# Genome feature summary of dmel from Genome Feature merge (genomic and cytology features) [20040821] # ALL chromosomes CDS 430 chromosome_arm 6 gene 320 mRNA 446 match:HDP 187 match:blastx:aa_SP.hyp.dros 5 match:blastx:aa_SP.real.dros 4962 match:blastx:aa_SPTR.dros 17736 match:blastx:aa_SPTR.insect 4441 match:blastx:aa_SPTR.othinv 2468 match:blastx:aa_SPTR.othvert 2036 match:blastx:aa_SPTR.plant 563 match:blastx:aa_SPTR.primate 673 match:blastx:aa_SPTR.rodent 619 match:blastx:aa_SPTR.worm 2403 match:blastx:aa_SPTR.yeast 975 match:blastx:aa_TR.real.dros 5661 match:blastx:aa_users_i.dros 7 match:genscan 1734 match:groupest:na_DGC.dros 720 match:groupest:na_EST.all_nr.dros 2483 match:groupest:na_EST.complete.dros 2161 match:piecegenie 443 match:piler 107 match:piler_raw 3765 match:repeatmasker 3683 match:sim4:P_U.fa 6949 match:sim4:gad_mrna.r3 4431 match:sim4:na_ARGsregion.dros 19 match:sim4:na_DGC.dros 938 match:sim4:na_DGC_dros 841 match:sim4:na_EST.all_nr.dros 5627 match:sim4:na_EST.complete.dros 11410 match:sim4:na_STS.dros 13983 match:sim4:na_cDNA.dros 131 match:sim4:na_gadfly_dmel_r2 121 match:sim4:na_gb.dmel 1257 match:sim4:na_gb.dros 987 match:sim4:na_pe.dros 877 match:sim4:na_snRNA.dros 38 match:sim4:r3_noncoding.FASTA 16 match:tblastx:P_U.fa 2526 match:tblastx:na_dbEST.insect 3882 match:tblastx:na_unigene.rodent 303 ncRNA 8 pseudogene 1 rRNA 6 repeat_region 5504 source 6 transcription_start_site 3254 transposable_element 63 #================================================== # Chromosome 2h CDS 91 chromosome_arm 1 gene 51 mRNA 92 match:HDP 22 match:blastx:aa_SP.real.dros 751 match:blastx:aa_SPTR.dros 2716 match:blastx:aa_SPTR.insect 681 match:blastx:aa_SPTR.othinv 424 match:blastx:aa_SPTR.othvert 370 match:blastx:aa_SPTR.plant 62 match:blastx:aa_SPTR.primate 155 match:blastx:aa_SPTR.rodent 126 match:blastx:aa_SPTR.worm 388 match:blastx:aa_SPTR.yeast 179 match:blastx:aa_TR.real.dros 2551 match:blastx:aa_users_i.dros 1 match:genscan 267 match:groupest:na_DGC.dros 116 match:groupest:na_EST.all_nr.dros 390 match:groupest:na_EST.complete.dros 374 match:piecegenie 71 match:piler 20 match:repeatmasker 656 match:sim4:P_U.fa 766 match:sim4:gad_mrna.r3 812 match:sim4:na_ARGsregion.dros 4 match:sim4:na_DGC.dros 150 match:sim4:na_DGC_dros 116 match:sim4:na_EST.all_nr.dros 2382 match:sim4:na_EST.complete.dros 2504 match:sim4:na_STS.dros 2002 match:sim4:na_cDNA.dros 42 match:sim4:na_gadfly_dmel_r2 33 match:sim4:na_gb.dmel 180 match:sim4:na_gb.dros 140 match:sim4:na_pe.dros 86 match:sim4:na_snRNA.dros 3 match:sim4:r3_noncoding.FASTA 5 match:tblastx:P_U.fa 872 match:tblastx:na_dbEST.insect 535 match:tblastx:na_unigene.rodent 75 pseudogene 1 repeat_region 977 source 1 transcription_start_site 544 transposable_element 4 #================================================== # Chromosome 3h CDS 66 chromosome_arm 1 gene 51 mRNA 66 match:HDP 52 match:blastx:aa_SP.hyp.dros 3 match:blastx:aa_SP.real.dros 