttagggtaaaatcgcggcgacgcaat 245 Query: 248 cgtagaaggagaatgcaattcagagtccgtacaccaagtgataatgcactgcgctcagta 307 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 246 cgtagaaggagaatgcaattcagagtccgtacaccaagtgataatgcaatgcgctcagta 305 Query: 308 aggcatcatggacagaatccaatcagcccaggatcacggctacaacgaaacaatccactt 367 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 306 aggcatcatggacagaatccaatcagcccaggatcacggctacaacgaaataatccactt 365 Query: 368 tggggacacgccgacattataaccacagatacagcgtttgaagctttaaatggacttact 427 ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| Sbjct: 366 tggggacacgccgacattataaccacagatagagcgttggaagctttaaatggacttact 425 Query: 428 acagggaacagggaaccaaatgcattgtcagtaatggtgcgatataccaatgggcggtat 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 426 acagggaacagggaaccaaatgcattgtcagtaatggtgcgatataccaatgggcggtat 485 Query: 488 tatttaagcttagagccaagtggaaatcagcaaaatgagaacaatatcgttcaaaatccc 547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 486 tatttaagcttagagccaagtggaaatcagcaaaatgagaacaatatcgttcaaaatccc 545 Query: 548 agtcggaatggtcagaaccaacaggtcgaagacggcaatgatcggaatcttcaaccggca 607 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 546 agtcggaatggtcagaaccaacaggtcgaagacggcaatgatcggaatcttcaaccggca 605 Query: 608 gctcaggcagctgatgatgataacaatatgacaaattcaaat 649 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 606 gctcaggcagctgatgatgataacaatatgacaaattcaaat 647 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,094 Number of Sequences: 18737 Number of extensions: 12094 Number of successful extensions: 262 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 261 Number of HSP's gapped (non-prelim): 1 length of query: 649 length of database: 41,270,998 effective HSP length: 17 effective length of query: 632 effective length of database: 40,952,469 effective search space: 25881960408 effective search space used: 25881960408 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946763|AI946763 bs30d08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs30d08 5', mRNA sequence. (713 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31897-RA feature: mRNA loc=2L:8434874..8437891;ID=FBan0031897;... 1384 0.0 >CG31897-RA feature: mRNA loc=2L:8434874..8437891;ID=FBan0031897;gene_id=FBgn005189 7;gene_sym=CG31897;sym=CG31897;scaffold=AE003621;len=3018 Length = 3018 Score = 1384 bits (698), Expect = 0.0 Identities = 704/706 (99%) Strand = Plus / Plus Query: 8 aacccacgggacatagtttagttttaaataaaaaatataaatccgatgaaagcctagcca 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1538 aacccacgggacatagtttagttttaaataaaaaatataaatccgatgaaagcctagcca 1597 Query: 68 agcagatgtctatgtcaaaatatttcgacataaaaaccaacttgaatcctgtaagcccat 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1598 agcagatgtctatgtcaaaatatttcgacataaaaaccaacttgaatcctgtaagcccat 1657 Query: 128 ctcatttatcacaaacaagctccgtttcagtaggaaaactaaaagtaaattccgcacttt 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1658 ctcatttatcacaaacaagctccgtttcagtaggaaaactaaaagtaaattccgcacttt 1717 Query: 188 tgccaaaaccctctgtgagatcactggatggcgtatcccaaccacccttgtcatcaatgg 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1718 tgccaaaaccctctgtgagatcactggatggcgtatcccaaccacccttgtcatcaatgg 1777 Query: 248 ctacaacgattatcaatcttttgttcgaagataagccagttgcttcggataaaccaagaa 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1778 ctacaacgattatcaatcttttgttcgaagataagccagttgcttcggataaaccaagaa 1837 Query: 308 cacatcaaaaaacaatagaccttacaaaaatgtcattaaacacttttttgggaacgatat 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1838 cacatcaaaaaacaatagaccttacaaaaatgtcattaaacacttttttgggaacgatat 1897 Query: 368 ctaggatgaagccctcggatcaggcaaatgccgtgtggaacgatttgcaggggaaatata 427 ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct: 1898 ctaggatgaagccctcggatcaggcaaatgcggtttggaacgatttgcaggggaaatata 1957 Query: 428 aagagtggttgtcgaatgttataatgcccgaggatgctcagaaatgcaagaaaattctca 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1958 aagagtggttgtcgaatgttataatgcccgaggatgctcagaaatgcaagaaaattctca 2017 Query: 488 aatggcgctatattcacaatatgcaaaaggtcttacacaatcatgttaagcagtttaaga 547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2018 aatggcgctatattcacaatatgcaaaaggtcttacacaatcatgttaagcagtttaaga 2077 Query: 548 tcgattatgacggtgggcgatcagaaaccggttccagaaagtctataatgtcaagtaggg 607 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2078 tcgattatgacggtgggcgatcagaaaccggttccagaaagtctataatgtcaagtaggg 2137 Query: 608 catttcgatccagttacatagtaccaactaactctggatctctaggcgttcccaaaaaga 667 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2138 catttcgatccagttacatagtaccaactaactctggatctctaggcgttcccaaaaaga 2197 Query: 668 tatctagcacagacatttccccgatcagacgaatgcatgacaccct 713 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2198 tatctagcacagacatttccccgatcagacgaatgcatgacaccct 2243 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,067 Number of Sequences: 18737 Number of extensions: 14067 Number of successful extensions: 253 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 252 Number of HSP's gapped (non-prelim): 1 length of query: 713 length of database: 41,270,998 effective HSP length: 17 effective length of query: 696 effective length of database: 40,952,469 effective search space: 28502918424 effective search space used: 28502918424 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946775|AI946775 bs30e09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs30e09 5', mRNA sequence. (525 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8637 Number of Sequences: 18737 Number of extensions: 8637 Number of successful extensions: 170 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 170 Number of HSP's gapped (non-prelim): 0 length of query: 525 length of database: 41,270,998 effective HSP length: 17 effective length of query: 508 effective length of database: 40,952,469 effective search space: 20803854252 effective search space used: 20803854252 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946783|AI946783 bs30f05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs30f05 5', mRNA sequence. (673 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Gr97a-RA feature: mRNA loc=3R:complement(22780231..22780464,2278... 1249 0.0 >Gr97a-RA feature: mRNA loc=3R:complement(22780231..22780464, 22780522..22781559);ID=FBan0033083;gene_id=FBgn0041224;ge ne_sym=Gr97a;sym=CG33083;scaffold=AE003758;len=1272 Length = 1272 Score = 1249 bits (630), Expect = 0.0 Identities = 663/674 (98%), Gaps = 5/674 (0%) Strand = Plus / Minus Query: 5 cagcaggcttccaatggctgacgagaataccttattgaccagcgaggtattcagttccag 64 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1227 cagcaggcttccaatagctgacgagaataccttattgaccagcgaggtattcagttccag 1168 Query: 65 gaggcccaatggcataagcttgtagttgatggtgacgacctgcagccagaaggcattcac 124 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1167 gaggcccaatggcataagcttgtagttgatggtgacgacctgcagccagaaagcattcac 1108 Query: 125 cacttgcttgaaacgggcatcggcgtgctgcaaatcgaatcgctgcaacagttctccagt 184 |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| Sbjct: 1107 cacttgcttgaaacgggcatcggcgtgctgcagatcgaatcgctgcaatagttctccagt 1048 Query: 185 tctcctgg-----gtttggttacttatccgagccaccatgacgagttccaggaagggaac 239 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1047 tctcctggtgagggtttggttacttatccgagccaccatgacgagttccaggaagggaac 988 Query: 240 agccagaaatacgaccagaacaatggccagaaagagatcgaaaggctcctcgttgatgta 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 987 agccagaaatacgaccagaacaatggccagaaagagatcgaaaggctcctcgttgatgta 928 Query: 300 gtgatccgcaatggccagatactgattgtagcatcccatggtgataccgagaaggttcat 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 927 gtgatccgcaatggccagatactgattgtagcatcccatggtgataccgagaaggttcat 868 Query: 360 tagcatcgatagcaccatggaccagtccgtgaaccgaaagtaattctttgagcggctggc 419 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 867 tagcatcgatagcaccatggaccagtccgtgaaccgaaggtaattctttgagcggctggc 808 Query: 420 agtgaagccatatttcctagccaactcatccagaagatcggctaactcgcagaagcgacg 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 807 agtgaagccatatttcctagccaactcatccagaagatcggctaactcgcagaagcgacg 748 Query: 480 catccggtagtagggcttatggagattcatctggacaggtgactgcagcatattggcctc 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 747 catccggtagtagggcttatggagattcatctggacaggtgactgcagcatattggcctc 688 Query: 540 cttgacaatgccgtgcagcttacgattcaccgcggcaaatatcaaatttgcaagtaccag 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 687 cttgacaatgccgtgcagcttacgattcaccgcggcaaatatcaaatttgcaagtaccag 628 Query: 600 gccgccgaaaaagcaattatttatctgattggaaacaatcagtggcaacatggtcttcgt 659 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 627 gccgccgaagaagcaattatttatctgattggaaacaatcagtggcaacatggtcttcgt 568 Query: 660 ggtcgttacactcg 673 |||||||||||||| Sbjct: 567 ggtcgttacactcg 554 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,254 Number of Sequences: 18737 Number of extensions: 16254 Number of successful extensions: 382 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 380 Number of HSP's gapped (non-prelim): 1 length of query: 673 length of database: 41,270,998 effective HSP length: 17 effective length of query: 656 effective length of database: 40,952,469 effective search space: 26864819664 effective search space used: 26864819664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946791|AI946791 bs30g01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs30g01 5', mRNA sequence. (668 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG13243-RA feature: mRNA loc=2L:join(15830757..15830784,15830837... 930 0.0 >CG13243-RA feature: mRNA loc=2L:join(15830757..15830784, 15830837..15832148);ID=FBan0013243;gene_id=FBgn0028903;ge ne_sym=CG13243;sym=CG13243;scaffold=AE003649;len=1340 Length = 1340 Score = 930 bits (469), Expect = 0.0 Identities = 475/477 (99%) Strand = Plus / Minus Query: 62 taaataggcccttcccgaatgtatttataggattatctggccaaagatcacttgaaattt 121 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1334 taaataggcccatcccgaatgtatttataggattatctggccaaagatcacttgaaattt 1275 Query: 122 tgaaaacactcattacctaattaagaattaagctatccctttgacatattctggaaaaac 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1274 tgaaaacactcattacctaattaagaattaagctatccctttgacatattctggaaaaac 1215 Query: 182 ataatggagaactctaggacattgctgggcttgtaccgcaacagattgagcacataatcc 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1214 ataatggagaactctaggacattgctgggcttgtaccgcaacagattgagcacataatcc 1155 Query: 242 tgcataaaatcggccagctgtgaattgctgctcagatagctggtggcgttctcgtaattg 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1154 tgcataaaatcggccagctgtgaattgctgctcagatagctggtggcgttctcgtaattg 1095 Query: 302 agggctttgagctcccggaacttgcgagaaagctgttcgttttggcgccacattagttcc 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1094 agggctttgagctcccggaacttgcgagaaagctgttcgttttggcgccacattagttcc 1035 Query: 362 aatttgggtaggataggttcctttctcttcggtggcatgcaagcggcatgcaaaaggtag 421 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1034 aatttgggtaggataggttcctttctcttcggtggcatgcaggcggcatgcaaaaggtag 975 Query: 422 ttatagccacgccaataatgcagaacaatccggccctcaggagtcatgaaggtctcggcc 481 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 974 ttatagccacgccaataatgcagaacaatccggccctcaggagtcatgaaggtctcggcc 915 Query: 482 acatcctggagctcatcgttgaaacattgctgggtgaagatgtgcacgacattcttg 538 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 914 acatcctggagctcatcgttgaaacattgctgggtgaagatgtgcacgacattcttg 858 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,292 Number of Sequences: 18737 Number of extensions: 14292 Number of successful extensions: 339 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 337 Number of HSP's gapped (non-prelim): 2 length of query: 668 length of database: 41,270,998 effective HSP length: 17 effective length of query: 651 effective length of database: 40,952,469 effective search space: 26660057319 effective search space used: 26660057319 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946792|AI946792 bs30g02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs30g02 5', mRNA sequence. (645 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,697 Number of Sequences: 18737 Number of extensions: 10697 Number of successful extensions: 190 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 190 Number of HSP's gapped (non-prelim): 0 length of query: 645 length of database: 41,270,998 effective HSP length: 17 effective length of query: 628 effective length of database: 40,952,469 effective search space: 25718150532 effective search space used: 25718150532 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946799|AI946799 bs30g09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs30g09 5', mRNA sequence. (652 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31281-RA feature: mRNA loc=3R:join(18782679..18782938,18783007... 1144 0.0 >CG31281-RA feature: mRNA loc=3R:join(18782679..18782938, 18783007..18783839);ID=FBan0031281;gene_id=FBgn0051281;g ene_sym=CG31281;sym=CG31281;scaffold=AE003741;len=1093 Length = 1093 Score = 1144 bits (577), Expect = 0.0 Identities = 589/593 (99%) Strand = Plus / Plus Query: 60 ataaggaatcatacttttacatttattatataaccaaatctcaagatttctgcaatgggt 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33 ataaggaatcatacttttacatttattatataaccaaatctcaagatttctgcaatgggt 92 Query: 120 agcgttttaagtagatcagatcagcctagagattctgtcgcctacagaaacttcctgacg 179 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 93 agcgttttaagtagatcagatcagcctagagattctgtcgcctacagaaacttcctgaca 152 Query: 180 gtctacaggaatcagcacaaacaaatgagttccaatgatgcacttttgagtgcatcacgt 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 153 gtctacaggaatcagcacaaacaaatgagttccaatgatgcacttttgagtgcatcacgt 212 Query: 240 gaatggggaactttatcgcaggctcagcggaatcgatatgctaacatgaaggactccccc 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 213 gaatggggaactttatcgcaggctcagcggaatcgatatgctaacatgaaggactccccc 272 Query: 300 aagcggggcacaaaaaacataacggagaatgcggctgctcgtagaaagattactaaaaag 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 273 aagcggggcacaaaaaacataacggagaatgcggctgctcgtagaaagattactaaaaag 332 Query: 360 aattcccggtcgaagagaatttctcagaggcggattcaagataaggggtctgcttacaag 419 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| Sbjct: 333 aattcccggtcgaagagaatttctcagcggcggattcaagataaggggtctgcttataag 392 Query: 420 ccgctaaccctcaacagatcttacgtaatacggaagagtttggttccctcaagaggcttt 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 393 ccgctaaccctcaacagatcttacgtaatacggaagagtttggttccctcaagaggcttt 452 Query: 480 ctaaacttagtgcagttctttcaagagatccatagcgaaatgccaagatcgttggccgtg 539 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 453 ctaaacttagtgcagttcttccaagagatccatagcgaaatgccaagatcgttggccgtg 512 Query: 540 aaagaggctgttagttcctggtgcgctatgaatgcggatcagcgtggcattttcatatca 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 513 aaagaggctgttagttcctggtgcgctatgaatgcggatcagcgtggcattttcatatca 572 Query: 600 gacttatagtcatcatgtcacccacttcactcaatcaatgccccccacgcatg 652 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 573 gacttatagtcatcatgtcacccacttcactcaatcaatgccccccacgcatg 625 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,430 Number of Sequences: 18737 Number of extensions: 10430 Number of successful extensions: 177 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 176 Number of HSP's gapped (non-prelim): 1 length of query: 652 length of database: 41,270,998 effective HSP length: 17 effective length of query: 635 effective length of database: 40,952,469 effective search space: 26004817815 effective search space used: 26004817815 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946806|AI946806 bs30h04.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs30h04 5', mRNA sequence. (639 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,856 Number of Sequences: 18737 Number of extensions: 14856 Number of successful extensions: 402 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 402 Number of HSP's gapped (non-prelim): 0 length of query: 639 length of database: 41,270,998 effective HSP length: 17 effective length of query: 622 effective length of database: 40,952,469 effective search space: 25472435718 effective search space used: 25472435718 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946808|AI946808 bs30h06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs30h06 5', mRNA sequence. (654 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG2702-RA feature: mRNA loc=3R:join(3839561..3840036,3840148..38... 1114 0.0 >CG2702-RA feature: mRNA loc=3R:join(3839561..3840036,3840148..3840703, 3840764..3842345);ID=FBan0002702;gene_id=FBgn0037540;gene _sym=CG2702;sym=CG2702;scaffold=AE003677;len=2614 Length = 2614 Score = 1114 bits (562), Expect = 0.0 Identities = 568/570 (99%) Strand = Plus / Minus Query: 8 cagattataactaaacttaaagaagttgcagaactctatatcaactttcgaaagtcttga 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1601 cagattataactaaacttaaagaagttgcagaactctatatcaactttcgaaagtcttga 1542 Query: 68 gaaactctctgcctgtcgctcgatcctagcctttttcgatttgggaccgcgcacccgagt 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1541 gaaactctctgcctgtcgctcgatcctagcctttttcgatttgggaccgcgcacccgagt 1482 Query: 128 tcctttcgggcggtcatcattaactaatgactctgggtcctcttgccactcttgcaaacg 187 |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1481 tcctttcggggggttatcattaactaatgactctgggtcctcttgccactcttgcaaacg 1422 Query: 188 ctgcgcccagttatcagagttaaccaaggacaccttcttcgatcggcggcgtggcaggtc 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1421 ctgcgcccagttatcagagttaaccaaggacaccttcttcgatcggcggcgtggcaggtc 1362 Query: 248 ttccacttttgcattgggattttgttcaaggaatttcttgatgactaggaagcgggttcg 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1361 ttccacttttgcattgggattttgttcaaggaatttcttgatgactaggaagcgggttcg 1302 Query: 308 acagctggtccgcgtgtgattgcccaagaacgtggcacagttaagccactgggaagcccc 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1301 acagctggtccgcgtgtgattgcccaagaacgtggcacagttaagccactgggaagcccc 1242 Query: 368 gtattgcgttacgaagctcatcagccgtgtgtcgtcctgaacggaccaggagtcggtctt 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1241 gtattgcgttacgaagctcatcagccgtgtgtcgtcctgaacggaccaggagtcggtctt 1182 Query: 428 gttgcgttgtgccagtacattgtggtagcgagttcggagttgggttaacgaccggtttgg 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1181 gttgcgttgtgccagtacattgtggtagcgagttcggagttgggttaacgaccggtttgg 1122 Query: 488 gaaaagagaacgcggaaaacagtgaaactttccattgtactcttcaacggcggcgaacag 547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1121 gaaaagagaacgcggaaaacagtgaaactttccattgtactcttcaacggcggcgaacag 1062 Query: 548 catcatgtcctccttggtagtgaagggttc 577 |||||||||||||||||||||||||||||| Sbjct: 1061 catcatgtcctccttggtagtgaagggttc 1032 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,824 Number of Sequences: 18737 Number of extensions: 13824 Number of successful extensions: 312 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 311 Number of HSP's gapped (non-prelim): 1 length of query: 654 length of database: 41,270,998 effective HSP length: 17 effective length of query: 637 effective length of database: 40,952,469 effective search space: 26086722753 effective search space used: 26086722753 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946826|AI946826 bs31c05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs31c05 5', mRNA sequence. (332 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value BEST:GH11908-RB feature: mRNA loc=2R:join(16846975..16847117,168... 448 e-125 BEST:GH11908-RA feature: mRNA loc=2R:join(16846975..16847117,168... 448 e-125 >BEST:GH11908-RB feature: mRNA loc=2R:join(16846975..16847117, 16847166..16847892);ID=FBan0009284;gene_id=FBgn0046297;g ene_sym=BEST:GH11908;sym=CG9284;scaffold=AE003455;len=87 0 Length = 870 Score = 448 bits (226), Expect = e-125 Identities = 284/302 (94%), Gaps = 1/302 (0%) Strand = Plus / Minus Query: 32 gacgcttattaaagtctttaattaatcaacgtagattgacgttttaaataatctattcat 91 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 867 gacgcttattaaagtctttaattaatcaacgtagattgacgttttaaataatctattcat 808 Query: 92 tcttgagttggggaacagccgtcctaataacagtcaaatatggggtatccaagttaatcc 151 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 807 tcttgagtttgggaacagccgtcctaataacagtcaaatatggggtatccaagttaatcc 748 Query: 152 tagaaacctatcctatatatttcgaatcctagtcaatcgttatccatatttggggtatcc 211 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 747 tagaaacctatcctatatatttcgaatcctagtcaatcgttatccatatttggggtatcc 688 Query: 212 aagctttggggtatccaag-ggtagggtatccaagggtagggtatccaagtgtatggtat 270 ||||||||||||||||||| | |||||||||||||||||||||||||| ||| ||||| Sbjct: 687 aagctttggggtatccaagctttggggtatccaagggtagggtatccaagggtagggtat 628 Query: 271 ccaagtgtagggcattcaagtgaagggtatccaactatagggtaccaaattatagggtac 330 ||||||||| || || |||||| |||| |||||| | |||||| | || |||||||||| Sbjct: 627 ccaagtgtatggtatccaagtgtagggcatccaagtgaagggtatccaactatagggtac 568 Query: 331 ca 332 || Sbjct: 567 ca 566 >BEST:GH11908-RA feature: mRNA loc=2R:join(16846975..16847117, 16847173..16847892);ID=FBan0009284;gene_id=FBgn0046297;g ene_sym=BEST:GH11908;sym=CG9284;scaffold=AE003455;len=86 3 Length = 863 Score = 448 bits (226), Expect = e-125 Identities = 284/302 (94%), Gaps = 1/302 (0%) Strand = Plus / Minus Query: 32 gacgcttattaaagtctttaattaatcaacgtagattgacgttttaaataatctattcat 91 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 860 gacgcttattaaagtctttaattaatcaacgtagattgacgttttaaataatctattcat 801 Query: 92 tcttgagttggggaacagccgtcctaataacagtcaaatatggggtatccaagttaatcc 151 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 800 tcttgagtttgggaacagccgtcctaataacagtcaaatatggggtatccaagttaatcc 741 Query: 152 tagaaacctatcctatatatttcgaatcctagtcaatcgttatccatatttggggtatcc 211 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 740 tagaaacctatcctatatatttcgaatcctagtcaatcgttatccatatttggggtatcc 681 Query: 212 aagctttggggtatccaag-ggtagggtatccaagggtagggtatccaagtgtatggtat 270 ||||||||||||||||||| | |||||||||||||||||||||||||| ||| ||||| Sbjct: 680 aagctttggggtatccaagctttggggtatccaagggtagggtatccaagggtagggtat 621 Query: 271 ccaagtgtagggcattcaagtgaagggtatccaactatagggtaccaaattatagggtac 330 ||||||||| || || |||||| |||| |||||| | |||||| | || |||||||||| Sbjct: 620 ccaagtgtatggtatccaagtgtagggcatccaagtgaagggtatccaactatagggtac 561 Query: 331 ca 332 || Sbjct: 560 ca 559 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3461 Number of Sequences: 18737 Number of extensions: 3461 Number of successful extensions: 229 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 195 Number of HSP's gapped (non-prelim): 8 length of query: 332 length of database: 41,270,998 effective HSP length: 16 effective length of query: 316 effective length of database: 40,971,206 effective search space: 12946901096 effective search space used: 12946901096 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946855|AI946855 bs31h06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs31h06 5', mRNA sequence. (397 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8363 Number of Sequences: 18737 Number of extensions: 8363 Number of successful extensions: 756 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 756 Number of HSP's gapped (non-prelim): 0 length of query: 397 length of database: 41,270,998 effective HSP length: 17 effective length of query: 380 effective length of database: 40,952,469 effective search space: 15561938220 effective search space used: 15561938220 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946870|AI946870 bs32b08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs32b08 5', mRNA sequence. (320 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8193 Number of Sequences: 18737 Number of extensions: 8193 Number of successful extensions: 691 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 691 Number of HSP's gapped (non-prelim): 0 length of query: 320 length of database: 41,270,998 effective HSP length: 16 effective length of query: 304 effective length of database: 40,971,206 effective search space: 12455246624 effective search space used: 12455246624 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946891|AI946891 bs32e09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs32e09 5', mRNA sequence. (57 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 0 Number of Sequences: 18737 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 57 length of database: 41,270,998 effective HSP length: 15 effective length of query: 42 effective length of database: 40,989,943 effective search space: 1721577606 effective search space used: 1721577606 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 183 (363.3 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946895|AI946895 bs32f07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs32f07 5', mRNA sequence. (487 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32308-RA feature: mRNA loc=3L:complement(2018062..2018445,2018... 944 0.0 CG32308-RB feature: mRNA loc=3L:complement(2018062..2018823);ID=... 609 e-174 >CG32308-RA feature: mRNA loc=3L:complement(2018062..2018445, 2018503..2018823);ID=FBan0032308;gene_id=FBgn0052308;gen e_sym=CG32308;sym=CG32308;scaffold=AE003473;len=705 Length = 705 Score = 944 bits (476), Expect = 0.0 Identities = 479/480 (99%) Strand = Plus / Plus Query: 8 tacctctttaacaaattaaaaacgaaatttatgttaaaaattccatataatataagtttg 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 17 tacctctttaacaaattaaaaacgaaatttatgttaaaaattccatataatataagtttg 76 Query: 68 gacatttcagatagttattctttttggaccaaaactgttatggtttcagagtattaaaag 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77 gacatttcagatagttattctttttggaccaaaactgttatggtttcagagtattaaaag 136 Query: 128 tgcactttatcatcgccatgggagcatcgacagttaagcccttttctgaagcggaatgca 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 137 tgcactttatcatcgccatgggagcatcgacagttaagcccttttctgaagcggaatgca 196 Query: 188 aggctatcaagaagttcacgaagagttacaagaagcatcatgccgacctagacgaagacg 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 197 aggctatcaagaagttcacgaagagttacaagaagcatcatgccgacctagacgaagacg 256 Query: 248 aggtaaaaaggtcagcagaaaatgcctggggaaagcttttgccccatcaaaagaagtatt 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 257 aggtaaaaaggtcagcagaaaatgcctggggaaagcttttgccccatcaaaagaagtatt 316 Query: 308 ttgaggtgagacctaaagaaacccccgtaaaaagaatgttgccggccgccaggaaaaaac 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 317 ttgaggtgagacctaaagaaacccccgtaaaaagaatgttgccggccgccaggaaaaaac 376 Query: 368 ctaagaaccagaagaagaaagcagtccccaaatggcgttatcgttcgaggaaaagaccct 427 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 377 ctaagaaccagaagaagaaagcagtccccaaatggcgttatcgttcgaggaaaagaccca 436 Query: 428 tggccaagcccacgccaaatcccaataatcctgcaatgagcaccgcgttcattggatttt 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 437 tggccaagcccacgccaaatcccaataatcctgcaatgagcaccgcgttcattggatttt 496 >CG32308-RB feature: mRNA loc=3L:complement(2018062..2018823);ID=FBan0032308;gene_ id=FBgn0052308;gene_sym=CG32308;sym=CG32308;scaffold=AE0 03473;len=762 Length = 762 Score = 609 bits (307), Expect = e-174 Identities = 307/307 (100%) Strand = Plus / Plus Query: 8 tacctctttaacaaattaaaaacgaaatttatgttaaaaattccatataatataagtttg 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 17 tacctctttaacaaattaaaaacgaaatttatgttaaaaattccatataatataagtttg 76 Query: 68 gacatttcagatagttattctttttggaccaaaactgttatggtttcagagtattaaaag 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77 gacatttcagatagttattctttttggaccaaaactgttatggtttcagagtattaaaag 136 Query: 128 tgcactttatcatcgccatgggagcatcgacagttaagcccttttctgaagcggaatgca 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 137 tgcactttatcatcgccatgggagcatcgacagttaagcccttttctgaagcggaatgca 196 Query: 188 aggctatcaagaagttcacgaagagttacaagaagcatcatgccgacctagacgaagacg 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 197 aggctatcaagaagttcacgaagagttacaagaagcatcatgccgacctagacgaagacg 256 Query: 248 aggtaaaaaggtcagcagaaaatgcctggggaaagcttttgccccatcaaaagaagtatt 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 257 aggtaaaaaggtcagcagaaaatgcctggggaaagcttttgccccatcaaaagaagtatt 316 Query: 308 ttgaggt 314 ||||||| Sbjct: 317 ttgaggt 323 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,681 Number of Sequences: 18737 Number of extensions: 10681 Number of successful extensions: 226 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 223 Number of HSP's gapped (non-prelim): 3 length of query: 487 length of database: 41,270,998 effective HSP length: 17 effective length of query: 470 effective length of database: 40,952,469 effective search space: 19247660430 effective search space used: 19247660430 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946912|AI946912 bs32h08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs32h08 5', mRNA sequence. (116 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,324 Number of Sequences: 18737 Number of extensions: 12324 Number of successful extensions: 4861 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 4861 Number of HSP's gapped (non-prelim): 0 length of query: 116 length of database: 41,270,998 effective HSP length: 16 effective length of query: 100 effective length of database: 40,971,206 effective search space: 4097120600 effective search space used: 4097120600 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946918|AI946918 bs33a06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs33a06 5', mRNA sequence. (638 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG30293-RA feature: mRNA loc=2R:complement(16106722..16107691,16... 