FlyBase List of Data Fields


Field KeyLabelData classesBrief help
AABAssoc. Aberration----
AALLength in a.a.--protein size in amino acids
AALENPeptide length----
ABAAssociated aberration----
ABODAntibodies generated--Type of antibody generated
ABSRAberration Record----
ABSSRParent Aberration----
ABSTRAbstract----
ABSYSymbol----
ACLAClass of aberration----
ACMComplements----
AFCFails to complement----
AFFYAffy Oligo----
AFSFails to rescue----
AGTAllele or genotype used----
ALCAllele class--Class of allele, including wild-type, loss of function, etc., a controlled vocabulary
ALERAllele Record--an allele record
ALETABAllele table----
ALSOAlso published as----
ALTSQAlternative sequence----
AMAllelism info.--information concerning possible allelism between genes
AMDDeletes/disrupts--information on allelism indicating genes deleted or disrupted by this one
AMDDDoes not delete/disrupt--information on allelism indicating genes not deleted or disrupted by this one
AMDPDuplicated for--information on allelism indicating genes duplicated
AMISMisc. allele information----
AMNDNot duplicated for----
AMPPartially disrupts--information on allelism indicating genes partially deleted or disrupted by this one
AMPDPartially duplicated for----
AMSORescue and compl. info.----
ANRBNot rescued by----
APCPartially complements----
APRPartially rescues----
APRBPartially rescued by----
ARBRescued by----
ARG2FlyBase gene annotation----
ARGSFlyBase gene annotation--Annotated reference gene sequence, showing exons, mRNA, coding sequence, transposon insertion sites, and other sequence features of a gene
ARMChromosome arm----
ARSRescues----
ASALAssociated allele----
ASBAAssociated balancer----
ASCOAssociated construct----
ASCRGNReflects expression of--gene whose promoter region drives the expression of a enhancer trap or reporter construct
ASGNAssociated gene--The polypeptide or transcript reported is the product of this gene.
ASMAssay mode--assay used to obtain expression pattern data
ASPPAssociated polypeptide--proteins known to be encoded by given transcript
ASQGenomic sequence analysis--Preliminary gene structures and adjacent genes and region (GadFly report)
ASTIAssociated insertion----
ASTPAssociated transposon----
ASTRAssociated transcript--transcripts that encode a given protein
ASYMSymbol--an abbreviated, unique, name for an allele (gene variant)
AUAuthor----
BFDBFD Line----
BGVBalancer/ Genotype variant----
BGVRVariant Record----
BGVSYSymbol----
BIBiosis----
BIPBreakpoints inherited from progenitors----
BLOCSequence map----
BMAberration info.----
BMDDisrupted in----
BMDDNot disrupted in----
BMDPDuplicated in----
BMNDNot duplicated in----
BMPPartially disrupted in----
BMPDPartially duplicated in----
BODPExpression data--detailed expression pattern data for transcripts and polypeptides
BPTBreakpoints--Locations of the aberration on the cytological (polytene chromosome) map. To the extent possible, the computed range is consistent with all data known to FlyBase. The computed location may be presented as a range of uncertainty.
BSNBalancer short name----
BURLDatabase link base----
CCComments----
CCLConstruct type----
CCLOCCytological location----
CCMComments on cytology----
CDNAcDNA--detailed information on cDNAs
CDSCoding sequence----
CELGO:Cellular component--subcellular location of gene product, a controlled vocabulary
CGSYMCG Symbol----
CHCharacteristics----
CLAClass of gene--classification of the genetic element, if other than gene, including mitochondrial gene, transposon, non coding RNA gene, and others; a controlled vocabulary
CLNRClone Record----
CLNSRClone----
CLOCCytogenetic map--Location of the gene on the cytological (polytene chromosome) map. To the extent possible, the computed range is consistent with all data known to FlyBase. The computed location may be presented as a range of uncertainty.
