# Genome feature summary of dmel from Genome Feature merge (genomic and cytology features) [20040821] # ALL chromosomes BAC 710 CDS 19178 DNA_motif 5 aberration_junction 127 chromosome_arm 7 chromosome_band 5067 enhancer 33 gene 13667 insertion_site 593 mRNA 19905 match:HDP 164 match:RNAiHDP 294 match:assembly:path 434 match:augustus 48448 match:blastx:aa_SPTR.dmel 362989 match:blastx:aa_SPTR.insect 36973 match:blastx:aa_SPTR.othinv 52064 match:blastx:aa_SPTR.othvert 39865 match:blastx:aa_SPTR.plant 24833 match:blastx:aa_SPTR.primate 51959 match:blastx:aa_SPTR.rodent 53144 match:blastx:aa_SPTR.worm 32197 match:blastx:aa_SPTR.yeast 11371 match:genie 41221 match:genscan 72775 match:repeatmasker 28 match:sim4:na_ARGs.dros 5611 match:sim4:na_ARGsCDS.dros 4710 match:sim4:na_DGC_dros 705 match:sim4:na_dbEST.diff.dmel 201951 match:sim4:na_dbEST.same.dmel 173239 match:sim4:na_gadfly_dmel_r2 57389 match:sim4:na_gb.tpa.dmel 2260 match:sim4:na_smallRNA.dros 121 match:sim4:na_transcript_dmel_r31 86217 match:sim4:na_transcript_dmel_r32 89637 match:sim4tandem:na_gb.dmel 82109 match:tRNAscan-SE 295 match:tblastx:na_agambiae 101190 match:tblastx:na_dbEST.insect 51079 match:tblastx:na_dpse 263465 mature_peptide 7 miRNA 66 ncRNA 99 oligo 197525 point_mutation 1000 polyA_site 126 protein_binding_site 1359 pseudogene 49 rRNA 96 region 26 regulatory_region 219 repeat_region 20928 rescue_fragment 207 scaffold 436 sequence_variant 348 snRNA 46 snoRNA 63 source 7 tRNA 294 transcription_start_site 36921 transposable_element 6006 transposable_element_insertion_site 33268 #================================================== # Chromosome 2L BAC 181 CDS 3492 aberration_junction 25 chromosome_arm 1 chromosome_band 806 enhancer 5 gene 2569 insertion_site 243 mRNA 3625 match:RNAiHDP 38 match:assembly:path 83 match:augustus 8569 match:blastx:aa_SPTR.dmel 69990 match:blastx:aa_SPTR.insect 7452 match:blastx:aa_SPTR.othinv 9705 match:blastx:aa_SPTR.othvert 7622 match:blastx:aa_SPTR.plant 5004 match:blastx:aa_SPTR.primate 9588 match:blastx:aa_SPTR.rodent 9941 match:blastx:aa_SPTR.worm 6118 match:blastx:aa_SPTR.yeast 2374 match:genscan 13635 match:sim4:na_ARGs.dros 1851 match:sim4:na_ARGsCDS.dros 1472 match:sim4:na_DGC_dros 107 match:sim4:na_dbEST.diff.dmel 37577 match:sim4:na_dbEST.same.dmel 30796 match:sim4:na_gadfly_dmel_r2 9910 match:sim4:na_gb.tpa.dmel 363 match:sim4:na_smallRNA.dros 46 match:sim4:na_transcript_dmel_r31 15221 match:sim4:na_transcript_dmel_r32 16050 match:sim4tandem:na_gb.dmel 13677 match:tRNAscan-SE 40 match:tblastx:na_agambiae 21593 match:tblastx:na_dbEST.insect 10191 match:tblastx:na_dpse 49872 mature_peptide 2 miRNA 12 ncRNA 25 oligo 35420 point_mutation 250 polyA_site 47 protein_binding_site 186 pseudogene 15 region 11 regulatory_region 27 repeat_region 1726 rescue_fragment 49 scaffold 83 sequence_variant 98 snRNA 32 snoRNA 6 source 1 tRNA 41 transcription_start_site 6850 transposable_element 1016 transposable_element_insertion_site 6206 #================================================== # Chromosome 2R BAC 167 CDS 3876 DNA_motif 1 aberration_junction 15 chromosome_arm 1 chromosome_band 1138 enhancer 14 gene 2709 insertion_site 160 mRNA 4154 match:RNAiHDP 38 match:assembly:path 75 match:augustus 10272 match:blastx:aa_SPTR.dmel 74608 match:blastx:aa_SPTR.insect 7749 match:blastx:aa_SPTR.othinv 