1219 0.0 >CG30293-RA feature: mRNA loc=2R:complement(16106722..16107691,16107750..16108017, 16108069..16108245, 16108298..16108507);ID=FBan0030293;gene_id=FBgn0050293;ge ne_sym=CG30293;sym=CG30293;scaffold=AE003452;len=1625 Length = 1625 Score = 1219 bits (615), Expect = 0.0 Identities = 627/631 (99%) Strand = Plus / Plus Query: 8 agacgaagcaatcccaccgtcccggcttcatgacctacaacgagtggtgcgtgcagcagt 67 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 988 agacgaagcaatcccaccgtcccggcttcatgacctacaacgagtggtgcgtgcaacagt 1047 Query: 68 ccaaatggagcaggaagtttgaccagctggccaaggtgccctatgccacaaggggtgatc 127 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1048 ccaaatggagcaggatgtttgaccagctggccaaggtgccctatgccacaaggggtgatc 1107 Query: 128 agtgggtaagctacgagaacccgcggagcatctgggccaagatgcatctgttgcaagagc 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1108 agtgggtaagctacgagaacccgcggagcatctgggccaagatgcatctgttgcaagagc 1167 Query: 188 acaagctgggtggcgccatggcctggaccattgacgtagacgatttccggggcagatgtg 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1168 acaagctgggtggcgccatggcctggaccattgacgtagacgatttccggggcagatgtg 1227 Query: 248 gcgagcagcatggattgctccgtgtgatcttctccgccctgggcgacatgaacgccctca 307 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct: 1228 gcgagcagcatggattgctccgtgtgatcttctccgccctgggcgacaagaacggcctca 1287 Query: 308 caacagagaagccgaccacagaagcatccggactgtgcccacatgatggctttagccgcg 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1288 caacagagaagccgaccacagaagcatccggactgtgcccacatgatggctttagccgcg 1347 Query: 368 atggttgggattgccgattgtatcatgagtgccgcgatggagagaggatctattacgagt 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1348 atggttgggattgccgattgtatcatgagtgccgcgatggagagaggatctattacgagt 1407 Query: 428 gcctcgagggtcagtatttcgacgagaaccagatcgtgtgccgcccagccgctgaggtca 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1408 gcctcgagggtcagtatttcgacgagaaccagatcgtgtgccgcccagccgctgaggtca 1467 Query: 488 agtgtgatcagaactttgtcatttggcgaccgggaatgcccgtttatagctacgacaaca 547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1468 agtgtgatcagaactttgtcatttggcgaccgggaatgcccgtttatagctacgacaaca 1527 Query: 548 tgccactaaacctaaagatcgtggagtaggtccataaaaatacacaaaccccatgacatt 607 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1528 tgccactaaacctaaagatcgtggagtaggtccataaaaatacacaaaccccatgacatt 1587 Query: 608 tttctggacaaataaaatctagcactttact 638 ||||||||||||||||||||||||||||||| Sbjct: 1588 tttctggacaaataaaatctagcactttact 1618 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,367 Number of Sequences: 18737 Number of extensions: 14367 Number of successful extensions: 308 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 307 Number of HSP's gapped (non-prelim): 1 length of query: 638 length of database: 41,270,998 effective HSP length: 17 effective length of query: 621 effective length of database: 40,952,469 effective search space: 25431483249 effective search space used: 25431483249 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946919|AI946919 bs33a07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs33a07 5', mRNA sequence. (580 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG33285-RA feature: mRNA loc=3L:complement(21005539..21006278);I... 1078 0.0 >CG33285-RA feature: mRNA loc=3L:complement(21005539..21006278);ID=FBan0033285;gen e_id=FBgn0053285;gene_sym=CG33285;sym=CG33285;scaffold=A E003593;len=740 Length = 740 Score = 1078 bits (544), Expect = 0.0 Identities = 565/573 (98%), Gaps = 1/573 (0%) Strand = Plus / Plus Query: 8 cagtttcggaacttcgtctaaatttgtgcgnnnnnnnggggggaaaaggcagaaggtaga 67 |||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 6 cagtttcggaacttcgtctaaatttgtgcgtttttttggggggaaaaggcagaaggtaga 65 Query: 68 tcaatggatgcttcagtcaaagaggagtatgctcgtgtttcgcatcccaatcgccagcgt 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 66 tcaatggatgcttcagtcaaagaggagtatgctcgtgtttcgcatcccaatcgccagcgt 125 Query: 128 gaattggccaagaagcgtcttctcttctgggcaggacgtctacagatgatgcctcacgag 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 126 gaattggccaagaagcgtcttctcttctgggcaggacgtctacagatgatgcctcacgag 185 Query: 188 gtggaagggatgtctgatggggagctcaaccttaggtttgaaaacgtaaagaggaaggaa 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 186 gtggaagggatgtctgatggggagctcaaccttaggtttgaaaacgtaaagaggaaggaa 245 Query: 248 gcagcatttgagcagcgaaaaattgactttgagcgctgggcagaactcaaccagttgaga 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 246 gcagcatttgagcagcgaaaaattgactttgagcgctgggcagaactcaaccagttgaga 305 Query: 308 tacctcatgtacgaagagcagagaaagtacaatgagcgttacggacacggtggaccctcc 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 306 tacctcatgtacgaagagcagagaaagtacaatgagcgttacggacacggtggaccctcc 365 Query: 368 atctggcgcatcctggccatggcccagcaggatctggaggagaagctccaaatagatcaa 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 366 atctggcgcatcctggccatggcccagcaggatctggaggagaagctccaaatagatcaa 425 Query: 428 ctgcgaggaagttgccagcgttttccctcacccatgtctctaatggaagaacgaacatag 487 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 426 ctgcgaggaagttgccagcgttttccctcacccatgtctctaatggaagaacg-acatag 484 Query: 488 tggcggaaggcaacggtttctggaaccagtgagatctagcctatgtggctgtatttctga 547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 485 tggcggaaggcaacggtttctggaaccagtgagatctagcctatgtggctgtatttctga 544 Query: 548 ttcagatgatgatctggaactgagaactgatcc 580 ||||||||||||||||||||||||||||||||| Sbjct: 545 ttcagatgatgatctggaactgagaactgatcc 577 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,192 Number of Sequences: 18737 Number of extensions: 13192 Number of successful extensions: 317 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 314 Number of HSP's gapped (non-prelim): 1 length of query: 580 length of database: 41,270,998 effective HSP length: 17 effective length of query: 563 effective length of database: 40,952,469 effective search space: 23056240047 effective search space used: 23056240047 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946955|AI946955 bs33d08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs33d08 5', mRNA sequence. (544 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31407-RA feature: mRNA loc=3R:complement(5848586..5849348);ID=... 1011 0.0 >CG31407-RA feature: mRNA loc=3R:complement(5848586..5849348);ID=FBan0031407;gene_ id=FBgn0051407;gene_sym=CG31407;sym=CG31407;scaffold=AE0 03685;len=763 Length = 763 Score = 1011 bits (510), Expect = 0.0 Identities = 528/537 (98%) Strand = Plus / Plus Query: 8 caaactacatattcattgtctctatcgaccaaaatatttcgatttcccttttccctggcg 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6 caaactacatattcattgtctctatcgaccaaaatatttcgatttcccttttccctggcg 65 Query: 68 aggcaaaaccaaagccgttgaaaaattcattgttaannnnnnnnncaataccaaaagcaa 127 |||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 66 aggcaaaaccaaagccgttgaaaaattcattgttaatttttttttcaataccaaaagcaa 125 Query: 128 gaatctaggtagtagaaagggaggcgcagcgtcgccatccagtcgcgtaattcagaatga 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 126 gaatctaggtagtagaaagggaggcgcagcgtcgccatccagtcgcgtaattcagaatga 185 Query: 188 ttcccactaatctgggcagacagaatggggctctggtgttggaagtgttgaaggtgctgg 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 186 ttcccactaatctgggcagacagaatggggctctggtgttggaagtgttgaaggtgctgg 245 Query: 248 gtcgcccggcgaccagttacgaggtggcggaaagagtggccgacgtctacaggctgccgc 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 246 gtcgcccggcgaccagttacgaggtggcggaaagagtggccgacgtctacaggctgccgc 305 Query: 308 tgcaccgcatccgtcccgtggtcaccgacgtcctggaggcaggatcacgacatggattct 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 306 tgcaccgcatccgtcccgtggtcaccgacgtcctggaggcaggatcacgacatggattct 365 Query: 368 ttagcagcctcaatggccattattcggtggtgcagccggttgtggagcaactgggacggg 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 366 ttagcagcctcaatggccattattcggtggtgcagccggttgtggagcaactgggacggg 425 Query: 428 atatagaccagtatgcagccgatatactggcgggatatagttgcgagggttctctgccca 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 426 atatagaccagtatgcagccgatatactggcgggatatagttgcgagggttctctgccca 485 Query: 488 agatgtcgaccctgatgctcaagctacagcaactggacgggtctccgcccatgatga 544 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 486 agatgtcgaccctgatgctcaagctacagcaactggacgggtctccgcccatgatga 542 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,159 Number of Sequences: 18737 Number of extensions: 12159 Number of successful extensions: 230 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 228 Number of HSP's gapped (non-prelim): 2 length of query: 544 length of database: 41,270,998 effective HSP length: 17 effective length of query: 527 effective length of database: 40,952,469 effective search space: 21581951163 effective search space used: 21581951163 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946964|AI946964 bs33e07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs33e07 5', mRNA sequence. (610 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG5327-RA feature: mRNA loc=2R:join(13679708..13679857,13679917.... 1080 0.0 CG5493-RA feature: mRNA loc=2R:complement(13680414..13680842,136... 799 0.0 >CG5327-RA feature: mRNA loc=2R:join(13679708..13679857,13679917..13680081, 13680161..13680874, 13680931..13682038);ID=FBan0005327;gene_id=FBgn0034363;ge ne_sym=CG5327;sym=CG5327;scaffold=AE003799;len=2137 Length = 2137 Score = 1080 bits (545), Expect = 0.0 Identities = 568/576 (98%) Strand = Plus / Plus Query: 7 gcgcagatcacccttcagcatcttcatgaagcaatgggaatcggcatggtcgtgcaccga 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1158 gcgcagatcacccttcagcatcttcatgaagcaatgggaatcggcatggtcgtgcaccga 1217 Query: 67 ggagccgtgtccttcgccccagcacagaatcagcagattgaactttccattgccagcatc 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1218 ggagccgtgtccttcgccccagcacagaatcagcagattgaactttccattgccagcatc 1277 Query: 127 cacgagattccgcgtgtaggtgtaacgatcgaacttggcatatttgcgccactcccgcgg 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1278 cacgagattccgcgtgtaggtgtaacgatcgaacttggcatatttgcgccactcccgcgg 1337 Query: 187 attggacttgtagctgagcataaggtgattcaccatctcgatgttaacatagttggactc 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 1338 attggacttgtagctgagcataaggtgattcaccatctcgatgttaacatagttcgactc 1397 Query: 247 gaattcccggtgaagggcggagaccaagtccgatagggaattcacctccggtccgtattt 306 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 1398 gaattcccggtgaagggcggccaccaagtccgatagggaattcacctccggtccgtattt 1457 Query: 307 caggggtttctccagcgcctgatagtagctagtggcctgacgcaggtacttctcctggtc 366 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1458 caggggtttctccagcggctgatagtagctagtggcctgacgcaggtacttctcctggtc 1517 Query: 367 aacctgctcgatctcggagtcgatcttggacagggccattttgggcttgctctgattgac 426 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1518 aacctgctcgatctcggtgtcgatcttggacagggccattttgggcttgctctgattgac 1577 Query: 427 ctangttgcgaaaagggaagcggaagttagagtggtggtgcatcagttaaggctgaaggg 486 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1578 ctaggttgcgaaaagggaagcggaagttagagtggtggtgcatcagttgaggctgaaggg 1637 Query: 487 cttggaaaactacctataaagtctataaagatcactgctcaattgatttagatgaattac 546 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1638 cgtggaaaactacctataaagtctataaagatcactgctcaattgatttagatgaattac 1697 Query: 547 gttgtaaagtcgatgatcgctgataatagctattgg 582 |||||||||||||||||||||||||||||||||||| Sbjct: 1698 gttgtaaagtcgatgatcgctgataatagctattgg 1733 >CG5493-RA feature: mRNA loc=2R:complement(13680414..13680842,13680920..13681478, 13681552..13681732);ID=FBan0005493;gene_id=FBgn0034364;g ene_sym=CG5493;sym=CG5493;scaffold=AE003799;len=1169 Length = 1169 Score = 799 bits (403), Expect = 0.0 Identities = 418/423 (98%) Strand = Plus / Minus Query: 7 gcgcagatcacccttcagcatcttcatgaagcaatgggaatcggcatggtcgtgcaccga 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 601 gcgcagatcacccttcagcatcttcatgaagcaatgggaatcggcatggtcgtgcaccga 542 Query: 67 ggagccgtgtccttcgccccagcacagaatcagcagattgaactttccattgccagcatc 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 ggagccgtgtccttcgccccagcacagaatcagcagattgaactttccattgccagcatc 482 Query: 127 cacgagattccgcgtgtaggtgtaacgatcgaacttggcatatttgcgccactcccgcgg 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 cacgagattccgcgtgtaggtgtaacgatcgaacttggcatatttgcgccactcccgcgg 422 Query: 187 attggacttgtagctgagcataaggtgattcaccatctcgatgttaacatagttggactc 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 421 attggacttgtagctgagcataaggtgattcaccatctcgatgttaacatagttcgactc 362 Query: 247 gaattcccggtgaagggcggagaccaagtccgatagggaattcacctccggtccgtattt 306 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 361 gaattcccggtgaagggcggccaccaagtccgatagggaattcacctccggtccgtattt 302 Query: 307 caggggtttctccagcgcctgatagtagctagtggcctgacgcaggtacttctcctggtc 366 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 caggggtttctccagcggctgatagtagctagtggcctgacgcaggtacttctcctggtc 242 Query: 367 aacctgctcgatctcggagtcgatcttggacagggccattttgggcttgctctgattgac 426 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 aacctgctcgatctcggtgtcgatcttggacagggccattttgggcttgctctgattgac 182 Query: 427 cta 429 ||| Sbjct: 181 cta 179 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,533 Number of Sequences: 18737 Number of extensions: 12533 Number of successful extensions: 258 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 253 Number of HSP's gapped (non-prelim): 5 length of query: 610 length of database: 41,270,998 effective HSP length: 17 effective length of query: 593 effective length of database: 40,952,469 effective search space: 24284814117 effective search space used: 24284814117 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946972|AI946972 bs33f03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs33f03 5', mRNA sequence. (375 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG2656-RA feature: mRNA loc=3R:join(2970484..2970601,2970664..29... 398 e-110 >CG2656-RA feature: mRNA loc=3R:join(2970484..2970601,2970664..2971322, 2976792..2977020);ID=FBan0002656;gene_id=FBgn0037478;gen e_sym=CG2656;sym=CG2656;scaffold=AE003672;len=1006 Length = 1006 Score = 398 bits (201), Expect = e-110 Identities = 215/222 (96%) Strand = Plus / Plus Query: 135 agtttggtgagatttttcccgttggattcccaggacgaggagagcgtgggcgatcttctg 194 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 776 agtttggtgagatttttcccgttggattcccaggacgaggagagcgtgggcgatcttctg 835 Query: 195 ctacaaattgacagtatcttgcagtacggcgaggatgcagacgtgaacgttaaggacttt 254 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 836 ctacaaattgacagtatcttgcagtacggcgaggatgcagacgtgaacgttaaggacttt 895 Query: 255 gatgaaccggaggaaggggatcaggattgnnnnnnntcaatttttcatattgcttaagaa 314 ||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 896 gatgaaccggaggaaggggatcaggattgaaaaaaatcaatttttcatattgcttaagaa 955 Query: 315 aatgtacaatattttatttttaataaaaaattaaatctaatc 356 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 956 aatgtacaatattttatttttaataaaaaattaaatctaatc 997 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,376 Number of Sequences: 18737 Number of extensions: 11376 Number of successful extensions: 1089 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 1088 Number of HSP's gapped (non-prelim): 1 length of query: 375 length of database: 41,270,998 effective HSP length: 17 effective length of query: 358 effective length of database: 40,952,469 effective search space: 14660983902 effective search space used: 14660983902 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946983|AI946983 bs33g02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs33g02 5', mRNA sequence. (568 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG30056-RA feature: mRNA loc=2R:7626798..7627374;ID=FBan0030056;... 1045 0.0 >CG30056-RA feature: mRNA loc=2R:7626798..7627374;ID=FBan0030056;gene_id=FBgn00500 56;gene_sym=CG30056;sym=CG30056;scaffold=AE003821;len=57 7 Length = 577 Score = 1045 bits (527), Expect = 0.0 Identities = 539/543 (99%) Strand = Plus / Plus Query: 7 gagatagaaattctaaaaaattacactagtttttgatctaccctgcgaaaaagaccaaga 66 |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| Sbjct: 29 gagatagaaattctaaaaaattaccctagtttttgatctacgctgcgaaaaagaccaaga 88 Query: 67 tacgagaatgtgcccgaggactcgttggggacggatcgatcccagtgtggaggtcaactt 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 89 tacgagaatgtgcccgaggactcgttggggacggatcgatcccagtgtggaggtcaactt 148 Query: 127 ggtgcacggaccgtcgagcaaggttatcaagcttgacaaccaaacgctgccacgacgtgt 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 149 ggtgcacggaccgtcgagcaaggttatcaagcttgacaaccaaacgctgccacgacgtgt 208 Query: 187 cgagcagcagctccttcttatggcctcgccgtcgccgttcctcaattttatgaataaatt 246 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 209 cgagcagcagctccttctaatggcctcgccgtcgccgttcctcaattttatgaataaatt 268 Query: 247 tcgcttggacgagatcctgattaaccatcagtacaagggcgtctacagcatgcgcaccgc 306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 269 tcgcttggacgagatcctgattaaccatcagtacaagggcgtctacagcatgcgcaccgc 328 Query: 307 ggccaccattaccgagctggccatctacacgtggaacgtgatgtccatctccgatcgcca 366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 329 ggccaccattaccgagctggccatctacacgtggaacgtgatgtccatctccgatcgcca 388 Query: 367 gccgtacatccggttggcccggttggcgcagcagattcagcaatcgcgtaagctgcgctt 426 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 389 gccgtacatccggttggcccggttggcgcagcagattcagcaatcgcggaagctgcgctt 448 Query: 427 tctgggccacagcagtcggtcggtgaccaagaggaatccacaatgtcccattgttgttta 486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 449 tctgggccacagcagtcggtcggtgaccaagaggaatccacaatgtcccattgttgttta 508 Query: 487 ggacagtcttggtttttgtttagtagcatacaaaagttttgaataaacataaattcttcc 546 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 509 ggacagtcttggtttttgtttagtagcatacaaaagttttgaataaacataaattcttcc 568 Query: 547 att 549 ||| Sbjct: 569 att 571 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,481 Number of Sequences: 18737 Number of extensions: 14481 Number of successful extensions: 315 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 314 Number of HSP's gapped (non-prelim): 1 length of query: 568 length of database: 41,270,998 effective HSP length: 17 effective length of query: 551 effective length of database: 40,952,469 effective search space: 22564810419 effective search space used: 22564810419 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946993|AI946993 bs33g12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs33g12 5', mRNA sequence. (522 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32192-RB feature: mRNA loc=3L:join(17989196..17989568,17989642... 946 0.0 CG32192-RA feature: mRNA loc=3L:join(17989196..17989568,17989651... 882 0.0 >CG32192-RB feature: mRNA loc=3L:join(17989196..17989568,17989642..17989723, 17989807..17989931);ID=FBan0032192;gene_id=FBgn0052192;g ene_sym=CG32192;sym=CG32192;scaffold=AE003522;len=580 Length = 580 Score = 946 bits (477), Expect = 0.0 Identities = 504/516 (97%) Strand = Plus / Plus Query: 7 ggtcgttcaaaattcgtgttcacaaaaacataaattttcagnnnnnnnnncttccctcaa 66 ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 11 ggtcgttcaaaattcgtgttcacaaaaacataaattttcagtttttttttcttccctcaa 70 Query: 67 aaaattttaagaaatatttaaaccagcttcacgatgtgttgtaagtcgtgcgaagaacaa 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 71 aaaattttaagaaatatttaaaccagcttcacgatgtgttgtaagtcgtgcgaagaacaa 130 Query: 127 ccagcatcatgctgctcgactttctatgcatttttctgcatgggagcaggattctttatg 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 131 ccagcatcatgctgctcgactttctatgcatttttctgcatgggagcaggattctttatg 190 Query: 187 tttagcttctcgctgcacaatgtaattatatcagaagagtctattaccattatggattgg 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 191 tttagcttctcgctgcacaatgtaattatatcagaagagtctattaccattatggattgg 250 Query: 247 tttctgcacatacatggcactgatttgacggaaaaacagcttttgatattgtacgcttcg 306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 251 tttctgcacatacatggcactgatttgacggaaaaacagcttttgatattgtacgcttcg 310 Query: 307 gatttaatttttgcctttacgtatgtcctcgcaggagttttgctagcttggggaatcaaa 366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 311 gatttaatttttgcctttacgtatgtcctcgcaggagttttgctagcttggggaatcaaa 370 Query: 367 agcaaaacaaagggatttattaaagcttgaaagatcttaagctatttctttcccatatat 426 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 371 agcaaaacaaagggatttattaaagctggaaagatcttaagctatttctttcccatatat 430 Query: 427 aatattggttatgtatttccattagttatacatattggctgtgtgataaaattatgcaga 486 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 431 aatattgtttatgtatttccattagttatacatattggctgtgtgataaaattatgcaga 490 Query: 487 tatctaaaggaaaactttgattagagtagagttgga 522 |||||||||||||||||||||||||| ||||||||| Sbjct: 491 tatctaaaggaaaactttgattagagcagagttgga 526 >CG32192-RA feature: mRNA loc=3L:join(17989196..17989568,17989651..17989723, 17989807..17989931);ID=FBan0032192;gene_id=FBgn0052192;g ene_sym=CG32192;sym=CG32192;scaffold=AE003522;len=571 Length = 571 Score = 882 bits (445), Expect = 0.0 Identities = 495/516 (95%), Gaps = 9/516 (1%) Strand = Plus / Plus Query: 7 ggtcgttcaaaattcgtgttcacaaaaacataaattttcagnnnnnnnnncttccctcaa 66 ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 11 ggtcgttcaaaattcgtgttcacaaaaacataaattttcagtttttttttcttccctcaa 70 Query: 67 aaaattttaagaaatatttaaaccagcttcacgatgtgttgtaagtcgtgcgaagaacaa 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 71 aaaattttaagaaatatttaaaccagcttcacgatgtgttgtaagtcgtgcgaagaacaa 130 Query: 127 ccagcatcatgctgctcgactttctatgcatttttctgcatgggagcaggattctttatg 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 131 ccagcatcatgctgctcgactttctatgcatttttctgcatgggagcaggattctttatg 190 Query: 187 tttagcttctcgctgcacaatgtaattatatcagaagagtctattaccattatggattgg 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 191 tttagcttctcgctgcacaatgtaattatatcagaagagtctattaccattatggattgg 250 Query: 247 tttctgcacatacatggcactgatttgacggaaaaacagcttttgatattgtacgcttcg 306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 251 tttctgcacatacatggcactgatttgacggaaaaacagcttttgatattgtacgcttcg 310 Query: 307 gatttaatttttgcctttacgtatgtcctcgcaggagttttgctagcttggggaatcaaa 366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 311 gatttaatttttgcctttacgtatgtcctcgcaggagttttgctagcttggggaatcaaa 370 Query: 367 agcaaaacaaagggatttattaaagcttgaaagatcttaagctatttctttcccatatat 426 ||| ||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 371 agc---------ggatttattaaagctggaaagatcttaagctatttctttcccatatat 421 Query: 427 aatattggttatgtatttccattagttatacatattggctgtgtgataaaattatgcaga 486 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 422 aatattgtttatgtatttccattagttatacatattggctgtgtgataaaattatgcaga 481 Query: 487 tatctaaaggaaaactttgattagagtagagttgga 522 |||||||||||||||||||||||||| ||||||||| Sbjct: 482 tatctaaaggaaaactttgattagagcagagttgga 517 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,825 Number of Sequences: 18737 Number of extensions: 11825 Number of successful extensions: 295 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 290 Number of HSP's gapped (non-prelim): 5 length of query: 522 length of database: 41,270,998 effective HSP length: 17 effective length of query: 505 effective length of database: 40,952,469 effective search space: 20680996845 effective search space used: 20680996845 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI947004|AI947004 bs34a01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs34a01 5', mRNA sequence. (523 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG33293-RA feature: mRNA loc=3R:complement(1065725..1066297,1066... 1015 0.0 >CG33293-RA feature: mRNA loc=3R:complement(1065725..1066297, 1066359..1066454);ID=FBan0033293;gene_id=FBgn0053293;gen e_sym=CG33293;sym=CG33293;scaffold=AE003603;len=669 Length = 669 Score = 1015 bits (512), Expect = 0.0 Identities = 515/516 (99%) Strand = Plus / Plus Query: 8 gtccgaagccactagacatatattttttaatattttgtaagagattccttccattatgga 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 56 gtccgaagccactagacatatattttttaatattttgtaagagattccttccattatgga 115 Query: 68 acgattcgcactgacaacctgcattcgccgtgtctggatcatgtccggatggctgcgcca 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 116 acgattcgcactgacaacctgcattcgccgtgtctggatcatgtccggatggctgcgcca 175 Query: 128 ggaggcggcaatagcagccggcatgttggtggtgcagcgacaccaggttgagctgaggaa 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 176 ggaggcggcaatagcagccggcatgttggtggtgcagcgacaccaggttgagctgaggaa 235 Query: 188 tgaggaggaggaggggctcaaagtcggacagcagactgcatccagtggcggtgacgtggg 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 236 tgaggaggaggaggggctcaaagtcggacagcagactgcatccagtggcggtgacgtggg 295 Query: 248 cgtggactcgcaaggaagactccgccgcgtgcggctgctagacgactacattgtgccctt 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 296 cgtggactcgcaaggaagactccgccgcgtgcggctgctagacgactacattgtgccctt 355 Query: 308 tgaatgcggtctttgattctcgatccccatctcctgttcaccgatatggttctgggccac 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 356 tgaatgcggtctttgattctcgatccccatctcctgttcaccgatatggttctgggccac 415 Query: 368 agcgcagttagttcatttcgcattcgaagcagttggcattcaagtagttcgattcgtgaa 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 416 agcgcagttagttcatttcgcattcgaagcagttggcattcaagtagttcgattcgtgaa 475 Query: 428 accgcttcttcaaattttggtcagacggaatcttcattgtatgcgctctacgtggacgga 487 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 476 accgcttctccaaattttggtcagacggaatcttcattgtatgcgctctacgtggacgga 535 Query: 488 gaacgaaaacaaatattttaatcgaagatatagccc 523 |||||||||||||||||||||||||||||||||||| Sbjct: 536 gaacgaaaacaaatattttaatcgaagatatagccc 571 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,938 Number of Sequences: 18737 Number of extensions: 16938 Number of successful extensions: 449 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 448 Number of HSP's gapped (non-prelim): 1 length of query: 523 length of database: 41,270,998 effective HSP length: 17 effective length of query: 506 effective length of database: 40,952,469 effective search space: 20721949314 effective search space used: 20721949314 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI947016|AI947016 bs34b01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs34b01 5', mRNA sequence. (465 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 32,971 Number of Sequences: 18737 Number of extensions: 32971 Number of successful extensions: 5398 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 5398 Number of HSP's gapped (non-prelim): 0 length of query: 465 length of database: 41,270,998 effective HSP length: 17 effective length of query: 448 effective length of database: 40,952,469 effective search space: 18346706112 effective search space used: 18346706112 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI947021|AI947021 bs34b06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs34b06 5', mRNA sequence. (474 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31468-RA feature: mRNA loc=3R:complement(19516200..19516498,19... 842 0.0 >CG31468-RA feature: mRNA loc=3R:complement(19516200..19516498, 19516559..19516733);ID=FBan0031468;gene_id=FBgn0047351;g ene_sym=CG31468;sym=CG31468;scaffold=AE003744;len=474 Length = 474 Score = 842 bits (425), Expect = 0.0 Identities = 425/425 (100%) Strand = Plus / Plus Query: 8 ctttttagagtttcaaaattttacatatttctaaaaataacttacagttcctgacctttc 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19 ctttttagagtttcaaaattttacatatttctaaaaataacttacagttcctgacctttc 78 Query: 68 gtaacctttgcatacgctcatcgattccaaaacttcgctaaaataaataaattttgaaat 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79 gtaacctttgcatacgctcatcgattccaaaacttcgctaaaataaataaattttgaaat 138 Query: 128 cgttagtttaaaagcatgtcgtgcaatcgttcttttggacctggccctggtgcctacaat 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 139 cgttagtttaaaagcatgtcgtgcaatcgttcttttggacctggccctggtgcctacaat 198 Query: 188 ctgcccagcacctttgggtttaagaactgcgacaagaggatgcagcgaagtccacagttc 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 199 ctgcccagcacctttgggtttaagaactgcgacaagaggatgcagcgaagtccacagttc 258 Query: 248 tcatttggcagatcgtcgagggcgtgtaatagtcctaggataccgcagggacccggccca 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 259 tcatttggcagatcgtcgagggcgtgtaatagtcctaggataccgcagggacccggccca 318 Query: 308 gcagattatcatgtgggcaaaataacgcgatatggacgtcctgcatcggaggacttcaat 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 319 gcagattatcatgtgggcaaaataacgcgatatggacgtcctgcatcggaggacttcaat 378 Query: 368 gtttatcgtcgtcgctaatgggttaaggaatttgtttaaggagtagtaaataaatggaaa 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 379 gtttatcgtcgtcgctaatgggttaaggaatttgtttaaggagtagtaaataaatggaaa 438 Query: 428 tattt 432 ||||| Sbjct: 439 tattt 443 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,857 Number of Sequences: 18737 Number of extensions: 10857 Number of successful extensions: 244 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 243 Number of HSP's gapped (non-prelim): 1 length of query: 474 length of database: 41,270,998 effective HSP length: 17 effective length of query: 457 effective length of database: 40,952,469 effective search space: 18715278333 effective search space used: 18715278333 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI947024|AI947024 bs34b09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs34b09 5', mRNA sequence. (441 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,130 Number of Sequences: 18737 Number of extensions: 10130 Number of successful extensions: 788 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 788 Number of HSP's gapped (non-prelim): 0 length of query: 441 length of database: 41,270,998 effective HSP length: 17 effective length of query: 424 effective length of database: 40,952,469 effective search space: 17363846856 effective search space used: 17363846856 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI947026|AI947026 bs34b12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs34b12 5', mRNA sequence. (344 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6550 Number of Sequences: 18737 Number of extensions: 6550 Number of successful extensions: 530 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 530 Number of HSP's gapped (non-prelim): 0 length of query: 344 length of database: 41,270,998 effective HSP length: 16 effective length of query: 328 effective length of database: 40,971,206 effective search space: 13438555568 effective search space used: 13438555568 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI947032|AI947032 bs34c07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs34c07 5', mRNA sequence. (576 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG10053-RA feature: mRNA loc=3R:join(3072982..3073037,3073107..3... 