CLOCCComputed cytology----
CMTComments----
CNMCommon Name----
CNSCarried in construct--Transposon or construct that carries allele
COCoden----
CORComments on origin----
CPWLibrary plate-well----
CSCloning site----
CSQSequence----
CTGPhysical contig----
CTSYMTranscript symbol----
CVBODPExpression pattern--subcellular region(s) of gene product localization, a controlled vocabulary
CVBODPCExpression pattern comment----
CVCELCell location (CV)----
CVECVector----
CYAAssociated cytology--comments on cytology associated with allele
CYCNotes on cytogenetic map--comments on cytological location
DBADNA/RNA sequences--nucleic acid sequence databank and other DNA accession number
DBAFFlanking sequence----
DBIDDatabase name----
DECDescendant----
DESDescription----
DHOProbable reference ortholog--"Homologous" genes in other species of drosophilid
DISDiscoverer--person discovering the gene or other item
DOMAINDomain----
DTDate--Date record entered or updated
ENLLeft entity----
ENRRight entity----
ENZGO:Molecular function--enzyme name and enzyme commission number, a controlled vocabulary
EPATissue/Position----
EPATExpression pattern----
EPATRExpression pattern----
EPPPattern----
EPTStage----
ERRelated publication----
ESTEST----
EVDEvidence----
EVDREvidence Record----
EXNSQExon composition--list of the exons that make up a particular transcript
ExpatTableExpression pattern----
FBARGSAnnotated reference sequence----
FBDARTSGenBank sequence report----
FGDFormalized genetic data----
FIFile index----
FLQFlanking sequence----
FNCGO:Biological process--function(s) of gene product, a controlled vocabulary
FSQForeign sequence----
GADRAnnotation Record----
GADSRGenome Annotation----
GENRGene Record--Gene record
GENSRParent Gene--Gene sub-record
GIAGenetic interaction (effect, anatomy)----
GIA2Genetic interaction (anatomy, effect)----
GICGenetic interaction (effect, class)----
GIC2Genetic interaction (class, effect)----
GIIGenetic interaction info.----
GLCComments on genetic locn.--comments on, or alternative, genetic location
GLOCRecombination map--Location of the gene on the genetic (recombination) map.
GOGene Ontology----
GOTERMGO Term----
GPDGene product----
GSNAShort name----
GSYMSymbol--an abbreviated, unique, name for a gene
GeneInterTableGenetic Interactions----
HGSimilar genes--Cross-reference to non-Drosophila homolog(s) or analogs
HGTABSimilar genes table----
HITSPositive PCR assay----
IBALUsable as balancer----
ICCComment----
ICLInsertion class----
ICODatabase icon----
IDFlyBase ID--FlyBase identifier number, a unique value for each data record
ID2Secondary ID--secondary or obsolete FlyBase identifier number
IFLInteractive Fly--link to the Interactive Fly document for this gene
INSRInsertion----
INSYInsertion synonym----
IPROInterPro motifs----
ISBNIsbn----
ISSIssue----
ITPInsertion's transposon type----
JRJournal----
KLOCComputed kilobase location----
LGLanguage----
LGAAddn. lang.s----
LIBLibrary class----
LKACDatabase link accession----
LKFLDatabase link field----
LKHEDatabase link help----
LKIDDatabase link id----
LKNADatabase link name----
LOCBLocalization basis----
LOILocation inferred from insertion in----
LOSTAvailability----
MABSTAbstract----
MDMolecular data--molecular information for genes and alleles
MEDPubMed--PubMed (MEDLINE) accession number and abstract, if available, from the NLM PubMed server
MEDABAbstract----
MKMarkers----
MMPMolecular map--Kilobase-level resolution maps curated from publications
MODModification of progenitor----
MRKBody part marker--cell type for which this gene product is a useful marker, a controlled vocabulary
MUMutagen--origin of, or mutagen used to produce. this allele, a controlled vocabulary
NAFDNA Features--general characteristics of DNA sequence, a controlled vocabulary
NAMFull name--full name of gene, allele or other item
NBNeighbor----
NBRNeighbor Record----
NBVNeighbor value----
NCONew cytological order----
OABGenetic data about other aber.----
OLAPOverlaps----
OPOffprint--Indicates a copy of this article is in the Drosophila Offprint Collection maintained by FlyBase (Cambridge)
OPVRExternal database----
OPVSRExternal database----
ORIOrientation----
OTHOther information--miscellaneous information on genes and alleles
OURLDatabase link----
OURLRExternal database links----
OURLR1Database link SR----
OURLSRExternal database links----
PACProtein sequences--protein database accession numbers
PBPublisher----
PCLCell loc. summary--subcellular region(s) of gene product localization
PDOMProtein domains--Protein domain information
PEDPosition-effect data----
PEPSTPeptide Status----
PEVPosition-effect variegation--aberrations causing position-effect variegation of gene, a controlled vocabulary
PEVDDominant PEV in--aberrations causing Dominant position-effect variegation of gene, a controlled vocabulary
PEVNNo PEV in--No position-effect variegation of gene, a controlled vocabulary
PEVRRecessive PEV in--aberrations causing Recessive position-effect variegation of gene, a controlled vocabulary
PGPages----
PHCPhenotypic class--phenotypic class into which the allele falls.A genotype in curly brackets indicates the phenotypic class is dependent on the second genotype in the brackets.