1278 match:blastx:aa_SPTR.dros 2135 match:blastx:aa_SPTR.insect 768 match:blastx:aa_SPTR.othinv 401 match:blastx:aa_SPTR.othvert 467 match:blastx:aa_SPTR.plant 67 match:blastx:aa_SPTR.primate 110 match:blastx:aa_SPTR.rodent 117 match:blastx:aa_SPTR.worm 405 match:blastx:aa_SPTR.yeast 153 match:blastx:aa_TR.real.dros 2179 match:genscan 421 match:groupest:na_DGC.dros 140 match:groupest:na_EST.all_nr.dros 516 match:groupest:na_EST.complete.dros 466 match:piecegenie 94 match:piler 28 match:piler_raw 608 match:repeatmasker 999 match:sim4:P_U.fa 1401 match:sim4:gad_mrna.r3 1386 match:sim4:na_DGC.dros 191 match:sim4:na_DGC_dros 178 match:sim4:na_EST.all_nr.dros 2419 match:sim4:na_EST.complete.dros 2364 match:sim4:na_STS.dros 3806 match:sim4:na_gadfly_dmel_r2 24 match:sim4:na_gb.dmel 331 match:sim4:na_gb.dros 243 match:sim4:na_pe.dros 227 match:sim4:na_snRNA.dros 17 match:sim4:r3_noncoding.FASTA 2 match:tblastx:P_U.fa 1032 match:tblastx:na_dbEST.insect 820 match:tblastx:na_unigene.rodent 56 repeat_region 1534 source 1 transcription_start_site 883 transposable_element 8 #================================================== # Chromosome 4h CDS 10 chromosome_arm 1 gene 7 mRNA 10 match:blastx:aa_SP.real.dros 44 match:blastx:aa_SPTR.dros 160 match:blastx:aa_SPTR.insect 27 match:blastx:aa_SPTR.othinv 21 match:blastx:aa_SPTR.othvert 17 match:blastx:aa_SPTR.plant 9 match:blastx:aa_SPTR.primate 18 match:blastx:aa_SPTR.rodent 15 match:blastx:aa_SPTR.worm 18 match:blastx:aa_SPTR.yeast 12 match:blastx:aa_TR.real.dros 142 match:genscan 14 match:groupest:na_DGC.dros 7 match:groupest:na_EST.all_nr.dros 38 match:groupest:na_EST.complete.dros 27 match:piecegenie 5 match:piler 2 match:repeatmasker 36 match:sim4:P_U.fa 130 match:sim4:gad_mrna.r3 119 match:sim4:na_DGC.dros 8 match:sim4:na_DGC_dros 7 match:sim4:na_EST.all_nr.dros 254 match:sim4:na_EST.complete.dros 227 match:sim4:na_STS.dros 70 match:sim4:na_cDNA.dros 4 match:sim4:na_gb.dmel 6 match:sim4:na_gb.dros 3 match:sim4:na_pe.dros 6 match:sim4:na_snRNA.dros 1 match:sim4:r3_noncoding.FASTA 1 match:tblastx:P_U.fa 86 match:tblastx:na_dbEST.insect 23 match:tblastx:na_unigene.rodent 6 repeat_region 53 source 1 transcription_start_site 18 #================================================== # Chromosome U CDS 203 chromosome_arm 1 gene 174 mRNA 215 match:HDP 97 match:blastx:aa_SP.hyp.dros 1 match:blastx:aa_SP.real.dros 2713 match:blastx:aa_SPTR.dros 11747 match:blastx:aa_SPTR.insect 2747 match:blastx:aa_SPTR.othinv 1496 match:blastx:aa_SPTR.othvert 1087 match:blastx:aa_SPTR.plant 368 match:blastx:aa_SPTR.primate 322 match:blastx:aa_SPTR.rodent 309 match:blastx:aa_SPTR.worm 1441 match:blastx:aa_SPTR.yeast 589 match:blastx:aa_users_i.dros 6 match:genscan 940 match:groupest:na_DGC.dros 410 match:groupest:na_EST.all_nr.dros 1384 match:groupest:na_EST.complete.dros 1176 match:piecegenie 234 match:piler 56 match:piler_raw 3157 match:repeatmasker 1780 