1041 0.0 >CG10053-RA feature: mRNA loc=3R:join(3072982..3073037, 3073107..3073888);ID=FBan0010053;gene_id=FBgn0037490;gen e_sym=CG10053;sym=CG10053;scaffold=AE003672;len=838 Length = 838 Score = 1041 bits (525), Expect = 0.0 Identities = 525/525 (100%) Strand = Plus / Minus Query: 52 attgattggagctagtgttcgtcacgagtgagtcctggacagttggagcccagatcttcg 111 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 821 attgattggagctagtgttcgtcacgagtgagtcctggacagttggagcccagatcttcg 762 Query: 112 gcgtcatcgtaatgggtcccacaccaatagcagaagcaataggctgtgcgcaggtagcca 171 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 761 gcgtcatcgtaatgggtcccacaccaatagcagaagcaataggctgtgcgcaggtagcca 702 Query: 172 gtgaggagttctaattgctccgagggactgtatggttcttgcttaggtggcacctcgact 231 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 701 gtgaggagttctaattgctccgagggactgtatggttcttgcttaggtggcacctcgact 642 Query: 232 tcaggatcgtcggcgtcgctctgtgattcatcttcatcttttggtttaggtggccaaaag 291 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 641 tcaggatcgtcggcgtcgctctgtgattcatcttcatcttttggtttaggtggccaaaag 582 Query: 292 aaatcgagatctggttctgtgatagcggacttaagatccaacgattcgcaggtctgctgg 351 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 581 aaatcgagatctggttctgtgatagcggacttaagatccaacgattcgcaggtctgctgg 522 Query: 352 caccgttttatgtcatactgtaattttcgctcctccgctttatgggtcgcgcgcctccta 411 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 521 caccgttttatgtcatactgtaattttcgctcctccgctttatgggtcgcgcgcctccta 462 Query: 412 taagcctctgtactgacttcctcgtcgcttttaatgccggccttgtttaggagatgtgcc 471 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 461 taagcctctgtactgacttcctcgtcgcttttaatgccggccttgtttaggagatgtgcc 402 Query: 472 ctccgcaacttctgccgcttgagggccaactctgcaacggctgcctcgcgcccaagtcct 531 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 401 ctccgcaacttctgccgcttgagggccaactctgcaacggctgcctcgcgcccaagtcct 342 Query: 532 ccacgaccgctctttatagttatccccacgggttcagtacgagca 576 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 341 ccacgaccgctctttatagttatccccacgggttcagtacgagca 297 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9995 Number of Sequences: 18737 Number of extensions: 9995 Number of successful extensions: 156 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 155 Number of HSP's gapped (non-prelim): 1 length of query: 576 length of database: 41,270,998 effective HSP length: 17 effective length of query: 559 effective length of database: 40,952,469 effective search space: 22892430171 effective search space used: 22892430171 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI947044|AI947044 bs34d07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs34d07 5', mRNA sequence. (659 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG30362-RA feature: mRNA loc=2R:complement(3426289..3427407);ID=... 1164 0.0 >CG30362-RA feature: mRNA loc=2R:complement(3426289..3427407);ID=FBan0030362;gene_ id=FBgn0050362;gene_sym=CG30362;sym=CG30362;scaffold=AE0 03837;len=1119 Length = 1119 Score = 1164 bits (587), Expect = 0.0 Identities = 590/591 (99%) Strand = Plus / Plus Query: 8 ggaacgatcacattccgttacaacgctcatgatgaaaatttcgcagtgactcccagtttt 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 120 ggaacgatcacattccgttacaacgctcatgatgaaaatttcgcagtgactcccagtttt 179 Query: 68 cgtttatattttaaaccaggacaaaatttttgcagtgtgtacggcatttttgcaacatag 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 180 cgtttatattttaaaccaggacaaaatttttgcagtgtgtacggcatttttgcaacatag 239 Query: 128 tttatactccactttgaatccggcttcattgaaacaatgatgctggccaagaacacgctc 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 240 tttatactccactttgaatccggcttcattgaaacaatgatgctggccaagaacacgctc 299 Query: 188 tcccgagcaccggttgccataaggagtggattgacgtcaaggaccattcaggtgcgcatg 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 300 tcccgagcaccggttgccataaggagtggattgacgtcaaggaccattcaggtgcgcatg 359 Query: 248 gagtcgttgttcgatccgtatgaatttggtgcgcccacgttggccaccgaacgaaaggat 307 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 360 gagtcgttgttcgatccgtatgaatttggtgcgcccacgatggccaccgaacgaaaggat 419 Query: 308 ctgaaaaagaatgatcccgcggacaacaccaaggtgccggtcaaggacatctgctggatg 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 420 ctgaaaaagaatgatcccgcggacaacaccaaggtgccggtcaaggacatctgctggatg 479 Query: 368 tcgatgcggcgcagtgagtacaagtgccgttccgaccccgagttcaacgtgccggccttt 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 480 tcgatgcggcgcagtgagtacaagtgccgttccgaccccgagttcaacgtgccggccttt 539 Query: 428 attgactcccgtaaaagatgcctgtccgatcgctgtgcgatggcctatccgccgtctgac 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 540 attgactcccgtaaaagatgcctgtccgatcgctgtgcgatggcctatccgccgtctgac 599 Query: 488 ctcatgttctacaagcccaccgataagctgaatcgcaagtaccagcgcacctggtgcgag 547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 600 ctcatgttctacaagcccaccgataagctgaatcgcaagtaccagcgcacctggtgcgag 659 Query: 548 tgcgagctgcaggagcgcaaaaggaaggccgtttgccggtcccgtccgccc 598 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 660 tgcgagctgcaggagcgcaaaaggaaggccgtttgccggtcccgtccgccc 710 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,143 Number of Sequences: 18737 Number of extensions: 15143 Number of successful extensions: 357 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 355 Number of HSP's gapped (non-prelim): 2 length of query: 659 length of database: 41,270,998 effective HSP length: 17 effective length of query: 642 effective length of database: 40,952,469 effective search space: 26291485098 effective search space used: 26291485098 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI947046|AI947046 bs34d09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs34d09 5', mRNA sequence. (632 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32119-RA feature: mRNA loc=3L:complement(13204410..13205484,13... 1168 0.0 >CG32119-RA feature: mRNA loc=3L:complement(13204410..13205484, 13205539..13206249);ID=FBan0032119;gene_id=FBgn0052119;g ene_sym=CG32119;sym=CG32119;scaffold=AE003538;len=1786 Length = 1786 Score = 1168 bits (589), Expect = 0.0 Identities = 616/625 (98%) Strand = Plus / Plus Query: 8 ttaaaattagcaaataaaaattagaaaaataccatttcatgtctgggcgaaggtgtgtca 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 33 ttaaaattagcaaataaaaattagaaaaataccatttcatgtctgggcgaaggtgtgtca 92 Query: 68 tctgtggcgaggagccaccggcaaaggatgcgaagggcaacgaggcgtatgcatatccca 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 93 tctgtggcgaggagccaccggcaaaggatgcgaagggcaacgaggcgtatgcatatccca 152 Query: 128 agacggaggaggaggccaggatctggcagtccagcatggcggccaagaactgctgcttgg 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 153 agacggaggaggaggccaggatctggcagtccagcatggcggccaagaactgctgcttgg 212 Query: 188 agagcattcagaaccaatgttgcgtctgtgtggagcacatacccgactttgtgaagcggg 247 |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct: 213 agagcattcagaaccaatgttgcgtctgcgtggagcacatacccgattttgtgaagcggg 272 Query: 248 ccaagaaaatcgggaagaggctgcgacatctggagcgcgaaaaagagaagcgccgccatg 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 273 ccaagaaaatcgggaagaggctgcgacatctggagcgcgaaaaagagaagcgccgccatg 332 Query: 308 aaaagaaggatggcgaaggatgcaaatgtccggatgatggtaagccgggtcgggaacgtc 367 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 333 aaaagaaggatggcgaaggatgcaaatgtccggatgatggtaagcctggtcgggaacgtc 392 Query: 368 catcggttaatgttcttctcctaaatggagctttgttgcccacatattgcggaaagggac 427 ||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||| Sbjct: 393 catcggttaatgttcttctcctaaatggagcttcgttgcccacgtattgcggcaagggac 452 Query: 428 agtcctgtgtggatttgagaccacttccggctgaagaaggcgattccgaattaaagataa 487 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 453 agtcctgtgtggatttgagaccacttccagctgaagaaggcgattccgaattaaagataa 512 Query: 488 ccaagaggctagattccaaggaatcggacacggagatctttgtgcaggaatccgaattta 547 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 513 ccaagaggctagattccaaggaatcggacacggaggtctttgtgcaggaatccgaattta 572 Query: 548 aggacaccggcagtaactttcccgatatcgatggcaccgaggtcaccgttctgcgcactc 607 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 573 aggacaccggcagtaactttcccgatatcgatggcaccgaggtcaccgttctgcgcactc 632 Query: 608 ccatgcaagaagatgagcagctgga 632 |||||||||| |||||||||||||| Sbjct: 633 ccatgcaagaggatgagcagctgga 657 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 19,565 Number of Sequences: 18737 Number of extensions: 19565 Number of successful extensions: 534 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 533 Number of HSP's gapped (non-prelim): 1 length of query: 632 length of database: 41,270,998 effective HSP length: 17 effective length of query: 615 effective length of database: 40,952,469 effective search space: 25185768435 effective search space used: 25185768435 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI947052|AI947052 bs34e04.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs34e04 5', mRNA sequence. (636 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value BEST:GH10766-RA feature: mRNA loc=3L:complement(21747822..217480... 765 0.0 >BEST:GH10766-RA feature: mRNA loc=3L:complement(21747822..21748010,21748068..21748764, 21748824..21749483);ID=FBan0007148;gene_id=FBgn0046301;ge ne_sym=BEST:GH10766;sym=CG7148;scaffold=AE003595;len=1546 Length = 1546 Score = 765 bits (386), Expect = 0.0 Identities = 389/390 (99%) Strand = Plus / Minus Query: 247 cgctctatccacaaagtcctcaaagccacttaggtcgtagtagagcttcagaggtggcga 306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1357 cgctctatccacaaagtcctcaaagccacttaggtcgtagtagagcttcagaggtggcga 1298 Query: 307 acgtccaactcccgtcttctgcttgaacggctcccgccgcttaagaatactcaaggcccg 366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1297 acgtccaactcccgtcttctgcttgaacggctcccgccgcttaagaatactcaaggcccg 1238 Query: 367 tggcaaaaatgttggcgtcagatttcggcagtaggacacgtcgaggtgttccaatcgtgg 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1237 tggcaaaaatgttggcgtcagatttcggcagtaggacacgtcgaggtgttccaatcgtgg 1178 Query: 427 acagagttccacgaattctaagaggatttcgtcgcttaagtcattccagttgcgcacgca 486 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1177 acagagttccacgaattctaagaggatttcgtcgcttaggtcattccagttgcgcacgca 1118 Query: 487 gagcagctgcagctctgtcatacaggtatagcgctttaggtagtctgccgaatgagtcca 546 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1117 gagcagctgcagctctgtcatacaggtatagcgctttaggtagtctgccgaatgagtcca 1058 Query: 547 gctgcaaatggccaggcgcttcagcctgcgatgcgtccagatgggcagcttctcatccca 606 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1057 gctgcaaatggccaggcgcttcagcctgcgatgcgtccagatgggcagcttctcatccca 998 Query: 607 gcccggttcaaggggcatatagtacccgtc 636 |||||||||||||||||||||||||||||| Sbjct: 997 gcccggttcaaggggcatatagtacccgtc 968 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,563 Number of Sequences: 18737 Number of extensions: 14563 Number of successful extensions: 373 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 371 Number of HSP's gapped (non-prelim): 2 length of query: 636 length of database: 41,270,998 effective HSP length: 17 effective length of query: 619 effective length of database: 40,952,469 effective search space: 25349578311 effective search space used: 25349578311 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI947065|AI947065 bs34f06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs34f06 5', mRNA sequence. (107 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1183 Number of Sequences: 18737 Number of extensions: 1183 Number of successful extensions: 419 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 419 Number of HSP's gapped (non-prelim): 0 length of query: 107 length of database: 41,270,998 effective HSP length: 16 effective length of query: 91 effective length of database: 40,971,206 effective search space: 3728379746 effective search space used: 3728379746 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI947066|AI947066 bs34f07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs34f07 5', mRNA sequence. (647 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31804-RA feature: mRNA loc=2L:17341578..17342318;ID=FBan003180... 1138 0.0 >CG31804-RA feature: mRNA loc=2L:17341578..17342318;ID=FBan0031804;gene_id=FBgn005 1804;gene_sym=CG31804;sym=CG31804;scaffold=AE003654;len= 741 Length = 741 Score = 1138 bits (574), Expect = 0.0 Identities = 618/640 (96%) Strand = Plus / Plus Query: 8 aatcaaaatctgaagtgtagtaagattttcaaaagggcgaaaaaggcaaattctcttgat 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 42 aatcaaaatctgaagtgtagtaagattttcaaaagggcgaaaaaggcaaattctcttgat 101 Query: 68 tatggcagnnnnnnntagttcgaacgatggacagtacttccttcaatcgaaacattttat 127 |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 102 tatggcagaaaaaaatagttcgaacgatggacagtacttccttcaatcgaaacattttat 161 Query: 128 cgattttagacagaacgaaacggacacagtggattcggctatggatgtagctaccaggca 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 162 cgattttagacagaacgaaacggacacagtggattcggctatggatgtagctaccaggca 221 Query: 188 aagtgcatccaccaaaaagaagatacatatccaccaaggactaggatctagaaaaacgtc 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 222 aagtgcatccaccaaaaagaagatacatatccaccaaggactaggatctagaaaaacgtc 281 Query: 248 aaagaatattaaacggaaaatgtcgaaagctagtcaagacctgaaaagaacttctaaaac 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 282 aaagaatattaaacggaaaatgtcgaaagctagtcaagacctgaaaagaacttctaaaac 341 Query: 308 tgccgcgaaaccacagaagcaaaggttatcacagagttttnnnnnnngaaatattccggn 367 |||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 342 tgccgcgaaaccacagaagcaaaggttatcacagagttttaaaaaaagaaatattccgga 401 Query: 368 nnnnnnntttgacaagttcccgcaggcgggagtttcccgaaagcaggatggcaaattccg 427 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 402 aaaaaaatttgacaagttcccgcaggcgggagtttcccgaaagcaggatggcaaattccg 461 Query: 428 aaccataactatcaaaaaggaagcacaatgtcgtctgcgaactgccttaaaattactgga 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 462 aaccataactatcaaaaaggaagcacaatgtcgtctgcgaactgccttaaaattactgga 521 Query: 488 tatccttgaagggaaatatgatgacagtgatagagaatgttcgttggattctaaatcctt 547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 522 tatccttgaagggaaatatgatgacagtgatagagaatgttcgttggattctaaatcctt 581 Query: 548 acatggttcagtaaaaagaaatacccgtcgattgcagactatgcaggatctcccacccag 607 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 582 acatggttcagtaaaaagaaatacccgtcgattgcagactatgcaggatctcccacccag 641 Query: 608 ggatttctttggtctttgcagggattgccgatcacgatgc 647 |||||||||||||||||||||||||||||||||||||||| Sbjct: 642 ggatttctttggtctttgcagggattgccgatcacgatgc 681 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,676 Number of Sequences: 18737 Number of extensions: 11676 Number of successful extensions: 245 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 242 Number of HSP's gapped (non-prelim): 2 length of query: 647 length of database: 41,270,998 effective HSP length: 17 effective length of query: 630 effective length of database: 40,952,469 effective search space: 25800055470 effective search space used: 25800055470 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI947086|AI947086 bs34h05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs34h05 5', mRNA sequence. (413 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,141 Number of Sequences: 18737 Number of extensions: 13141 Number of successful extensions: 1406 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1406 Number of HSP's gapped (non-prelim): 0 length of query: 413 length of database: 41,270,998 effective HSP length: 17 effective length of query: 396 effective length of database: 40,952,469 effective search space: 16217177724 effective search space used: 16217177724 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI947087|AI947087 bs34h06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs34h06 5', mRNA sequence. (578 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,744 Number of Sequences: 18737 Number of extensions: 13744 Number of successful extensions: 290 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 290 Number of HSP's gapped (non-prelim): 0 length of query: 578 length of database: 41,270,998 effective HSP length: 17 effective length of query: 561 effective length of database: 40,952,469 effective search space: 22974335109 effective search space used: 22974335109 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI947088|AI947088 bs34h07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs34h07 5', mRNA sequence. (519 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31816-RA feature: mRNA loc=2L:join(16520640..16520867,16521077... 872 0.0 >CG31816-RA feature: mRNA loc=2L:join(16520640..16520867, 16521077..16521349);ID=FBan0031816;gene_id=FBgn0051816;g ene_sym=CG31816;sym=CG31816;scaffold=AE003651;len=501 Length = 501 Score = 872 bits (440), Expect = 0.0 Identities = 476/491 (96%) Strand = Plus / Plus Query: 8 aatccataaatttatcgctttaggaaatgcgttttcaaaaatcttaagtttttatacatt 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9 aatccataaatttatcgctttaggaaatgcgttttcaaaaatcttaagtttttatacatt 68 Query: 68 gtcaccgacaaaatcttagtgaaaccggtataaataatcccctcatgaaatgaataagca 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 69 gtcaccgacaaaatcttagtgaaaccggtataaataatcccctcatgaaatgaataagca 128 Query: 128 gaccaaagaatggtcgcgagctcgcctatgtaagcctaaggataatcttaccaccgaagc 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 129 gaccaaagaatggtcgcgagctcgcctatgtaagcctaaggataatcttaccaccgaagc 188 Query: 188 gggaaaacgagaacgctttgtgccgtcctgcgagctagagtgcagtccggtatcgatgtc 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 189 gggaaaacgagaacgctttgtgccgtcctgcgagctagagtgcagtccggtatcgatgtc 248 Query: 248 gcacttgattggctgggagtacgctagaatttggctgcgcgatcgcgacgaatttgtgca 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 249 gcacttgattggctgggagtacgctagaatttggctgcgcgatcgcgacgaatttgtgca 308 Query: 308 gcaacgcgaacgtgctgtcaaagctaaatacatcaagaatgacttcgagtggtggttaag 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 309 gcaacgcgaacgtgctgtcaaagctaaatacatcaagaatgacttcgagtggtggttaag 368 Query: 368 gctacgaaaaacatcgaaaaagttctgcanagntggggcataaaagcgacnnnnnnntga 427 ||| ||||||||||||||||||||||||| || ||||||||| ||||||| ||| Sbjct: 369 gctgcgaaaaacatcgaaaaagttctgcaaagttggggcatagaagcgacaaaataatga 428 Query: 428 ggacagcaaaattattcctattccatttttaaggggatatactgttatttaaataaaata 487 ||||||| ||||||||||||||||||||||||||| |||||| |||||| |||||||||| Sbjct: 429 ggacagcgaaattattcctattccatttttaagggaatatacagttattaaaataaaata 488 Query: 488 ttttcataccc 498 ||||||||||| Sbjct: 489 ttttcataccc 499 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9449 Number of Sequences: 18737 Number of extensions: 9449 Number of successful extensions: 208 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 206 Number of HSP's gapped (non-prelim): 1 length of query: 519 length of database: 41,270,998 effective HSP length: 17 effective length of query: 502 effective length of database: 40,952,469 effective search space: 20558139438 effective search space used: 20558139438 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI947092|AI947092 bs34h11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs34h11 5', mRNA sequence. (335 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value aret-RB feature: mRNA loc=2L:join(12194714..12195001,12229739..1... 563 e-160 >aret-RB feature: mRNA loc=2L:join(12194714..12195001,12229739..12230651, 12260462..12260955,12267708..12267790, 12271385..12271433,12287439..12287620, 12287685..12287982,12288059..12288265, 12293317..12293466,12299553..12299964, 12301247..12301336, 12301397..12301672);ID=FBan0031762;gene_id=FBgn0000114;g ene_sym=aret;sym=CG31762;scaffold=AE003635;len=3442 Length = 3442 Score = 563 bits (284), Expect = e-160 Identities = 298/305 (97%) Strand = Plus / Plus Query: 17 tgtgtaacgtacatataattttataaaagtttatcaatttttcggcttattggtggcaaa 76 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12 tgtgtaacgtacatataattttataaaagtttatcaatttttcggcttattggtggcaaa 71 Query: 77 attctcaatgtgttaacctttcggccgtaccgcgtcactcttccatgcttttatcaataa 136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 72 attctcaatgtgttaacctttcggccgtaccgcgtcactcttccatgcttttatcaataa 131 Query: 137 ttcttaagaagaaaatctacnnnnnnntatacaaagtatttacccccacaagactacaaa 196 |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 132 ttcttaagaagaaaatctacaaaaaaatatacaaagtatttacccccacaagactacaaa 191 Query: 197 tgaaatagcccagttatccgctttcggctacaaattctacaagtgtaaaaaggaaaataa 256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 192 tgaaatagcccagttatccgctttcggctacaaattctacaagtgtaaaaaggaaaataa 251 Query: 257 gaagaaatatagcaaattcccgcagcaagtgaaataggcaaattataggcaataatttac 316 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 252 gaagaaatatagcaaattcccgcagcaagtgaaataggcaaattataggcaataatttac 311 Query: 317 aattt 321 ||||| Sbjct: 312 aattt 316 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6590 Number of Sequences: 18737 Number of extensions: 6590 Number of successful extensions: 533 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 532 Number of HSP's gapped (non-prelim): 1 length of query: 335 length of database: 41,270,998 effective HSP length: 16 effective length of query: 319 effective length of database: 40,971,206 effective search space: 13069814714 effective search space used: 13069814714 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI947099|AI947099 bs35a07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs35a07 5', mRNA sequence. (526 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31882-RA feature: mRNA loc=2L:complement(9616812..9617514);ID=... 1029 0.0 >CG31882-RA feature: mRNA loc=2L:complement(9616812..9617514);ID=FBan0031882;gene_ id=FBgn0051882;gene_sym=CG31882;sym=CG31882;scaffold=AE0 03625;len=703 Length = 703 Score = 1029 bits (519), Expect = 0.0 Identities = 519/519 (100%) Strand = Plus / Plus Query: 8 attttgaagtgtcgcactcccataaagaactgtttagcaatgttaaatttaggtaacatt 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 24 attttgaagtgtcgcactcccataaagaactgtttagcaatgttaaatttaggtaacatt 83 Query: 68 aaaaatcgatccaaattctatgatcaacaggatgaaaacagactccaaaagcggcgcaag 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 84 aaaaatcgatccaaattctatgatcaacaggatgaaaacagactccaaaagcggcgcaag 143 Query: 128 aagggtgctgcccaattggatgcaaaaccattcccggacgagcccgtaacgtcgagtgag 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 144 aagggtgctgcccaattggatgcaaaaccattcccggacgagcccgtaacgtcgagtgag 203 Query: 188 gaaagtctatatcctcgggttagccgtatgctacgtcggatgagctcttcgctctggtca 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 204 gaaagtctatatcctcgggttagccgtatgctacgtcggatgagctcttcgctctggtca 263 Query: 248 cgactttggggtctatccaatcaatccactgactctgcccgcctgaagacacatccgaac 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 264 cgactttggggtctatccaatcaatccactgactctgcccgcctgaagacacatccgaac 323 Query: 308 gagctaggcaaccagtacccgccgaggacggattcggggcagatccctctgtggcaggcc 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 324 gagctaggcaaccagtacccgccgaggacggattcggggcagatccctctgtggcaggcc 383 Query: 368 agcccgacagcttatttgggatatcgtttccgattgggcagatagatatagggtccgctt 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 384 agcccgacagcttatttgggatatcgtttccgattgggcagatagatatagggtccgctt 443 Query: 428 tgtgtcaatagaagtgggacagctgaaatcaaagtttgcgccggtcgatattcgccggat 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 444 tgtgtcaatagaagtgggacagctgaaatcaaagtttgcgccggtcgatattcgccggat 503 Query: 488 cggctctctggcggaaacactttggacttcctattaccg 526 ||||||||||||||||||||||||||||||||||||||| Sbjct: 504 cggctctctggcggaaacactttggacttcctattaccg 542 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9077 Number of Sequences: 18737 Number of extensions: 9077 Number of successful extensions: 151 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 150 Number of HSP's gapped (non-prelim): 1 length of query: 526 length of database: 41,270,998 effective HSP length: 17 effective length of query: 509 effective length of database: 40,952,469 effective search space: 20844806721 effective search space used: 20844806721 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI947109|AI947109 bs35b12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs35b12 5', mRNA sequence. (533 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,550 Number of Sequences: 18737 Number of extensions: 10550 Number of successful extensions: 197 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 197 Number of HSP's gapped (non-prelim): 0 length of query: 533 length of database: 41,270,998 effective HSP length: 17 effective length of query: 516 effective length of database: 40,952,469 effective search space: 21131474004 effective search space used: 21131474004 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI947116|AI947116 bs35c08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs35c08 5', mRNA sequence. (604 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31913-RA feature: mRNA loc=2L:5776246..5777108;ID=FBan0031913;... 1076 0.0 >CG31913-RA feature: mRNA loc=2L:5776246..5777108;ID=FBan0031913;gene_id=FBgn00519 13;gene_sym=CG31913;sym=CG31913;scaffold=AE003611;len=86 3 Length = 863 Score = 1076 bits (543), Expect = 0.0 Identities = 546/547 (99%) Strand = Plus / Plus Query: 58 aaattctaaaagtgatttcttgccgactaagaggccgccatgccaaccttaaagttgcgt 117 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 51 aaattctaaaagtgatttcttgccgactaagaggccgccatgccaaccttaaagttgcgt 110 Query: 118 atcggtctgccctcgaagcgaacgatgggcagcatatgcatctgcggagcactcgcctcc 177 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 111 atcggtctgccctcgaagcgaacgatgggcagcatatgcatctgcggagcactcgcctcc 170 Query: 178 atctcgggcctggcctacatgcgctggcgacttgaggaccgtgtacgccagacggagttc 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 171 atctcgggcctggcctacatgcgctggcgacttgaggaccgtgtacgccagacggagttc 230 Query: 238 tatcagttggccatccagcagctacgccagcacagtggagcggtcggtctgctgggcgag 297 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 231 tatcagttggccatccagcagctacgccagcacagtggagcggtcggtctgctgggcgag 290 Query: 298 cccatcaaggagtcgggctttaatctgtccaacgagaagaatcgctgtgacgaggacaag 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 291 cccatcaaggagtcgggctttaatctgtccaacgagaagaatcgctgtgacgaggacaag 350 Query: 358 gcccagctgcagttccatgtccagggtcccaaggacagggggaccgtctatttctgggcc 417 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 351 gcccagctgcagttccatgtccagggtcccaaggacagggggaccgtctatttctgggcc 410 Query: 418 tcaaacaaccagaaacagggctggctgatcgatcgcctggagctcgaaacgagacagaac 477 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 411 tcaaacaaccagaaacagggctggctgatcgatcgcctggagctcgaaacgagacagaac 470 Query: 478 ccgaacacacgctacctgcttaagaagcccccgaactactcgctggtcagcagtgatggt 537 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 471 ccgaacacacgctacctgcttaagaagcccccgaactactcgctggtcagcagtgatggt 530 Query: 538 gatccggatccccctaatgccgagtcctccgaggaaacccagcaaccgcagacgccgctc 597 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 531 gatccggatccccctaatgccgagtcctccgaggaaacccagcagccgcagacgccgctc 590 Query: 598 gagccac 604 ||||||| Sbjct: 591 gagccac 597 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,470 Number of Sequences: 18737 Number of extensions: 14470 Number of successful extensions: 338 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 336 Number of HSP's gapped (non-prelim): 2 length of query: 604 length of database: 41,270,998 effective HSP length: 17 effective length of query: 587 effective length of database: 40,952,469 effective search space: 24039099303 effective search space used: 24039099303 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI947125|AI947125 bs35d06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs35d06 5', mRNA sequence. (622 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG33293-RA feature: mRNA loc=3R:complement(1065725..1066297,1066... 1181 0.0 >CG33293-RA feature: mRNA loc=3R:complement(1065725..1066297, 1066359..1066454);ID=FBan0033293;gene_id=FBgn0053293;gen e_sym=CG33293;sym=CG33293;scaffold=AE003603;len=669 Length = 669 Score = 1181 bits (596), Expect = 0.0 Identities = 596/596 (100%) Strand = Plus / Plus Query: 8 gccactagacatatattttttaatattttgtaagagattccttccattatggaacgattc 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 63 gccactagacatatattttttaatattttgtaagagattccttccattatggaacgattc 122 Query: 68 gcactgacaacctgcattcgccgtgtctggatcatgtccggatggctgcgccaggaggcg 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 123 gcactgacaacctgcattcgccgtgtctggatcatgtccggatggctgcgccaggaggcg 182 Query: 128 gcaatagcagccggcatgttggtggtgcagcgacaccaggttgagctgaggaatgaggag 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 183 gcaatagcagccggcatgttggtggtgcagcgacaccaggttgagctgaggaatgaggag 242 Query: 188 gaggaggggctcaaagtcggacagcagactgcatccagtggcggtgacgtgggcgtggac 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 243 gaggaggggctcaaagtcggacagcagactgcatccagtggcggtgacgtgggcgtggac 302 Query: 248 tcgcaaggaagactccgccgcgtgcggctgctagacgactacattgtgccctttgaatgc 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 303 tcgcaaggaagactccgccgcgtgcggctgctagacgactacattgtgccctttgaatgc 362 Query: 308 ggtctttgattctcgatccccatctcctgttcaccgatatggttctgggccacagcgcag 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 363 ggtctttgattctcgatccccatctcctgttcaccgatatggttctgggccacagcgcag 422 Query: 368 ttagttcatttcgcattcgaagcagttggcattcaagtagttcgattcgtgaaaccgctt 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 423 ttagttcatttcgcattcgaagcagttggcattcaagtagttcgattcgtgaaaccgctt 482 Query: 428 ctccaaattttggtcagacggaatcttcattgtatgcgctctacgtggacggagaacgaa 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 483 ctccaaattttggtcagacggaatcttcattgtatgcgctctacgtggacggagaacgaa 542 Query: 488 aacaaatattttaatcgaagatatagccccaaaaagcatgttattgtaaaattttatatt 547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 543 aacaaatattttaatcgaagatatagccccaaaaagcatgttattgtaaaattttatatt 602 Query: 548 ttcacgagtagttcgcgttaatctcgacgttttagcgacattaaaattaaacaatc 603 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 603 ttcacgagtagttcgcgttaatctcgacgttttagcgacattaaaattaaacaatc 658 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 19,214 Number of Sequences: 18737 Number of extensions: 19214 Number of successful extensions: 513 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 512 Number of HSP's gapped (non-prelim): 1 length of query: 622 length of database: 41,270,998 effective HSP length: 17 effective length of query: 605 effective length of database: 40,952,469 effective search space: 24776243745 effective search space used: 24776243745 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI947137|AI947137 bs35e06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs35e06 5', mRNA sequence. (631 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG8677-RA feature: mRNA loc=2L:join(21191080..21191530,21192180.... 