PHIMutant phenotype--phenotypic information on alleles
PHMPhenotype manifest in--the body part affected by the mutant allele, controlled vocabulary.
PHPPhenotypic info.--phenotypic information on genes
PHSStatus----
POLPolymorphic variant--other polypeptides that may be variants of given polypeptide
PPBPlace pub.----
PPCPopulation comments--Comments on population and polymorphism data
PPRPolypeptide Record----
PPSPopulation info----
PPSRPolypeptide----
PRGProgenitor--progenitor allele or chromosome if relevant to allele
PSZProtein size (kD)--protein size in kilodaltons (kD)
PTPart----
PTDProtein & Transcript--Detailed information on transcripts and polypeptides
PTRProtein & Transcript----
PTRRProtein & Transcript Record----
PhenoTableAllele phenotypes----
ProtTransTableProteins & Transcripts----
RCIRelated transgene constructs and insertions----
RCIRRelated transgene constructs and insertions----
RDIDRef.--FlyBase identifier number for Attributed data
RDLData from reference----
RDL1Data from reference----
RDLSRData from reference--Table of data reports attributed to this reference
REFReferences----
REFDRRef. Data Record----
REFDSRData from ref.----
REFFReference----
REFMMini ref.----
REFRReference Record----
REFTABReference table----
RESZRecord size----
RETETable Entry----
REVRecent reviews----
RGRing----
RLRef. list----
RLRReferences----
RLSRReferences----
RNATRNA type--class of transcript, such as mRNA, tRNA, rRNA, etc.; a controlled vocabulary
RPARep. protein sequence--Most representative protein sequence
RPTC2Available reports--Sections of report: Synopsis, just the salient points, Abridged, a reduced report, Full, for all details,
GadFly, gene structures and adjacent genes and region, Interactive Fly report associated with this gene,
Alleles, a table of alleles, Proteins & transcripts, associated products, Recent reviews, review publications for this record, References, listing all publications for a data record, Sequences & similarities, links to sequence and species homology data, Synonyms, other names and symbols for this item, Attributed data, data attributed to particular publications. Recently updated data that has not yet been integrated with the full set.
Italics indicate a section is contained in the current report.
RPTCANAvailable reports----
RPTCONTENTAvailable reports--Section of report: Synopsis, just the salient points, Abridged, a reduced report, Full, for all details,
GadFly, gene structures and adjacent genes and region, Interactive Fly report associated with this gene,
Alleles, a table of alleles, Proteins & transcripts, associated products, Recent reviews, review publications for this record, References, listing all publications for a data record, Sequences & similarities, links to sequence and species homology data, Synonyms, other names and symbols for this item, Attributed data, data attributed to particular publications. Recently updated data that has not yet been integrated with the full set.
Italics indicate a section is contained in the current report.
RPTLData report----
RSRestriction site----
RSQRep. DNA sequence--Most representative DNA sequence
SCAFScaffold----
SEGSegment----
SEPSeparable component----
SEPRSep. component Record----
SERSeries----
SGTPSegment type----
SKStocks--Drosophila stock flies with this gene or entity, available from stock centers
SKCStocks count----
SPSYSymbol----
SQSequence----
SQLENmRNA length----
STSSTS----
STSNAMName----
STSRSTS Record----
SUMXSummary--a generated text summary of the data
SYMSymbol--an abbreviated, unique name
SYNSynonyms--alternate and discontinued symbols and names for this item.
TCCComments----
TCHCharacteristics----
TCLDescription----
TCSRTranscript----
TCTPTransposon construct type----
TETransposable el. data--transposable element data
TFTFeature----
TGTGenotype----
TITitle----
TIRInsertion Record----
TMPLCONTReport content----
TPType--Reference type: abstract, book, review, etc.
TPFBMMPMolecular map----
TPFBSQTransposon sequence----
TPRTransposon Record----
TPSYTransposon synonym----
TPUUses----
TRLLength (Kb)--The size in kilobases of transcript or transposon
TRNResponsible transposon--transposon or insertion chromosome associated with allele
TRNATransposon insertions----
TRRTranscript Record----
TRRECAnnoTranscript Record----
TRRECSRTranscript----
TRSRTransposon----
UABUseful aneuploid aberrations----
VCLIs valid record----
VERSRelease vers.----
VLVolume----
VPR5' experiment info--Has the 5' end of transcript been experimentally determined?
WTWild-type function--information on wild-type function
WTIInteracts genetically with--information on gene interactions
XDAExpression data available----
YRYear----
ZRZool. Rec.----
env------
fbsymFlyBase symbol----
self------