match:sim4:P_U.fa 4347 match:sim4:gad_mrna.r3 1684 match:sim4:na_ARGsregion.dros 15 match:sim4:na_DGC.dros 531 match:sim4:na_DGC_dros 504 match:sim4:na_EST.complete.dros 5788 match:sim4:na_STS.dros 7213 match:sim4:na_cDNA.dros 67 match:sim4:na_gadfly_dmel_r2 47 match:sim4:na_gb.dmel 660 match:sim4:na_gb.dros 589 match:sim4:na_pe.dros 500 match:sim4:na_snRNA.dros 14 match:sim4:r3_noncoding.FASTA 8 match:tblastx:P_U.fa 420 match:tblastx:na_dbEST.insect 2347 match:tblastx:na_unigene.rodent 123 ncRNA 5 rRNA 6 repeat_region 2673 source 1 transcription_start_site 1606 transposable_element 50 #================================================== # Chromosome Xh CDS 50 chromosome_arm 1 gene 27 mRNA 53 match:HDP 11 match:blastx:aa_SP.hyp.dros 1 match:blastx:aa_SP.real.dros 67 match:blastx:aa_SPTR.dros 366 match:blastx:aa_SPTR.insect 86 match:blastx:aa_SPTR.othinv 52 match:blastx:aa_SPTR.othvert 48 match:blastx:aa_SPTR.plant 20 match:blastx:aa_SPTR.primate 43 match:blastx:aa_SPTR.rodent 33 match:blastx:aa_SPTR.worm 75 match:blastx:aa_SPTR.yeast 10 match:blastx:aa_TR.real.dros 256 match:genscan 53 match:groupest:na_DGC.dros 38 match:groupest:na_EST.all_nr.dros 106 match:groupest:na_EST.complete.dros 89 match:piecegenie 30 match:piler 1 match:repeatmasker 135 match:sim4:P_U.fa 50 match:sim4:gad_mrna.r3 211 match:sim4:na_DGC.dros 46 match:sim4:na_DGC_dros 23 match:sim4:na_EST.all_nr.dros 468 match:sim4:na_EST.complete.dros 447 match:sim4:na_STS.dros 574 match:sim4:na_cDNA.dros 18 match:sim4:na_gadfly_dmel_r2 16 match:sim4:na_gb.dmel 54 match:sim4:na_gb.dros 12 match:sim4:na_pe.dros 3 match:sim4:na_snRNA.dros 2 match:tblastx:P_U.fa 46 match:tblastx:na_dbEST.insect 63 match:tblastx:na_unigene.rodent 29 ncRNA 3 repeat_region 130 source 1 transcription_start_site 132 transposable_element 1 #================================================== # Chromosome Yh CDS 10 chromosome_arm 1 gene 10 mRNA 10 match:HDP 5 match:blastx:aa_SP.real.dros 109 match:blastx:aa_SPTR.dros 612 match:blastx:aa_SPTR.insect 132 match:blastx:aa_SPTR.othinv 74 match:blastx:aa_SPTR.othvert 47 match:blastx:aa_SPTR.plant 37 match:blastx:aa_SPTR.primate 25 match:blastx:aa_SPTR.rodent 19 match:blastx:aa_SPTR.worm 76 match:blastx:aa_SPTR.yeast 32 match:blastx:aa_TR.real.dros 533 match:genscan 39 match:groupest:na_DGC.dros 9 match:groupest:na_EST.all_nr.dros 49 match:groupest:na_EST.complete.dros 29 match:piecegenie 9 match:repeatmasker 77 match:sim4:P_U.fa 255 match:sim4:gad_mrna.r3 219 match:sim4:na_DGC.dros 12 match:sim4:na_DGC_dros 13 match:sim4:na_EST.all_nr.dros 104 match:sim4:na_EST.complete.dros 80 match:sim4:na_STS.dros 318 match:sim4:na_gadfly_dmel_r2 1 match:sim4:na_gb.dmel 26 match:sim4:na_pe.dros 55 match:sim4:na_snRNA.dros 1 match:tblastx:P_U.fa 70 match:tblastx:na_dbEST.insect 94 match:tblastx:na_unigene.rodent 14 repeat_region 137 source 1 transcription_start_site 71 #==================================================