1160 0.0 >CG8677-RA feature: mRNA loc=2L:join(21191080..21191530,21192180..21192361, 21192422..21192871,21192936..21196166,21196374..21198084, 21198203..21199781,21199835..21199938,21200353..21200810, 21202260..21203779);ID=FBan0008677;gene_id=FBgn0026577;ge ne_sym=CG8677;sym=CG8677;scaffold=AE003669;len=9686 Length = 9686 Score = 1160 bits (585), Expect = 0.0 Identities = 602/605 (99%), Gaps = 2/605 (0%) Strand = Plus / Minus Query: 27 aagctcctgtttcatggtacgtagagcaacctcctcttgctttcgcctttcagcttcctc 86 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3975 aagctcctgtttcatggtacgtagagcaacctcctcttgctttcgcctttcagcttcctc 3916 Query: 87 tttgatcttctgctgggcaatgcgcctagattggcgcacaggtgtctccgagtcgttggt 146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3915 tttgatcttctgctgggcaatgcgcctagattggcgcacaggtgtctccgagtcgttggt 3856 Query: 147 ctcaatgatattggtagtatccacctcacgcttctttctcggcccacgtccacgacccac 206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3855 ctcaatgatattggtagtatccacctcacgcttctttctcggcccacgtccacgacccac 3796 Query: 207 ctttggctttggctcctcgttgggctcttccttgatgggtttctcctcaggtttctttct 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3795 ctttggctttggctcctcgttgggctcttccttgatgggtttctcctcaggtttctttct 3736 Query: 267 attttctgggctttctggggctggatcgtctttagcttcagattttattttggttgaaat 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3735 attttctgggctttctggggctggatcgtctttagcttcagattttattttggttgaaat 3676 Query: 327 tttctcatcatcttcggattcctgcttcagctcagcattgacctctggctgcattttatc 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3675 tttctcatcatcttcggattcctgcttcagctcagcattgacctctggctgcattttatc 3616 Query: 387 cctggcccccacctcgagtcctttttggctgaggaagctcagagtgaatgacagcaggtc 446 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3615 cctgg-ccccacctcgagtcctttttggctgaggaagctcagagtgaatgacagcaggtc 3557 Query: 447 cacctctgcgaccagaacgacgggcagatccctccggtacaggcgattggtctttagctg 506 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3556 cacctctgcgaccagaacgacgggcagatccctccggtacaggcgattggtctttagctg 3497 Query: 507 aacgtaatgaatccttgacagacattgcaagtgggtcctcgacttcctcctgtatgtcct 566 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3496 aacgtaatgaatccttgacagacattgcaagtgggtcctcgacttcctcctgtatgtcct 3437 Query: 567 gctcgttatttgcgcttcaacttctcgcttacggctgacggaagcacttcagtaggggag 626 |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 3436 gctcgtta-ttgcgcttcaacttctcgcttacggctgacggaggcacttcagtaggggag 3378 Query: 627 gattc 631 ||||| Sbjct: 3377 gattc 3373 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,583 Number of Sequences: 18737 Number of extensions: 13583 Number of successful extensions: 310 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 307 Number of HSP's gapped (non-prelim): 1 length of query: 631 length of database: 41,270,998 effective HSP length: 17 effective length of query: 614 effective length of database: 40,952,469 effective search space: 25144815966 effective search space used: 25144815966 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI947138|AI947138 bs35e07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs35e07 5', mRNA sequence. (223 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4256 Number of Sequences: 18737 Number of extensions: 4256 Number of successful extensions: 356 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 356 Number of HSP's gapped (non-prelim): 0 length of query: 223 length of database: 41,270,998 effective HSP length: 16 effective length of query: 207 effective length of database: 40,971,206 effective search space: 8481039642 effective search space used: 8481039642 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI947144|AI947144 bs35f01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs35f01 5', mRNA sequence. (337 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31407-RA feature: mRNA loc=3R:complement(5848586..5849348);ID=... 611 e-174 >CG31407-RA feature: mRNA loc=3R:complement(5848586..5849348);ID=FBan0031407;gene_ id=FBgn0051407;gene_sym=CG31407;sym=CG31407;scaffold=AE0 03685;len=763 Length = 763 Score = 611 bits (308), Expect = e-174 Identities = 308/308 (100%) Strand = Plus / Plus Query: 7 ggcgggatatagttgcgagggttctctgcccaagatgtcgaccctgatgctcaagctaca 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 454 ggcgggatatagttgcgagggttctctgcccaagatgtcgaccctgatgctcaagctaca 513 Query: 67 gcaactggacgggtctccgcccatgatgacggggatcaggtatccccgagtgagctcggg 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 514 gcaactggacgggtctccgcccatgatgacggggatcaggtatccccgagtgagctcggg 573 Query: 127 ggagcaacgcgaacacatgccctccggcgatgtgtccttggacgcccgtctcatgctgcc 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 574 ggagcaacgcgaacacatgccctccggcgatgtgtccttggacgcccgtctcatgctgcc 633 Query: 187 ctttcctcgagtactatgaaaattctccatctctcaaattgtatcagacagtgaactgtt 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 634 ctttcctcgagtactatgaaaattctccatctctcaaattgtatcagacagtgaactgtt 693 Query: 247 ttgtggtttgtgcaacagaaaaaatctcgggttcaataaagtcgaggcaacggcttcgaa 306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 694 ttgtggtttgtgcaacagaaaaaatctcgggttcaataaagtcgaggcaacggcttcgaa 753 Query: 307 tttggatc 314 |||||||| Sbjct: 754 tttggatc 761 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5876 Number of Sequences: 18737 Number of extensions: 5876 Number of successful extensions: 380 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 379 Number of HSP's gapped (non-prelim): 1 length of query: 337 length of database: 41,270,998 effective HSP length: 16 effective length of query: 321 effective length of database: 40,971,206 effective search space: 13151757126 effective search space used: 13151757126 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI947153|AI947153 bs35f11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs35f11 5', mRNA sequence. (567 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG9129-RA feature: mRNA loc=3L:1231325..1232411;ID=FBan0009129;g... 1049 0.0 >CG9129-RA feature: mRNA loc=3L:1231325..1232411;ID=FBan0009129;gene_id=FBgn003519 6;gene_sym=CG9129;sym=CG9129;scaffold=AE003471;len=1087 Length = 1087 Score = 1049 bits (529), Expect = 0.0 Identities = 538/541 (99%) Strand = Plus / Minus Query: 27 ggtataaaaattattcaaatactttatttatagttaagatatgcgaatgattatcagttg 86 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1083 ggtataaaaattattcaaatactttatttatagttaagatatgcgaatgattatcagttg 1024 Query: 87 ctaggcgcatcccttgtcaaacaataaaaatgcttatggcaactaaatgagtacggaata 146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1023 ctaggcgcatcccttgtcaaacaataaaaatgcttatggcaactaaatgagtacggaata 964 Query: 147 taaaggctcgcagctgcatttcctactcatgtcttcttggctggcacggtcttgcaagga 206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 963 taaaggctcgcagctgcatttcctactcatgtcttcttggctggcacggtcttgcaagga 904 Query: 207 tcgcagggatcgaatggcgacgaacagggagcaggccaagtgggcgggcaaggacagcaa 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 903 tcgcagggatcgaatggcgacgaacagggagcaggccaagtgggcgggcaaggacagcaa 844 Query: 267 cagttgcagggatccttgcacactggtctctggacggggaaggaggataccacagagggc 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 843 cagttgcagggatccttgcacactggtctctggacggggaaggaggataccacagagggc 784 Query: 327 ccattgcacaccagtctcaggatcagcactatattgcctgtctgcatcttgcagaggttg 386 |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| Sbjct: 783 ccattgcacaccagtctcaggatcagcactatattgcccgtctgcattttgcagaggttg 724 Query: 387 aagagcggcagcatccgcttggtcagctctgaggtgggacaccactgttcgcgccgctcc 446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 723 aagagcggcagcatccgcttggtcagctctgaggtgggacaccactgttcgcgccgctcc 664 Query: 447 ctattcctctcgtagcacacacagtcattggccttcttgcagggacccctcagcttgggc 506 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 663 ctattcctctcgtagcacacacagtcattggccttcttgcaggggcccctcagcttgggc 604 Query: 507 attcgcgacaaatgggactcgacgttactctcccagtttatgttctgtgaatagaactcc 566 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 603 attcgcgacaaatgggactcgacgttactctcccagtttatgttctgtgaatagaactcc 544 Query: 567 t 567 | Sbjct: 543 t 543 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,194 Number of Sequences: 18737 Number of extensions: 12194 Number of successful extensions: 337 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 336 Number of HSP's gapped (non-prelim): 1 length of query: 567 length of database: 41,270,998 effective HSP length: 17 effective length of query: 550 effective length of database: 40,952,469 effective search space: 22523857950 effective search space used: 22523857950 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI947155|AI947155 bs35g01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs35g01 5', mRNA sequence. (101 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 0 Number of Sequences: 18737 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 101 length of database: 41,270,998 effective HSP length: 16 effective length of query: 85 effective length of database: 40,971,206 effective search space: 3482552510 effective search space used: 3482552510 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI947161|AI947161 bs35g07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs35g07 5', mRNA sequence. (97 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 0 Number of Sequences: 18737 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 97 length of database: 41,270,998 effective HSP length: 16 effective length of query: 81 effective length of database: 40,971,206 effective search space: 3318667686 effective search space used: 3318667686 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI947162|AI947162 bs35g08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs35g08 5', mRNA sequence. (420 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 0 Number of Sequences: 18737 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 420 length of database: 41,270,998 effective HSP length: 17 effective length of query: 403 effective length of database: 40,952,469 effective search space: 16503845007 effective search space used: 16503845007 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI947165|AI947165 bs35g11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs35g11 5', mRNA sequence. (619 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Pif2-RA feature: mRNA loc=3R:join(2374759..2374867,2374929..2375... 605 e-172 >Pif2-RA feature: mRNA loc=3R:join(2374759..2374867, 2374929..2375706);ID=FBan0031483;gene_id=FBgn0046873;gen e_sym=Pif2;sym=CG31483;scaffold=AE003674;len=887 Length = 887 Score = 605 bits (305), Expect = e-172 Identities = 305/305 (100%) Strand = Plus / Plus Query: 315 acgccgtgctgcaagtgttgcacaccctgctgcgtgccgtgttgcacaccctgctgcacc 374 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 320 acgccgtgctgcaagtgttgcacaccctgctgcgtgccgtgttgcacaccctgctgcacc 379 Query: 375 ccctgctgcactccctgttgcaccccttgctgcagtccgtgctgcggtccgtgctgcagc 434 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 380 ccctgctgcactccctgttgcaccccttgctgcagtccgtgctgcggtccgtgctgcagc 439 Query: 435 ccctgctgctctccttgcggagggtcaaagtgcaagtgatccacggcagcgaatacggat 494 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 440 ccctgctgctctccttgcggagggtcaaagtgcaagtgatccacggcagcgaatacggat 499 Query: 495 tcgttttcggaggcaggagctaggcgcaaatgccaccacaagttcgtcgagctcgttgga 554 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 500 tcgttttcggaggcaggagctaggcgcaaatgccaccacaagttcgtcgagctcgttgga 559 Query: 555 gagccgttggagcccacctgctattaccagctaaggcaatcatacacacgaaaagtcaac 614 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 560 gagccgttggagcccacctgctattaccagctaaggcaatcatacacacgaaaagtcaac 619 Query: 615 ggcag 619 ||||| Sbjct: 620 ggcag 624 Score = 496 bits (250), Expect = e-139 Identities = 250/250 (100%) Strand = Plus / Plus Query: 7 ggaaatgtcagcaaaaacacattttgtaggtaaatagtcacacggacacacacaaatcaa 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12 ggaaatgtcagcaaaaacacattttgtaggtaaatagtcacacggacacacacaaatcaa 71 Query: 67 attcaagccccgggctcgagatctctgacgggttcaagcacgaatcgaagatgtgcagcc 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 72 attcaagccccgggctcgagatctctgacgggttcaagcacgaatcgaagatgtgcagcc 131 Query: 127 cctgctgtggatcctgctgcggaccttgctgctccccctgctgcagcccttgttgtccac 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 132 cctgctgtggatcctgctgcggaccttgctgctccccctgctgcagcccttgttgtccac 191 Query: 187 cgtgctgcaatgactgctgcgggtcctgctgcagtccgtgttgcggaccctgttgcagcc 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 192 cgtgctgcaatgactgctgcgggtcctgctgcagtccgtgttgcggaccctgttgcagcc 251 Query: 247 cctgctgcgg 256 |||||||||| Sbjct: 252 cctgctgcgg 261 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,876 Number of Sequences: 18737 Number of extensions: 14876 Number of successful extensions: 412 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 387 Number of HSP's gapped (non-prelim): 18 length of query: 619 length of database: 41,270,998 effective HSP length: 17 effective length of query: 602 effective length of database: 40,952,469 effective search space: 24653386338 effective search space used: 24653386338 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI947169|AI947169 bs35h03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs35h03 5', mRNA sequence. (432 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32811-RA feature: mRNA loc=X:complement(1055535..1055776,10561... 482 e-135 >CG32811-RA feature: mRNA loc=X:complement(1055535..1055776, 1056117..1056333);ID=FBan0032811;gene_id=FBgn0052811;gen e_sym=CG32811;sym=CG32811;scaffold=AE003420;len=459 Length = 459 Score = 482 bits (243), Expect = e-135 Identities = 243/243 (100%) Strand = Plus / Minus Query: 143 ctaacgagtcccaaattctgtgctgtgaccactagtcacacctcgaaacacctcggaatt 202 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 459 ctaacgagtcccaaattctgtgctgtgaccactagtcacacctcgaaacacctcggaatt 400 Query: 203 gactttcgttatatcttccgtattgaagaaaaactcgagttccctatcgaccagaacttc 262 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 399 gactttcgttatatcttccgtattgaagaaaaactcgagttccctatcgaccagaacttc 340 Query: 263 cttctgcttcaccatgcgcaacgactctaccggtcttctcatcgcctcataatccggata 322 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 339 cttctgcttcaccatgcgcaacgactctaccggtcttctcatcgcctcataatccggata 280 Query: 323 ctctggttggtgtggcatctcatagagtccgttcggtggcacaatgaggtccatgctgag 382 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 279 ctctggttggtgtggcatctcatagagtccgttcggtggcacaatgaggtccatgctgag 220 Query: 383 ttc 385 ||| Sbjct: 219 ttc 217 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8736 Number of Sequences: 18737 Number of extensions: 8736 Number of successful extensions: 776 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 775 Number of HSP's gapped (non-prelim): 1 length of query: 432 length of database: 41,270,998 effective HSP length: 17 effective length of query: 415 effective length of database: 40,952,469 effective search space: 16995274635 effective search space used: 16995274635 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI947172|AI947172 bs35h07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs35h07 5', mRNA sequence. (495 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,434 Number of Sequences: 18737 Number of extensions: 10434 Number of successful extensions: 265 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 265 Number of HSP's gapped (non-prelim): 0 length of query: 495 length of database: 41,270,998 effective HSP length: 17 effective length of query: 478 effective length of database: 40,952,469 effective search space: 19575280182 effective search space used: 19575280182 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI947197|AI947197 bs36b12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs36b12 5', mRNA sequence. (624 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31286-RB feature: mRNA loc=3R:join(2466955..2467095,2467151..2... 1191 0.0 CG1315-RA feature: mRNA loc=3R:complement(2468133..2468975,24695... 601 e-171 CG31286-RC feature: mRNA loc=3R:join(2466955..2467095,2467151..2... 597 e-170 >CG31286-RB feature: mRNA loc=3R:join(2466955..2467095,2467151..2467288, 2467345..2467565,2467630..2467755,2467807..2468081, 2468137..2469071);ID=FBan0031286;gene_id=FBgn0051286;gene _sym=CG31286;sym=CG31286;scaffold=AE003674;len=1836 Length = 1836 Score = 1191 bits (601), Expect = 0.0 Identities = 613/617 (99%) Strand = Plus / Plus Query: 8 aaaagagggaaaacaaacaaaaagaagactgtgcgagtcgtcaggataatcgatatgtct 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 602 aaaagagggaaaacaaacaaaaagaagactgtgcgagtcgtcaggataatcgatatgtct 661 Query: 68 tattgttgtccattctttccttggtgtctactaattggcaaagttgatgtctactatctg 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 662 tattgttgtccattctttccttggtgtctactaattggcaaagttgatgtctactatctg 721 Query: 128 gaactagttagtcatagtcttattaataggaccaaaactatcctccatgccaaacgaaaa 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 722 gaactagttagtcatagtcttattaataggaccaaaactatcctccatgccaaacgaaaa 781 Query: 188 ttatttgtgtaagtcaaatatttgtatgctggacaaaatcaagcaatgtgtgttctatcg 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 782 ttatttgtgtaagtcaaatatttgtatgctggacaaaatcaagcaatgtgtgttctatcg 841 Query: 248 ccttggtttggtcattataaatgtgtatgtattatatatgtatgcataaacgtttttaag 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 842 ccttggtttggtcattataaatgtgtatgtattatatatgtatgcataaacgtttttaag 901 Query: 308 tttttcttcgttggcacatcgtaggcaccgaacgctcggacatgttccctgattcggacc 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 902 tttttcttcgttggcacatcgtaggcaccgaacgctcggacatgttccctgattcggacc 961 Query: 368 gcattgatggcgataaatccaccggcatccctgggcacataaccaccatggacgtccata 427 |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct: 962 gcattgatggcgataaatccaccggcatcctgcggcacatagccaccatggacgtccata 1021 Query: 428 gatacgagctgttcgttgtaaagagctcccacatccttcgccgcctttcgggcgatggca 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1022 gatacgagctgttcgttgtaaagagctcccacatccttcgccgcctttcgggcgatggca 1081 Query: 488 cggcaatagcctggggccagttccacggtgaccttcccggagacccgctgctcggccaac 547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1082 cggcaatagcctggggccagttccacggtgaccttcccggagacccgctgctcggccaac 1141 Query: 548 tcgatacatttacgggcataaattgcctcgggactgaaccagaagccattgtacacgtag 607 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1142 tcgatacatttacgggcataaattgcctcgggactgaaccagaagccattgtacacgtag 1201 Query: 608 tcggccatgcgatcccg 624 ||||||||||||||||| Sbjct: 1202 tcggccatgcgatcccg 1218 >CG1315-RA feature: mRNA loc=3R:complement(2468133..2468975,2469587..2469832, 2469939..2470123);ID=FBan0001315;gene_id=FBgn0026565;gene _sym=CG1315;sym=CG1315;scaffold=AE003674;len=1274 Length = 1274 Score = 601 bits (303), Expect = e-171 Identities = 315/319 (98%) Strand = Plus / Minus Query: 306 agtttttcttcgttggcacatcgtaggcaccgaacgctcggacatgttccctgattcgga 365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1272 agtttttcttcgttggcacatcgtaggcaccgaacgctcggacatgttccctgattcgga 1213 Query: 366 ccgcattgatggcgataaatccaccggcatccctgggcacataaccaccatggacgtcca 425 |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 1212 ccgcattgatggcgataaatccaccggcatcctgcggcacatagccaccatggacgtcca 1153 Query: 426 tagatacgagctgttcgttgtaaagagctcccacatccttcgccgcctttcgggcgatgg 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1152 tagatacgagctgttcgttgtaaagagctcccacatccttcgccgcctttcgggcgatgg 1093 Query: 486 cacggcaatagcctggggccagttccacggtgaccttcccggagacccgctgctcggcca 545 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1092 cacggcaatagcctggggccagttccacggtgaccttcccggagacccgctgctcggcca 1033 Query: 546 actcgatacatttacgggcataaattgcctcgggactgaaccagaagccattgtacacgt 605 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1032 actcgatacatttacgggcataaattgcctcgggactgaaccagaagccattgtacacgt 973 Query: 606 agtcggccatgcgatcccg 624 ||||||||||||||||||| Sbjct: 972 agtcggccatgcgatcccg 954 >CG31286-RC feature: mRNA loc=3R:join(2466955..2467095,2467151..2467288, 2467345..2467565, 2468137..2469071);ID=FBan0031286;gene_id=FBgn0051286;gen e_sym=CG31286;sym=CG31286;scaffold=AE003674;len=1435 Length = 1435 Score = 597 bits (301), Expect = e-170 Identities = 313/317 (98%) Strand = Plus / Plus Query: 308 tttttcttcgttggcacatcgtaggcaccgaacgctcggacatgttccctgattcggacc 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 501 tttttcttcgttggcacatcgtaggcaccgaacgctcggacatgttccctgattcggacc 560 Query: 368 gcattgatggcgataaatccaccggcatccctgggcacataaccaccatggacgtccata 427 |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct: 561 gcattgatggcgataaatccaccggcatcctgcggcacatagccaccatggacgtccata 620 Query: 428 gatacgagctgttcgttgtaaagagctcccacatccttcgccgcctttcgggcgatggca 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 621 gatacgagctgttcgttgtaaagagctcccacatccttcgccgcctttcgggcgatggca 680 Query: 488 cggcaatagcctggggccagttccacggtgaccttcccggagacccgctgctcggccaac 547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 681 cggcaatagcctggggccagttccacggtgaccttcccggagacccgctgctcggccaac 740 Query: 548 tcgatacatttacgggcataaattgcctcgggactgaaccagaagccattgtacacgtag 607 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 741 tcgatacatttacgggcataaattgcctcgggactgaaccagaagccattgtacacgtag 800 Query: 608 tcggccatgcgatcccg 624 ||||||||||||||||| Sbjct: 801 tcggccatgcgatcccg 817 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,041 Number of Sequences: 18737 Number of extensions: 16041 Number of successful extensions: 456 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 453 Number of HSP's gapped (non-prelim): 3 length of query: 624 length of database: 41,270,998 effective HSP length: 17 effective length of query: 607 effective length of database: 40,952,469 effective search space: 24858148683 effective search space used: 24858148683 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI947200|AI947200 bs36c04.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs36c04 5', mRNA sequence. (591 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG30497-RC feature: mRNA loc=2R:complement(2798651..2802821,2802... 609 e-173 CG30497-RB feature: mRNA loc=2R:complement(2798651..2802821,2818... 609 e-173 CG30497-RA feature: mRNA loc=2R:complement(2798651..2802821,2839... 609 e-173 >CG30497-RC feature: mRNA loc=2R:complement(2798651..2802821, 2802909..2803079);ID=FBan0030497;gene_id=FBgn0050497;gene _sym=CG30497;sym=CG30497;scaffold=AE003840;len=4342 Length = 4342 Score = 609 bits (307), Expect = e-173 Identities = 314/315 (99%), Gaps = 1/315 (0%) Strand = Plus / Plus Query: 277 gtgtctggtgtaccagaagttgctcaatgaaattcaatccacaaagcaaagttaaaccga 336 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3464 gtgtctggtgtaccagaagttgctcaatgaaattcaatccacaaagcaaagttaaaccga 3523 Query: 337 aataaattttaaagtaatgtgtagaacgaaatgtcatattttgtagaatattttcggtgt 396 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3524 aataaattttaaagtaatgtgtagaacgaaatgtcatattttgtagaatattttcggtgt 3583 Query: 397 gtcctgacaacagcaacatattatgttatgtaggtatgtgaatgattgattgagtgtatt 456 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3584 gtcctgacaacagcaacatattatgttatgtaggtatgtgaatgattgattgagtgtatt 3643 Query: 457 gttaaaaccagctggtgataattaatgaatgatatagacatgatatagatatgctctaga 516 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3644 gttaaaaccagctggtgataattaatgaatgatatagacatgatatagatatgctctaga 3703 Query: 517 caacaaatattaatagttcgaaacgaaacacttcacttcgtcgaaaaccattcaaggaat 576 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 3704 caacaaatattaatagttcgaaacgaaacacttcacttcgtcgaaaacca-tcaaggaat 3762 Query: 577 gttagattaatgtgt 591 ||||||||||||||| Sbjct: 3763 gttagattaatgtgt 3777 Score = 398 bits (201), Expect = e-110 Identities = 201/201 (100%) Strand = Plus / Plus Query: 55 tacggcatgcatatgtagcacgttaatttcgaattgacctttttgtatgccaagtgcaac 114 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3242 tacggcatgcatatgtagcacgttaatttcgaattgacctttttgtatgccaagtgcaac 3301 Query: 115 agacgaaggcggcgttttgggttccagtctagaaattccaagcaacaatctaattgcagg 174 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3302 agacgaaggcggcgttttgggttccagtctagaaattccaagcaacaatctaattgcagg 3361 Query: 175 ctgaaatgataatttaaagcgatgatatgtaaatattagtcaaattaatatgtggacgag 234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3362 ctgaaatgataatttaaagcgatgatatgtaaatattagtcaaattaatatgtggacgag 3421 Query: 235 gattcggaagtgtagaggatt 255 ||||||||||||||||||||| Sbjct: 3422 gattcggaagtgtagaggatt 3442 >CG30497-RB feature: mRNA loc=2R:complement(2798651..2802821, 2818936..2819617);ID=FBan0030497;gene_id=FBgn0050497;gene _sym=CG30497;sym=CG30497;scaffold=AE003840;len=4853 Length = 4853 Score = 609 bits (307), Expect = e-173 Identities = 314/315 (99%), Gaps = 1/315 (0%) Strand = Plus / Plus Query: 277 gtgtctggtgtaccagaagttgctcaatgaaattcaatccacaaagcaaagttaaaccga 336 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3975 gtgtctggtgtaccagaagttgctcaatgaaattcaatccacaaagcaaagttaaaccga 4034 Query: 337 aataaattttaaagtaatgtgtagaacgaaatgtcatattttgtagaatattttcggtgt 396 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4035 aataaattttaaagtaatgtgtagaacgaaatgtcatattttgtagaatattttcggtgt 4094 Query: 397 gtcctgacaacagcaacatattatgttatgtaggtatgtgaatgattgattgagtgtatt 456 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4095 gtcctgacaacagcaacatattatgttatgtaggtatgtgaatgattgattgagtgtatt 4154 Query: 457 gttaaaaccagctggtgataattaatgaatgatatagacatgatatagatatgctctaga 516 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4155 gttaaaaccagctggtgataattaatgaatgatatagacatgatatagatatgctctaga 4214 Query: 517 caacaaatattaatagttcgaaacgaaacacttcacttcgtcgaaaaccattcaaggaat 576 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 4215 caacaaatattaatagttcgaaacgaaacacttcacttcgtcgaaaacca-tcaaggaat 4273 Query: 577 gttagattaatgtgt 591 ||||||||||||||| Sbjct: 4274 gttagattaatgtgt 4288 Score = 398 bits (201), Expect = e-110 Identities = 201/201 (100%) Strand = Plus / Plus Query: 55 tacggcatgcatatgtagcacgttaatttcgaattgacctttttgtatgccaagtgcaac 114 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3753 tacggcatgcatatgtagcacgttaatttcgaattgacctttttgtatgccaagtgcaac 3812 Query: 115 agacgaaggcggcgttttgggttccagtctagaaattccaagcaacaatctaattgcagg 174 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3813 agacgaaggcggcgttttgggttccagtctagaaattccaagcaacaatctaattgcagg 3872 Query: 175 ctgaaatgataatttaaagcgatgatatgtaaatattagtcaaattaatatgtggacgag 234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3873 ctgaaatgataatttaaagcgatgatatgtaaatattagtcaaattaatatgtggacgag 3932 Query: 235 gattcggaagtgtagaggatt 255 ||||||||||||||||||||| Sbjct: 3933 gattcggaagtgtagaggatt 3953 >CG30497-RA feature: mRNA loc=2R:complement(2798651..2802821,2839376..2840786, 2842628..2843515);ID=FBan0030497;gene_id=FBgn0050497;gene _sym=CG30497;sym=CG30497;scaffold=AE003840;len=6470 Length = 6470 Score = 609 bits (307), Expect = e-173 Identities = 314/315 (99%), Gaps = 1/315 (0%) Strand = Plus / Plus Query: 277 gtgtctggtgtaccagaagttgctcaatgaaattcaatccacaaagcaaagttaaaccga 336 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5592 gtgtctggtgtaccagaagttgctcaatgaaattcaatccacaaagcaaagttaaaccga 5651 Query: 337 aataaattttaaagtaatgtgtagaacgaaatgtcatattttgtagaatattttcggtgt 396 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5652 aataaattttaaagtaatgtgtagaacgaaatgtcatattttgtagaatattttcggtgt 5711 Query: 397 gtcctgacaacagcaacatattatgttatgtaggtatgtgaatgattgattgagtgtatt 456 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5712 gtcctgacaacagcaacatattatgttatgtaggtatgtgaatgattgattgagtgtatt 5771 Query: 457 gttaaaaccagctggtgataattaatgaatgatatagacatgatatagatatgctctaga 516 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5772 gttaaaaccagctggtgataattaatgaatgatatagacatgatatagatatgctctaga 5831 Query: 517 caacaaatattaatagttcgaaacgaaacacttcacttcgtcgaaaaccattcaaggaat 576 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 5832 caacaaatattaatagttcgaaacgaaacacttcacttcgtcgaaaacca-tcaaggaat 5890 Query: 577 gttagattaatgtgt 591 ||||||||||||||| Sbjct: 5891 gttagattaatgtgt 5905 Score = 398 bits (201), Expect = e-110 Identities = 201/201 (100%) Strand = Plus / Plus Query: 55 tacggcatgcatatgtagcacgttaatttcgaattgacctttttgtatgccaagtgcaac 114 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5370 tacggcatgcatatgtagcacgttaatttcgaattgacctttttgtatgccaagtgcaac 5429 Query: 115 agacgaaggcggcgttttgggttccagtctagaaattccaagcaacaatctaattgcagg 174 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5430 agacgaaggcggcgttttgggttccagtctagaaattccaagcaacaatctaattgcagg 5489 Query: 175 ctgaaatgataatttaaagcgatgatatgtaaatattagtcaaattaatatgtggacgag 234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5490 ctgaaatgataatttaaagcgatgatatgtaaatattagtcaaattaatatgtggacgag 5549 Query: 235 gattcggaagtgtagaggatt 255 ||||||||||||||||||||| Sbjct: 5550 gattcggaagtgtagaggatt 5570 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,893 Number of Sequences: 18737 Number of extensions: 13893 Number of successful extensions: 278 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 266 Number of HSP's gapped (non-prelim): 9 length of query: 591 length of database: 41,270,998 effective HSP length: 17 effective length of query: 574 effective length of database: 40,952,469 effective search space: 23506717206 effective search space used: 23506717206 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI947244|AI947244 bs36g05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs36g05 5', mRNA sequence. (466 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value RfaBp-RA feature: mRNA loc=4:join(1084380..1084490,1084552..1084... 607 e-173 >RfaBp-RA feature: mRNA loc=4:join(1084380..1084490,1084552..1084651, 1085324..1085353,1085408..1092573,1092629..1092849, 1092907..1095025,1095084..1095204, 1095260..1095672);ID=FBan0011064;gene_id=FBgn0016724;gene_ sym=RfaBp;sym=CG11064;scaffold=AE003846;len=10281 Length = 10281 Score = 607 bits (306), Expect = e-173 Identities = 323/331 (97%) Strand = Plus / Minus Query: 136 tttttattaatttttcgttttacttagtttnnnnnnngatttttcctcacgaagggattc 195 |||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 10272 tttttattaatttttcgttttacttagtttaaaaaaagatttttcctcacgaagggattc 10213 Query: 196 gataaaacatgtaagcccagtttaggcagattttgcctttttgttcgcaacaaatgttga 255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10212 gataaaacatgtaagcccagtttaggcagattttgcctttttgttcgcaacaaatgttga 10153 Query: 256 tgacttaatgacgcacttatgttggccgtgcaatccatgaatcggaagacagcgacagtc 315 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10152 tgacttaatgacgcacttatgttggccgtgcaatccatgaatcggaagacagcgacagtc 10093 Query: 316 actgacgatttccgtcttaaagagagtatctgccagcgatgatgtaatctgattcaacat 375 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10092 actgacgatttccgtcttaaagagagtatctgccagcgatgatgtaatctgattcaacat 10033 Query: 376 tttcttttggtccgaagcttttaatttttcaaagttttgtgtggcaaacacccagccacc 435 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10032 tttcttttggtccgaagcttttaatttttcaaagttttgtgtggcaaacacccagccacc 9973 Query: 436 gttatttaggacaaagtcaatgcccatgtcg 466 |||||| |||||||||||||||||||||||| Sbjct: 9972 gttattaaggacaaagtcaatgcccatgtcg 9942 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7101 Number of Sequences: 18737 Number of extensions: 7101 Number of successful extensions: 152 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 149 Number of HSP's gapped (non-prelim): 2 length of query: 466 length of database: 41,270,998 effective HSP length: 17 effective length of query: 449 effective length of database: 40,952,469 effective search space: 18387658581 effective search space used: 18387658581 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI947248|AI947248 bs36g09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs36g09 5', mRNA sequence. (641 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,881 Number of Sequences: 18737 Number of extensions: 14881 Number of successful extensions: 235 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 235 Number of HSP's gapped (non-prelim): 0 length of query: 641 length of database: 41,270,998 effective HSP length: 17 effective length of query: 624 effective length of database: 40,952,469 effective search space: 25554340656 effective search space used: 25554340656 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI947249|AI947249 bs36g10.