10425 match:blastx:aa_SPTR.othvert 7945 match:blastx:aa_SPTR.plant 5128 match:blastx:aa_SPTR.primate 10583 match:blastx:aa_SPTR.rodent 10846 match:blastx:aa_SPTR.worm 6613 match:blastx:aa_SPTR.yeast 2164 match:genie 10660 match:genscan 13865 match:repeatmasker 7 match:sim4:na_ARGs.dros 1690 match:sim4:na_ARGsCDS.dros 1473 match:sim4:na_DGC_dros 128 match:sim4:na_dbEST.diff.dmel 37625 match:sim4:na_dbEST.same.dmel 35084 match:sim4:na_gadfly_dmel_r2 12210 match:sim4:na_gb.tpa.dmel 409 match:sim4:na_smallRNA.dros 23 match:sim4:na_transcript_dmel_r31 18650 match:sim4:na_transcript_dmel_r32 19122 match:sim4tandem:na_gb.dmel 17058 match:tRNAscan-SE 100 match:tblastx:na_agambiae 20514 match:tblastx:na_dbEST.insect 9846 match:tblastx:na_dpse 52828 mature_peptide 4 miRNA 22 ncRNA 19 oligo 38879 point_mutation 232 polyA_site 36 protein_binding_site 248 pseudogene 13 rRNA 96 region 5 regulatory_region 40 repeat_region 5108 rescue_fragment 42 scaffold 73 sequence_variant 69 snoRNA 29 source 1 tRNA 98 transcription_start_site 5700 transposable_element 1481 transposable_element_insertion_site 6991 #================================================== # Chromosome 3L BAC 32 CDS 3705 DNA_motif 4 aberration_junction 12 chromosome_arm 1 chromosome_band 885 enhancer 1 gene 2664 insertion_site 41 mRNA 3805 match:RNAiHDP 100 match:assembly:path 84 match:augustus 9035 match:blastx:aa_SPTR.dmel 61586 match:blastx:aa_SPTR.insect 6294 match:blastx:aa_SPTR.othinv 9453 match:blastx:aa_SPTR.othvert 6856 match:blastx:aa_SPTR.plant 4330 match:blastx:aa_SPTR.primate 9380 match:blastx:aa_SPTR.rodent 9639 match:blastx:aa_SPTR.worm 5393 match:blastx:aa_SPTR.yeast 2024 match:genie 9478 match:genscan 14226 match:sim4:na_ARGs.dros 245 match:sim4:na_ARGsCDS.dros 207 match:sim4:na_DGC_dros 157 match:sim4:na_dbEST.diff.dmel 41119 match:sim4:na_dbEST.same.dmel 34155 match:sim4:na_gadfly_dmel_r2 10967 match:sim4:na_gb.tpa.dmel 510 match:sim4:na_smallRNA.dros 4 match:sim4:na_transcript_dmel_r31 15875 match:sim4:na_transcript_dmel_r32 16126 match:sim4tandem:na_gb.dmel 14541 match:tRNAscan-SE 49 match:tblastx:na_agambiae 17793 match:tblastx:na_dbEST.insect 9631 match:tblastx:na_dpse 49825 mature_peptide 1 miRNA 15 ncRNA 19 oligo 38372 point_mutation 157 polyA_site 7 protein_binding_site 299 pseudogene 5 region 5 regulatory_region 28 repeat_region 4650 rescue_fragment 13 scaffold 83 sequence_variant 35 snRNA 3 snoRNA 9 source 1 tRNA 49 transcription_start_site 7829 transposable_element 1169 transposable_element_insertion_site 6408 #================================================== # Chromosome 3R BAC 235 CDS 4750 aberration_junction 51 chromosome_arm 1 chromosome_band 1178 enhancer 6 gene 3396 insertion_site 110 mRNA 4898 match:RNAiHDP 60 match:assembly:path 118 match:augustus 12472 match:blastx:aa_SPTR.dmel 99032 match:blastx:aa_SPTR.insect 9684 match:blastx:aa_SPTR.othinv 13802 match:blastx:aa_SPTR.othvert 10413 match:blastx:aa_SPTR.plant 6338 match:blastx:aa_SPTR.primate 13235 match:blastx:aa_SPTR.rodent 13557 match:blastx:aa_SPTR.worm 8246 match:blastx:aa_SPTR.yeast 2827 match:genie 12822 match:genscan 18051 match:sim4:na_ARGs.dros 1200 match:sim4:na_ARGsCDS.dros 1061 match:sim4:na_DGC_dros 196 match:sim4:na_dbEST.diff.dmel 46880 match:sim4:na_dbEST.same.dmel 41722 match:sim4:na_gadfly_dmel_r2 14431 