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs36g10 5', mRNA sequence. (436 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31820-RA feature: mRNA loc=2L:complement(15983852..15984199,15... 757 0.0 >CG31820-RA feature: mRNA loc=2L:complement(15983852..15984199, 15984251..15984363);ID=FBan0031820;gene_id=FBgn0051820;g ene_sym=CG31820;sym=CG31820;scaffold=AE003649;len=461 Length = 461 Score = 757 bits (382), Expect = 0.0 Identities = 402/411 (97%) Strand = Plus / Plus Query: 8 cataaaccaaaagtacgaaaaaatttcgtgtttcaacatttttggaaatctttactcaag 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 30 cataaaccaaaagtacgaaaaaatttcgtgtttcaacatttttggaaatctttactcaag 89 Query: 68 catttctcttgccttaaacaaaatttataacctatcctcccgaagatgtgttgccaagga 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 90 catttctcttgccttaaacaaaatttataacctatcctcccgaagatgtgttgccaagga 149 Query: 128 gcttgtggatcggtatcctatgccctggcttatggccccgtcggacccgctctgccagcc 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 150 gcttgtggatcggtatcctatgccctggcttatggccccgtcggacccgctctgccagcc 209 Query: 188 atgaactacaataactgctgctgtggacccaatcctccctgtggtccctggacatgtcct 247 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 210 atgaactataataactgctgctgtggacccaatcctccctgtggtccctggacatgtcct 269 Query: 248 cctaacaggtgctgttgcgccggcgaatggggttgctttgggcctttttactgagaaacc 307 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 270 cctaacaggtgctgttgtgccggcgaatggggttgctttgggcctttttactgagaaacc 329 Query: 308 caaggtacgacaattcctgaagaaaacgacgtgaaannnnnnngtgcttttggtttgaac 367 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 330 caaggtacgacaattcctgaagaaaacgacgtgaaatttttttgtgcttttggtttgaac 389 Query: 368 cacattttcacttacacaatggttcgagcttttcaataaattaatgtactt 418 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 390 cacattttcacttacacaatggttcgagcttttcaataaattaatgtactt 440 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9751 Number of Sequences: 18737 Number of extensions: 9751 Number of successful extensions: 714 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 712 Number of HSP's gapped (non-prelim): 1 length of query: 436 length of database: 41,270,998 effective HSP length: 17 effective length of query: 419 effective length of database: 40,952,469 effective search space: 17159084511 effective search space used: 17159084511 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI947250|AI947250 bs36g11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs36g11 5', mRNA sequence. (76 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 0 Number of Sequences: 18737 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 76 length of database: 41,270,998 effective HSP length: 16 effective length of query: 60 effective length of database: 40,971,206 effective search space: 2458272360 effective search space used: 2458272360 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AW943511|AW943511 LD40262.3prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD40262 3, mRNA sequence. (451 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG30020-RA feature: mRNA loc=2R:join(5951544..5952095,5952165..5... 549 e-156 >CG30020-RA feature: mRNA loc=2R:join(5951544..5952095,5952165..5952264, 5952327..5952743,5952805..5952954,5953012..5953125, 5953200..5953550,5954340..5955071,5955142..5955321, 5955382..5955477,5955592..5955627,5955716..5955988, 5956137..5957046, 5957107..5957920);ID=FBan0030020;gene_id=FBgn0050020;gene _sym=CG30020;sym=CG30020;scaffold=AE003828;len=4725 Length = 4725 Score = 549 bits (277), Expect = e-156 Identities = 280/281 (99%) Strand = Plus / Minus Query: 171 taattatacatatatataatggggaattttaaacattagatgtgaagcgtttctctttgg 230 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 4556 taattatacatatatataatggagaattttaaacattagatgtgaagcgtttctctttgg 4497 Query: 231 ccaatacagagccagctggtggagattgcctcaatcatgcttgggaatcgaatggattaa 290 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4496 ccaatacagagccagctggtggagattgcctcaatcatgcttgggaatcgaatggattaa 4437 Query: 291 ctactgacaccttgagacccgttgcggattgttatgtttaaggcgataccttaagttgcc 350 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4436 ctactgacaccttgagacccgttgcggattgttatgtttaaggcgataccttaagttgcc 4377 Query: 351 atttgggcattgctacttttggatcctcataatacattgaaaatttcaccgaagtctatt 410 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4376 atttgggcattgctacttttggatcctcataatacattgaaaatttcaccgaagtctatt 4317 Query: 411 tgtcaataagtgatcggtcgtctgtatttcaactaattttg 451 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 4316 tgtcaataagtgatcggtcgtctgtatttcaactaattttg 4276 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9780 Number of Sequences: 18737 Number of extensions: 9780 Number of successful extensions: 1137 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1135 Number of HSP's gapped (non-prelim): 2 length of query: 451 length of database: 41,270,998 effective HSP length: 17 effective length of query: 434 effective length of database: 40,952,469 effective search space: 17773371546 effective search space used: 17773371546 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE661986|BE661986 bs01b08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs01b08 5', mRNA sequence. (82 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 353 Number of Sequences: 18737 Number of extensions: 353 Number of successful extensions: 69 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69 Number of HSP's gapped (non-prelim): 0 length of query: 82 length of database: 41,270,998 effective HSP length: 16 effective length of query: 66 effective length of database: 40,971,206 effective search space: 2704099596 effective search space used: 2704099596 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662004|BE662004 bs02f11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs02f11 5', mRNA sequence. (215 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5146 Number of Sequences: 18737 Number of extensions: 5146 Number of successful extensions: 415 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 415 Number of HSP's gapped (non-prelim): 0 length of query: 215 length of database: 41,270,998 effective HSP length: 16 effective length of query: 199 effective length of database: 40,971,206 effective search space: 8153269994 effective search space used: 8153269994 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662008|BE662008 bs03d04.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs03d04 5', mRNA sequence. (363 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8554 Number of Sequences: 18737 Number of extensions: 8554 Number of successful extensions: 1144 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1144 Number of HSP's gapped (non-prelim): 0 length of query: 363 length of database: 41,270,998 effective HSP length: 17 effective length of query: 346 effective length of database: 40,952,469 effective search space: 14169554274 effective search space used: 14169554274 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662011|BE662011 bs04c08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs04c08 5', mRNA sequence. (287 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6148 Number of Sequences: 18737 Number of extensions: 6148 Number of successful extensions: 510 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 510 Number of HSP's gapped (non-prelim): 0 length of query: 287 length of database: 41,270,998 effective HSP length: 16 effective length of query: 271 effective length of database: 40,971,206 effective search space: 11103196826 effective search space used: 11103196826 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662015|BE662015 bs06a07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs06a07 5', mRNA sequence. (71 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 447 Number of Sequences: 18737 Number of extensions: 447 Number of successful extensions: 92 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 92 Number of HSP's gapped (non-prelim): 0 length of query: 71 length of database: 41,270,998 effective HSP length: 16 effective length of query: 55 effective length of database: 40,971,206 effective search space: 2253416330 effective search space used: 2253416330 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 183 (363.3 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662018|BE662018 bs06c11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs06c11 5', mRNA sequence. (88 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 552 Number of Sequences: 18737 Number of extensions: 552 Number of successful extensions: 146 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 146 Number of HSP's gapped (non-prelim): 0 length of query: 88 length of database: 41,270,998 effective HSP length: 16 effective length of query: 72 effective length of database: 40,971,206 effective search space: 2949926832 effective search space used: 2949926832 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662020|BE662020 bs06g03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs06g03 5', mRNA sequence. (382 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31201-RA feature: mRNA loc=3R:complement(16470526..16470675,16... 476 e-134 >CG31201-RA feature: mRNA loc=3R:complement(16470526..16470675,16470734..16470996, 16471053..16471278,16471332..16471533,16471589..16471842, 16472066..16472269,16472335..16472565,16472623..16472786, 16472850..16473239,16473301..16473517,16473748..16473908, 16474215..16474453);ID=FBan0031201;gene_id=FBgn0051201;ge ne_sym=CG31201;sym=CG31201;scaffold=AE003731;len=2701 Length = 2701 Score = 476 bits (240), Expect = e-134 Identities = 252/256 (98%) Strand = Plus / Minus Query: 127 accatttctgaactcatcctgatcggtggggtaacccaacttcatgagcagttccttgac 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1009 accatttctgaactcatcctgatcggtggggtaacccaacttcatgagcagttccttgac 950 Query: 187 ggacattttttccggagaaaataaacgaagcccggttatattggcctcactgtacttgta 246 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 949 ggccattttttccggagaaaataaacgaagcccggttatattggcctcactgtacttgta 890 Query: 247 ctcctccaaatcgaaagagtgaaagtccaggttgccgataatgtacttgtaatcctcgtt 306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 889 ctcctccaaatcgaaagagtgaaagtccaggttgccgataatgtacttgtaatcctcgtt 830 Query: 307 gatgatgcccacttgttgcgcctggttaaggaactatggcatcgttacggtggagcccac 366 ||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||| Sbjct: 829 gatgatgcccacttgttgcgcctggttaaggaactctggcatcgtttcgctggagcccac 770 Query: 367 gaccacaattcgatta 382 |||||||||||||||| Sbjct: 769 gaccacaattcgatta 754 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8334 Number of Sequences: 18737 Number of extensions: 8334 Number of successful extensions: 673 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 671 Number of HSP's gapped (non-prelim): 2 length of query: 382 length of database: 41,270,998 effective HSP length: 17 effective length of query: 365 effective length of database: 40,952,469 effective search space: 14947651185 effective search space used: 14947651185 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662031|BE662031 bs11c05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs11c05 5', mRNA sequence. (325 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value BEST:GH09876-RA feature: mRNA loc=2L:complement(18971695..189720... 428 e-119 >BEST:GH09876-RA feature: mRNA loc=2L:complement(18971695..18972074,18972220..18973104, 18973685..18973795, 18973862..18974013);ID=FBan0010650;gene_id=FBgn0046302;ge ne_sym=BEST:GH09876;sym=CG10650;scaffold=AE003661;len=152 8 Length = 1528 Score = 428 bits (216), Expect = e-119 Identities = 246/256 (96%) Strand = Plus / Minus Query: 70 attaaaatgatttatttgggattattgaagtgttcttaaaatgcttcatctcctataatt 129 ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct: 1518 attaaaatgatttatttgggattatggaagtgttcttaaaatgcttcagctcctataatt 1459 Query: 130 agggtatgtctttttgtctgttgctttgtaatagttaacattacttatagacccaggcac 189 ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 1458 aggttatgtctttttgtctgttgctttgtaatagttaacattactcatagacccaggcac 1399 Query: 190 ccggtaatttgattggatcatccaactacctggaggtggttggattacagggcactgcgt 249 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1398 ccggtaatttgattggatcatccaactacgtggaggtggttggattacagggcactgcgt 1339 Query: 250 aaagcgatcaccactcccgtcaaaaggccgaccacgcccacattcctgaatgcccctgct 309 | |||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||| Sbjct: 1338 agagcgatcaccactcccgtcagaaggccgaccacgcccacattcctgagtgcgcctgct 1279 Query: 310 tcattgaagggtacct 325 ||||||||||||||| Sbjct: 1278 ccattgaagggtacct 1263 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4972 Number of Sequences: 18737 Number of extensions: 4972 Number of successful extensions: 432 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 431 Number of HSP's gapped (non-prelim): 1 length of query: 325 length of database: 41,270,998 effective HSP length: 16 effective length of query: 309 effective length of database: 40,971,206 effective search space: 12660102654 effective search space used: 12660102654 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662032|BE662032 bs11e10.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs11e10 5', mRNA sequence. (88 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 0 Number of Sequences: 18737 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 88 length of database: 41,270,998 effective HSP length: 16 effective length of query: 72 effective length of database: 40,971,206 effective search space: 2949926832 effective search space used: 2949926832 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662038|BE662038 bs15a11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs15a11 5', mRNA sequence. (260 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG5938-RD feature: mRNA loc=3R:join(23089794..23090098,23090478.... 454 e-127 CG5938-RB feature: mRNA loc=3R:join(23089794..23090098,23090478.... 454 e-127 >CG5938-RD feature: mRNA loc=3R:join(23089794..23090098,23090478..23090872, 23091380..23091590, 23091657..23092505);ID=FBan0005938;gene_id=FBgn0039506;g ene_sym=CG5938;sym=CG5938;scaffold=AE003760;len=1760 Length = 1760 Score = 454 bits (229), Expect = e-127 Identities = 247/253 (97%) Strand = Plus / Minus Query: 8 gcggacgctccagctgtaccgagtgggaggtcaaaacatgttgctgtctgccgtcgctgg 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 487 gcggacgctccagctgtaccgagtgggaggtcaaaacatgttgctgtctgccgtcgctgg 428 Query: 68 cggggatcctgggcggccctttagagctgtccttcaatcgcagattgacactgctgcttc 127 ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 427 cggggatcctgggtgttcctttagagctgtccttcaatcgcagattgacactgctgcttc 368 Query: 128 cgccataaaatgtcgacgtttgtcgcgcttcccagtgatgcgattatgacgtctggcctc 187 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 367 cgccataaaatgtcgacgtctgtcgcgcttcccagtgatgcgattatgacgtctggcctc 308 Query: 188 ctcttgcagtgtatttcgcaatcacttttgttgcacgtctaactgttctggtgtaagcac 247 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 307 ctcttgcagtgtatttcgcaatcacttttgttgcacgttcaactgttctggtgtaagcac 248 Query: 248 gatcacttttctt 260 ||||||||||||| Sbjct: 247 gatcacttttctt 235 >CG5938-RB feature: mRNA loc=3R:join(23089794..23090098,23090478..23090872, 23091380..23091590, 23091657..23092233);ID=FBan0005938;gene_id=FBgn0039506;g ene_sym=CG5938;sym=CG5938;scaffold=AE003760;len=1488 Length = 1488 Score = 454 bits (229), Expect = e-127 Identities = 247/253 (97%) Strand = Plus / Minus Query: 8 gcggacgctccagctgtaccgagtgggaggtcaaaacatgttgctgtctgccgtcgctgg 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 487 gcggacgctccagctgtaccgagtgggaggtcaaaacatgttgctgtctgccgtcgctgg 428 Query: 68 cggggatcctgggcggccctttagagctgtccttcaatcgcagattgacactgctgcttc 127 ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 427 cggggatcctgggtgttcctttagagctgtccttcaatcgcagattgacactgctgcttc 368 Query: 128 cgccataaaatgtcgacgtttgtcgcgcttcccagtgatgcgattatgacgtctggcctc 187 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 367 cgccataaaatgtcgacgtctgtcgcgcttcccagtgatgcgattatgacgtctggcctc 308 Query: 188 ctcttgcagtgtatttcgcaatcacttttgttgcacgtctaactgttctggtgtaagcac 247 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 307 ctcttgcagtgtatttcgcaatcacttttgttgcacgttcaactgttctggtgtaagcac 248 Query: 248 gatcacttttctt 260 ||||||||||||| Sbjct: 247 gatcacttttctt 235 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5121 Number of Sequences: 18737 Number of extensions: 5121 Number of successful extensions: 426 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 424 Number of HSP's gapped (non-prelim): 2 length of query: 260 length of database: 41,270,998 effective HSP length: 16 effective length of query: 244 effective length of database: 40,971,206 effective search space: 9996974264 effective search space used: 9996974264 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662040|BE662040 bs15g06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs15g06 5', mRNA sequence. (58 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 0 Number of Sequences: 18737 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 58 length of database: 41,270,998 effective HSP length: 15 effective length of query: 43 effective length of database: 40,989,943 effective search space: 1762567549 effective search space used: 1762567549 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 183 (363.3 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662053|BE662053 bs17d10.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs17d10 5', mRNA sequence. (289 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG3222-RA feature: mRNA loc=3L:9556517..9557874;ID=FBan0003222;g... 484 e-136 >CG3222-RA feature: mRNA loc=3L:9556517..9557874;ID=FBan0003222;gene_id=FBgn003601 4;gene_sym=CG3222;sym=CG3222;scaffold=AE003551;len=1358 Length = 1358 Score = 484 bits (244), Expect = e-136 Identities = 261/269 (97%) Strand = Plus / Minus Query: 21 aagaaactttaaaaacgttgaattttatttttcagattacaaagtaattgcattcatttt 80 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1352 aagaaactttaaaaacgttgaattttatttttcagattacaaagtaattgcattcatttt 1293 Query: 81 ctctccgagctcttaagcttaaattttaaattgnnnnnnncatatataaagacattgatc 140 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 1292 ctctccgagctcttaagcttaaattttaaattgaaaaaaacatatataaagacattgatc 1233 Query: 141 ggcggatctacaactcgaatatggaccgggtcatgtccatgtagctattgcggcgtatta 200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1232 ggcggatctacaactcgaatatggaccgggtcatgtccatgtagctattgcggcgtatta 1173 Query: 201 gattagattgcaccacatttatgttatccgccgtccgtttcctcatcatgttgttggccg 260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1172 gattagattgcaccacatttatgttatccgccgtccgtttcctcatcatgttgttggccg 1113 Query: 261 agcggaatgattcctcaaagtttaggacc 289 ||||| ||||||||||||||||||||||| Sbjct: 1112 agcggtatgattcctcaaagtttaggacc 1084 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6183 Number of Sequences: 18737 Number of extensions: 6183 Number of successful extensions: 462 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 461 Number of HSP's gapped (non-prelim): 1 length of query: 289 length of database: 41,270,998 effective HSP length: 16 effective length of query: 273 effective length of database: 40,971,206 effective search space: 11185139238 effective search space used: 11185139238 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662054|BE662054 bs17f10.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs17f10 5', mRNA sequence. (252 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1479 Number of Sequences: 18737 Number of extensions: 1479 Number of successful extensions: 89 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 89 Number of HSP's gapped (non-prelim): 0 length of query: 252 length of database: 41,270,998 effective HSP length: 16 effective length of query: 236 effective length of database: 40,971,206 effective search space: 9669204616 effective search space used: 9669204616 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662062|BE662062 bs19a07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs19a07 5', mRNA sequence. (68 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1097 Number of Sequences: 18737 Number of extensions: 1097 Number of successful extensions: 289 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 289 Number of HSP's gapped (non-prelim): 0 length of query: 68 length of database: 41,270,998 effective HSP length: 16 effective length of query: 52 effective length of database: 40,971,206 effective search space: 2130502712 effective search space used: 2130502712 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 183 (363.3 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662066|BE662066 bs19f04.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs19f04 5', mRNA sequence. (500 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7670 Number of Sequences: 18737 Number of extensions: 7670 Number of successful extensions: 129 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 129 Number of HSP's gapped (non-prelim): 0 length of query: 500 length of database: 41,270,998 effective HSP length: 17 effective length of query: 483 effective length of database: 40,952,469 effective search space: 19780042527 effective search space used: 19780042527 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662069|BE662069 bs19g07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs19g07 5', mRNA sequence. (196 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3791 Number of Sequences: 18737 Number of extensions: 3791 Number of successful extensions: 290 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 290 Number of HSP's gapped (non-prelim): 0 length of query: 196 length of database: 41,270,998 effective HSP length: 16 effective length of query: 180 effective length of database: 40,971,206 effective search space: 7374817080 effective search space used: 7374817080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662071|BE662071 bs20a06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs20a06 5', mRNA sequence. (421 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,434 Number of Sequences: 18737 Number of extensions: 13434 Number of successful extensions: 1382 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1382 Number of HSP's gapped (non-prelim): 0 length of query: 421 length of database: 41,270,998 effective HSP length: 17 effective length of query: 404 effective length of database: 40,952,469 effective search space: 16544797476 effective search space used: 16544797476 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662081|BE662081 bs20d04.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs20d04 5', mRNA sequence. (60 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 687 Number of Sequences: 18737 Number of extensions: 687 Number of successful extensions: 145 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 145 Number of HSP's gapped (non-prelim): 0 length of query: 60 length of database: 41,270,998 effective HSP length: 15 effective length of query: 45 effective length of database: 40,989,943 effective search space: 1844547435 effective search space used: 1844547435 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 183 (363.3 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662082|BE662082 bs20d08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs20d08 5', mRNA sequence. (199 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9752 Number of Sequences: 18737 Number of extensions: 9752 Number of successful extensions: 2266 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2266 Number of HSP's gapped (non-prelim): 0 length of query: 199 length of database: 41,270,998 effective HSP length: 16 effective length of query: 183 effective length of database: 40,971,206 effective search space: 7497730698 effective search space used: 7497730698 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662084|BE662084 bs20e01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs20e01 5', mRNA sequence. (170 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4910 Number of Sequences: 18737 Number of extensions: 4910 Number of successful extensions: 393 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 393 Number of HSP's gapped (non-prelim): 0 length of query: 170 length of database: 41,270,998 effective HSP length: 16 effective length of query: 154 effective length of database: 40,971,206 effective search space: 6309565724 effective search space used: 6309565724 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662091|BE662091 bs21a03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs21a03 5', mRNA sequence. (56 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 0 Number of Sequences: 18737 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 56 length of database: 41,270,998 effective HSP length: 15 effective length of query: 41 effective length of database: 40,989,943 effective search space: 1680587663 effective search space used: 1680587663 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 183 (363.3 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662094|BE662094 bs22b09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs22b09 5', mRNA sequence. (168 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3333 Number of Sequences: 18737 Number of extensions: 3333 Number of successful extensions: 282 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 282 Number of HSP's gapped (non-prelim): 0 length of query: 168 length of database: 41,270,998 effective HSP length: 16 effective length of query: 152 effective length of database: 40,971,206 effective search space: 6227623312 effective search space used: 6227623312 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662100|BE662100 bs23c05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs23c05 5', mRNA sequence. (188 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4018 Number of Sequences: 18737 Number of extensions: 4018 Number of successful extensions: 340 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 340 Number of HSP's gapped (non-prelim): 0 length of query: 188 length of database: 41,270,998 effective HSP length: 16 effective length of query: 172 effective length of database: 40,971,206 effective search space: 7047047432 effective search space used: 7047047432 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662106|BE662106 bs23e10.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs23e10 5', mRNA sequence. (331 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG12263-RA feature: mRNA loc=2R:join(13490150..13490595,13490654... 531 e-150 >CG12263-RA feature: mRNA loc=2R:join(13490150..13490595,13490654..13491297, 13491355..13491538,13491608..13493216,13493293..13493741, 13493801..13494053);ID=FBan0012263;gene_id=FBgn0034346;ge ne_sym=CG12263;sym=CG12263;scaffold=AE003799;len=3585 Length = 3585 Score = 531 bits (268), Expect = e-150 Identities = 286/292 (97%) Strand = Plus / Minus Query: 40 caaaactagtggcagttcgatagcgtaatatactgtgcacgctgagcagaatagcttcca 99 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 2883 caaaactagtggcagttcgatagcgtaatatactgtgcacgctgagcagaatagctccca 2824 Query: 100 cggccacgcaaacaaccaagccgatggaagcacgcggttcgagaagaactatcattacca 159 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2823 cggccacgcaaacaaccaagccgatggaagcacgcggttcgagaagaactatcattacca 2764 Query: 160 gggccaagaaaacgccaaatgcaatgacaatggaggagtaaacggatgctagtacgtaga 219 ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| Sbjct: 2763 gggccaagaaaacgccaaatgcaatgacaatggaggagtaaacggttgctagtccgtaga 2704 Query: 220 ccaccgggatgtgactacgccgctcgtcggcatcgccctcgtacattcgcttcattttcc 279 ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct: 2703 ccaccgggatgtgactacgccgctcgtcgtcatcgccctcgtacatccgcttcattttcc 2644 Query: 280 taaagatttacggaacaatgctttcgtttccattgatggtcactgtatggga 331 ||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2643 taaagatttccggaacaatgctttcgtttccattgatggtcactgtatggga 2592 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6744 Number of Sequences: 18737 Number of extensions: 6744 Number of successful extensions: 501 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 499 Number of HSP's gapped (non-prelim): 2 length of query: 331 length of database: 41,270,998 effective HSP length: 16 effective length of query: 315 effective length of database: 40,971,206 effective search space: 12905929890 effective search space used: 12905929890 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662112|BE662112 bs23h04.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs23h04 5', mRNA sequence. (414 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7727 Number of Sequences: 18737 Number of extensions: 7727 Number of successful extensions: 563 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 563 Number of HSP's gapped (non-prelim): 0 length of query: 414 length of database: 41,270,998 effective HSP length: 17 effective length of query: 397 effective length of database: 40,952,469 effective search space: 16258130193 effective search space used: 16258130193 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662113|BE662113 bs23h05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs23h05 5', mRNA sequence. (474 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32652-RA feature: mRNA loc=X:complement(12141720..12141970,121... 426 e-119 >CG32652-RA feature: mRNA loc=X:complement(12141720..12141970,12142025..12142249, 12142304..12142408);ID=FBan0032652;gene_id=FBgn0052652;g ene_sym=CG32652;sym=CG32652;scaffold=AE003489;len=581 Length = 581 Score = 426 bits (215), Expect = e-119 Identities = 230/234 (98%), Gaps = 2/234 (0%) Strand = Plus / Plus Query: 241 attcccatcccatcccaaattatttaatgcgcttatccaaaatgcaaactaatgatgatc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 attcccatcccatcccaaattatttaatgcgcttatccaaaatgcaaactaatgatgatc 60 Query: 301 gttccgcctacactgccttaattaacagtctgaacaagctaggatagttgaaatggtgtt 360 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 61 gttccgcctacactgccttaattaa--gtctgaacaagctaggatagttgaaatggtgtt 118 Query: 361 caattcgatggtaccagtcccgttggacgagaggattgcatcggtttggatataaatgtt 420 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct: 119 caattcgatggtaccagtcccgttggacgagaggattgcatcgttttggatacaaatgtt 178 Query: 421 gcgcttacaatcaatgcaagccatagaagcctactcttcatacactatgttaat 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 179 gcgcttacaatcaatgcaagccatagaagcctactcttcatacactatgttaat 232 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9418 Number of Sequences: 18737 Number of extensions: 9418 Number of successful extensions: 211 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 209 Number of HSP's gapped (non-prelim): 2 length of query: 474 length of database: 41,270,998 effective HSP length: 17 effective length of query: 457 effective length of database: 40,952,469 effective search space: 18715278333 effective search space used: 18715278333 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662129|BE662129 bs24e04.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs24e04 5', mRNA sequence. (260 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6513 Number of Sequences: 18737 Number of extensions: 6513 Number of successful extensions: 571 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 571 Number of HSP's gapped (non-prelim): 0 length of query: 260 length of database: 41,270,998 effective HSP length: 16 effective length of query: 244 effective length of database: 40,971,206 effective search space: 9996974264 effective search space used: 9996974264 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662131|BE662131 bs24f01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs24f01 5', mRNA sequence. (57 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 672 Number of Sequences: 18737 Number of extensions: 672 Number of successful extensions: 177 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 177 Number of HSP's gapped (non-prelim): 0 length of query: 57 length of database: 41,270,998 effective HSP length: 15 effective length of query: 42 effective length of database: 40,989,943 effective search space: 1721577606 effective search space used: 1721577606 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 183 (363.3 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662132|BE662132 bs24f02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs24f02 5', mRNA sequence. (189 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8404 Number of Sequences: 18737 Number of extensions: 8404 Number of successful extensions: 2176 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2176 Number of HSP's gapped (non-prelim): 0 length of query: 189 length of database: 41,270,998 effective HSP length: 16 effective length of query: 173 effective length of database: 40,971,206 effective search space: 7088018638 effective search space used: 7088018638 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662157|BE662157 bs25b07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs25b07 5', mRNA sequence. (130 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2894 Number of Sequences: 18737 Number of extensions: 2894 Number of successful extensions: 244 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 244 Number of HSP's gapped (non-prelim): 0 length of query: 130 length of database: 41,270,998 effective HSP length: 16 effective length of query: 114 effective length of database: 40,971,206 effective search space: 4670717484 effective search space used: 4670717484 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662161|BE662161 bs25e02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs25e02 5', mRNA sequence. (102 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 690 Number of Sequences: 18737 Number of extensions: 690 Number of successful extensions: 166 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 166 Number of HSP's gapped (non-prelim): 0 length of query: 102 length of database: 41,270,998 effective HSP length: 16 effective length of query: 86 effective length of database: 40,971,206 effective search space: 3523523716 effective search space used: 3523523716 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662162|BE662162 bs25e08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs25e08 5', mRNA sequence. (178 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2909 Number of Sequences: 18737 Number of extensions: 2909 Number of successful extensions: 226 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 226 Number of HSP's gapped (non-prelim): 0 length of query: 178 length of database: 41,270,998 effective HSP length: 16 effective length of query: 162 effective length of database: 40,971,206 effective search space: 6637335372 effective search space used: 6637335372 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662169|BE662169 bs26e07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs26e07 5', mRNA sequence. (372 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9196 Number of Sequences: 18737 Number of extensions: 9196 Number of successful extensions: 728 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 728 Number of HSP's gapped (non-prelim): 0 length of query: 372 length of database: 41,270,998 effective HSP length: 17 effective length of query: 355 effective length of database: 40,952,469 effective search space: 14538126495 effective search space used: 14538126495 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662172|BE662172 bs27d02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs27d02 5', mRNA sequence. (52 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 0 Number of Sequences: 18737 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 52 length of database: 41,270,998 effective HSP length: 15 effective length of query: 37 effective length of database: 40,989,943 effective search space: 1516627891 effective search space used: 1516627891 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 183 (363.3 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662179|BE662179 bs28b05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs28b05 5', mRNA sequence. (102 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 0 Number of Sequences: 18737 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 102 length of database: 41,270,998 effective HSP length: 16 effective length of query: 86 effective length of database: 40,971,206 effective search space: 3523523716 effective search space used: 3523523716 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662186|BE662186 bs28e01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs28e01 5', mRNA sequence. (372 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31913-RA feature: mRNA loc=2L:5776246..5777108;ID=FBan0031913;... 628 e-180 >CG31913-RA feature: mRNA loc=2L:5776246..5777108;ID=FBan0031913;gene_id=FBgn00519 13;gene_sym=CG31913;sym=CG31913;scaffold=AE003611;len=86 3 Length = 863 Score = 628 bits (317), Expect = e-180 Identities = 339/345 (98%), Gaps = 1/345 (0%) Strand = Plus / Plus Query: 28 aaattctaaaagtgatttcttgccgactaagaggccgccatgccaaccttaaagttgcgt 87 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 51 aaattctaaaagtgatttcttgccgactaagaggccgccatgccaaccttaaagttgcgt 110 Query: 88 atcggtctgccctcgaagcgaacgatgggcagcatatgcatctgcggagcactcgcctcc 147 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 111 atcggtctgccctcgaagcgaacgatgggcagcatatgcatctgcggagcactcgcctcc 170 Query: 148 atctcgggcctggcctacatgcgctggcgacttgaggaccgtgtacgccagacggagttc 207 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 171 atctcgggcctggcctacatgcgctggcgacttgaggaccgtgtacgccagacggagttc 230 Query: 208 tatcaattggccattcagcagctacgccagcacagtggagcggtcggtctgctgggcgag 267 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 231 tatcagttggccatccagcagctacgccagcacagtggagcggtcggtctgctgggcgag 290 Query: 268 cccatcaaggagttgggctttaatctgttcaacgagaagaatcgctgtgacgaggacaag 327 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 291 cccatcaaggagtcgggctttaatctgtccaacgagaagaatcgctgtgacgaggacaag 350 Query: 328 gcccaactgcagtttccatgtccagggtcccaaggacagggggac 372 ||||| |||||| |||||||||||||||||||||||||||||||| Sbjct: 351 gcccagctgcag-ttccatgtccagggtcccaaggacagggggac 394 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8540 Number of Sequences: 18737 Number of extensions: 8540 Number of successful extensions: 661 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 659 Number of HSP's gapped (non-prelim): 1 length of query: 372 length of database: 41,270,998 effective HSP length: 17 effective length of query: 355 effective length of database: 40,952,469 effective search space: 14538126495 effective search space used: 14538126495 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662188|BE662188 bs28e06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs28e06 5', mRNA sequence. (444 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG10732-RA feature: mRNA loc=3L:join(13400175..13400556,13400868... 815 0.0 >CG10732-RA feature: mRNA loc=3L:join(13400175..13400556,13400868..13401024, 13401257..13401654,13401781..13401873,13401936..13403466, 13403580..13403848,13403910..13404451,13404842..13405952, 13406011..13406613);ID=FBan0010732;gene_id=FBgn0036365;ge ne_sym=CG10732;sym=CG10732;scaffold=AE003538;len=5086 Length = 5086 Score = 815 bits (411), Expect = 0.0 Identities = 414/415 (99%) Strand = Plus / Plus Query: 30 ctggcaccggatcacgaactaatcgagtacattatcaaacgcattcgcaatcagacgcac 89 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4550 ctggcaccggatcacgaactaatcgagtacattatcaaacgcattcgcaatcagacgcac 4609 Query: 90 aacaacaccgtcatcaatgactccctactggcagaggtatcaaagctgacggccactgct 149 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4610 aacaacaccgtcatcaatgactccctactggcagaggtatcaaagctgacggccactgct 4669 Query: 150 gcccagaattcgaccgccagctcgccactaatttcgcccaaacgcatatatgccaagatc 209 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4670 gcccagaattcgaccgccagctcgccactaatttcgcccaaacgcatatatgccaagatc 4729 Query: 210 aagaagatggacataccacgactgcgggacgagttcctgctttggtaccgttcttatttg 269 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 4730 aagaagatggacataccacgacagcgggacgagttcctgctttggtaccgttcttatttg 4789 Query: 270 gagcagctgtttgtggtggaacagccgcaggatagctgcaagaccaagtcgaaggtgaca 329 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4790 gagcagctgtttgtggtggaacagccgcaggatagctgcaagaccaagtcgaaggtgaca 4849 Query: 330 ccttctggagccagtccggccaagctgaagaaccagcgtgtgcgcaaacagtcccaatcc 389 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4850 ccttctggagccagtccggccaagctgaagaaccagcgtgtgcgcaaacagtcccaatcc 4909 Query: 390 cagtcgcaggactcgaataacgatgcagacttggccgaggcggaccaaaagaacg 444 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4910 cagtcgcaggactcgaataacgatgcagacttggccgaggcggaccaaaagaacg 4964 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,123 Number of Sequences: 18737 Number of extensions: 12123 Number of successful extensions: 976 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 975 Number of HSP's gapped (non-prelim): 1 length of query: 444 length of database: 41,270,998 effective HSP length: 17 effective length of query: 427 effective length of database: 40,952,469 effective search space: 17486704263 effective search space used: 17486704263 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662190|BE662190 bs28f02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs28f02 5', mRNA sequence. (411 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,018 Number of Sequences: 18737 Number of extensions: 11018 Number of successful extensions: 806 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 806 Number of HSP's gapped (non-prelim): 0 length of query: 411 length of database: 41,270,998 effective HSP length: 17 effective length of query: 394 effective length of database: 40,952,469 effective search space: 16135272786 effective search space used: 16135272786 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662195|BE662195 bs28h08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs28h08 5', mRNA sequence. (364 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG30293-RA feature: mRNA loc=2R:complement(16106722..16107691,16... 674 0.0 >CG30293-RA feature: mRNA loc=2R:complement(16106722..16107691,16107750..16108017, 16108069..16108245, 16108298..16108507);ID=FBan0030293;gene_id=FBgn0050293;ge ne_sym=CG30293;sym=CG30293;scaffold=AE003452;len=1625 Length = 1625 Score = 674 bits (340), Expect = 0.0 Identities = 346/348 (99%) Strand = Plus / Plus Query: 17 ctgggcgacatgaacgccctcacaacagagaagccgaccacagaagcatccggactgtgc 76 |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1266 ctgggcgacaagaacggcctcacaacagagaagccgaccacagaagcatccggactgtgc 1325 Query: 77 ccacatgatggctttagccgcgatggttgggattgccgattgtatcatgagtgccgcgat 136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1326 ccacatgatggctttagccgcgatggttgggattgccgattgtatcatgagtgccgcgat 1385 Query: 137 ggagagaggatctattacgagtgcctcgagggtcagtatttcgacgagaaccagatcgtg 196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1386 ggagagaggatctattacgagtgcctcgagggtcagtatttcgacgagaaccagatcgtg 1445 Query: 197 tgccgcccagccgctgaggtcaagtgtgatcagaactttgtcatttggcgaccgggaatg 256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1446 tgccgcccagccgctgaggtcaagtgtgatcagaactttgtcatttggcgaccgggaatg 1505 Query: 257 cccgtttatagctacgacaacatgccactaaacctaaagatcgtggagtaggtccataaa 316 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1506 cccgtttatagctacgacaacatgccactaaacctaaagatcgtggagtaggtccataaa 1565 Query: 317 aatacacaaaccccatgacatttttctggacaaataaaatctagcact 364 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1566 aatacacaaaccccatgacatttttctggacaaataaaatctagcact 1613 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7282 Number of Sequences: 18737 Number of extensions: 7282 Number of successful extensions: 512 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 511 Number of HSP's gapped (non-prelim): 1 length of query: 364 length of database: 41,270,998 effective HSP length: 17 effective length of query: 347 effective length of database: 40,952,469 effective search space: 14210506743 effective search space used: 14210506743 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662196|BE662196 bs29d03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs29d03 5', mRNA sequence. (484 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32652-RA feature: mRNA loc=X:complement(12141720..12141970,121... 448 e-125 >CG32652-RA feature: mRNA loc=X:complement(12141720..12141970,12142025..12142249, 12142304..12142408);ID=FBan0032652;gene_id=FBgn0052652;g ene_sym=CG32652;sym=CG32652;scaffold=AE003489;len=581 Length = 581 Score = 448 bits (226), Expect = e-125 Identities = 244/249 (97%), Gaps = 2/249 (0%) Strand = Plus / Plus Query: 236 attcccatcccatcccaaattatttaatgcgcttatccaaaatgcaaactaatgatgatc 295 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 attcccatcccatcccaaattatttaatgcgcttatccaaaatgcaaactaatgatgatc 60 Query: 296 gttccgcctacactgccttaattaacagtctgaacaagctaggatagttgaaatggtgtt 355 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 61 gttccgcctacactgccttaattaa--gtctgaacaagctaggatagttgaaatggtgtt 118 Query: 356 caattcgatggtaccagtcccgttggacgagaggattgcatcggtttggatataaatgtt 415 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct: 119 caattcgatggtaccagtcccgttggacgagaggattgcatcgttttggatacaaatgtt 178 Query: 416 gcgcttacaatcaatgcatgccatagaagcctactcttcatacactatgttaataagcca 475 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 179 gcgcttacaatcaatgcaagccatagaagcctactcttcatacactatgttaataagcca 238 Query: 476 tcttatgat 484 ||||||||| Sbjct: 239 tcttatgat 247 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9434 Number of Sequences: 18737 Number of extensions: 9434 Number of successful extensions: 240 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 238 Number of HSP's gapped (non-prelim): 2 length of query: 484 length of database: 41,270,998 effective HSP length: 17 effective length of query: 467 effective length of database: 40,952,469 effective search space: 19124803023 effective search space used: 19124803023 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662197|BE662197 bs29f04.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs29f04 5', mRNA sequence. (96 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1497 Number of Sequences: 18737 Number of extensions: 1497 Number of successful extensions: 428 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 428 Number of HSP's gapped (non-prelim): 0 length of query: 96 length of database: 41,270,998 effective HSP length: 16 effective length of query: 80 effective length of database: 40,971,206 effective search space: 3277696480 effective search space used: 3277696480 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662200|BE662200 bs30d11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs30d11 5', mRNA sequence. (201 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4687 Number of Sequences: 18737 Number of extensions: 4687 Number of successful extensions: 384 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 384 Number of HSP's gapped (non-prelim): 0 length of query: 201 length of database: 41,270,998 effective HSP length: 16 effective length of query: 185 effective length of database: 40,971,206 effective search space: 7579673110 effective search space used: 7579673110 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662202|BE662202 bs31a06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs31a06 5', mRNA sequence. (60 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1228 Number of Sequences: 18737 Number of extensions: 1228 Number of successful extensions: 360 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 360 Number of HSP's gapped (non-prelim): 0 length of query: 60 length of database: 41,270,998 effective HSP length: 15 effective length of query: 45 effective length of database: 40,989,943 effective search space: 1844547435 effective search space used: 1844547435 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 183 (363.3 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662204|BE662204 bs31a10.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs31a10 5', mRNA sequence. (485 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value TotA-RA feature: mRNA loc=3R:join(16696775..16696838,16696925..1... 767 0.0 >TotA-RA feature: mRNA loc=3R:join(16696775..16696838, 16696925..16697444);ID=FBan0031509;gene_id=FBgn0028396;g ene_sym=TotA;sym=CG31509;scaffold=AE003732;len=584 Length = 584 Score = 767 bits (387), Expect = 0.0 Identities = 390/391 (99%) Strand = Plus / Minus Query: 8 tttcactcaaatattaaaacaatattaaccagtgaataattgagcaagctttgaacccaa 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 455 tttcactcaaatattaaaacaatattaaccagtgaataattgagcaagctttgaacccaa 396 Query: 68 ttcttcaaagaatccagttgcaaggcccttcacacctggagatacaatctttccaacgat 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 395 ttcttcaaagaatccagttgcaaggcccttcacacctggagatacaatctttccaacgat 336 Query: 128 cctcgcctttcgacctccctgaatcggaactccatcgattataatggcatccgtatgctc 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 335 cctcgcctttcgacctccctgaatcggaactccatcgattataatggcatccgtatgctc 276 Query: 188 gttgacgaacttatcgatactctcccgttcctcaggggtcaaactgggatataaacgcct 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 275 gttgacgaacttatcgatactctcccgttcctcaggggtcaaactgggatataaacgcct 216 Query: 248 atagatgtcaagtagttcctgggtgctattgattttggagtcatcgtcctgggcgttttt 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 215 atagatgtcaagtagttcctgggtgctattgattttggagtcatcgtcctgggcgttttt 156 Query: 308 gataatttcagcaattctaaggctgtcagcctcacgatcttcgtcggaatagcccatgca 367 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 155 gataatttcagcaattctaaggttgtcagcctcacgatcttcgtcggaatagcccatgca 96 Query: 368 tagaggactaatcagcagcagtgcaaagcac 398 ||||||||||||||||||||||||||||||| Sbjct: 95 tagaggactaatcagcagcagtgcaaagcac 65 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,580 Number of Sequences: 18737 Number of extensions: 10580 Number of successful extensions: 257 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 256 Number of HSP's gapped (non-prelim): 1 length of query: 485 length of database: 41,270,998 effective HSP length: 17 effective length of query: 468 effective length of database: 40,952,469 effective search space: 19165755492 effective search space used: 19165755492 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662206|BE662206 bs31c07.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs31c07 5', mRNA sequence. (67 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 0 Number of Sequences: 18737 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 67 length of database: 41,270,998 effective HSP length: 16 effective length of query: 51 effective length of database: 40,971,206 effective search space: 2089531506 effective search space used: 2089531506 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 183 (363.3 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662207|BE662207 bs31d06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs31d06 5', mRNA sequence. (96 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 0 Number of Sequences: 18737 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 96 length of database: 41,270,998 effective HSP length: 16 effective length of query: 80 effective length of database: 40,971,206 effective search space: 3277696480 effective search space used: 3277696480 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662219|BE662219 bs31g11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs31g11 5', mRNA sequence. (211 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2604 Number of Sequences: 18737 Number of extensions: 2604 Number of successful extensions: 243 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 243 Number of HSP's gapped (non-prelim): 0 length of query: 211 length of database: 41,270,998 effective HSP length: 16 effective length of query: 195 effective length of database: 40,971,206 effective search space: 7989385170 effective search space used: 7989385170 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662223|BE662223 bs32a11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs32a11 5', mRNA sequence. (79 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 204 Number of Sequences: 18737 Number of extensions: 204 Number of successful extensions: 47 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47 Number of HSP's gapped (non-prelim): 0 length of query: 79 length of database: 41,270,998 effective HSP length: 16 effective length of query: 63 effective length of database: 40,971,206 effective search space: 2581185978 effective search space used: 2581185978 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662230|BE662230 bs32e10.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs32e10 5', mRNA sequence. (64 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 0 Number of Sequences: 18737 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 64 length of database: 41,270,998 effective HSP length: 16 effective length of query: 48 effective length of database: 40,971,206 effective search space: 1966617888 effective search space used: 1966617888 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 183 (363.3 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662242|BE662242 bs32h12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs32h12 5', mRNA sequence. (83 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 0 Number of Sequences: 18737 Number of extensions: 0 Number of successful extensions: 0 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 0 length of query: 83 length of database: 41,270,998 effective HSP length: 16 effective length of query: 67 effective length of database: 40,971,206 effective search space: 2745070802 effective search space used: 2745070802 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662243|BE662243 bs33a04.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs33a04 5', mRNA sequence. (381 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG33285-RA feature: mRNA loc=3L:complement(21005539..21006278);I... 605 e-172 >CG33285-RA feature: mRNA loc=3L:complement(21005539..21006278);ID=FBan0033285;gen e_id=FBgn0053285;gene_sym=CG33285;sym=CG33285;scaffold=A E003593;len=740 Length = 740 Score = 605 bits (305), Expect = e-172 Identities = 355/374 (94%) Strand = Plus / Plus Query: 8 cagtttcggaacttcgtctaaatttgtgcgnnnnnnnggggggaaaaggcagaatgtaga 67 |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct: 6 cagtttcggaacttcgtctaaatttgtgcgtttttttggggggaaaaggcagaaggtaga 65 Query: 68 tcaatggatgcttcactcaaagaggagtatgctcgcgtttcgcatcccaatctccagcgt 127 ||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||| Sbjct: 66 tcaatggatgcttcagtcaaagaggagtatgctcgtgtttcgcatcccaatcgccagcgt 125 Query: 128 gaattggccaagaagcgtcttctcttctgggcaggacgtctacagatgatgcctcacgag 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 126 gaattggccaagaagcgtcttctcttctgggcaggacgtctacagatgatgcctcacgag 185 Query: 188 gtggaagggatgtctgatggggagctcaaccttatgtttgaaaaccttaagaggaaggaa 247 |||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||| Sbjct: 186 gtggaagggatgtctgatggggagctcaaccttaggtttgaaaacgtaaagaggaaggaa 245 Query: 248 gcatcatttgagcagcgaaaaattgactttgagcgctgggcagaactcaaccagttgaga 307 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 246 gcagcatttgagcagcgaaaaattgactttgagcgctgggcagaactcaaccagttgaga 305 Query: 308 tacctcatgtacgaagagcagagaaagtacaatgagcgttactgacaccgaggacccttc 367 |||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||| | Sbjct: 306 tacctcatgtacgaagagcagagaaagtacaatgagcgttacggacacggtggaccctcc 365 Query: 368 atctggcgcatcct 381 |||||||||||||| Sbjct: 366 atctggcgcatcct 379 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7067 Number of Sequences: 18737 Number of extensions: 7067 Number of successful extensions: 500 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 498 Number of HSP's gapped (non-prelim): 1 length of query: 381 length of database: 41,270,998 effective HSP length: 17 effective length of query: 364 effective length of database: 40,952,469 effective search space: 14906698716 effective search space used: 14906698716 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662245|BE662245 bs33h09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs33h09 5', mRNA sequence. (272 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4953 Number of Sequences: 18737 Number of extensions: 4953 Number of successful extensions: 383 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 383 Number of HSP's gapped (non-prelim): 0 length of query: 272 length of database: 41,270,998 effective HSP length: 16 effective length of query: 256 effective length of database: 40,971,206 effective search space: 10488628736 effective search space used: 10488628736 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662246|BE662246 bs33h12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs33h12 5', mRNA sequence. (328 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6500 Number of Sequences: 18737 Number of extensions: 6500 Number of successful extensions: 480 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 480 Number of HSP's gapped (non-prelim): 0 length of query: 328 length of database: 41,270,998 effective HSP length: 16 effective length of query: 312 effective length of database: 40,971,206 effective search space: 12783016272 effective search space used: 12783016272 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662247|BE662247 bs34c06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs34c06 5', mRNA sequence. (382 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG8584-RA feature: mRNA loc=2R:complement(3761439..3762541);ID=F... 515 e-146 >CG8584-RA feature: mRNA loc=2R:complement(3761439..3762541);ID=FBan0008584;gene_ id=FBgn0033322;gene_sym=CG8584;sym=CG8584;scaffold=AE003 836;len=1103 Length = 1103 Score = 515 bits (260), Expect = e-146 Identities = 296/308 (96%) Strand = Plus / Plus Query: 75 ccagcagagctcttaaattgactccaatgtaaggacgggatataatgtaagacagggagc 134 |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 60 ccagcagaactcttaaattgactccaatgtaaggacgggatataatgtaagacagcgagc 119 Query: 135 cgactccactagcctgtgcattgaaaaagaaaggactggggtgcaaaatggtcagtctgc 194 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || Sbjct: 120 cgactccactagcctgtgcattgaaaaagaaaggactcgggtgcaaaatggtcagtcagc 179 Query: 195 tgcccgcacagtctgctgatttagacaagctcgctccatcaggtcagtttgccgctgctg 254 |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 180 tgcccgcacagtctgctgatttagacaagctcgctccatcaggtcagtttgccgtcgctg 239 Query: 255 tggtcagcaatttccagagatcgtgttctagctccgatcgccgggggctcgtattgatcc 314 ||||||||||| ||||||||||| |||| ||||||||||||||||||||||| ||||||| Sbjct: 240 tggtcagcaatctccagagatcgcgttcgagctccgatcgccgggggctcgtcttgatcc 299 Query: 315 tgctctccagcgacctgggcacctacatcagacgcctgctggcccgtgtggcggaaaatg 374 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct: 300 tgctctccagcgacctgggcacctacatcagacgcctgctggcccgtgtggcggagaagg 359 Query: 375 catgtacg 382 |||||||| Sbjct: 360 catgtacg 367 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6731 Number of Sequences: 18737 Number of extensions: 6731 Number of successful extensions: 442 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 441 Number of HSP's gapped (non-prelim): 1 length of query: 382 length of database: 41,270,998 effective HSP length: 17 effective length of query: 365 effective length of database: 40,952,469 effective search space: 14947651185 effective search space used: 14947651185 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662253|BE662253 bs35b10.