match:sim4:na_gb.tpa.dmel 652 match:sim4:na_smallRNA.dros 38 match:sim4:na_transcript_dmel_r31 21421 match:sim4:na_transcript_dmel_r32 22274 match:sim4tandem:na_gb.dmel 19905 match:tRNAscan-SE 80 match:tblastx:na_agambiae 25021 match:tblastx:na_dbEST.insect 12326 match:tblastx:na_dpse 71436 miRNA 12 ncRNA 21 oligo 49768 point_mutation 255 polyA_site 28 protein_binding_site 520 pseudogene 11 region 1 regulatory_region 106 repeat_region 3672 rescue_fragment 56 scaffold 118 sequence_variant 103 snRNA 9 snoRNA 9 source 1 tRNA 80 transcription_start_site 8122 transposable_element 729 transposable_element_insertion_site 7493 #================================================== # Chromosome 4 BAC 17 CDS 206 aberration_junction 1 chromosome_arm 1 chromosome_band 44 enhancer 1 gene 81 insertion_site 2 mRNA 210 match:HDP 164 match:augustus 37 match:blastx:aa_SPTR.dmel 4777 match:blastx:aa_SPTR.insect 480 match:blastx:aa_SPTR.othinv 611 match:blastx:aa_SPTR.othvert 593 match:blastx:aa_SPTR.plant 168 match:blastx:aa_SPTR.primate 755 match:blastx:aa_SPTR.rodent 511 match:blastx:aa_SPTR.worm 566 match:blastx:aa_SPTR.yeast 127 match:genie 72 match:genscan 580 match:sim4:na_DGC_dros 7 match:sim4:na_dbEST.diff.dmel 3696 match:sim4:na_dbEST.same.dmel 1541 match:sim4:na_gadfly_dmel_r2 686 match:sim4:na_gb.tpa.dmel 7 match:sim4:na_transcript_dmel_r31 1738 match:sim4:na_transcript_dmel_r32 1723 match:sim4tandem:na_gb.dmel 1517 match:tblastx:na_agambiae 1139 match:tblastx:na_dbEST.insect 630 match:tblastx:na_dpse 1796 ncRNA 1 oligo 1249 point_mutation 2 protein_binding_site 2 pseudogene 3 repeat_region 882 scaffold 5 sequence_variant 3 source 1 transcription_start_site 690 transposable_element 603 transposable_element_insertion_site 183 #================================================== # Chromosome U chromosome_arm 1 match:augustus 42 source 1 #================================================== # Chromosome X BAC 78 CDS 3149 aberration_junction 23 chromosome_arm 1 chromosome_band 1016 enhancer 6 gene 2248 insertion_site 37 mRNA 3213 match:RNAiHDP 58 match:assembly:path 74 match:augustus 8021 match:blastx:aa_SPTR.dmel 52996 match:blastx:aa_SPTR.insect 5314 match:blastx:aa_SPTR.othinv 8068 match:blastx:aa_SPTR.othvert 6436 match:blastx:aa_SPTR.plant 3865 match:blastx:aa_SPTR.primate 8418 match:blastx:aa_SPTR.rodent 8650 match:blastx:aa_SPTR.worm 5261 match:blastx:aa_SPTR.yeast 1855 match:genie 8189 match:genscan 12418 match:repeatmasker 21 match:sim4:na_ARGs.dros 625 match:sim4:na_ARGsCDS.dros 497 match:sim4:na_DGC_dros 110 match:sim4:na_dbEST.diff.dmel 35054 match:sim4:na_dbEST.same.dmel 29941 match:sim4:na_gadfly_dmel_r2 9185 match:sim4:na_gb.tpa.dmel 319 match:sim4:na_smallRNA.dros 10 match:sim4:na_transcript_dmel_r31 13312 match:sim4:na_transcript_dmel_r32 14342 match:sim4tandem:na_gb.dmel 15411 match:tRNAscan-SE 26 match:tblastx:na_agambiae 15130 match:tblastx:na_dbEST.insect 8455 match:tblastx:na_dpse 37708 miRNA 5 ncRNA 14 oligo 33837 point_mutation 104 polyA_site 8 protein_binding_site 104 pseudogene 2 region 4 regulatory_region 18 repeat_region 4890 rescue_fragment 47 scaffold 74 sequence_variant 40 snRNA 2 snoRNA 10 source 1 tRNA 26 transcription_start_site 7730 transposable_element 1008 transposable_element_insertion_site 5987 #==================================================