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs35b10 5', mRNA sequence. (51 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5680 Number of Sequences: 18737 Number of extensions: 5680 Number of successful extensions: 2669 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2669 Number of HSP's gapped (non-prelim): 0 length of query: 51 length of database: 41,270,998 effective HSP length: 15 effective length of query: 36 effective length of database: 40,989,943 effective search space: 1475637948 effective search space used: 1475637948 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 183 (363.3 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662256|BE662256 bs36a03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs36a03 5', mRNA sequence. (402 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG9016-RA feature: mRNA loc=2L:complement(5915119..5915694,59157... 517 e-146 CG9016-RB feature: mRNA loc=2L:complement(5915119..5915694,59157... 478 e-134 >CG9016-RA feature: mRNA loc=2L:complement(5915119..5915694, 5915749..5915861);ID=FBan0009016;gene_id=FBgn0031751;gen e_sym=CG9016;sym=CG9016;scaffold=AE003611;len=689 Length = 689 Score = 517 bits (261), Expect = e-146 Identities = 316/334 (94%), Gaps = 9/334 (2%) Strand = Plus / Plus Query: 69 attaaaattcaaaggcctaatatcatacaaaagtgtcagtgagcagtatggacggcttct 128 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 75 attaaaattcaaaggcctaatatcatacaaaagtgtcagtgagcagcatggacggcttct 134 Query: 129 acagtaacagcaacagcaacagttgcagttccaacaacggaggctactgctcgcagggtt 188 |||| |||||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct: 135 acag------caacagcaacagttgcag---caacaacggcggctactgctcgcagggtt 185 Query: 189 cgcgaagaggcaactgcggatcgtgtggcaactgccccggtggccactgcccccaaatgg 248 ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 186 cgcgaagtggcaactgcggatcgtgtggcaactgccccggtggccactgcccccgaatgg 245 Query: 249 aggcgggtggtagtagctacggcgctcgaggaatgagccaaccgggttgtcctggcggca 308 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 246 aggcgggtggtagtagctacggcgctcgaggaatgagccagccgggttgtcctggcggca 305 Query: 309 actgttgtcccggtggaaggtgatcgcccggaaagtcgcgcttcaatccatactggcagt 368 ||||||||||||| |||||||| ||| ||||||||||||||||||||||| ||||||||| Sbjct: 306 actgttgtcccggcggaaggtgttcggccggaaagtcgcgcttcaatccagactggcagt 365 Query: 369 atggtggacgctagcaccaaagagttagcgcttc 402 |||||||||||||||||||||||||||||||||| Sbjct: 366 atggtggacgctagcaccaaagagttagcgcttc 399 >CG9016-RB feature: mRNA loc=2L:complement(5915119..5915694, 5915754..5915861);ID=FBan0009016;gene_id=FBgn0031751;gen e_sym=CG9016;sym=CG9016;scaffold=AE003611;len=684 Length = 684 Score = 478 bits (241), Expect = e-134 Identities = 311/334 (93%), Gaps = 14/334 (4%) Strand = Plus / Plus Query: 69 attaaaattcaaaggcctaatatcatacaaaagtgtcagtgagcagtatggacggcttct 128 |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct: 75 attaaaattcaaaggcctaatatcatacaaaagt-----tgagcagcatggacggcttct 129 Query: 129 acagtaacagcaacagcaacagttgcagttccaacaacggaggctactgctcgcagggtt 188 |||| |||||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct: 130 acag------caacagcaacagttgcag---caacaacggcggctactgctcgcagggtt 180 Query: 189 cgcgaagaggcaactgcggatcgtgtggcaactgccccggtggccactgcccccaaatgg 248 ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 181 cgcgaagtggcaactgcggatcgtgtggcaactgccccggtggccactgcccccgaatgg 240 Query: 249 aggcgggtggtagtagctacggcgctcgaggaatgagccaaccgggttgtcctggcggca 308 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 241 aggcgggtggtagtagctacggcgctcgaggaatgagccagccgggttgtcctggcggca 300 Query: 309 actgttgtcccggtggaaggtgatcgcccggaaagtcgcgcttcaatccatactggcagt 368 ||||||||||||| |||||||| ||| ||||||||||||||||||||||| ||||||||| Sbjct: 301 actgttgtcccggcggaaggtgttcggccggaaagtcgcgcttcaatccagactggcagt 360 Query: 369 atggtggacgctagcaccaaagagttagcgcttc 402 |||||||||||||||||||||||||||||||||| Sbjct: 361 atggtggacgctagcaccaaagagttagcgcttc 394 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,922 Number of Sequences: 18737 Number of extensions: 12922 Number of successful extensions: 2496 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2487 Number of HSP's gapped (non-prelim): 6 length of query: 402 length of database: 41,270,998 effective HSP length: 17 effective length of query: 385 effective length of database: 40,952,469 effective search space: 15766700565 effective search space used: 15766700565 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662257|BE662257 bs36a12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs36a12 5', mRNA sequence. (367 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32192-RB feature: mRNA loc=3L:join(17989196..17989568,17989642... 595 e-169 CG32192-RA feature: mRNA loc=3L:join(17989196..17989568,17989651... 595 e-169 >CG32192-RB feature: mRNA loc=3L:join(17989196..17989568,17989642..17989723, 17989807..17989931);ID=FBan0032192;gene_id=FBgn0052192;g ene_sym=CG32192;sym=CG32192;scaffold=AE003522;len=580 Length = 580 Score = 595 bits (300), Expect = e-169 Identities = 336/351 (95%) Strand = Plus / Plus Query: 17 cgttcaaaattcgtgttcacaaaaacataaattttcagnnnnnnnnncttccctcaaaaa 76 |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 14 cgttcaaaattcgtgttcacaaaaacataaattttcagtttttttttcttccctcaaaaa 73 Query: 77 attttaagaaatatttaaaccagcttcacgatgtgttgtaagtcgtgcgaagaacaacca 136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 74 attttaagaaatatttaaaccagcttcacgatgtgttgtaagtcgtgcgaagaacaacca 133 Query: 137 gcatcatgctgctcgactatgtatgcatttttctgcctgggagcacgattctttatgttt 196 |||||||||||||||||| | ||||||||||||||| |||||||| |||||||||||||| Sbjct: 134 gcatcatgctgctcgactttctatgcatttttctgcatgggagcaggattctttatgttt 193 Query: 197 agcttctcgctgcgcaatgttattatatcagaagagtctattaccattatggattggttt 256 ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 194 agcttctcgctgcacaatgtaattatatcagaagagtctattaccattatggattggttt 253 Query: 257 ctgcacatacatggcactgatttgacggaaaaacagcttttgatattgtacgcttcggat 316 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 254 ctgcacatacatggcactgatttgacggaaaaacagcttttgatattgtacgcttcggat 313 Query: 317 ttaatttttgcctttacgtatgtcctcgcaggagttttgctagcttgggga 367 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 314 ttaatttttgcctttacgtatgtcctcgcaggagttttgctagcttgggga 364 >CG32192-RA feature: mRNA loc=3L:join(17989196..17989568,17989651..17989723, 17989807..17989931);ID=FBan0032192;gene_id=FBgn0052192;g ene_sym=CG32192;sym=CG32192;scaffold=AE003522;len=571 Length = 571 Score = 595 bits (300), Expect = e-169 Identities = 336/351 (95%) Strand = Plus / Plus Query: 17 cgttcaaaattcgtgttcacaaaaacataaattttcagnnnnnnnnncttccctcaaaaa 76 |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 14 cgttcaaaattcgtgttcacaaaaacataaattttcagtttttttttcttccctcaaaaa 73 Query: 77 attttaagaaatatttaaaccagcttcacgatgtgttgtaagtcgtgcgaagaacaacca 136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 74 attttaagaaatatttaaaccagcttcacgatgtgttgtaagtcgtgcgaagaacaacca 133 Query: 137 gcatcatgctgctcgactatgtatgcatttttctgcctgggagcacgattctttatgttt 196 |||||||||||||||||| | ||||||||||||||| |||||||| |||||||||||||| Sbjct: 134 gcatcatgctgctcgactttctatgcatttttctgcatgggagcaggattctttatgttt 193 Query: 197 agcttctcgctgcgcaatgttattatatcagaagagtctattaccattatggattggttt 256 ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 194 agcttctcgctgcacaatgtaattatatcagaagagtctattaccattatggattggttt 253 Query: 257 ctgcacatacatggcactgatttgacggaaaaacagcttttgatattgtacgcttcggat 316 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 254 ctgcacatacatggcactgatttgacggaaaaacagcttttgatattgtacgcttcggat 313 Query: 317 ttaatttttgcctttacgtatgtcctcgcaggagttttgctagcttgggga 367 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 314 ttaatttttgcctttacgtatgtcctcgcaggagttttgctagcttgggga 364 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8433 Number of Sequences: 18737 Number of extensions: 8433 Number of successful extensions: 662 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 658 Number of HSP's gapped (non-prelim): 4 length of query: 367 length of database: 41,270,998 effective HSP length: 17 effective length of query: 350 effective length of database: 40,952,469 effective search space: 14333364150 effective search space used: 14333364150 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662262|BE662262 bs36g01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs36g01 5', mRNA sequence. (361 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6536 Number of Sequences: 18737 Number of extensions: 6536 Number of successful extensions: 476 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 476 Number of HSP's gapped (non-prelim): 0 length of query: 361 length of database: 41,270,998 effective HSP length: 17 effective length of query: 344 effective length of database: 40,952,469 effective search space: 14087649336 effective search space used: 14087649336 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG638240|BG638240 LD20735.3prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD20735 3 similar to brat: FBan0010719 'transcription factor' located on: 2L 37C3-37C5;: 04/10/2001, mRNA sequence. (330 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value brat-RC feature: mRNA loc=2L:join(19145650..19145790,19146178..1... 527 e-149 brat-RB feature: mRNA loc=2L:join(19136658..19136838,19144168..1... 527 e-149 brat-RA feature: mRNA loc=2L:join(19111889..19112359,19123877..1... 527 e-149 >brat-RC feature: mRNA loc=2L:join(19145650..19145790, 19146178..19150655);ID=FBan0010719;gene_id=FBgn0010300;g ene_sym=brat;sym=CG10719;scaffold=AE003661;len=4619 Length = 4619 Score = 527 bits (266), Expect = e-149 Identities = 269/270 (99%) Strand = Plus / Plus Query: 1 caacacatccgccaatggatctccgccacgttgcaccgcctgcaatagcaagtgcagcga 60 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 696 caacacatccgccaatggatctccgccacgttgcaccgcctgcaagagcaagtgcagcga 755 Query: 61 tgcggtggccaagtgcttcgaatgccagagctacctgtgcgccaattgtgtaactgctca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 756 tgcggtggccaagtgcttcgaatgccagagctacctgtgcgccaattgtgtaactgctca 815 Query: 121 tgagttcatgcactgcttcaacggacacaatgtgtgcctgattaagggttttgaggcgag 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 816 tgagttcatgcactgcttcaacggacacaatgtgtgcctgattaagggttttgaggcgag 875 Query: 181 caccactggcactccgctgtcggttggatcgcctagcaacaatccggcgtcgaatgagtt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 876 caccactggcactccgctgtcggttggatcgcctagcaacaatccggcgtcgaatgagtt 935 Query: 241 caagtacgccagttcgctgaccatgatgct 270 |||||||||||||||||||||||||||||| Sbjct: 936 caagtacgccagttcgctgaccatgatgct 965 >brat-RB feature: mRNA loc=2L:join(19136658..19136838,19144168..19144441, 19146178..19150655);ID=FBan0010719;gene_id=FBgn0010300;ge ne_sym=brat;sym=CG10719;scaffold=AE003661;len=4933 Length = 4933 Score = 527 bits (266), Expect = e-149 Identities = 269/270 (99%) Strand = Plus / Plus Query: 1 caacacatccgccaatggatctccgccacgttgcaccgcctgcaatagcaagtgcagcga 60 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 1010 caacacatccgccaatggatctccgccacgttgcaccgcctgcaagagcaagtgcagcga 1069 Query: 61 tgcggtggccaagtgcttcgaatgccagagctacctgtgcgccaattgtgtaactgctca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1070 tgcggtggccaagtgcttcgaatgccagagctacctgtgcgccaattgtgtaactgctca 1129 Query: 121 tgagttcatgcactgcttcaacggacacaatgtgtgcctgattaagggttttgaggcgag 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1130 tgagttcatgcactgcttcaacggacacaatgtgtgcctgattaagggttttgaggcgag 1189 Query: 181 caccactggcactccgctgtcggttggatcgcctagcaacaatccggcgtcgaatgagtt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1190 caccactggcactccgctgtcggttggatcgcctagcaacaatccggcgtcgaatgagtt 1249 Query: 241 caagtacgccagttcgctgaccatgatgct 270 |||||||||||||||||||||||||||||| Sbjct: 1250 caagtacgccagttcgctgaccatgatgct 1279 >brat-RA feature: mRNA loc=2L:join(19111889..19112359,19123877..19123927, 19144168..19144441, 19146178..19150655);ID=FBan0010719;gene_id=FBgn0010300;ge ne_sym=brat;sym=CG10719;scaffold=AE003661;len=5274 Length = 5274 Score = 527 bits (266), Expect = e-149 Identities = 269/270 (99%) Strand = Plus / Plus Query: 1 caacacatccgccaatggatctccgccacgttgcaccgcctgcaatagcaagtgcagcga 60 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 1351 caacacatccgccaatggatctccgccacgttgcaccgcctgcaagagcaagtgcagcga 1410 Query: 61 tgcggtggccaagtgcttcgaatgccagagctacctgtgcgccaattgtgtaactgctca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1411 tgcggtggccaagtgcttcgaatgccagagctacctgtgcgccaattgtgtaactgctca 1470 Query: 121 tgagttcatgcactgcttcaacggacacaatgtgtgcctgattaagggttttgaggcgag 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1471 tgagttcatgcactgcttcaacggacacaatgtgtgcctgattaagggttttgaggcgag 1530 Query: 181 caccactggcactccgctgtcggttggatcgcctagcaacaatccggcgtcgaatgagtt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1531 caccactggcactccgctgtcggttggatcgcctagcaacaatccggcgtcgaatgagtt 1590 Query: 241 caagtacgccagttcgctgaccatgatgct 270 |||||||||||||||||||||||||||||| Sbjct: 1591 caagtacgccagttcgctgaccatgatgct 1620 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6720 Number of Sequences: 18737 Number of extensions: 6720 Number of successful extensions: 558 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 555 Number of HSP's gapped (non-prelim): 3 length of query: 330 length of database: 41,270,998 effective HSP length: 16 effective length of query: 314 effective length of database: 40,971,206 effective search space: 12864958684 effective search space used: 12864958684 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG638465|BG638465 LD26123.3prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD26123 3 similar to CG10621: FBan0010621 located on: 2L 37B8-37B8;: 04/10/2001, mRNA sequence. (483 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG10621-RA feature: mRNA loc=2L:complement(18930289..18931080,18... 906 0.0 >CG10621-RA feature: mRNA loc=2L:complement(18930289..18931080,18931241..18931420, 18931487..18931656, 18932355..18932504);ID=FBan0010621;gene_id=FBgn0032726;ge ne_sym=CG10621;sym=CG10621;scaffold=AE003661;len=1292 Length = 1292 Score = 906 bits (457), Expect = 0.0 Identities = 480/485 (98%), Gaps = 2/485 (0%) Strand = Plus / Minus Query: 1 gtcttttgtcttttctgttttattaaaataagttgtatgccttaataactaaatacattt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1292 gtcttttgtcttttctgttttattaaaataagttgtatgccttaataactaaatacattt 1233 Query: 61 atttacagtactaaatggataactactttgttcttttcgaaggtactgagatccccagct 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1232 atttacagtactaaatggataactactttgttcttttcgaaggtactgagatccccagct 1173 Query: 121 tagaagttcatcc-tatgagagcttcttcagtttgttccagtcgcgaatggcctccccga 179 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1172 tagaagttcatccctatgagagcttcttcagtttgttccagtcgcgaatggcctccccga 1113 Query: 180 tgtggcgtatatccctcgcataagtgcgacag-atcccccaatgaccttggcccccagtt 238 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 1112 tgtggcgtatatccctcgcataagtgcgacagcatcccccaatgaccttggcccccagtt 1053 Query: 239 gcgcccactccggaacgtagttcgccaagggcacacagtgctcccttccctgccagccgt 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1052 gcgcccactccggaacgtagttcgccaagggcacacagtgctcccttccctgccagccgt 993 Query: 299 tgaccacgtcgtatacctctccgctattggggtacaccaccaacggtatctgctcaccca 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 992 tgaccacgtcgtatacctctccgctattggggtacaccaccaacggtatctgctcaccca 933 Query: 359 cttcgcggtcaccattcaaactcttaaagagcggggtcacaaacttcgggtgcacacaat 418 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 932 cttcgcggtcaccattcaaactcttaaagagcggggtcacaaacttcggatgcacacaat 873 Query: 419 ttactccgatggccagggacttatcctggggatttcgttcagccaagaggtcccaaatag 478 ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct: 872 ttactccgatggccaggcacttatcctgggcatttcgttcagccaagaggtcccaaatag 813 Query: 479 cattc 483 ||||| Sbjct: 812 cattc 808 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,024 Number of Sequences: 18737 Number of extensions: 10024 Number of successful extensions: 228 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 225 Number of HSP's gapped (non-prelim): 1 length of query: 483 length of database: 41,270,998 effective HSP length: 17 effective length of query: 466 effective length of database: 40,952,469 effective search space: 19083850554 effective search space used: 19083850554 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG638808|BG638808 LD36673.3prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD36673 3 similar to Fer1HCH: FBan0002216 'ligand binding or carrier' located on: 3R 99F4-99F4;: 04/10/2001, mRNA sequence. (587 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Fer1HCH-RE feature: mRNA loc=3R:complement(26200658..26201684,26... 1142 0.0 Fer1HCH-RD feature: mRNA loc=3R:complement(26200658..26201344,26... 1142 0.0 Fer1HCH-RC feature: mRNA loc=3R:complement(26200658..26201344,26... 1142 0.0 Fer1HCH-RB feature: mRNA loc=3R:complement(26200658..26201344,26... 1142 0.0 Fer1HCH-RA feature: mRNA loc=3R:complement(26200656..26201344,26... 1142 0.0 >Fer1HCH-RE feature: mRNA loc=3R:complement(26200658..26201684,26202552..26202638, 26202863..26203212);ID=FBan0002216;gene_id=FBgn0015222;ge ne_sym=Fer1HCH;sym=CG2216;scaffold=AE003773;len=1464 Length = 1464 Score = 1142 bits (576), Expect = 0.0 Identities = 584/587 (99%) Strand = Plus / Minus Query: 1 atttcgttacatatatattgttatttatttaacaacttgctcgtctaattgacagaaaaa 60 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 1461 atttcgttacatatatattgttatttatttaagaacttgctcgtctaattgacagaaaaa 1402 Query: 61 tataaagatataggatgtattgaatgggttgtgctgagtgtcttactatgcgaatgagcg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1401 tataaagatataggatgtattgaatgggttgtgctgagtgtcttactatgcgaatgagcg 1342 Query: 121 attccacttaagcctaggcgaaatctcggcgattgcataatgtggagccccctcccgagg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1341 attccacttaagcctaggcgaaatctcggcgattgcataatgtggagccccctcccgagg 1282 Query: 181 tgtacggaaatcacaagtggttgataagaaagaacagacgtggaattttgctgtgctggt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1281 tgtacggaaatcacaagtggttgataagaaagaacagacgtggaattttgctgtgctggt 1222 Query: 241 ttgaggatcgcagtcgaacggataatttattggccagtcgccgacttggctggtgatgat 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1221 ttgaggatcgcagtcgaacggataatttattggccagtcgccgacttggctggtgatgat 1162 Query: 301 ttaatagcggaccctcgggaaggctctctgggctgacagataacagataactcgactggc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1161 ttaatagcggaccctcgggaaggctctctgggctgacagataacagataactcgactggc 1102 Query: 361 tgataattttgatgcgtgactgggcgctgcgccttctctatctccacctccttacagggt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1101 tgataattttgatgcgtgactgggcgctgcgccttctctatctccacctccttacagggt 1042 Query: 421 cttgtcgaacaggaactcgcccagttcgccgttggtgtccatcatcttcttgagagtggt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1041 cttgtcgaacaggaactcgcccagttcgccgttggtgtccatcatcttcttgagagtggt 982 Query: 481 cagcttgccggcgagctcgcgctgtccgtggagctgctcctccagatagacaccggtcag 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 981 cagcttgccggcgagctcgcgctgtccgtggagctgctcctccagatagacaccggtcag 922 Query: 541 gtagtccaccaggtgggantggttgtagggcttgttctcgcaggtct 587 |||||||||||||||| | |||||||||||||||||||||||||||| Sbjct: 921 gtagtccaccaggtggtagtggttgtagggcttgttctcgcaggtct 875 >Fer1HCH-RD feature: mRNA loc=3R:complement(26200658..26201344,26201407..26201684, 26202552..26202690, 26202863..26203212);ID=FBan0002216;gene_id=FBgn0015222;ge ne_sym=Fer1HCH;sym=CG2216;scaffold=AE003773;len=1454 Length = 1454 Score = 1142 bits (576), Expect = 0.0 Identities = 584/587 (99%) Strand = Plus / Minus Query: 1 atttcgttacatatatattgttatttatttaacaacttgctcgtctaattgacagaaaaa 60 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 1451 atttcgttacatatatattgttatttatttaagaacttgctcgtctaattgacagaaaaa 1392 Query: 61 tataaagatataggatgtattgaatgggttgtgctgagtgtcttactatgcgaatgagcg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1391 tataaagatataggatgtattgaatgggttgtgctgagtgtcttactatgcgaatgagcg 1332 Query: 121 attccacttaagcctaggcgaaatctcggcgattgcataatgtggagccccctcccgagg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1331 attccacttaagcctaggcgaaatctcggcgattgcataatgtggagccccctcccgagg 1272 Query: 181 tgtacggaaatcacaagtggttgataagaaagaacagacgtggaattttgctgtgctggt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1271 tgtacggaaatcacaagtggttgataagaaagaacagacgtggaattttgctgtgctggt 1212 Query: 241 ttgaggatcgcagtcgaacggataatttattggccagtcgccgacttggctggtgatgat 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1211 ttgaggatcgcagtcgaacggataatttattggccagtcgccgacttggctggtgatgat 1152 Query: 301 ttaatagcggaccctcgggaaggctctctgggctgacagataacagataactcgactggc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1151 ttaatagcggaccctcgggaaggctctctgggctgacagataacagataactcgactggc 1092 Query: 361 tgataattttgatgcgtgactgggcgctgcgccttctctatctccacctccttacagggt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1091 tgataattttgatgcgtgactgggcgctgcgccttctctatctccacctccttacagggt 1032 Query: 421 cttgtcgaacaggaactcgcccagttcgccgttggtgtccatcatcttcttgagagtggt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1031 cttgtcgaacaggaactcgcccagttcgccgttggtgtccatcatcttcttgagagtggt 972 Query: 481 cagcttgccggcgagctcgcgctgtccgtggagctgctcctccagatagacaccggtcag 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 971 cagcttgccggcgagctcgcgctgtccgtggagctgctcctccagatagacaccggtcag 912 Query: 541 gtagtccaccaggtgggantggttgtagggcttgttctcgcaggtct 587 |||||||||||||||| | |||||||||||||||||||||||||||| Sbjct: 911 gtagtccaccaggtggtagtggttgtagggcttgttctcgcaggtct 865 >Fer1HCH-RC feature: mRNA loc=3R:complement(26200658..26201344,26201407..26201684, 26202552..26202730, 26202863..26203212);ID=FBan0002216;gene_id=FBgn0015222;ge ne_sym=Fer1HCH;sym=CG2216;scaffold=AE003773;len=1494 Length = 1494 Score = 1142 bits (576), Expect = 0.0 Identities = 584/587 (99%) Strand = Plus / Minus Query: 1 atttcgttacatatatattgttatttatttaacaacttgctcgtctaattgacagaaaaa 60 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 1491 atttcgttacatatatattgttatttatttaagaacttgctcgtctaattgacagaaaaa 1432 Query: 61 tataaagatataggatgtattgaatgggttgtgctgagtgtcttactatgcgaatgagcg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1431 tataaagatataggatgtattgaatgggttgtgctgagtgtcttactatgcgaatgagcg 1372 Query: 121 attccacttaagcctaggcgaaatctcggcgattgcataatgtggagccccctcccgagg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1371 attccacttaagcctaggcgaaatctcggcgattgcataatgtggagccccctcccgagg 1312 Query: 181 tgtacggaaatcacaagtggttgataagaaagaacagacgtggaattttgctgtgctggt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1311 tgtacggaaatcacaagtggttgataagaaagaacagacgtggaattttgctgtgctggt 1252 Query: 241 ttgaggatcgcagtcgaacggataatttattggccagtcgccgacttggctggtgatgat 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1251 ttgaggatcgcagtcgaacggataatttattggccagtcgccgacttggctggtgatgat 1192 Query: 301 ttaatagcggaccctcgggaaggctctctgggctgacagataacagataactcgactggc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1191 ttaatagcggaccctcgggaaggctctctgggctgacagataacagataactcgactggc 1132 Query: 361 tgataattttgatgcgtgactgggcgctgcgccttctctatctccacctccttacagggt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1131 tgataattttgatgcgtgactgggcgctgcgccttctctatctccacctccttacagggt 1072 Query: 421 cttgtcgaacaggaactcgcccagttcgccgttggtgtccatcatcttcttgagagtggt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1071 cttgtcgaacaggaactcgcccagttcgccgttggtgtccatcatcttcttgagagtggt 1012 Query: 481 cagcttgccggcgagctcgcgctgtccgtggagctgctcctccagatagacaccggtcag 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1011 cagcttgccggcgagctcgcgctgtccgtggagctgctcctccagatagacaccggtcag 952 Query: 541 gtagtccaccaggtgggantggttgtagggcttgttctcgcaggtct 587 |||||||||||||||| | |||||||||||||||||||||||||||| Sbjct: 951 gtagtccaccaggtggtagtggttgtagggcttgttctcgcaggtct 905 >Fer1HCH-RB feature: mRNA loc=3R:complement(26200658..26201344,26201407..26201684, 26202552..26202638, 26202863..26203212);ID=FBan0002216;gene_id=FBgn0015222;ge ne_sym=Fer1HCH;sym=CG2216;scaffold=AE003773;len=1402 Length = 1402 Score = 1142 bits (576), Expect = 0.0 Identities = 584/587 (99%) Strand = Plus / Minus Query: 1 atttcgttacatatatattgttatttatttaacaacttgctcgtctaattgacagaaaaa 60 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 1399 atttcgttacatatatattgttatttatttaagaacttgctcgtctaattgacagaaaaa 1340 Query: 61 tataaagatataggatgtattgaatgggttgtgctgagtgtcttactatgcgaatgagcg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1339 tataaagatataggatgtattgaatgggttgtgctgagtgtcttactatgcgaatgagcg 1280 Query: 121 attccacttaagcctaggcgaaatctcggcgattgcataatgtggagccccctcccgagg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1279 attccacttaagcctaggcgaaatctcggcgattgcataatgtggagccccctcccgagg 1220 Query: 181 tgtacggaaatcacaagtggttgataagaaagaacagacgtggaattttgctgtgctggt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1219 tgtacggaaatcacaagtggttgataagaaagaacagacgtggaattttgctgtgctggt 1160 Query: 241 ttgaggatcgcagtcgaacggataatttattggccagtcgccgacttggctggtgatgat 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1159 ttgaggatcgcagtcgaacggataatttattggccagtcgccgacttggctggtgatgat 1100 Query: 301 ttaatagcggaccctcgggaaggctctctgggctgacagataacagataactcgactggc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1099 ttaatagcggaccctcgggaaggctctctgggctgacagataacagataactcgactggc 1040 Query: 361 tgataattttgatgcgtgactgggcgctgcgccttctctatctccacctccttacagggt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1039 tgataattttgatgcgtgactgggcgctgcgccttctctatctccacctccttacagggt 980 Query: 421 cttgtcgaacaggaactcgcccagttcgccgttggtgtccatcatcttcttgagagtggt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 979 cttgtcgaacaggaactcgcccagttcgccgttggtgtccatcatcttcttgagagtggt 920 Query: 481 cagcttgccggcgagctcgcgctgtccgtggagctgctcctccagatagacaccggtcag 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 919 cagcttgccggcgagctcgcgctgtccgtggagctgctcctccagatagacaccggtcag 860 Query: 541 gtagtccaccaggtgggantggttgtagggcttgttctcgcaggtct 587 |||||||||||||||| | |||||||||||||||||||||||||||| Sbjct: 859 gtagtccaccaggtggtagtggttgtagggcttgttctcgcaggtct 813 >Fer1HCH-RA feature: mRNA loc=3R:complement(26200656..26201344,26201407..26201684, 26202552..26203217);ID=FBan0002216;gene_id=FBgn0015222;ge ne_sym=Fer1HCH;sym=CG2216;scaffold=AE003773;len=1633 Length = 1633 Score = 1142 bits (576), Expect = 0.0 Identities = 584/587 (99%) Strand = Plus / Minus Query: 1 atttcgttacatatatattgttatttatttaacaacttgctcgtctaattgacagaaaaa 60 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 1628 atttcgttacatatatattgttatttatttaagaacttgctcgtctaattgacagaaaaa 1569 Query: 61 tataaagatataggatgtattgaatgggttgtgctgagtgtcttactatgcgaatgagcg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1568 tataaagatataggatgtattgaatgggttgtgctgagtgtcttactatgcgaatgagcg 1509 Query: 121 attccacttaagcctaggcgaaatctcggcgattgcataatgtggagccccctcccgagg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1508 attccacttaagcctaggcgaaatctcggcgattgcataatgtggagccccctcccgagg 1449 Query: 181 tgtacggaaatcacaagtggttgataagaaagaacagacgtggaattttgctgtgctggt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1448 tgtacggaaatcacaagtggttgataagaaagaacagacgtggaattttgctgtgctggt 1389 Query: 241 ttgaggatcgcagtcgaacggataatttattggccagtcgccgacttggctggtgatgat 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1388 ttgaggatcgcagtcgaacggataatttattggccagtcgccgacttggctggtgatgat 1329 Query: 301 ttaatagcggaccctcgggaaggctctctgggctgacagataacagataactcgactggc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1328 ttaatagcggaccctcgggaaggctctctgggctgacagataacagataactcgactggc 1269 Query: 361 tgataattttgatgcgtgactgggcgctgcgccttctctatctccacctccttacagggt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1268 tgataattttgatgcgtgactgggcgctgcgccttctctatctccacctccttacagggt 1209 Query: 421 cttgtcgaacaggaactcgcccagttcgccgttggtgtccatcatcttcttgagagtggt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1208 cttgtcgaacaggaactcgcccagttcgccgttggtgtccatcatcttcttgagagtggt 1149 Query: 481 cagcttgccggcgagctcgcgctgtccgtggagctgctcctccagatagacaccggtcag 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1148 cagcttgccggcgagctcgcgctgtccgtggagctgctcctccagatagacaccggtcag 1089 Query: 541 gtagtccaccaggtgggantggttgtagggcttgttctcgcaggtct 587 |||||||||||||||| | |||||||||||||||||||||||||||| Sbjct: 1088 gtagtccaccaggtggtagtggttgtagggcttgttctcgcaggtct 1042 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,768 Number of Sequences: 18737 Number of extensions: 15768 Number of successful extensions: 374 Number of sequences better than 1.0e-100: 5 Number of HSP's better than 0.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 369 Number of HSP's gapped (non-prelim): 5 length of query: 587 length of database: 41,270,998 effective HSP length: 17 effective length of query: 570 effective length of database: 40,952,469 effective search space: 23342907330 effective search space used: 23342907330 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG638941|BG638941 LD39226.3prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD39226 3 similar to CG10354: FBan0010354 'enzyme' located on: 2L 27C3-27C3;: 04/10/2001, mRNA sequence. (590 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG10354-RA feature: mRNA loc=2L:6900318..6903663;ID=FBan0010354;... 1164 0.0 >CG10354-RA feature: mRNA loc=2L:6900318..6903663;ID=FBan0010354;gene_id=FBgn00318 68;gene_sym=CG10354;sym=CG10354;scaffold=AE003615;len=33 46 Length = 3346 Score = 1164 bits (587), Expect = 0.0 Identities = 589/590 (99%) Strand = Plus / Plus Query: 1 acatctacgaggaccccaccttgccgaatccaaatgggatagagtttgacaatctgtacc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 180 acatctacgaggaccccaccttgccgaatccaaatgggatagagtttgacaatctgtacc 239 Query: 61 tggncatgaacggcatcatccatccgtgcacgcatccggaggacaagccggcgccgaaga 120 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 240 tggacatgaacggcatcatccatccgtgcacgcatccggaggacaagccggcgccgaaga 299 Query: 121 acgaggacgagatgatggtggccatcttcgaatgcatcgaccgtctgttcggtattgtac 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 300 acgaggacgagatgatggtggccatcttcgaatgcatcgaccgtctgttcggtattgtac 359 Query: 181 gtcctcgaaaactgctctatatggccatcgatggcgttgctccacgagccaagatgaatc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 360 gtcctcgaaaactgctctatatggccatcgatggcgttgctccacgagccaagatgaatc 419 Query: 241 agcagcgatctcgtcgcttccgagcggccaaggaaaccaccgaaaagcggctggagatag 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 420 agcagcgatctcgtcgcttccgagcggccaaggaaaccaccgaaaagcggctggagatag 479 Query: 301 cacggatccgcgaggagctgctgagccgcggctgcaagctgccaccggagaaggagaagg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 480 cacggatccgcgaggagctgctgagccgcggctgcaagctgccaccggagaaggagaagg 539 Query: 361 gtgaacactttgactccaactgcatcacgccgggcaccccgttcatggaccgactgagca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 540 gtgaacactttgactccaactgcatcacgccgggcaccccgttcatggaccgactgagca 599 Query: 421 agtgtttgcactactttgttcatgatcgtcaaaacaataacccggcctggaagggcatca 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 600 agtgtttgcactactttgttcatgatcgtcaaaacaataacccggcctggaagggcatca 659 Query: 481 aggtgatcctgtcggacgccaatgtgcccggtgagggtgagcacaagatcatggattaca 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 660 aggtgatcctgtcggacgccaatgtgcccggtgagggtgagcacaagatcatggattaca 719 Query: 541 ttcgcaagcagcgtgcccagcctgatcacgatcccaacacgcagcacgtc 590 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 720 ttcgcaagcagcgtgcccagcctgatcacgatcccaacacgcagcacgtc 769 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,753 Number of Sequences: 18737 Number of extensions: 16753 Number of successful extensions: 493 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 492 Number of HSP's gapped (non-prelim): 1 length of query: 590 length of database: 41,270,998 effective HSP length: 17 effective length of query: 573 effective length of database: 40,952,469 effective search space: 23465764737 effective search space used: 23465764737 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG639162|BG639162 LD45671.3prime LD Drosophila melanogaster embryo pOT2 Drosophila melanogaster cDNA clone LD45671 3 similar to lat: FBan0004088 'DNA replication factor' located on: 2R 49F10-49F11;: 04/10/2001, mRNA sequence. (536 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,697 Number of Sequences: 18737 Number of extensions: 15697 Number of successful extensions: 440 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 440 Number of HSP's gapped (non-prelim): 0 length of query: 536 length of database: 41,270,998 effective HSP length: 17 effective length of query: 519 effective length of database: 40,952,469 effective search space: 21254331411 effective search space used: 21254331411 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG639283|BG639283 LP02275.3prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP02275 3 similar to CG18180: FBan0018180 'endopeptidase' located on: 3L 67B10-67B10;: 04/11/2001 , mRNA sequence. (526 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG18179-RA feature: mRNA loc=3L:9596802..9597675;ID=FBan0018179;... 957 0.0 >CG18179-RA feature: mRNA loc=3L:9596802..9597675;ID=FBan0018179;gene_id=FBgn00360 23;gene_sym=CG18179;sym=CG18179;scaffold=AE003551;len=87 4 Length = 874 Score = 957 bits (483), Expect = 0.0 Identities = 513/524 (97%), Gaps = 1/524 (0%) Strand = Plus / Minus Query: 3 atttcatataaagattttattnnnnnnntacaaaggatttattaagagtttagtaggaga 62 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 872 atttcatataaagattttattaaaaaaatacaaaggatttattaagagtttagtaggaga 813 Query: 63 tgccggtgttgtcacggatccatcccaagtagtcggtgacgcgggtgtagccggaaggac 122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 812 tgccggtgttgtcacggatccatcccaagtagtcggtgacgcgggtgtagccggaaggac 753 Query: 123 cgctgtggcagtccaccgagccaaaggtaatcactcccactagccgagcgttgtcatggg 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 752 cgctgtggcagtccaccgagccaaaggtaatcactcccactagccgagcgttgtcatggg 693 Query: 183 taacgagttggttcaccagagtcgcctccgcaagaggatttgccatcggtgcggcgcgtg 242 |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 692 taacgagt-ggaccaccagagtcgcctccgcaagaggatttgccatcggtgcggcgcgtg 634 Query: 243 cacatgtcagtgctggccacggtgccgtaggactgctcgcactcgctgttgctgatgatc 302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 633 cacatgtcagtgctggccacggtgccgtaggactgctcgcactcgctgttgctgatgatc 574 Query: 303 tggacgtccatgcactgcagccagtcggccaggttgccattgtccatgccgccccatccg 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 573 tggacgtccatgcactgcagccagtcggccaggttgccattgtccatgccgccccatccg 514 Query: 363 caggcaacgcaccatgtgtccacgaagcggtcgctctcctcgctgaagcttggcagggcg 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 513 caggcaacgcaccatgtgtccacgaagcggtcgctctcctcgctgaagcttggcagggcg 454 Query: 423 accttgttgatcaagtcggtgaaacccacggagggagtgcggatcagaccgatgtcacga 482 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 453 accttgttgatcaagtcggtgaagcccacggagggagtgcggatcagaccgatgtcacga 394 Query: 483 ccgccctcagcgggccagtttggatggctgataaagttgtcacg 526 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 393 ccgccctcagcgggccagtttggatggctgataaagttgtcacg 350 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,491 Number of Sequences: 18737 Number of extensions: 11491 Number of successful extensions: 291 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 288 Number of HSP's gapped (non-prelim): 1 length of query: 526 length of database: 41,270,998 effective HSP length: 17 effective length of query: 509 effective length of database: 40,952,469 effective search space: 20844806721 effective search space used: 20844806721 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG639834|BG639834 SD07237.3prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD07237 3, mRNA sequence. (565 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 19,276 Number of Sequences: 18737 Number of extensions: 19276 Number of successful extensions: 525 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 525 Number of HSP's gapped (non-prelim): 0 length of query: 565 length of database: 41,270,998 effective HSP length: 17 effective length of query: 548 effective length of database: 40,952,469 effective search space: 22441953012 effective search space used: 22441953012 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BI481901|BI481901 RE64518.5prime RE Drosophila melanogaster normalized Embryo pFlc-1 Drosophila melanogaster cDNA clone RE64518 5, mRNA sequence. (610 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 33,774 Number of Sequences: 18737 Number of extensions: 33774 Number of successful extensions: 4755 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 4755 Number of HSP's gapped (non-prelim): 0 length of query: 610 length of database: 41,270,998 effective HSP length: 17 effective length of query: 593 effective length of database: 40,952,469 effective search space: 24284814117 effective search space used: 24284814117 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AQ024979|AQ024979 EP(2)0853 Drosophila melanogaster EP line Drosophila melanogaster genomic Sequence recovered from 5' end of P element, DNA sequence. (299 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6488 Number of Sequences: 18737 Number of extensions: 6488 Number of successful extensions: 553 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 553 Number of HSP's gapped (non-prelim): 0 length of query: 299 length of database: 41,270,998 effective HSP length: 16 effective length of query: 283 effective length of database: 40,971,206 effective search space: 11594851298 effective search space used: 11594851298 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AQ025082|AQ025082 EP(3)0416 Drosophila melanogaster EP line Drosophila melanogaster genomic Sequence recovered from 5' end of P element, DNA sequence. (128 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1772 Number of Sequences: 18737 Number of extensions: 1772 Number of successful extensions: 115 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 115 Number of HSP's gapped (non-prelim): 0 length of query: 128 length of database: 41,270,998 effective HSP length: 16 effective length of query: 112 effective length of database: 40,971,206 effective search space: 4588775072 effective search space used: 4588775072 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AQ025513|AQ025513 EP(X)1581 Drosophila melanogaster EP line Drosophila melanogaster genomic Sequence recovered from 5' end of P element, DNA sequence. (81 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2364 Number of Sequences: 18737 Number of extensions: 2364 Number of successful extensions: 691 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 691 Number of HSP's gapped (non-prelim): 0 length of query: 81 length of database: 41,270,998 effective HSP length: 16 effective length of query: 65 effective length of database: 40,971,206 effective search space: 2663128390 effective search space used: 2663128390 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AQ026462|AQ026462 EP(2)0639 Drosophila melanogaster EP line Drosophila melanogaster genomic Sequence recovered from 5' end of P element, DNA sequence. (61 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1229 Number of Sequences: 18737 Number of extensions: 1229 Number of successful extensions: 263 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 263 Number of HSP's gapped (non-prelim): 0 length of query: 61 length of database: 41,270,998 effective HSP length: 15 effective length of query: 46 effective length of database: 40,989,943 effective search space: 1885537378 effective search space used: 1885537378 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 183 (363.3 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AQ073524|AQ073524 EP(2)2359-3prime Drosophila melanogaster EP line Drosophila melanogaster genomic Sequence recovered from 3' end of P element, DNA sequence. (120 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2799 Number of Sequences: 18737 Number of extensions: 2799 Number of successful extensions: 299 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 299 Number of HSP's gapped (non-prelim): 0 length of query: 120 length of database: 41,270,998 effective HSP length: 16 effective length of query: 104 effective length of database: 40,971,206 effective search space: 4261005424 effective search space used: 4261005424 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AQ073556|AQ073556 EP(2)2402-3prime Drosophila melanogaster EP line Drosophila melanogaster genomic Sequence recovered from 3' end of P element, DNA sequence. (79 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1068 Number of Sequences: 18737 Number of extensions: 1068 Number of successful extensions: 261 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 261 Number of HSP's gapped (non-prelim): 0 length of query: 79 length of database: 41,270,998 effective HSP length: 16 effective length of query: 63 effective length of database: 40,971,206 effective search space: 2581185978 effective search space used: 2581185978 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AQ254834|AQ254834 EP(2)2148 Drosophila melanogaster EP line Drosophila melanogaster genomic Sequence recovered from Both 5' and 3' ends of P element, DNA sequence. (104 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1848 Number of Sequences: 18737 Number of extensions: 1848 Number of successful extensions: 433 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 433 Number of HSP's gapped (non-prelim): 0 length of query: 104 length of database: 41,270,998 effective HSP length: 16 effective length of query: 88 effective length of database: 40,971,206 effective search space: 3605466128 effective search space used: 3605466128 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AQ254862|AQ254862 EP(2)2437 Drosophila melanogaster EP line Drosophila melanogaster genomic Sequence recovered from Both 5' and 3' ends of P element, DNA sequence. (104 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1848 Number of Sequences: 18737 Number of extensions: 1848 Number of successful extensions: 433 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 433 Number of HSP's gapped (non-prelim): 0 length of query: 104 length of database: 41,270,998 effective HSP length: 16 effective length of query: 88 effective length of database: 40,971,206 effective search space: 3605466128 effective search space used: 3605466128 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BT003576|BT003576 Drosophila melanogaster LD40262 full insert cDNA. (4741 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG30020-RA feature: mRNA loc=2R:join(5951544..5952095,5952165..5... 6090 0.0 >CG30020-RA feature: mRNA loc=2R:join(5951544..5952095,5952165..5952264, 5952327..5952743,5952805..5952954,5953012..5953125, 5953200..5953550,5954340..5955071,5955142..5955321, 5955382..5955477,5955592..5955627,5955716..5955988, 5956137..5957046, 5957107..5957920);ID=FBan0030020;gene_id=FBgn0050020;gene _sym=CG30020;sym=CG30020;scaffold=AE003828;len=4725 Length = 4725 Score = 6090 bits (3072), Expect = 0.0 Identities = 3072/3072 (100%) Strand = Plus / Plus Query: 1 cctttgtaatttatttcgacgcgacgcgagtggagaaaaacaatcaaattaaattctcta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 13 cctttgtaatttatttcgacgcgacgcgagtggagaaaaacaatcaaattaaattctcta 72 Query: 61 agacgtgataaattctggcgctttaccagctaaacgcttcgaacggaccgcagccgatac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 73 agacgtgataaattctggcgctttaccagctaaacgcttcgaacggaccgcagccgatac 132 Query: 121 gggtgccacccgatgagcagctcgtgaacgatggcgctgaacaaaaggaagagcccttac 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 133 gggtgccacccgatgagcagctcgtgaacgatggcgctgaacaaaaggaagagcccttac 192 Query: 181 tcggacccaatttcgggcgccgaagtggactacaagttgtcatgtcgctgctgcttgaag 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 193 tcggacccaatttcgggcgccgaagtggactacaagttgtcatgtcgctgctgcttgaag 252 Query: 241 acgaacgtggagtacgtcaaactggactcggtgtcggtggcgcgcagtctggacccggcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 253 acgaacgtggagtacgtcaaactggactcggtgtcggtggcgcgcagtctggacccggcg 312 Query: 301 gacgccactgagaagataccgctccttcgttgcctgctgttctgcgtgagcgccgataat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 313 gacgccactgagaagataccgctccttcgttgcctgctgttctgcgtgagcgccgataat 372 Query: 361 gcgccggagctgccgcaacacatatgcctcgagtgcagcaagagcctgcaggtggcctac 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 373 gcgccggagctgccgcaacacatatgcctcgagtgcagcaagagcctgcaggtggcctac 432 Query: 421 tacttccttcagaatgcgctgcgtgcccacgagatcctgtgccggaaactatgtcccaag 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 433 tacttccttcagaatgcgctgcgtgcccacgagatcctgtgccggaaactatgtcccaag 492 Query: 481 gtttcaaagagactgaatggcactttggctcaggagcaggaaaagccagcgtgtgcagag 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 493 gtttcaaagagactgaatggcactttggctcaggagcaggaaaagccagcgtgtgcagag 552 Query: 541 ccggtacagcccctaaagaccatgcggcacgagtgtcaggtctgcggagtagtgctctac 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 553 ccggtacagcccctaaagaccatgcggcacgagtgtcaggtctgcggagtagtgctctac 612 Query: 601 aatcgcctggagctcaagcagcacatacgccagcatgcagagggtctttcatacaactgc 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 613 aatcgcctggagctcaagcagcacatacgccagcatgcagagggtctttcatacaactgc 672 Query: 661 aagttgtgcagcttcacgtcgttgaagcaacgaactttgttcgagcactatgtgaccatg 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 673 aagttgtgcagcttcacgtcgttgaagcaacgaactttgttcgagcactatgtgaccatg 732 Query: 721 cacaacatgccccttagccaggcagaggagtacgtaaaatcaaagcatcttccagctcct 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 733 cacaacatgccccttagccaggcagaggagtacgtaaaatcaaagcatcttccagctcct 792 Query: 781 aaagaagaagaggttaaggcagtgtgcacgcttgaggatatggagttgctgatacccacc 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 793 aaagaagaagaggttaaggcagtgtgcacgcttgaggatatggagttgctgatacccacc 852 Query: 841 gtacttaggccggaagattacgtacagccgcatccgcatattgataacgaccaactgcga 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 853 gtacttaggccggaagattacgtacagccgcatccgcatattgataacgaccaactgcga 912 Query: 901 gacattgatcaccagctggccgtcagcatggatgaacccgtaccgtcagtggacagcctc 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 913 gacattgatcaccagctggccgtcagcatggatgaacccgtaccgtcagtggacagcctc 972 Query: 961 acctccaccctgccgccgatggatacgcccaatgttagcatcggcaccgagtaccttgtc 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 973 acctccaccctgccgccgatggatacgcccaatgttagcatcggcaccgagtaccttgtc 1032 Query: 1021 cttcccgacggttcgctgcagcaggttaacggaagcggcgtggtcatcgagtatatagac 1080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1033 cttcccgacggttcgctgcagcaggttaacggaagcggcgtggtcatcgagtatatagac 1092 Query: 1081 gatagcaaaccgaatagttccagcaacgtcaatgtaagcctacaaaatctcctgtccagc 1140 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1093 gatagcaaaccgaatagttccagcaacgtcaatgtaagcctacaaaatctcctgtccagc 1152 Query: 1141 cataatgatccgatggatatcgatgtcaacgaattgatcgtggaggaaatgatgccacag 1200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1153 cataatgatccgatggatatcgatgtcaacgaattgatcgtggaggaaatgatgccacag 1212 Query: 1201 ataagaatcaagccaaaaccggccgttatcggaacatccattcacaagcacaagtgcaaa 1260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1213 ataagaatcaagccaaaaccggccgttatcggaacatccattcacaagcacaagtgcaaa 1272 Query: 1261 ttctgtccgaaaacattctccactgtagcgcgtctaaaatctcatcagttgactcacagc 1320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1273 ttctgtccgaaaacattctccactgtagcgcgtctaaaatctcatcagttgactcacagc 1332 Query: 1321 aatcttcccaaattcttctgcgaccaatgcgacttttactcgttgcgcagcgccgatcta 1380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1333 aatcttcccaaattcttctgcgaccaatgcgacttttactcgttgcgcagcgccgatcta 1392 Query: 1381 atacagcattacaagatggtccaccatcgggttgatgaaaatggcaagaccggcaaggaa 1440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1393 atacagcattacaagatggtccaccatcgggttgatgaaaatggcaagaccggcaaggaa 1452 Query: 1441 caggcgcaaggtatagagtctcgtgtctactcgtgcgatatgtgcctgttcgagacgtcc 1500 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1453 caggcgcaaggtatagagtctcgtgtctactcgtgcgatatgtgcctgttcgagacgtcc 1512 Query: 1501 accgttagccagttgcgaacacactacaaggaacggcacacggtccagcccacggaggtg 1560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1513 accgttagccagttgcgaacacactacaaggaacggcacacggtccagcccacggaggtg 1572 Query: 1561 cagctgcgtcccagttggacgggcgagccaacgacaacgagaggcgttgccgccaagcag 1620 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1573 cagctgcgtcccagttggacgggcgagccaacgacaacgagaggcgttgccgccaagcag 1632 Query: 1621 cagactccggccaagatattaaatcacaccgacatcccgttgggcattaaatatccgcct 1680 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1633 cagactccggccaagatattaaatcacaccgacatcccgttgggcattaaatatccgcct 1692 Query: 1681 ggtgttttggaaacgcaagcgccattgccgcaaccggtggtacatcaaccaatgcctgat 1740 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1693 ggtgttttggaaacgcaagcgccattgccgcaaccggtggtacatcaaccaatgcctgat 1752 Query: 1741 ccaatgcagcaaacggagccgatggccaccacatcgacgaccatcaccgaatcgggcgac 1800 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1753 ccaatgcagcaaacggagccgatggccaccacatcgacgaccatcaccgaatcgggcgac 1812 Query: 1801 atcaacgtagtggtggatgcgacgccgctcttctatgcggcaacctccaactccctgtta 1860 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1813 atcaacgtagtggtggatgcgacgccgctcttctatgcggcaacctccaactccctgtta 1872 Query: 1861 gtgacgaacccggcaccggtgacaacggtggaggaaaccaccggtacggccagcaaccat 1920 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1873 gtgacgaacccggcaccggtgacaacggtggaggaaaccaccggtacggccagcaaccat 1932 Query: 1921 gcatttggaatctttcccgaaatctcagagggcaacctgcccgtgaacgaagccgtacag 1980 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1933 gcatttggaatctttcccgaaatctcagagggcaacctgcccgtgaacgaagccgtacag 1992 Query: 1981 caggcaccagccaattcatctagcgtttcggtgtttggcgacatgcaggactttattgac 2040 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1993 caggcaccagccaattcatctagcgtttcggtgtttggcgacatgcaggactttattgac 2052 Query: 2041 aacaccgatgtggctgccatatgcacaattcccgcggatggcatgcccgttgtggatggt 2100 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2053 aacaccgatgtggctgccatatgcacaattcccgcggatggcatgcccgttgtggatggt 2112 Query: 2101 gatgacattgtgattgataataacaatatcagtctggactttgatgccgagaatttgttc 2160 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2113 gatgacattgtgattgataataacaatatcagtctggactttgatgccgagaatttgttc 2172 Query: 2161 gaggacttcgaggaggaggaggatgatactgtggccgacgaagaagacgaggccgacaat 2220 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2173 gaggacttcgaggaggaggaggatgatactgtggccgacgaagaagacgaggccgacaat 2232 Query: 2221 gaagacgagaatgacaacaatgatgctgccactgatcaaaatctgttgctgaccagcgac 2280 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2233 gaagacgagaatgacaacaatgatgctgccactgatcaaaatctgttgctgaccagcgac 2292 Query: 2281 gatgatgatgtggacgactttgatgacgagcaatcgaagcatctgcagaagccctactgc 2340 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2293 gatgatgatgtggacgactttgatgacgagcaatcgaagcatctgcagaagccctactgc 2352 Query: 2341 atttactgcaataagaagtttaccagtcagtataaattcgagaaccacatgtttgttcat 2400 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2353 atttactgcaataagaagtttaccagtcagtataaattcgagaaccacatgtttgttcat 2412 Query: 2401 cggggtctggctccctatcgctgcgaactgtgcactaacctctacaacatgaagcgattg 2460 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2413 cggggtctggctccctatcgctgcgaactgtgcactaacctctacaacatgaagcgattg 2472 Query: 2461 ctgatcaagcactataaaactgtgcacaagcgaatgcccacgagggacatggtccaggcg 2520 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2473 ctgatcaagcactataaaactgtgcacaagcgaatgcccacgagggacatggtccaggcg 2532 Query: 2521 aagggcgataaggtttccgtagcccgcaccaacatcgaaaaactgtatcctggcaggata 2580 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2533 aagggcgataaggtttccgtagcccgcaccaacatcgaaaaactgtatcctggcaggata 2592 Query: 2581 aagaatccaatgctcatgtgcgcaaagtgtccgtttgaatgcgaatcggattcggagatg 2640 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2593 aagaatccaatgctcatgtgcgcaaagtgtccgtttgaatgcgaatcggattcggagatg 2652 Query: 2641 cgcaagcatctgaatgcccaccatggaatcaatgacggagtgtccgagcatgcaaacgaa 2700 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2653 cgcaagcatctgaatgcccaccatggaatcaatgacggagtgtccgagcatgcaaacgaa 2712 Query: 2701 gtgtttatcatacgcaaattaccatttgaatgtccgcgctgcattcgatcgtttgcggcc 2760 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2713 gtgtttatcatacgcaaattaccatttgaatgtccgcgctgcattcgatcgtttgcggcc 2772 Query: 2761 aagaccactcttagtcgccacctgcagcgcagtcatttggtggatacaattatagagatg 2820 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2773 aagaccactcttagtcgccacctgcagcgcagtcatttggtggatacaattatagagatg 2832 Query: 2821 caaacgccgcattgcggggaagccatcacgactacgatggccacatcctcatcaacgatt 2880 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2833 caaacgccgcattgcggggaagccatcacgactacgatggccacatcctcatcaacgatt 2892 Query: 2881 tctgagcccgtaaactcggtcacagtggatggccaacacaatgagatgatgcagacggat 2940 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2893 tctgagcccgtaaactcggtcacagtggatggccaacacaatgagatgatgcagacggat 2952 Query: 2941 gttggggctgaaaagatgacggaagctttaggcaatggcgatggcaatgaagaaggcggc 3000 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2953 gttggggctgaaaagatgacggaagctttaggcaatggcgatggcaatgaagaaggcggc 3012 Query: 3001 acagatgatggaacaggagttaaagcagaaccggcggtgccagaggaagaactagatccg 3060 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3013 acagatgatggaacaggagttaaagcagaaccggcggtgccagaggaagaactagatccg 3072 Query: 3061 gtaacattggac 3072 |||||||||||| Sbjct: 3073 gtaacattggac 3084 Score = 3071 bits (1549), Expect = 0.0 Identities = 1571/1582 (99%) Strand = Plus / Plus Query: 3132 gacagctacttcgttagaatcacccgtagcaaccacagcttcatcgtccaccactctctt 3191 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3144 gacagctacttcgttagaatcacccgtagcaaccacagcttcatcgtccaccactctctt 3203 Query: 3192 tcccacgcccacaccatttgattttgattatgacataatgagagacgaagcccagcaatc 3251 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3204 tcccacgcccacaccatttgattttgattatgacataatgagagacgaagcccagcaatc 3263 Query: 3252 gtcgcccaatatccatgacgtatccaaagccctcagcgacaatgcatcatccagctgccc 3311 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3264 gtcgcccaatatccatgacgtatccaaagccctcagcgacaatgcatcatccagctgccc 3323 Query: 3312 aattaatgaaagctataaactgctgtccaccactgccctggaaacatcgccagcgaaggg 3371 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3324 aattaatgaaagctataaactgctgtccaccactgccctggaaacatcgccagcgaaggg 3383 Query: 3372 tttacgctccaacagccgtctgcatcgttcttccattcacatttgcaaactctgtaacca 3431 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3384 tttacgctccaacagccgtctgcatcgttcttccattcacatttgcaaactctgtaacca 3443 Query: 3432 aacatttgacgagctgggcaagttggtcaagcatgaaatggagctgcactccaatacgga 3491 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3444 aacatttgacgagctgggcaagttggtcaagcatgaaatggagctgcactccaatacgga 3503 Query: 3492 acgttcgcgatggggctatcagcacaagtgtgccatctgcaatacatcctaccgcacgct 3551 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3504 acgttcgcgatggggctatcagcacaagtgtgccatctgcaatacatcctaccgcacgct 3563 Query: 3552 tacgttgctcaagttccacatgaagcgacacagtaatagaaaatcacagtgcaagctgtg 3611 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3564 tacgttgctcaagttccacatgaagcgacacagtaatagaaaatcacagtgcaagctgtg 3623 Query: 3612 ccccaagtcctttgtaactatcgcagagctcgagcggcacacgaaggccaagcacagcaa 3671 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3624 ccccaagtcctttgtaactatcgcagagctcgagcggcacacgaaggccaagcacagcaa 3683 Query: 3672 ggataagacgcttcggtgctttatggatggctgccggaagacttttgccttcaaacacca 3731 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3684 ggataagacgcttcggtgctttatggatggctgccggaagacttttgccttcaaacacca 3743 Query: 3732 tttgatacgccatcagaaggcctctcatctgagcacgcggtatatatgtcccgtttgcaa 3791 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3744 tttgatacgccatcagaaggcctctcatctgagcacgcggtatatatgtcccgtttgcaa 3803 Query: 3792 taaggaggaaaagtccaatgtgcatctgaaaaatcatatgagcgtgcacaaaggtgagat 3851 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3804 taaggaggaaaagtccaatgtgcatctgaaaaatcatatgagcgtgcacaaaggtgagat 3863 Query: 3852 aacctacaagtgtcccaagtgcgatcgctcctatttgcgacgtggcagactcgtaaccca 3911 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3864 aacctacaagtgtcccaagtgcgatcgctcctatttgcgacgtggcagactcgtaaccca 3923 Query: 3912 tgcactcataatccatgacttgcgcttcaccaccgaagagttgggaaacctctcatccct 3971 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3924 tgcactcataatccatgacttgcgcttcaccaccgaagagttgggaaacctctcatccct 3983 Query: 3972 ggctacgaaccaagccagacctaacgatcttaaagtcgcgacgcccgtgggactcctgga 4031 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3984 ggctacgaaccaagccagacctaacgatcttaaagtcgcgacgcccgtgggactcctgga 4043 Query: 4032 tggccgtaaggatgtgagcggtgcaagcgaagaaaatgggcagccctaaggagctgacga 4091 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4044 tggccgtaaggatgtgagcggtgcaagcgaagaaaatgggcagccctaaggagctgacga 4103 Query: 4092 taattccaagtagttgtgaacttatgcttttacgaatcaagcaaagtaatcgcacaatgt 4151 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4104 taattccaagtagttgtgaacttatgcttttacgaatcaagcaaagtaatcgcacaatgt 4163 Query: 4152 acaaagtttgatatagtctaagtactgttcctctccatcattttagcacatcaaatgtct 4211 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4164 acaaagtttgatatagtctaagtactgttcctctccatcattttagcacatcaaatgtct 4223 Query: 4212 tgaagttttcttgttaagttctagactaggacattaaacacaatctcttatacaaaatta 4271 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4224 tgaagttttcttgttaagttctagactaggacattaaacacaatctcttatacaaaatta 4283 Query: 4272 gttgaaatacagacgaccgatcacttattgacaaatagacttcggtgaaattttcaatgt 4331 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4284 gttgaaatacagacgaccgatcacttattgacaaatagacttcggtgaaattttcaatgt 4343 Query: 4332 attatgaggatccaaaagtagcaatgcccaaatggcaacttaaggtatcgccttaaacat 4391 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4344 attatgaggatccaaaagtagcaatgcccaaatggcaacttaaggtatcgccttaaacat 4403 Query: 4392 aacaatccgcaacgggtctcaaggtgtcagtagttaatccattcgattcccaagcatgat 4451 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4404 aacaatccgcaacgggtctcaaggtgtcagtagttaatccattcgattcccaagcatgat 4463 Query: 4452 tgaggcaatctccaccagctggctctgtattggccaaagagaaacgcttcacatctaatg 4511 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4464 tgaggcaatctccaccagctggctctgtattggccaaagagaaacgcttcacatctaatg 4523 Query: 4512 tttaaaattctccattatatatatgtataattannnnnnnnnnngcaaacggtcatgtat 4571 ||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 4524 tttaaaattctccattatatatatgtataattatttttttttttgcaaacggtcatgtat 4583 Query: 4572 ttcgtatatttacgagcatcgtcatgaatagaataacccaatagttttaggtttaaattc 4631 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4584 ttcgtatatttacgagcatcgtcatgaatagaataacccaatagttttaggtttaaattc 4643 Query: 4632 aacgcgtagaagggataagttatcttcaacgatgttacttataaaagaaacgtacattaa 4691 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4644 aacgcgtagaagggataagttatcttcaacgatgttacttataaaagaaacgtacattaa 4703 Query: 4692 ataacttttactactagattcg 4713 |||||||||||||||||||||| Sbjct: 4704 ataacttttactactagattcg 4725 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 110,705 Number of Sequences: 18737 Number of extensions: 110705 Number of successful extensions: 3572 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 3567 Number of HSP's gapped (non-prelim): 5 length of query: 4741 length of database: 41,270,998 effective HSP length: 19 effective length of query: 4722 effective length of database: 40,914,995 effective search space: 193200606390 effective search space used: 193200606390 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 187 (371.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AX094020|AX094020 Sequence 144 from Patent WO0118547. (489 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG7085-RA feature: mRNA loc=2L:join(2219104..2219848,2221833..22... 410 e-114 >CG7085-RA feature: mRNA loc=2L:join(2219104..2219848,2221833..2221960, 2222024..2222142,2222205..2222380, 2222445..2223670);ID=FBan0007085;gene_id=FBgn0031402;gen e_sym=CG7085;sym=CG7085;scaffold=AE003584;len=2394 Length = 2394 Score = 410 bits (207), Expect = e-114 Identities = 207/207 (100%) Strand = Plus / Plus Query: 1 gctccgacggattggtgcgtcgctcggtgaaaccccgcgaaaacggtggggcggagggtg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 540 gctccgacggattggtgcgtcgctcggtgaaaccccgcgaaaacggtggggcggagggtg 599 Query: 61 ggttgaatgccaacacgccggacgacaaccaggatgcactggacaacctaaaggaccagg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 600 ggttgaatgccaacacgccggacgacaaccaggatgcactggacaacctaaaggaccagg 659 Query: 121 aggacaatatcgacgatggcgactccaaggaaacacgactaacgctcatggaggaggttc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 660 aggacaatatcgacgatggcgactccaaggaaacacgactaacgctcatggaggaggttc 719 Query: 181 tgctgctgggactcaaggacaaggagg 207 ||||||||||||||||||||||||||| Sbjct: 720 tgctgctgggactcaaggacaaggagg 746 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,855 Number of Sequences: 18737 Number of extensions: 11855 Number of successful extensions: 274 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 273 Number of HSP's gapped (non-prelim): 1 length of query: 489 length of database: 41,270,998 effective HSP length: 17 effective length of query: 472 effective length of database: 40,952,469 effective search space: 19329565368 effective search space used: 19329565368 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits)