BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA140937|DMAA40937 CK01027.5prime CK Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone CK01027 5prime, mRNA sequence. (340 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG4357-RB feature: mRNA loc=3L:complement(12326193..12326504,123... 513 e-145 CG4357-RA feature: mRNA loc=3L:complement(12326193..12326504,123... 513 e-145 >CG4357-RB feature: mRNA loc=3L:complement(12326193..12326504,12326596..12326831, 12327484..12327713,12327782..12327879,12329308..12330118, 12330181..12330316,12330517..12330626,12330687..12330829, 12330902..12331067,12331125..12331267,12331332..12331446, 12331504..12331757,12331835..12332093,12333548..12333662, 12333984..12334163,12336686..12337191, 12345200..12345379);ID=FBan0004357;gene_id=FBgn0036279;ge ne_sym=CG4357;sym=CG4357;scaffold=AE003541;len=3994 Length = 3994 Score = 513 bits (259), Expect = e-145 Identities = 262/263 (99%) Strand = Plus / Plus Query: 1 gcgccatcctctgtgtggccgtcatgttccttatctcgtgggccacagcgctcatcacct 60 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 2336 gcgccatcctctgtgtggccgtcatgttcctcatctcgtgggccacagcgctcatcacct 2395 Query: 61 ttgccgccgtgctggctctgtacttaattgtggcctaccggaaaccggatgtcaactggg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2396 ttgccgccgtgctggctctgtacttaattgtggcctaccggaaaccggatgtcaactggg 2455 Query: 121 gctccaccacccaggctcagacgtacaagaacgccctgatgtcggtgcagcagctgaaca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2456 gctccaccacccaggctcagacgtacaagaacgccctgatgtcggtgcagcagctgaaca 2515 Query: 181 atgtggaggagcacgtgaagaactaccggccacagatcctggttctttccggtttgccca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2516 atgtggaggagcacgtgaagaactaccggccacagatcctggttctttccggtttgccca 2575 Query: 241 acacacggccggtgctcgtcgac 263 ||||||||||||||||||||||| Sbjct: 2576 acacacggccggtgctcgtcgac 2598 >CG4357-RA feature: mRNA loc=3L:complement(12326193..12326504,12326596..12326831, 12327484..12327713,12327782..12327879,12329308..12330118, 12330181..12330316,12330517..12330626,12330687..12330829, 12330902..12331067,12331125..12331267,12331332..12331446, 12331504..12331757,12331835..12332093,12333548..12333662, 12333984..12334163,12336686..12337191, 12348870..12348986);ID=FBan0004357;gene_id=FBgn0036279;ge ne_sym=CG4357;sym=CG4357;scaffold=AE003541;len=3931 Length = 3931 Score = 513 bits (259), Expect = e-145 Identities = 262/263 (99%) Strand = Plus / Plus Query: 1 gcgccatcctctgtgtggccgtcatgttccttatctcgtgggccacagcgctcatcacct 60 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 2273 gcgccatcctctgtgtggccgtcatgttcctcatctcgtgggccacagcgctcatcacct 2332 Query: 61 ttgccgccgtgctggctctgtacttaattgtggcctaccggaaaccggatgtcaactggg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2333 ttgccgccgtgctggctctgtacttaattgtggcctaccggaaaccggatgtcaactggg 2392 Query: 121 gctccaccacccaggctcagacgtacaagaacgccctgatgtcggtgcagcagctgaaca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2393 gctccaccacccaggctcagacgtacaagaacgccctgatgtcggtgcagcagctgaaca 2452 Query: 181 atgtggaggagcacgtgaagaactaccggccacagatcctggttctttccggtttgccca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2453 atgtggaggagcacgtgaagaactaccggccacagatcctggttctttccggtttgccca 2512 Query: 241 acacacggccggtgctcgtcgac 263 ||||||||||||||||||||||| Sbjct: 2513 acacacggccggtgctcgtcgac 2535 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8677 Number of Sequences: 18737 Number of extensions: 8677 Number of successful extensions: 671 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 669 Number of HSP's gapped (non-prelim): 2 length of query: 340 length of database: 41,270,998 effective HSP length: 16 effective length of query: 324 effective length of database: 40,971,206 effective search space: 13274670744 effective search space used: 13274670744 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA141204|DMAA41204 CK01340.5prime CK Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone CK01340 5prime, mRNA sequence. (649 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG4686-RA feature: mRNA loc=3R:join(15690196..15690664,15690728.... 624 e-178 >CG4686-RA feature: mRNA loc=3R:join(15690196..15690664,15690728..15691036, 15692153..15692538);ID=FBan0004686;gene_id=FBgn0038739;ge ne_sym=CG4686;sym=CG4686;scaffold=AE003728;len=1164 Length = 1164 Score = 624 bits (315), Expect = e-178 Identities = 368/386 (95%), Gaps = 3/386 (0%) Strand = Plus / Minus Query: 257 tatatacactaananattgtacgcatttaactcaaaagtatcttccattagctgcaaagc 316 |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1164 tatatacactaagagattgtacgcatttaactcaaaagtatcttccattagctgcaaagc 1105 Query: 317 cctcactataattattgtaaataatggctaaaagcggatatagtaactcatatttagttg 376 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1104 cctcactataattattgtaaataatggctaaaagcggatatagtaactcatatttagttg 1045 Query: 377 atgttgtattatgttanatnatgttgtatgttaganttggcttaactttatttgcctctg 436 |||||||||||||||| || ||||||||||||||| |||||||| ||||||||||||||| Sbjct: 1044 atgttgtattatgttagatgatgttgtatgttagagttggcttagctttatttgcctctg 985 Query: 437 cactaaattgcagttcagcatgtgctacatggaatatanataggtggcctgccccgcgca 496 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 984 cactaaattgcagttcagcatgtgctacatggaatatagataggtggcctgccccgcgca 925 Query: 497 tcctacaggaccagcgacagccacgcggccatcangcanaatcctccgacngtcgcgtta 556 |||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||| || Sbjct: 924 tcctacaggaccagcgacagccacgcggccatcaggcagaatcctccgacggtcgcg-ta 866 Query: 557 cggttgcanacgcttctccccantcaaagcgcggtnntacatgcagccgctgaaaagca- 615 |||||||| ||||||||| ||| |||||||||||| |||||||||||||||||||||| Sbjct: 865 cggttgcagacgcttctcgccagtcaaagcgcggtagtacatgcagccgctgaaaagcat 806 Query: 616 catgccccgtaatcatcaaagtgcca 641 |||| ||||||||||||||||||||| Sbjct: 805 catg-cccgtaatcatcaaagtgcca 781 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,866 Number of Sequences: 18737 Number of extensions: 10866 Number of successful extensions: 264 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 261 Number of HSP's gapped (non-prelim): 1 length of query: 649 length of database: 41,270,998 effective HSP length: 17 effective length of query: 632 effective length of database: 40,952,469 effective search space: 25881960408 effective search space used: 25881960408 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA141235|DMAA41235 CK01423.5prime CK Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone CK01423 5prime, mRNA sequence. (690 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG33253-RA feature: mRNA loc=X:join(18914384..18914685,18916650.... 1138 0.0 >CG33253-RA feature: mRNA loc=X:join(18914384..18914685,18916650..18917166, 18917238..18917403, 18917494..18918239);ID=FBan0033253;gene_id=FBgn0053253;ge ne_sym=CG33253;sym=CG33253;scaffold=AE003511;len=1731 Length = 1731 Score = 1138 bits (574), Expect = 0.0 Identities = 622/639 (97%), Gaps = 2/639 (0%) Strand = Plus / Plus Query: 54 ggatggggcgactgcgcagcggcggagcccgtggtcccggggtcttctttgtgctgccct 113 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 438 ggatggggcgactgcgcagcggcggagcccgtggtcccggggtcttctttgtgctgccct 497 Query: 114 gcgtggacgactactatccggtggatctgcgcaccgtctcctttgacgtgccgccgcagg 173 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 498 gcgtggacgactactatccggtggatctgcgcaccgtctcctttgacgtgccgccgcagg 557 Query: 174 aggtgctctccaaggactcggttactgtgacggtagatgcggttgtctactaccgcatca 233 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 558 aggtgctctccaaggactcggttactgtgacggtagatgcggttgtctactaccgcatca 617 Query: 234 gcgatcccctcaaggcggtcatccaggtgtacaattacagccattcgacgagtctcctgg 293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 618 gcgatcccctcaaggcggtcatccaggtgtacaattacagccattcgacgagtctcctgg 677 Query: 294 cggccaccacgctgcgcaatgtgctcggcaccagaaatctgtccgagctgctgaccgaac 353 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 678 cggccaccacgctgcgcaatgtgctcggcaccaggaatctgtccgagctgctgaccgaac 737 Query: 354 gcgagaccatctcgcacaccatgcagatgtccctggacnaggccaccgatccctggggcg 413 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 738 gcgagaccatctcgcacaccatgcagatgtccctggacgaggccaccgatccctggggcg 797 Query: 414 ttaaggtggagcgcgtgganatcaaggacgtatccttgccaactgccctccancgggcga 473 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct: 798 ttaaggtggagcgcgtggagatcaaggacgtatccttgccaactgccctccagcgggcga 857 Query: 474 tggccgccgaggcggangcancganggaggcgcgggccaangtcattgccgccgagggcg 533 |||||||||||||||| ||| ||| ||||||||||||||| ||||||||||||||||||| Sbjct: 858 tggccgccgaggcggaggcagcgagggaggcgcgggccaaggtcattgccgccgagggcg 917 Query: 534 aaatgaa-tcgtcgagggctctgcgcgangc-tccgaaatcatctcggccagtccatccg 591 | ||||| |||||||||||||||||||| || ||||| |||||||||||||||||||||| Sbjct: 918 agatgaagtcgtcgagggctctgcgcgaggcttccgagatcatctcggccagtccatccg 977 Query: 592 ccctgcagttgcgatacttgcaaacactgancancatttcaaccgagaaaaattcgacca 651 |||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||| Sbjct: 978 ccctgcagttgcgatacttgcaaacactgagcagcatttcaaccgagaagaattcgacca 1037 Query: 652 tcatcttcccgctgcccatgganctgctcacgcccttcc 690 |||||||||||||||||||||| |||||||||||||||| Sbjct: 1038 tcatcttcccgctgcccatggagctgctcacgcccttcc 1076 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,254 Number of Sequences: 18737 Number of extensions: 16254 Number of successful extensions: 426 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 423 Number of HSP's gapped (non-prelim): 1 length of query: 690 length of database: 41,270,998 effective HSP length: 17 effective length of query: 673 effective length of database: 40,952,469 effective search space: 27561011637 effective search space used: 27561011637 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA141236|DMAA41236 CK01423.3prime CK Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone CK01423 3prime, mRNA sequence. (717 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG33253-RA feature: mRNA loc=X:join(18914384..18914685,18916650.... 597 e-170 >CG33253-RA feature: mRNA loc=X:join(18914384..18914685,18916650..18917166, 18917238..18917403, 18917494..18918239);ID=FBan0033253;gene_id=FBgn0053253;ge ne_sym=CG33253;sym=CG33253;scaffold=AE003511;len=1731 Length = 1731 Score = 597 bits (301), Expect = e-170 Identities = 354/370 (95%), Gaps = 2/370 (0%) Strand = Plus / Minus Query: 225 tttatttttaagtccgaaccatgtttgaatctctccaaaatctagggaattccatggcac 284 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1505 tttatttttaagtccgaaccatgtttgaatctctccagaatctagggaattccatggcac 1446 Query: 285 tttcattcgaattcattggtgactcattttccggattttccggccagttccgctttctgt 344 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 1445 tttcattcgaattcattggtgactcattttccggattttccggacagttccgctttctgt 1386 Query: 345 cgctgctgccgccgttccactaaagcaagaaacccacgatgtcgtcatcgtcatccaccg 404 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| Sbjct: 1385 cgctgctgccgccgttccactagagcaagaaacccacgatgtcgtcatcgtcatccgccg 1326 Query: 405 ctcccgctgcagccgctccgcttcgctgttgcttctgctgacgctgcagctcgcagcgat 464 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1325 ctcccgctgcagccgctccgcttcgctgttgcttctgctgacgctgcagctcgcagcgat 1266 Query: 465 gcagtgcctccaaatatggttgcagcaccgacatcga-cgtcactgggtggtgttggtgc 523 |||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||| Sbjct: 1265 gcagtgcctccagatatggttgcagcaccgacatcgagcgtcact-ggtggtgttggtgc 1207 Query: 524 tggtgtcnaaggaatggcgtgccangaaccccaggatgttgttgttgttggtgctgangc 583 |||||| | ||| |||||||||| || || |||||||||||||||||||||||||| || Sbjct: 1206 gggtgtcgatggagtggcgtgccaggagccgcaggatgttgttgttgttggtgctgatgc 1147 Query: 584 tgctggtgtt 593 ||||| |||| Sbjct: 1146 tgctgctgtt 1137 Score = 400 bits (202), Expect = e-111 Identities = 205/206 (99%) Strand = Plus / Minus Query: 1 ctgaatcatttggtttatttaaatggttagcttttaccctggtttgtagttagctattgt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1723 ctgaatcatttggtttatttaaatggttagcttttaccctggtttgtagttagctattgt 1664 Query: 61 tattaattcttaagatacaaacaaataatattggttattttaaatataacgtctctactt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1663 tattaattcttaagatacaaacaaataatattggttattttaaatataacgtctctactt 1604 Query: 121 aaaacgactgtgaatgaagaaggaaaagctttggaaaagcctcagttactattgcatact 180 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1603 aaaacgactgtgaatgaagaaggaaaagccttggaaaagcctcagttactattgcatact 1544 Query: 181 aaattcgacatattagaataaattct 206 |||||||||||||||||||||||||| Sbjct: 1543 aaattcgacatattagaataaattct 1518 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 27,120 Number of Sequences: 18737 Number of extensions: 27120 Number of successful extensions: 2562 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2558 Number of HSP's gapped (non-prelim): 3 length of query: 717 length of database: 41,270,998 effective HSP length: 17 effective length of query: 700 effective length of database: 40,952,469 effective search space: 28666728300 effective search space used: 28666728300 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA141245|DMAA41245 CK01680.3prime CK Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone CK01680 3prime, mRNA sequence. (571 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value scpr-C-RA feature: mRNA loc=3R:join(7051260..7051389,7051443..70... 932 0.0 scpr-B-RA feature: mRNA loc=3R:complement(7065774..7066552,70666... 692 0.0 scpr-A-RA feature: mRNA loc=3R:join(7066923..7067055,7067121..70... 682 0.0 >scpr-C-RA feature: mRNA loc=3R:join(7051260..7051389, 7051443..7052330);ID=FBan0005106;gene_id=FBgn0037879;gen e_sym=scpr-C;sym=CG5106;scaffold=AE003690;len=1018 Length = 1018 Score = 932 bits (470), Expect = 0.0 Identities = 545/572 (95%), Gaps = 2/572 (0%) Strand = Plus / Minus Query: 1 acagcaaacataaacaattaaaatttattctttcagcactcttaaactaaaatgttacat 60 |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 910 acagcaaacataaataattaaaatttattcttttagcactcttaaactaaaatgttacat 851 Query: 61 atnaatcaaattccattgtcccatcaatcgaagtccattccatgcctacatcgtctgtgt 120 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 850 attaatcaaattccattgtcccatcaatcgaagtccattccatgcctacatcgtctgtgt 791 Query: 121 gttctcgatgaccttctcgttgtcgtaaatctccttggcgtaccacaggttggggtagtc 180 ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct: 790 gttctcgatgaccttctcgttgtcgtagatctccttggcgtagcacaggttggggtagtc 731 Query: 181 gtaggcagctccataacggttcttgcacccggnggttgcnnnnnnnnnnggagtgtaaac 240 |||||||||||||||||||||||||||||||| |||||| |||||||| || Sbjct: 730 gtaggcagctccataacggttcttgcacccggtggttgccttctctcccggagtgtagac 671 Query: 241 aggctgacccacaatgttcgatgtggcgaagttgcaggtgagtacgaagtggttgtaaaa 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 670 aggctgacccacaatgttcgatgtggcgaagttgcaggtgagtacgaagtggttgtaaaa 611 Query: 301 gtcccgggagaagcgcaccgcggcacatcccacatgggtgttcttctcggccaccgcgat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 610 gtcccgggagaagcgcaccgcggcacatcccacatgggtgttcttctcggccaccgcgat 551 Query: 361 ggtgaacttggtcaccgctttgttgggaagctcctccgggaagctggcgaggatctcggg 420 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 550 ggtgaacttggtcaccgccttgttgggaagctcctccgggaagctggcgaggatctcggg 491 Query: 421 agatgcattcgagcgctcagcaaaccagttctcgatctgctcctttattatttccgcatc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 490 agatgcattcgagcgctcagcaaaccagttctcgatctgctcctttattatttccgcatc 431 Query: 481 ggtgtac-ccgtctcggctccgctgtactggancacggcgttgttctggccggctatgcc 539 ||||||| |||||||||||||||||||||||| ||||||||||||||||||||| | | Sbjct: 430 ggtgtactccgtctcggctccgctgtactggaacacggcgttgttctggccggcgtaggc 371 Query: 540 gantctctcgngtgctgccacatttatctggc 571 || ||||||| ||||||| ||||||||||||| Sbjct: 370 gaatctctcg-gtgctgcgacatttatctggc 340 >scpr-B-RA feature: mRNA loc=3R:complement(7065774..7066552, 7066606..7066731);ID=FBan0017210;gene_id=FBgn0037888;gen e_sym=scpr-B;sym=CG17210;scaffold=AE003690;len=905 Length = 905 Score = 692 bits (349), Expect = 0.0 Identities = 437/468 (93%), Gaps = 2/468 (0%) Strand = Plus / Minus Query: 105 cctacatcgtctgtgtgttctcgatgaccttctcgttgtcgtaaatctccttggcgtacc 164 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct: 802 cctacatcgtctgtgtgttctcgatgaccttctcgttgtcgtagatctccttggcgtagc 743 Query: 165 acaggttggggtagtcgtaggcagctccataacggttcttgcacccggnggttgcnnnnn 224 |||| |||||||||||||||||||||||||| ||||||||||| |||| |||||| Sbjct: 742 acagattggggtagtcgtaggcagctccatatcggttcttgcagccggtggttgccttct 683 Query: 225 nnnnnggagtgtaaacaggctgacccacaatgttcgatgtggcgaagttgcaggtgagta 284 |||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 682 ctcccggagtgtagacaggctgacccacaatgttcgatgtggcgaagttgcaggtgagta 623 Query: 285 cgaagtggttgtaaaagtcccgggagaagcgcaccgcggcacatcccacatgggtgttct 344 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct: 622 cgaagtggttgtaaaagtcccgggagaagcgcacggccgcacatcccacatgggtgttct 563 Query: 345 tctcggccaccgcgatggtgaacttggtcaccgctttgttgggaagctcctccgggaagc 404 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 562 tctcggccaccgcgatggtgaacttggtcaccgccttgttgggaagctcctccgggaagc 503 Query: 405 tggcgaggatctcgggagatgcattcgagcgctcagcaaaccagttctcgatctgctcct 464 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 502 tggcgaggatctcgggagatgcattcgagcgctcagcaaaccagttctcgatctgctcct 443 Query: 465 ttattatttccgcatcggtgtac-ccgtctcggctccgctgtactggancacggcgttgt 523 ||||||||||||||||||||||| | |||||||||||||||||||||| || |||||||| Sbjct: 442 ttattatttccgcatcggtgtactctgtctcggctccgctgtactggaacaaggcgttgt 383 Query: 524 tctggccggctatgccgantctctcgngtgctgccacatttatctggc 571 |||||||||| | ||| ||||||| ||||||| ||||||||||||| Sbjct: 382 tctggccggcgtaggcgaatctctcg-gtgctgcgacatttatctggc 336 >scpr-A-RA feature: mRNA loc=3R:join(7066923..7067055, 7067121..7067863);ID=FBan0005207;gene_id=FBgn0037889;gen e_sym=scpr-A;sym=CG5207;scaffold=AE003690;len=876 Length = 876 Score = 682 bits (344), Expect = 0.0 Identities = 405/428 (94%), Gaps = 1/428 (0%) Strand = Plus / Minus Query: 107 tacatcgtctgtgtgttctcgatgaccttctcgttgtcgtaaatctccttggcgtaccac 166 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct: 807 tacatcgtctgtgtgttctcgatgaccttctcgttgtcgtagatctccttggcgtagcac 748 Query: 167 aggttggggtagtcgtaggcagctccataacggttcttgcacccggnggttgcnnnnnnn 226 || |||||||| ||||||||||||||||| ||||||||||| |||| |||||| Sbjct: 747 agattggggtaatcgtaggcagctccatatcggttcttgcagccggtggttgccttctct 688 Query: 227 nnnggagtgtaaacaggctgacccacaatgttcgatgtggcgaagttgcaggtgagtacg 286 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 687 cccggagtgtagacaggctgacccacaatgttcgatgtggcgaagttgcaggtgagtacg 628 Query: 287 aagtggttgtaaaagtcccgggagaagcgcaccgcggcacatcccacatgggtgttcttc 346 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 627 aagtggttgtaaaagtcccgggagaagcgcaccgcggcacatcccacatgtgtgttcttc 568 Query: 347 tcggccaccgcgatggtgaacttggtcaccgctttgttgggaagctcctccgggaagctg 406 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 567 tcggccaccgcgatggtgaacttggtcaccgctttgttgggaagctcctccgggaagctg 508 Query: 407 gcgaggatctcgggagatgcattcgagcgctcagcaaaccagttctcgatctgctccttt 466 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 507 gcgaggatctcgggagatgcattcgagcgctcagcaaaccagttctcgatctcctccttt 448 Query: 467 attatttccgcatcggtgtac-ccgtctcggctccgctgtactggancacggcgttgttc 525 ||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||| Sbjct: 447 attatttccgcatcggtgtactccgtctcggctccgctgtactggaacaaggcgttgttc 388 Query: 526 tggccggc 533 |||||||| Sbjct: 387 tggccggc 380 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,441 Number of Sequences: 18737 Number of extensions: 12441 Number of successful extensions: 300 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 289 Number of HSP's gapped (non-prelim): 6 length of query: 571 length of database: 41,270,998 effective HSP length: 17 effective length of query: 554 effective length of database: 40,952,469 effective search space: 22687667826 effective search space used: 22687667826 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA141383|DMAA41383 CK01660.3prime CK Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone CK01660 3prime, mRNA sequence. (484 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value 312-RA feature: mRNA loc=3L:join(1331768..1332100,1332158..13324... 799 0.0 >312-RA feature: mRNA loc=3L:join(1331768..1332100,1332158..1332418, 1332482..1333482);ID=FBan0009166;gene_id=FBgn0029514;gen e_sym=312;sym=CG9166;scaffold=AE003471;len=1595 Length = 1595 Score = 799 bits (403), Expect = 0.0 Identities = 438/452 (96%), Gaps = 1/452 (0%) Strand = Plus / Minus Query: 33 attaatagtgaaatgtattattttacgtctttagtttcgatttgtctacnaaagaaaggg 92 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 795 attaatagtgaaatgtattattttacgtctttagtttcgatttgtctacgaaagaaaggg 736 Query: 93 gtgtttgagccatgaaaatatcgccatagggattggtgggtttttggctttcgcggtcna 152 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 735 gtgtttgagccatgaaaatatcgccatagggattggtgggtttttggctttcgcggtcga 676 Query: 153 attcgganccaatggcccacagcgactccanatcgtattcctcncgagcactcggtgaaa 212 ||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct: 675 attcggagccaatggcccacagcgactccagatcgtattcctcgcgagcactcggtgaaa 616 Query: 213 atatgtgcagggcaatgttgcccaantccatggccatccaatcccggctcttatcgccct 272 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 615 atatgtgcagggcaatgttgcccaagtccatggccatccaatcccggctcttatcgccct 556 Query: 273 cgatgcgcggcaatatgtcacccttgccccncttgatcttgaacattcggcgcacnaact 332 |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct: 555 cgatgcgcggcaatatgtcacccttgccccgcttgatcttgaacattcggcgcacgaact 496 Query: 333 ccgccgtgganagcatgtgtcggtaactgcgaccactgcaaaccaccaggtggtcaacgt 392 |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 495 ccgcggtggacagcatgtgtcggtaactgcgaccactgcaaaccaccaggtggtcaacgt 436 Query: 393 acttcaggttctccggcacgtancanacaaaatatgtcgtccacattctccttgcggagc 452 |||||||||||||||||||||| || || |||||||||||||||||||||||||||||| Sbjct: 435 acttcaggttctccggcacgtagcagac-gaatatgtcgtccacattctccttgcggagc 377 Query: 453 agctccaccaagtcctcaacgtcgaacactcc 484 |||||||||||||||||||||||||||||||| Sbjct: 376 agctccaccaagtcctcaacgtcgaacactcc 345 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8966 Number of Sequences: 18737 Number of extensions: 8966 Number of successful extensions: 219 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 216 Number of HSP's gapped (non-prelim): 2 length of query: 484 length of database: 41,270,998 effective HSP length: 17 effective length of query: 467 effective length of database: 40,952,469 effective search space: 19124803023 effective search space used: 19124803023 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA141392|DMAA41392 CK01670.contig CK Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone CK01670 contig, mRNA sequence. (704 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG3777-RC feature: mRNA loc=X:join(100483..100583,101130..101271... 989 0.0 CG3777-RB feature: mRNA loc=X:join(37141..37195,101130..101271,1... 989 0.0 CG3777-RA feature: mRNA loc=X:join(100483..100557,101130..101271... 989 0.0 >CG3777-RC feature: mRNA loc=X:join(100483..100583,101130..101271,103587..105145, 105518..105676,106085..106762, 106882..107642);ID=FBan0003777;gene_id=FBgn0024989;gene_s ym=CG3777;sym=CG3777;scaffold=AE003417;len=3400 Length = 3400 Score = 989 bits (499), Expect = 0.0 Identities = 504/506 (99%) Strand = Plus / Plus Query: 1 aagcaggtgattccgctgccgtcgttccagcggctcctgtatccgggttaaatcgtctta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2436 aagcaggtgattccgctgccgtcgttccagcggctcctgtatccgggttaaatcgtctta 2495 Query: 61 gaactcgaccacgtctcaacgccctaacgcataagactgatgcggttaagcctaaggcat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2496 gaactcgaccacgtctcaacgccctaacgcataagactgatgcggttaagcctaaggcat 2555 Query: 121 ccgcagcccccgcccccgcgccaaggaagattaatcctctgttggcaaagcgacgactcc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2556 ccgcagcccccgcccccgcgccaaggaagattaatcctctgttggcaaagcgacgactcc 2615 Query: 181 aactgggagccacttccaccacngagtcccccgctgaggaggagcatttagcgctggact 240 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 2616 aactgggagccacttccaccacagagtcccccgctgaggaggagcatttagcgctggact 2675 Query: 241 cctccgcggagcagtccgacaaagaggagtcgtttgccggaggaagcaacgagacgggcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2676 cctccgcggagcagtccgacaaagaggagtcgtttgccggaggaagcaacgagacgggcg 2735 Query: 301 gagaaggccccggaaagccggagcatgaaactacggaagcgacggaggcaacaactaagc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2736 gagaaggccccggaaagccggagcatgaaactacggaagcgacggaggcaacaactaagc 2795 Query: 361 aggagccccgcggtcttggacttttaggacagcgtcgtcgtctgccgctccgcaaacccg 420 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2796 agcagccccgcggtcttggacttttaggacagcgtcgtcgtctgccgctccgcaaacccg 2855 Query: 421 gaacgatcctgtaaaacaacaaattgccatctacccgtttgaatcctgtaataataactt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2856 gaacgatcctgtaaaacaacaaattgccatctacccgtttgaatcctgtaataataactt 2915 Query: 481 gcccagatttgctgcagcatactcct 506 |||||||||||||||||||||||||| Sbjct: 2916 gcccagatttgctgcagcatactcct 2941 >CG3777-RB feature: mRNA loc=X:join(37141..37195,101130..101271,103587..105145, 105518..105676,106085..106762, 106882..107642);ID=FBan0003777;gene_id=FBgn0024989;gene_s ym=CG3777;sym=CG3777;scaffold=AE003417;len=3354 Length = 3354 Score = 989 bits (499), Expect = 0.0 Identities = 504/506 (99%) Strand = Plus / Plus Query: 1 aagcaggtgattccgctgccgtcgttccagcggctcctgtatccgggttaaatcgtctta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2390 aagcaggtgattccgctgccgtcgttccagcggctcctgtatccgggttaaatcgtctta 2449 Query: 61 gaactcgaccacgtctcaacgccctaacgcataagactgatgcggttaagcctaaggcat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2450 gaactcgaccacgtctcaacgccctaacgcataagactgatgcggttaagcctaaggcat 2509 Query: 121 ccgcagcccccgcccccgcgccaaggaagattaatcctctgttggcaaagcgacgactcc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2510 ccgcagcccccgcccccgcgccaaggaagattaatcctctgttggcaaagcgacgactcc 2569 Query: 181 aactgggagccacttccaccacngagtcccccgctgaggaggagcatttagcgctggact 240 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 2570 aactgggagccacttccaccacagagtcccccgctgaggaggagcatttagcgctggact 2629 Query: 241 cctccgcggagcagtccgacaaagaggagtcgtttgccggaggaagcaacgagacgggcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2630 cctccgcggagcagtccgacaaagaggagtcgtttgccggaggaagcaacgagacgggcg 2689 Query: 301 gagaaggccccggaaagccggagcatgaaactacggaagcgacggaggcaacaactaagc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2690 gagaaggccccggaaagccggagcatgaaactacggaagcgacggaggcaacaactaagc 2749 Query: 361 aggagccccgcggtcttggacttttaggacagcgtcgtcgtctgccgctccgcaaacccg 420 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2750 agcagccccgcggtcttggacttttaggacagcgtcgtcgtctgccgctccgcaaacccg 2809 Query: 421 gaacgatcctgtaaaacaacaaattgccatctacccgtttgaatcctgtaataataactt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2810 gaacgatcctgtaaaacaacaaattgccatctacccgtttgaatcctgtaataataactt 2869 Query: 481 gcccagatttgctgcagcatactcct 506 |||||||||||||||||||||||||| Sbjct: 2870 gcccagatttgctgcagcatactcct 2895 >CG3777-RA feature: mRNA loc=X:join(100483..100557,101130..101271,103587..105145, 105518..105676,106085..106762, 106882..107642);ID=FBan0003777;gene_id=FBgn0024989;gene_s ym=CG3777;sym=CG3777;scaffold=AE003417;len=3374 Length = 3374 Score = 989 bits (499), Expect = 0.0 Identities = 504/506 (99%) Strand = Plus / Plus Query: 1 aagcaggtgattccgctgccgtcgttccagcggctcctgtatccgggttaaatcgtctta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2410 aagcaggtgattccgctgccgtcgttccagcggctcctgtatccgggttaaatcgtctta 2469 Query: 61 gaactcgaccacgtctcaacgccctaacgcataagactgatgcggttaagcctaaggcat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2470 gaactcgaccacgtctcaacgccctaacgcataagactgatgcggttaagcctaaggcat 2529 Query: 121 ccgcagcccccgcccccgcgccaaggaagattaatcctctgttggcaaagcgacgactcc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2530 ccgcagcccccgcccccgcgccaaggaagattaatcctctgttggcaaagcgacgactcc 2589 Query: 181 aactgggagccacttccaccacngagtcccccgctgaggaggagcatttagcgctggact 240 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 2590 aactgggagccacttccaccacagagtcccccgctgaggaggagcatttagcgctggact 2649 Query: 241 cctccgcggagcagtccgacaaagaggagtcgtttgccggaggaagcaacgagacgggcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2650 cctccgcggagcagtccgacaaagaggagtcgtttgccggaggaagcaacgagacgggcg 2709 Query: 301 gagaaggccccggaaagccggagcatgaaactacggaagcgacggaggcaacaactaagc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2710 gagaaggccccggaaagccggagcatgaaactacggaagcgacggaggcaacaactaagc 2769 Query: 361 aggagccccgcggtcttggacttttaggacagcgtcgtcgtctgccgctccgcaaacccg 420 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2770 agcagccccgcggtcttggacttttaggacagcgtcgtcgtctgccgctccgcaaacccg 2829 Query: 421 gaacgatcctgtaaaacaacaaattgccatctacccgtttgaatcctgtaataataactt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2830 gaacgatcctgtaaaacaacaaattgccatctacccgtttgaatcctgtaataataactt 2889 Query: 481 gcccagatttgctgcagcatactcct 506 |||||||||||||||||||||||||| Sbjct: 2890 gcccagatttgctgcagcatactcct 2915 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,502 Number of Sequences: 18737 Number of extensions: 14502 Number of successful extensions: 317 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 314 Number of HSP's gapped (non-prelim): 3 length of query: 704 length of database: 41,270,998 effective HSP length: 17 effective length of query: 687 effective length of database: 40,952,469 effective search space: 28134346203 effective search space used: 28134346203 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA141420|DMAA41420 CK01713.5prime CK Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone CK01713 5prime, mRNA sequence. (676 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 19,834 Number of Sequences: 18737 Number of extensions: 19834 Number of successful extensions: 664 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 664 Number of HSP's gapped (non-prelim): 0 length of query: 676 length of database: 41,270,998 effective HSP length: 17 effective length of query: 659 effective length of database: 40,952,469 effective search space: 26987677071 effective search space used: 26987677071 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA141476|DMAA41476 CK01830.5prime CK Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone CK01830 5prime, mRNA sequence. (628 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG14216-RA feature: mRNA loc=X:join(19395527..19395832,19395895.... 1160 0.0 >CG14216-RA feature: mRNA loc=X:join(19395527..19395832,19395895..19396153, 19396212..19397835);ID=FBan0014216;gene_id=FBgn0031054;ge ne_sym=CG14216;sym=CG14216;scaffold=AE003512;len=2189 Length = 2189 Score = 1160 bits (585), Expect = 0.0 Identities = 608/619 (98%) Strand = Plus / Plus Query: 10 cggtatcttgttgacggcctgtgtcacatttaccctgcgacctcaaacctgcctaggtct 69 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1531 cggtttcttgttgacggcctgtgtcacatttaccctgcgacctcaaacctgcctaggtct 1590 Query: 70 tctcttcgacggaaataccattgattacgtctcatcccactgctacctcggagttcacct 129 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1591 tctcttcgacggaaataccattgattacgtctcatcccactgctacctcggagttcacct 1650 Query: 130 tgatcggacgctgagttggaaagcccttatcacggctcctggaaactgaaaaagctggac 189 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1651 tgatcggacgctgagttggaaagcccttatcacggctcctggaaactgaaaaagctggac 1710 Query: 190 tgggttttccactcaagcaaactccatatggcaactaaggctctcttaataaaagccata 249 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1711 tgggttttccactcaagcaaactccatatggcaactaaggctctcttaataaaagccata 1770 Query: 250 tccaagtgtggggaacagagtattanagtaagacaatcgggagcggcacgacatgcatct 309 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 1771 tccaagtgtggggaacagagtattagagtaagacaatcgggagcggcacgacatgcatct 1830 Query: 310 gggctacatgtggtatgtgagcaatanagttattgaaggggacttaaaaggtgtcccatt 369 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1831 gggctacatgtggtatgtgagcaatagagttattgaaggggacttaaaaggtgtcccatt 1890 Query: 370 ggggtaccaaataaacttccatagcagccgatatgccgacagacttagcgcccacttaaa 429 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1891 ggggtaccaaataaacttccatagcagccgatatgccgacagacttagcgcccacttaaa 1950 Query: 430 cacnttagcgaatgatcttgtcgaccctatttccctccgatgtctgaaganaatacatcc 489 ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1951 cacgttagcgaatgatcttgtcgaccctatttccctccgatgtctgaagagaatacatcc 2010 Query: 490 ccatgaactccttacacgtnatatagcataatctctcctcggtacatttgtatacactat 549 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 2011 ccatgaactccttacacgtaatatagcataatctctcctcggtacatttgtatacactat 2070 Query: 550 aattaangaacagaatccntaatatcttttaagctacacattangttaacttcagaanga 609 |||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||| || Sbjct: 2071 aattaaggaacagaatccataatatcttttaagctacacattaggttaacttcagaagga 2130 Query: 610 actgatcnattcctactga 628 ||||||| ||||||||||| Sbjct: 2131 actgatcgattcctactga 2149 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7489 Number of Sequences: 18737 Number of extensions: 7489 Number of successful extensions: 129 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 128 Number of HSP's gapped (non-prelim): 1 length of query: 628 length of database: 41,270,998 effective HSP length: 17 effective length of query: 611 effective length of database: 40,952,469 effective search space: 25021958559 effective search space used: 25021958559 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA141477|DMAA41477 CK01830.3prime CK Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone CK01830 3prime, mRNA sequence. (450 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG14216-RA feature: mRNA loc=X:join(19395527..19395832,19395895.... 863 0.0 >CG14216-RA feature: mRNA loc=X:join(19395527..19395832,19395895..19396153, 19396212..19397835);ID=FBan0014216;gene_id=FBgn0031054;ge ne_sym=CG14216;sym=CG14216;scaffold=AE003512;len=2189 Length = 2189 Score = 863 bits (432), Expect = 0.0 Identities = 444/450 (98%), Gaps = 1/450 (0%) Strand = Plus / Minus Query: 1 ctttttagagtttaaatcatttattattattcattagtcagtaggaatcgatcagttcct 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2186 ctttttagagtttaaatcatttattattattcattagtcagtaggaatcgatcagttcct 2127 Query: 61 tctgaagttaacctaatgtgtagcttaaaagatattatggattctgttccttaattatag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2126 tctgaagttaacctaatgtgtagcttaaaagatattatggattctgttccttaattatag 2067 Query: 121 tgtatacaaatgtaccgaggagagattatgctatattacgtgtaaggagttcatggggat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2066 tgtatacaaatgtaccgaggagagattatgctatattacgtgtaaggagttcatggggat 2007 Query: 181 gtattctcttcagacatcggagggaaatagggtcgacaagatcattcgctaacgtgttta 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2006 gtattctcttcagacatcggagggaaatagggtcgacaagatcattcgctaacgtgttta 1947 Query: 241 agtgggcgctaagtctgtcggcatatcggctgctatggaagtttatttggtaccccaatg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1946 agtgggcgctaagtctgtcggcatatcggctgctatggaagtttatttggtaccccaatg 1887 Query: 301 ggacaccttttaagtcccctbymathaccyctattgctcacataccacatgtagcccaga 360 |||||||||||||||||||| || | | |||||||||||||||||||||||||||||| Sbjct: 1886 ggacaccttttaagtccccttcaataa-ctctattgctcacataccacatgtagcccaga 1828 Query: 361 tgcatgtcgtgccgctcccgattgtcttactctaatactctgttccccacacttggatat 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1827 tgcatgtcgtgccgctcccgattgtcttactctaatactctgttccccacacttggatat 1768 Query: 421 ggcttttattaagagagccttagttgccat 450 |||||||||||||||||||||||||||||| Sbjct: 1767 ggcttttattaagagagccttagttgccat 1738 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.38 0.712 1.31 Gapped Lambda K H 1.38 0.712 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6903 Number of Sequences: 18737 Number of extensions: 6903 Number of successful extensions: 513 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 511 Number of HSP's gapped (non-prelim): 1 length of query: 450 length of database: 41,270,998 effective HSP length: 17 effective length of query: 433 effective length of database: 40,952,469 effective search space: 17732419077 effective search space used: 17732419077 T: 0 A: 0 X1: 6 (12.0 bits) X2: 15 (29.9 bits) S1: 12 (24.5 bits) S2: 184 (367.9 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA141595|DMAA41595 CK02262.5prime Drosophila Embryonic Polysomal in pBS skT Drosophila melanogaster cDNA clone CK02262 5', mRNA sequence. (527 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9851 Number of Sequences: 18737 Number of extensions: 9851 Number of successful extensions: 157 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 157 Number of HSP's gapped (non-prelim): 0 length of query: 527 length of database: 41,270,998 effective HSP length: 17 effective length of query: 510 effective length of database: 40,952,469 effective search space: 20885759190 effective search space used: 20885759190 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA141596|DMAA41596 CK02262.3prime Drosophila Embryonic Polysomal in pBS skT Drosophila melanogaster cDNA clone CK02262 3', mRNA sequence. (530 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9162 Number of Sequences: 18737 Number of extensions: 9162 Number of successful extensions: 251 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 251 Number of HSP's gapped (non-prelim): 0 length of query: 530 length of database: 41,270,998 effective HSP length: 17 effective length of query: 513 effective length of database: 40,952,469 effective search space: 21008616597 effective search space used: 21008616597 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA141788|DMAA41788 CK02472.3prime CK Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone CK02472 3prime, mRNA sequence. (433 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG14709-RA feature: mRNA loc=3R:join(7394990..7395574,7396767..7... 664 0.0 >CG14709-RA feature: mRNA loc=3R:join(7394990..7395574,7396767..7396852, 7396942..7397062,7397126..7397301,7397355..7397545, 7398008..7399602,7399670..7401311, 7401375..7401993);ID=FBan0014709;gene_id=FBgn0025701;gene _sym=CG14709;sym=CG14709;scaffold=AE003692;len=5015 Length = 5015 Score = 664 bits (335), Expect = 0.0 Identities = 376/388 (96%), Gaps = 3/388 (0%) Strand = Plus / Minus Query: 1 tataatgtaaaacaaatttatggtctatatatttanaactttataaaactttcacttcta 60 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 4721 tataatgtaaaacaaatttatggtctatatatttagaactttataaaactttcacttcta 4662 Query: 61 catttttganactgtatatttaaccgttcgttgggttgtttcattacattatagtatatc 120 ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 4661 catttttgagactgtatatttaaccgttcgttgggttgattcattacattatagtatatc 4602 Query: 121 tataaggattgagttatacaagtatgtacggttcgaaggcataatactttaagtanaaaa 180 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 4601 tataaggattgagttatacaagtatgtacggttcgaaggcataatactttaagtagaaaa 4542 Query: 181 ctagcttaaatgcagctgactggattaggtacaactttgaanacgcttacagccaggaaa 240 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 4541 ctagcttaaatgcagctgactggattaggtacaactttgaagacgcttacagccaggaaa 4482 Query: 241 tganaccttgttggctcccagtttagtaaccaataaccanatgcttaatctactccgatt 300 ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 4481 tgagaccttgttggctcccagtttagtaaccaataaccagatgcttaatctactccgatt 4422 Query: 301 tcggtttcattgattccaaatgagccttttcggcaactttaaaaaggctgttcnaatgtt 360 |||||||||||||||||||||||||||||||||||||||||| ||||||| || |||| | Sbjct: 4421 tcggtttcattgattccaaatgagccttttcggcaactttaagaaggctg-tcgaatg-t 4364 Query: 361 gttttgttccagtttccattaccattcc 388 |||||| ||||||||||||||||||||| Sbjct: 4363 gttttg-tccagtttccattaccattcc 4337 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7050 Number of Sequences: 18737 Number of extensions: 7050 Number of successful extensions: 471 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 469 Number of HSP's gapped (non-prelim): 1 length of query: 433 length of database: 41,270,998 effective HSP length: 17 effective length of query: 416 effective length of database: 40,952,469 effective search space: 17036227104 effective search space used: 17036227104 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA141972|DMAA41972 CK00068.3prime CK Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone CK00068 3prime, mRNA sequence. (566 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG9485-RC feature: mRNA loc=2R:join(16357449..16357530,16357975.... 1051 0.0 CG9485-RB feature: mRNA loc=2R:join(16356972..16357267,16357975.... 1051 0.0 CG9485-RA feature: mRNA loc=2R:join(16356231..16356334,16357975.... 1051 0.0 >CG9485-RC feature: mRNA loc=2R:join(16357449..16357530,16357975..16358315, 16358379..16358736,16358787..16360190,16360248..16361103, 16361160..16361337,16361398..16361567, 16361632..16363120);ID=FBan0009485;gene_id=FBgn0034618;ge ne_sym=CG9485;sym=CG9485;scaffold=AE003453;len=4878 Length = 4878 Score = 1051 bits (530), Expect = 0.0 Identities = 556/564 (98%), Gaps = 1/564 (0%) Strand = Plus / Plus Query: 1 gctatcgtctccaagttggatctggtggcacttagtggtgcccttttcagctgcgatgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2813 gctatcgtctccaagttggatctggtggcacttagtggtgcccttttcagctgcgatgat 2872 Query: 61 gaggagagggatcttggcaaaggtggcaccgcctacgacattcccaactttggaaagatc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2873 gaggagagggatcttggcaaaggtggcaccgcctacgacattcccaactttggaaagatc 2932 Query: 121 gtttactgcggactgcaaggattcatttccctgttgacggagatttcgcctaaaaatgac 180 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2933 gtttactgcggattgcaaggattcatttccctgttgacggagatttcgcctaaaaatgac 2992 Query: 181 ttgggacatccgctttgtaacaatctgcgcgacggaaactggatgatagattacatttct 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 2993 ttgggacatccgctttgtaacaatctgcgcgacggaaactggatgatggattacatttct 3052 Query: 241 gatcgcctaactagttacgaanacctgaaaccactctccgcctggttcaaagctaccttt 300 ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct: 3053 gatcgcctaactagttatgaagacctgaaaccactctccgcctggttcaaagctaccttt 3112 Query: 301 gagccactgaanaatattccacgctacctcataccctgctactttgatgccattgtcagc 360 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3113 gagccactgaagaatattccacgctacctcataccctgctactttgatgccattgtcagc 3172 Query: 361 ggggtttacaatgtgctcatcaaccaggtcaacgaactaatgccagacttcattaagaat 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3173 ggggtttacaatgtgctcatcaaccaggtcaacgaactaatgccagacttcattaagaat 3232 Query: 421 ggccacagtttcccacaatccctggccctgtccacgttgcagttcctctccgtttgcaag 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3233 ggccacagtttcccacaatccctggccctgtccacgttgcagttcctctccgtttgcaag 3292 Query: 481 tccgccaatctgccgggattcagtcctgctctaagtccacccaagcctccaaagcaatgt 540 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3293 tcggccaatctgccgggattcagtcctgctctaagtccacccaagcctccaaagcaatg- 3351 Query: 541 tttgactctatctgctggtctgcc 564 | |||||||||||||||||||||| Sbjct: 3352 tgtgactctatctgctggtctgcc 3375 >CG9485-RB feature: mRNA loc=2R:join(16356972..16357267,16357975..16358315, 16358379..16358736,16358787..16360190,16360248..16361103, 16361160..16361337,16361398..16361567, 16361632..16363120);ID=FBan0009485;gene_id=FBgn0034618;ge ne_sym=CG9485;sym=CG9485;scaffold=AE003453;len=5092 Length = 5092 Score = 1051 bits (530), Expect = 0.0 Identities = 556/564 (98%), Gaps = 1/564 (0%) Strand = Plus / Plus Query: 1 gctatcgtctccaagttggatctggtggcacttagtggtgcccttttcagctgcgatgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3027 gctatcgtctccaagttggatctggtggcacttagtggtgcccttttcagctgcgatgat 3086 Query: 61 gaggagagggatcttggcaaaggtggcaccgcctacgacattcccaactttggaaagatc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3087 gaggagagggatcttggcaaaggtggcaccgcctacgacattcccaactttggaaagatc 3146 Query: 121 gtttactgcggactgcaaggattcatttccctgttgacggagatttcgcctaaaaatgac 180 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3147 gtttactgcggattgcaaggattcatttccctgttgacggagatttcgcctaaaaatgac 3206 Query: 181 ttgggacatccgctttgtaacaatctgcgcgacggaaactggatgatagattacatttct 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 3207 ttgggacatccgctttgtaacaatctgcgcgacggaaactggatgatggattacatttct 3266 Query: 241 gatcgcctaactagttacgaanacctgaaaccactctccgcctggttcaaagctaccttt 300 ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct: 3267 gatcgcctaactagttatgaagacctgaaaccactctccgcctggttcaaagctaccttt 3326 Query: 301 gagccactgaanaatattccacgctacctcataccctgctactttgatgccattgtcagc 360 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3327 gagccactgaagaatattccacgctacctcataccctgctactttgatgccattgtcagc 3386 Query: 361 ggggtttacaatgtgctcatcaaccaggtcaacgaactaatgccagacttcattaagaat 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3387 ggggtttacaatgtgctcatcaaccaggtcaacgaactaatgccagacttcattaagaat 3446 Query: 421 ggccacagtttcccacaatccctggccctgtccacgttgcagttcctctccgtttgcaag 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3447 ggccacagtttcccacaatccctggccctgtccacgttgcagttcctctccgtttgcaag 3506 Query: 481 tccgccaatctgccgggattcagtcctgctctaagtccacccaagcctccaaagcaatgt 540 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3507 tcggccaatctgccgggattcagtcctgctctaagtccacccaagcctccaaagcaatg- 3565 Query: 541 tttgactctatctgctggtctgcc 564 | |||||||||||||||||||||| Sbjct: 3566 tgtgactctatctgctggtctgcc 3589 >CG9485-RA feature: mRNA loc=2R:join(16356231..16356334,16357975..16358315, 16358379..16358736,16358787..16360190,16360248..16361103, 16361160..16361337,16361398..16361567, 16361632..16363120);ID=FBan0009485;gene_id=FBgn0034618;ge ne_sym=CG9485;sym=CG9485;scaffold=AE003453;len=4900 Length = 4900 Score = 1051 bits (530), Expect = 0.0 Identities = 556/564 (98%), Gaps = 1/564 (0%) Strand = Plus / Plus Query: 1 gctatcgtctccaagttggatctggtggcacttagtggtgcccttttcagctgcgatgat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2835 gctatcgtctccaagttggatctggtggcacttagtggtgcccttttcagctgcgatgat 2894 Query: 61 gaggagagggatcttggcaaaggtggcaccgcctacgacattcccaactttggaaagatc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2895 gaggagagggatcttggcaaaggtggcaccgcctacgacattcccaactttggaaagatc 2954 Query: 121 gtttactgcggactgcaaggattcatttccctgttgacggagatttcgcctaaaaatgac 180 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2955 gtttactgcggattgcaaggattcatttccctgttgacggagatttcgcctaaaaatgac 3014 Query: 181 ttgggacatccgctttgtaacaatctgcgcgacggaaactggatgatagattacatttct 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 3015 ttgggacatccgctttgtaacaatctgcgcgacggaaactggatgatggattacatttct 3074 Query: 241 gatcgcctaactagttacgaanacctgaaaccactctccgcctggttcaaagctaccttt 300 ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct: 3075 gatcgcctaactagttatgaagacctgaaaccactctccgcctggttcaaagctaccttt 3134 Query: 301 gagccactgaanaatattccacgctacctcataccctgctactttgatgccattgtcagc 360 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3135 gagccactgaagaatattccacgctacctcataccctgctactttgatgccattgtcagc 3194 Query: 361 ggggtttacaatgtgctcatcaaccaggtcaacgaactaatgccagacttcattaagaat 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3195 ggggtttacaatgtgctcatcaaccaggtcaacgaactaatgccagacttcattaagaat 3254 Query: 421 ggccacagtttcccacaatccctggccctgtccacgttgcagttcctctccgtttgcaag 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3255 ggccacagtttcccacaatccctggccctgtccacgttgcagttcctctccgtttgcaag 3314 Query: 481 tccgccaatctgccgggattcagtcctgctctaagtccacccaagcctccaaagcaatgt 540 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3315 tcggccaatctgccgggattcagtcctgctctaagtccacccaagcctccaaagcaatg- 3373 Query: 541 tttgactctatctgctggtctgcc 564 | |||||||||||||||||||||| Sbjct: 3374 tgtgactctatctgctggtctgcc 3397 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,562 Number of Sequences: 18737 Number of extensions: 11562 Number of successful extensions: 228 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 222 Number of HSP's gapped (non-prelim): 3 length of query: 566 length of database: 41,270,998 effective HSP length: 17 effective length of query: 549 effective length of database: 40,952,469 effective search space: 22482905481 effective search space used: 22482905481 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA142062|DMAA42062 CK00198.5prime CK Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone CK00198 5prime, mRNA sequence. (726 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Tequila-RD feature: mRNA loc=3L:join(9033368..9033539,9033774..9... 809 0.0 Tequila-RB feature: mRNA loc=3L:join(9045910..9045977,9046034..9... 809 0.0 Tequila-RA feature: mRNA loc=3L:join(9033392..9033539,9033774..9... 809 0.0 >Tequila-RD feature: mRNA loc=3L:join(9033368..9033539,9033774..9034332, 9046559..9048658,9048729..9049120,9049178..9049333, 9049395..9050175,9050243..9050335,9050447..9050530, 9050592..9050835);ID=FBan0004821;gene_id=FBgn0023479;gene _sym=Tequila;sym=CG4821;scaffold=AE003553;len=4581 Length = 4581 Score = 809 bits (408), Expect = 0.0 Identities = 454/469 (96%), Gaps = 1/469 (0%) Strand = Plus / Plus Query: 1 gtgcagccgtctgtcaggctcccgttcaataccgtttagagggtggtcgcaattccaatg 60 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 3207 gtgcagccgtctgtcaggctcccgttcaataccgtttagagggtggtcggaattccaatg 3266 Query: 61 aaggacgcctggaggtgaaacaccatggcgtatggggcagtgtttgtgatgatgacttta 120 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3267 aaggacgcctggaggtaaaacaccatggcgtatggggcagtgtttgtgatgatgacttta 3326 Query: 121 atctcaagtcggcccaagttgcctgcaactcaatgggcttctttggaccagcgaaaatcg 180 |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 3327 atctcaagtctgcccaagttgcctgcaactcaatgggcttttttggaccagcgaaaatcg 3386 Query: 181 agaanaacatatttggcaacagcaatggacccatttggctcgatcaggtaatgtgctttg 240 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3387 aaaagaacatatttggcaacagcaatggacccatttggctcgatcaggtaatgtgctttg 3446 Query: 241 gaaacgagacaagcattgaccaatgtaaccactggaactggggcgagcacaactgcaatc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3447 gaaacgagacaagcattgaccaatgtaaccactggaactggggcgagcacaactgcaatc 3506 Query: 301 atactgaagatgttgcgctgcactgcagcgctgggccaccacctcgcagtcagaggtatt 360 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3507 acactgaagatgttgcgctgcactgcagcgctgggccaccacctcgcagtcagaggtatt 3566 Query: 361 cccagactcagattaaaggtggtagatctctgggccgaaaaaccacaccgaagacctatt 420 |||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||| Sbjct: 3567 cccagactcagattaaaggtggtagatccctgggacgggaaaccacaccgaagacctatt 3626 Query: 421 cacaaattgggctgtgggaacngtcnaaccaaggcagtacatactcctc 469 ||||||||||||||||||||| ||| | |||||||||||||||||||| Sbjct: 3627 cacaaattgggctgtgggaacggtcg-agcaaggcagtacatactcctc 3674 >Tequila-RB feature: mRNA loc=3L:join(9045910..9045977,9046034..9046498, 9046559..9048658,9048729..9049120,9049178..9049333, 9049395..9050175,9050243..9050335,9050447..9050530, 9050592..9050831);ID=FBan0004821;gene_id=FBgn0023479;gene _sym=Tequila;sym=CG4821;scaffold=AE003553;len=4379 Length = 4379 Score = 809 bits (408), Expect = 0.0 Identities = 454/469 (96%), Gaps = 1/469 (0%) Strand = Plus / Plus Query: 1 gtgcagccgtctgtcaggctcccgttcaataccgtttagagggtggtcgcaattccaatg 60 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 3009 gtgcagccgtctgtcaggctcccgttcaataccgtttagagggtggtcggaattccaatg 3068 Query: 61 aaggacgcctggaggtgaaacaccatggcgtatggggcagtgtttgtgatgatgacttta 120 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3069 aaggacgcctggaggtaaaacaccatggcgtatggggcagtgtttgtgatgatgacttta 3128 Query: 121 atctcaagtcggcccaagttgcctgcaactcaatgggcttctttggaccagcgaaaatcg 180 |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 3129 atctcaagtctgcccaagttgcctgcaactcaatgggcttttttggaccagcgaaaatcg 3188 Query: 181 agaanaacatatttggcaacagcaatggacccatttggctcgatcaggtaatgtgctttg 240 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3189 aaaagaacatatttggcaacagcaatggacccatttggctcgatcaggtaatgtgctttg 3248 Query: 241 gaaacgagacaagcattgaccaatgtaaccactggaactggggcgagcacaactgcaatc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3249 gaaacgagacaagcattgaccaatgtaaccactggaactggggcgagcacaactgcaatc 3308 Query: 301 atactgaagatgttgcgctgcactgcagcgctgggccaccacctcgcagtcagaggtatt 360 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3309 acactgaagatgttgcgctgcactgcagcgctgggccaccacctcgcagtcagaggtatt 3368 Query: 361 cccagactcagattaaaggtggtagatctctgggccgaaaaaccacaccgaagacctatt 420 |||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||| Sbjct: 3369 cccagactcagattaaaggtggtagatccctgggacgggaaaccacaccgaagacctatt 3428 Query: 421 cacaaattgggctgtgggaacngtcnaaccaaggcagtacatactcctc 469 ||||||||||||||||||||| ||| | |||||||||||||||||||| Sbjct: 3429 cacaaattgggctgtgggaacggtcg-agcaaggcagtacatactcctc 3476 >Tequila-RA feature: mRNA loc=3L:join(9033392..9033539,9033774..9034332, 9034382..9034576,9034730..9034975,9035029..9035505, 9035568..9035670,9043196..9043629,9043768..9044010, 9044075..9044539,9044598..9045977,9046034..9046498, 9046559..9048658,9048729..9049120,9049178..9049333, 9049395..9050175,9050243..9050335,9050447..9050530, 9050592..9050835);ID=FBan0004821;gene_id=FBgn0023479;gene _sym=Tequila;sym=CG4821;scaffold=AE003553;len=8565 Length = 8565 Score = 809 bits (408), Expect = 0.0 Identities = 454/469 (96%), Gaps = 1/469 (0%) Strand = Plus / Plus Query: 1 gtgcagccgtctgtcaggctcccgttcaataccgtttagagggtggtcgcaattccaatg 60 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 7191 gtgcagccgtctgtcaggctcccgttcaataccgtttagagggtggtcggaattccaatg 7250 Query: 61 aaggacgcctggaggtgaaacaccatggcgtatggggcagtgtttgtgatgatgacttta 120 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7251 aaggacgcctggaggtaaaacaccatggcgtatggggcagtgtttgtgatgatgacttta 7310 Query: 121 atctcaagtcggcccaagttgcctgcaactcaatgggcttctttggaccagcgaaaatcg 180 |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 7311 atctcaagtctgcccaagttgcctgcaactcaatgggcttttttggaccagcgaaaatcg 7370 Query: 181 agaanaacatatttggcaacagcaatggacccatttggctcgatcaggtaatgtgctttg 240 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7371 aaaagaacatatttggcaacagcaatggacccatttggctcgatcaggtaatgtgctttg 7430 Query: 241 gaaacgagacaagcattgaccaatgtaaccactggaactggggcgagcacaactgcaatc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7431 gaaacgagacaagcattgaccaatgtaaccactggaactggggcgagcacaactgcaatc 7490 Query: 301 atactgaagatgttgcgctgcactgcagcgctgggccaccacctcgcagtcagaggtatt 360 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7491 acactgaagatgttgcgctgcactgcagcgctgggccaccacctcgcagtcagaggtatt 7550 Query: 361 cccagactcagattaaaggtggtagatctctgggccgaaaaaccacaccgaagacctatt 420 |||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||| Sbjct: 7551 cccagactcagattaaaggtggtagatccctgggacgggaaaccacaccgaagacctatt 7610 Query: 421 cacaaattgggctgtgggaacngtcnaaccaaggcagtacatactcctc 469 ||||||||||||||||||||| ||| | |||||||||||||||||||| Sbjct: 7611 cacaaattgggctgtgggaacggtcg-agcaaggcagtacatactcctc 7658 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,231 Number of Sequences: 18737 Number of extensions: 11231 Number of successful extensions: 244 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 238 Number of HSP's gapped (non-prelim): 3 length of query: 726 length of database: 41,270,998 effective HSP length: 17 effective length of query: 709 effective length of database: 40,952,469 effective search space: 29035300521 effective search space used: 29035300521 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA142063|DMAA42063 CK00198.3prime CK Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone CK00198 3prime, mRNA sequence. (500 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Tequila-RD feature: mRNA loc=3L:join(9033368..9033539,9033774..9... 724 0.0 Tequila-RB feature: mRNA loc=3L:join(9045910..9045977,9046034..9... 724 0.0 Tequila-RA feature: mRNA loc=3L:join(9033392..9033539,9033774..9... 724 0.0 >Tequila-RD feature: mRNA loc=3L:join(9033368..9033539,9033774..9034332, 9046559..9048658,9048729..9049120,9049178..9049333, 9049395..9050175,9050243..9050335,9050447..9050530, 9050592..9050835);ID=FBan0004821;gene_id=FBgn0023479;gene _sym=Tequila;sym=CG4821;scaffold=AE003553;len=4581 Length = 4581 Score = 724 bits (365), Expect = 0.0 Identities = 447/473 (94%), Gaps = 5/473 (1%) Strand = Plus / Minus Query: 1 tctaaaaatgtctgctttattagcaagttcactacaaaattcttataaattagtagtcat 60 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4577 tctaaaaaagtctgctttattagcaagttcactacaaaattcttataaattagtagtcat 4518 Query: 61 gtaanaaggtggatattaaagtgtaaagtgagtatatgctcccttaaaagcgtagcaagc 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4517 gtaagaaggtggatattaaagtgtaaagtgagtatatgctcccttaaaagcgtagcaagc 4458 Query: 121 tctcattgattttctcgtaaatccaatcgatatagtgattcacacggacgtaaacacccg 180 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct: 4457 tctcattgattttctcgtagatccaatcgatatagtgattcacacggacgtagacacccg 4398 Query: 181 gtctgttcttgaagccgcagtgctgaccccacgaaataagcccgtacaaagtctcgccat 240 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 4397 gtctgttcttgaagccgcagtgctgaccccacgaaataagcccgtacagagtctcgccat 4338 Query: 241 catcatcggagcanacaagtggaccgcctgagtcaccttcacaggcatccacactctcgt 300 | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4337 cgtcatcggagcagacaagtggaccgcctgagtcaccttcacaggcatccacactctcgt 4278 Query: 301 ccatggagccggcgcaaaacatgccttccgacatggctgatccatacacattanattgct 360 |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct: 4277 ccatggagccggcgcagaacatgccttccgacatggctgatccatacacattagattgct 4218 Query: 361 tgcatacgtgatcggccnaaatgggaa-ctcggcggaa-ccnaaacttgcgccgggagtg 418 ||||||||||||||||| ||||||||| |||||||||| || ||||||||| | |||||| Sbjct: 4217 tgcatacgtgatcggccaaaatgggaagctcggcggaacccaaaacttgcg-caggagtg 4159 Query: 419 gacacncctgattaantaaaaacccccatccgnananggtgcacttgcngtcc 471 ||||| || |||| | || || ||||||||| | | ||||||||||| |||| Sbjct: 4158 gacactcccgatttaatagaa--ccccatccggagatggtgcacttgcggtcc 4108 >Tequila-RB feature: mRNA loc=3L:join(9045910..9045977,9046034..9046498, 9046559..9048658,9048729..9049120,9049178..9049333, 9049395..9050175,9050243..9050335,9050447..9050530, 9050592..9050831);ID=FBan0004821;gene_id=FBgn0023479;gene _sym=Tequila;sym=CG4821;scaffold=AE003553;len=4379 Length = 4379 Score = 724 bits (365), Expect = 0.0 Identities = 447/473 (94%), Gaps = 5/473 (1%) Strand = Plus / Minus Query: 1 tctaaaaatgtctgctttattagcaagttcactacaaaattcttataaattagtagtcat 60 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4379 tctaaaaaagtctgctttattagcaagttcactacaaaattcttataaattagtagtcat 4320 Query: 61 gtaanaaggtggatattaaagtgtaaagtgagtatatgctcccttaaaagcgtagcaagc 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4319 gtaagaaggtggatattaaagtgtaaagtgagtatatgctcccttaaaagcgtagcaagc 4260 Query: 121 tctcattgattttctcgtaaatccaatcgatatagtgattcacacggacgtaaacacccg 180 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct: 4259 tctcattgattttctcgtagatccaatcgatatagtgattcacacggacgtagacacccg 4200 Query: 181 gtctgttcttgaagccgcagtgctgaccccacgaaataagcccgtacaaagtctcgccat 240 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 4199 gtctgttcttgaagccgcagtgctgaccccacgaaataagcccgtacagagtctcgccat 4140 Query: 241 catcatcggagcanacaagtggaccgcctgagtcaccttcacaggcatccacactctcgt 300 | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4139 cgtcatcggagcagacaagtggaccgcctgagtcaccttcacaggcatccacactctcgt 4080 Query: 301 ccatggagccggcgcaaaacatgccttccgacatggctgatccatacacattanattgct 360 |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct: 4079 ccatggagccggcgcagaacatgccttccgacatggctgatccatacacattagattgct 4020 Query: 361 tgcatacgtgatcggccnaaatgggaa-ctcggcggaa-ccnaaacttgcgccgggagtg 418 ||||||||||||||||| ||||||||| |||||||||| || ||||||||| | |||||| Sbjct: 4019 tgcatacgtgatcggccaaaatgggaagctcggcggaacccaaaacttgcg-caggagtg 3961 Query: 419 gacacncctgattaantaaaaacccccatccgnananggtgcacttgcngtcc 471 ||||| || |||| | || || ||||||||| | | ||||||||||| |||| Sbjct: 3960 gacactcccgatttaatagaa--ccccatccggagatggtgcacttgcggtcc 3910 >Tequila-RA feature: mRNA loc=3L:join(9033392..9033539,9033774..9034332, 9034382..9034576,9034730..9034975,9035029..9035505, 9035568..9035670,9043196..9043629,9043768..9044010, 9044075..9044539,9044598..9045977,9046034..9046498, 9046559..9048658,9048729..9049120,9049178..9049333, 9049395..9050175,9050243..9050335,9050447..9050530, 9050592..9050835);ID=FBan0004821;gene_id=FBgn0023479;gene _sym=Tequila;sym=CG4821;scaffold=AE003553;len=8565 Length = 8565 Score = 724 bits (365), Expect = 0.0 Identities = 447/473 (94%), Gaps = 5/473 (1%) Strand = Plus / Minus Query: 1 tctaaaaatgtctgctttattagcaagttcactacaaaattcttataaattagtagtcat 60 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8561 tctaaaaaagtctgctttattagcaagttcactacaaaattcttataaattagtagtcat 8502 Query: 61 gtaanaaggtggatattaaagtgtaaagtgagtatatgctcccttaaaagcgtagcaagc 120 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8501 gtaagaaggtggatattaaagtgtaaagtgagtatatgctcccttaaaagcgtagcaagc 8442 Query: 121 tctcattgattttctcgtaaatccaatcgatatagtgattcacacggacgtaaacacccg 180 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct: 8441 tctcattgattttctcgtagatccaatcgatatagtgattcacacggacgtagacacccg 8382 Query: 181 gtctgttcttgaagccgcagtgctgaccccacgaaataagcccgtacaaagtctcgccat 240 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 8381 gtctgttcttgaagccgcagtgctgaccccacgaaataagcccgtacagagtctcgccat 8322 Query: 241 catcatcggagcanacaagtggaccgcctgagtcaccttcacaggcatccacactctcgt 300 | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8321 cgtcatcggagcagacaagtggaccgcctgagtcaccttcacaggcatccacactctcgt 8262 Query: 301 ccatggagccggcgcaaaacatgccttccgacatggctgatccatacacattanattgct 360 |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct: 8261 ccatggagccggcgcagaacatgccttccgacatggctgatccatacacattagattgct 8202 Query: 361 tgcatacgtgatcggccnaaatgggaa-ctcggcggaa-ccnaaacttgcgccgggagtg 418 ||||||||||||||||| ||||||||| |||||||||| || ||||||||| | |||||| Sbjct: 8201 tgcatacgtgatcggccaaaatgggaagctcggcggaacccaaaacttgcg-caggagtg 8143 Query: 419 gacacncctgattaantaaaaacccccatccgnananggtgcacttgcngtcc 471 ||||| || |||| | || || ||||||||| | | ||||||||||| |||| Sbjct: 8142 gacactcccgatttaatagaa--ccccatccggagatggtgcacttgcggtcc 8092 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7082 Number of Sequences: 18737 Number of extensions: 7082 Number of successful extensions: 153 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 147 Number of HSP's gapped (non-prelim): 3 length of query: 500 length of database: 41,270,998 effective HSP length: 17 effective length of query: 483 effective length of database: 40,952,469 effective search space: 19780042527 effective search space used: 19780042527 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA142301|DMAA42301 CK01823.contig CK Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone CK01823 contig, mRNA sequence. (1006 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value mnd-RC feature: mRNA loc=3L:join(14933994..14934033,14936461..14... 1065 0.0 mnd-RB feature: mRNA loc=3L:join(14933994..14934033,14936791..14... 1065 0.0 mnd-RA feature: mRNA loc=3L:join(14936291..14937128,14938728..14... 1065 0.0 >mnd-RC feature: mRNA loc=3L:join(14933994..14934033,14936461..14937128, 14938728..14938946,14939025..14939620, 14939709..14940549);ID=FBan0003297;gene_id=FBgn0002778;ge ne_sym=mnd;sym=CG3297;scaffold=AE003532;len=2364 Length = 2364 Score = 1065 bits (537), Expect = 0.0 Identities = 562/569 (98%), Gaps = 1/569 (0%) Strand = Plus / Minus Query: 439 cgcgttgctaacctatcttaggggtaaattgagacttatcctaactacaagatattcc-t 497 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 2039 cgcgttgctaacctatcttaggggtaaattgagacttatcctaactacaagatattccct 1980 Query: 498 tctatagttgcgttgatcgatacatccacaaaaagcactctcttcccaaagtcgtagagt 557 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 1979 tctatagttgcgttgatcgatacatccacaaaaggccctctcttcccaaagtcgtagagt 1920 Query: 558 cctgcagtcctagtcgaacttctcctggttgggcatacagatgaagaacttggagcacca 617 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1919 cctgcagtcctagtcgaacttctcctggttgggcatacagatgaagaatttggagcacca 1860 Query: 618 caggttgatcgcctgcgaagtgtccgccagccatttgaccggtttgtggatggtcagata 677 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1859 caggttgatcgcctgcgaagtgtccgccagccatttgaccggtttgtggatggtcaggta 1800 Query: 678 gtagaccggaattccagacagtataatgatcgtcccgattcctaccacatatggcgtctg 737 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1799 gtagaccggaattccagacagtataatgatcgtcccgattcctaccacatatggcgtctg 1740 Query: 738 cgtgcaggagaagatgaccaggaacaggcagacgatcagatagatgatgggcagcgccaa 797 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1739 cgtgcaagagaagatgaccaggaacaggcagacgatcagatagatgatgggcagcgccaa 1680 Query: 798 gttgaccttgatgggtcgctccgtcttgggttgcttgtagcgcatccacagcagtccgga 857 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1679 gttgaccttgatgggtcgctccgtcttgggttgcttgtagcgcatccacagcagtccgga 1620 Query: 858 taccgagatcagcgtgaacaacgcctccacgtagctgacgtagttgattagtacgtagac 917 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1619 taccgagatcagcgtgaacaacgcctccacgtagctgacgtagttgattagtacgtagac 1560 Query: 918 gtcctcgatgaacagcagcagcaaggtgagcacgcccaggaatatcagcgagagcacagg 977 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 1559 gtcctcgatgaacagcagcagcaaggtgagcacgcccaggaatatcagcgagggcacagg 1500 Query: 978 tgtcaggcaattaacgttaatcagcgaaa 1006 ||||||||||||||||||||||||||||| Sbjct: 1499 tgtcaggcaattaacgttaatcagcgaaa 1471 >mnd-RB feature: mRNA loc=3L:join(14933994..14934033,14936791..14937128, 14938728..14938946,14939025..14939620, 14939709..14940549);ID=FBan0003297;gene_id=FBgn0002778;ge ne_sym=mnd;sym=CG3297;scaffold=AE003532;len=2034 Length = 2034 Score = 1065 bits (537), Expect = 0.0 Identities = 562/569 (98%), Gaps = 1/569 (0%) Strand = Plus / Minus Query: 439 cgcgttgctaacctatcttaggggtaaattgagacttatcctaactacaagatattcc-t 497 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 1709 cgcgttgctaacctatcttaggggtaaattgagacttatcctaactacaagatattccct 1650 Query: 498 tctatagttgcgttgatcgatacatccacaaaaagcactctcttcccaaagtcgtagagt 557 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 1649 tctatagttgcgttgatcgatacatccacaaaaggccctctcttcccaaagtcgtagagt 1590 Query: 558 cctgcagtcctagtcgaacttctcctggttgggcatacagatgaagaacttggagcacca 617 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1589 cctgcagtcctagtcgaacttctcctggttgggcatacagatgaagaatttggagcacca 1530 Query: 618 caggttgatcgcctgcgaagtgtccgccagccatttgaccggtttgtggatggtcagata 677 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1529 caggttgatcgcctgcgaagtgtccgccagccatttgaccggtttgtggatggtcaggta 1470 Query: 678 gtagaccggaattccagacagtataatgatcgtcccgattcctaccacatatggcgtctg 737 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1469 gtagaccggaattccagacagtataatgatcgtcccgattcctaccacatatggcgtctg 1410 Query: 738 cgtgcaggagaagatgaccaggaacaggcagacgatcagatagatgatgggcagcgccaa 797 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1409 cgtgcaagagaagatgaccaggaacaggcagacgatcagatagatgatgggcagcgccaa 1350 Query: 798 gttgaccttgatgggtcgctccgtcttgggttgcttgtagcgcatccacagcagtccgga 857 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1349 gttgaccttgatgggtcgctccgtcttgggttgcttgtagcgcatccacagcagtccgga 1290 Query: 858 taccgagatcagcgtgaacaacgcctccacgtagctgacgtagttgattagtacgtagac 917 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1289 taccgagatcagcgtgaacaacgcctccacgtagctgacgtagttgattagtacgtagac 1230 Query: 918 gtcctcgatgaacagcagcagcaaggtgagcacgcccaggaatatcagcgagagcacagg 977 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 1229 gtcctcgatgaacagcagcagcaaggtgagcacgcccaggaatatcagcgagggcacagg 1170 Query: 978 tgtcaggcaattaacgttaatcagcgaaa 1006 ||||||||||||||||||||||||||||| Sbjct: 1169 tgtcaggcaattaacgttaatcagcgaaa 1141 >mnd-RA feature: mRNA loc=3L:join(14936291..14937128,14938728..14938946, 14939025..14939620, 14939709..14940549);ID=FBan0003297;gene_id=FBgn0002778;ge ne_sym=mnd;sym=CG3297;scaffold=AE003532;len=2494 Length = 2494 Score = 1065 bits (537), Expect = 0.0 Identities = 562/569 (98%), Gaps = 1/569 (0%) Strand = Plus / Minus Query: 439 cgcgttgctaacctatcttaggggtaaattgagacttatcctaactacaagatattcc-t 497 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 2169 cgcgttgctaacctatcttaggggtaaattgagacttatcctaactacaagatattccct 2110 Query: 498 tctatagttgcgttgatcgatacatccacaaaaagcactctcttcccaaagtcgtagagt 557 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct: 2109 tctatagttgcgttgatcgatacatccacaaaaggccctctcttcccaaagtcgtagagt 2050 Query: 558 cctgcagtcctagtcgaacttctcctggttgggcatacagatgaagaacttggagcacca 617 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 2049 cctgcagtcctagtcgaacttctcctggttgggcatacagatgaagaatttggagcacca 1990 Query: 618 caggttgatcgcctgcgaagtgtccgccagccatttgaccggtttgtggatggtcagata 677 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1989 caggttgatcgcctgcgaagtgtccgccagccatttgaccggtttgtggatggtcaggta 1930 Query: 678 gtagaccggaattccagacagtataatgatcgtcccgattcctaccacatatggcgtctg 737 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1929 gtagaccggaattccagacagtataatgatcgtcccgattcctaccacatatggcgtctg 1870 Query: 738 cgtgcaggagaagatgaccaggaacaggcagacgatcagatagatgatgggcagcgccaa 797 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1869 cgtgcaagagaagatgaccaggaacaggcagacgatcagatagatgatgggcagcgccaa 1810 Query: 798 gttgaccttgatgggtcgctccgtcttgggttgcttgtagcgcatccacagcagtccgga 857 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1809 gttgaccttgatgggtcgctccgtcttgggttgcttgtagcgcatccacagcagtccgga 1750 Query: 858 taccgagatcagcgtgaacaacgcctccacgtagctgacgtagttgattagtacgtagac 917 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1749 taccgagatcagcgtgaacaacgcctccacgtagctgacgtagttgattagtacgtagac 1690 Query: 918 gtcctcgatgaacagcagcagcaaggtgagcacgcccaggaatatcagcgagagcacagg 977 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 1689 gtcctcgatgaacagcagcagcaaggtgagcacgcccaggaatatcagcgagggcacagg 1630 Query: 978 tgtcaggcaattaacgttaatcagcgaaa 1006 ||||||||||||||||||||||||||||| Sbjct: 1629 tgtcaggcaattaacgttaatcagcgaaa 1601 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 36,435 Number of Sequences: 18737 Number of extensions: 36435 Number of successful extensions: 1252 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1246 Number of HSP's gapped (non-prelim): 3 length of query: 1006 length of database: 41,270,998 effective HSP length: 18 effective length of query: 988 effective length of database: 40,933,732 effective search space: 40442527216 effective search space used: 40442527216 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA694861|AA694861 GM01687.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM01687 5, mRNA sequence. (398 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32230-RB feature: mRNA loc=3L:complement(23175851..23176000,23... 710 0.0 CG32230-RA feature: mRNA loc=3L:complement(23175857..23176000,23... 628 e-180 >CG32230-RB feature: mRNA loc=3L:complement(23175851..23176000,23177777..23177923, 23177981..23178027, 23178088..23178127);ID=FBan0032230;gene_id=FBgn0052230;g ene_sym=CG32230;sym=CG32230;scaffold=AE002656;len=384 Length = 384 Score = 710 bits (358), Expect = 0.0 Identities = 374/382 (97%) Strand = Plus / Plus Query: 1 atatagttccattctgttttattggattgagtaaagttagacaaaatgcaaggtcttggt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atatagttccattctgttttattggattgagtaaagttagacaaaatgcaaggtcttggt 60 Query: 61 ctgcaaagtcttnnnnnnnntccagctttaattccactttatgtgtgcgttggagcggga 120 |||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ctgcaaagtcttaaaaaaaatccagctttaattccactttatgtgtgcgttggagcggga 120 Query: 121 gctattggagccgtctactatatggctcgacttgctactcgtaatcccgatgtcacttgg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 gctattggagccgtctactatatggctcgacttgctactcgtaatcccgatgtcacttgg 180 Query: 181 aatcgcacatcaaatcccgaaccatggcaagagtacaaagaaaagcaatacaagttttat 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 aatcgcacatcaaatcccgaaccatggcaagagtacaaagaaaagcaatacaagttttat 240 Query: 241 tcgcctgtgagggattattccaaaactaagagtgctgccccaaactttgatgaataaatt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 tcgcctgtgagggattattccaaaactaagagtgctgccccaaactttgatgaataaatt 300 Query: 301 acgtttccctagcagctgcaatttaaaaatgtaaaatgaaataacttcaaattataaata 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 acgtttccctagcagctgcaatttaaaaatgtaaaatgaaataacttcaaattataaata 360 Query: 361 aacatagtggatttgaaagcgt 382 |||||||||||||||||||||| Sbjct: 361 aacatagtggatttgaaagcgt 382 >CG32230-RA feature: mRNA loc=3L:complement(23175857..23176000,23177777..23177923, 23177981..23178132);ID=FBan0032230;gene_id=FBgn0052230;g ene_sym=CG32230;sym=CG32230;scaffold=AE002656;len=443 Length = 443 Score = 628 bits (317), Expect = e-180 Identities = 333/341 (97%) Strand = Plus / Plus Query: 38 tagacaaaatgcaaggtcttggtctgcaaagtcttnnnnnnnntccagctttaattccac 97 ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 103 tagacaaaatgcaaggtcttggtctgcaaagtcttaaaaaaaatccagctttaattccac 162 Query: 98 tttatgtgtgcgttggagcgggagctattggagccgtctactatatggctcgacttgcta 157 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 163 tttatgtgtgcgttggagcgggagctattggagccgtctactatatggctcgacttgcta 222 Query: 158 ctcgtaatcccgatgtcacttggaatcgcacatcaaatcccgaaccatggcaagagtaca 217 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 223 ctcgtaatcccgatgtcacttggaatcgcacatcaaatcccgaaccatggcaagagtaca 282 Query: 218 aagaaaagcaatacaagttttattcgcctgtgagggattattccaaaactaagagtgctg 277 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 283 aagaaaagcaatacaagttttattcgcctgtgagggattattccaaaactaagagtgctg 342 Query: 278 ccccaaactttgatgaataaattacgtttccctagcagctgcaatttaaaaatgtaaaat 337 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 343 ccccaaactttgatgaataaattacgtttccctagcagctgcaatttaaaaatgtaaaat 402 Query: 338 gaaataacttcaaattataaataaacatagtggatttgaaa 378 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 403 gaaataacttcaaattataaataaacatagtggatttgaaa 443 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8047 Number of Sequences: 18737 Number of extensions: 8047 Number of successful extensions: 668 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 663 Number of HSP's gapped (non-prelim): 5 length of query: 398 length of database: 41,270,998 effective HSP length: 17 effective length of query: 381 effective length of database: 40,952,469 effective search space: 15602890689 effective search space used: 15602890689 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI061996|AI061996 GH01027.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH01027 5 similar to CG10124: FBan0010124 'translation factor' located on: 3L 65C1-65C1;: 04/09/2001, mRNA sequence. (669 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG10124-RA feature: mRNA loc=3L:complement(6623757..6624120,6624... 1296 0.0 >CG10124-RA feature: mRNA loc=3L:complement(6623757..6624120,6624376..6624463, 6624544..6624643, 6624696..6625170);ID=FBan0010124;gene_id=FBgn0035709;gen e_sym=CG10124;sym=CG10124;scaffold=AE003561;len=1027 Length = 1027 Score = 1296 bits (654), Expect = 0.0 Identities = 668/670 (99%), Gaps = 2/670 (0%) Strand = Plus / Plus Query: 1 ccccttatacacattctcgtgttgtggctgtgaaatcgtttttcccaggtgatctgaaat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9 ccccttatacacattctcgtgttgtggctgtgaaatcgtttttcccaggtgatctgaaat 68 Query: 61 tttattagcatccattgttataaatttgaatcagtataaaagatcattcgccaaatacac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 69 tttattagcatccattgttataaatttgaatcagtataaaagatcattcgccaaatacac 128 Query: 121 tcaaccatgctgacgacccagcagaccgaattcaagatgatggacaacggcaccgagacg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 129 tcaaccatgctgacgacccagcagaccgaattcaagatgatggacaacggcaccgagacg 188 Query: 181 ctggccgattctccttcgagttccagcgaggatctgaaaacgctttcggatatggatatt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 189 ctggccgattctccttcgagttccagcgaggatctgaaaacgctttcggatatggatatt 248 Query: 241 cgcaagcccgtaacggagattgttgatttgcgccttaagcatccgctagagaacacttgg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 249 cgcaagcccgtaacggagattgttgatttgcgccttaagcatccgctagagaacacttgg 308 Query: 301 acactgtggtacttggagaatgatcgcagcaagaactgggaggacatgcagaacgagatt 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 309 acactgtggtacttggagaatgatcgcagcaagaactgggaggacatgcagaacgagatt 368 Query: 361 actagctttgacatggtcgaggacttctggagtctctacaatcacattaagcagccatct 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 369 actagctttgacatggtcgaggacttctggagtctctacaatcacattaagcagccatct 428 Query: 421 gagattagagtgggcagcgattattctttgttcaagaagggcattcagccaatgtgggag 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 429 gagattagagtgggcagcgattattctttgttcaagaagggcattcagccaatgtgggag 488 Query: 481 gatgatgcgaacaagttcggcggccgttggggtcatcaatatggggcgtggctccaaagc 540 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 489 gatgatgcgaacaagttcggcggccgtt-gggtcatcaatatggggcgtggctccaaagc 547 Query: 541 gga-ctcgacaagctttggttagatgtgctactcatactgattggcgaggcctttgaaaa 599 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 548 ggagctcgacaagctttggttagatgtgctactcatactgattggcgaggcctttgaaaa 607 Query: 600 caccgaggaagtctgcggcgccgttatcaacttgcgcgggaagagcaacaaaatttcgat 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 608 caccgaggaagtctgcggcgccgttatcaacttgcgcgggaagagcaacaaaatttcgat 667 Query: 660 ttggaccgcc 669 |||||||||| Sbjct: 668 ttggaccgcc 677 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,818 Number of Sequences: 18737 Number of extensions: 14818 Number of successful extensions: 273 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 270 Number of HSP's gapped (non-prelim): 1 length of query: 669 length of database: 41,270,998 effective HSP length: 17 effective length of query: 652 effective length of database: 40,952,469 effective search space: 26701009788 effective search space used: 26701009788 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI062993|AI062993 GH02390.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH02390 5prime, mRNA sequence. (588 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG7920-RA feature: mRNA loc=3R:complement(25825555..25826205,258... 924 0.0 >CG7920-RA feature: mRNA loc=3R:complement(25825555..25826205,25826291..25826695, 25826757..25827149, 25829903..25830452);ID=FBan0007920;gene_id=FBgn0039737;ge ne_sym=CG7920;sym=CG7920;scaffold=AE003772;len=1999 Length = 1999 Score = 924 bits (466), Expect = 0.0 Identities = 466/466 (100%) Strand = Plus / Plus Query: 1 gagggtctcgatggactgggtgtgccaattattgccatgccatcgaccaccaacaagggc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1525 gagggtctcgatggactgggtgtgccaattattgccatgccatcgaccaccaacaagggc 1584 Query: 61 gagagcaagattgttcccacgctgaaggaaggcgctggcgtcgtcacttcgcgtgcccac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1585 gagagcaagattgttcccacgctgaaggaaggcgctggcgtcgtcacttcgcgtgcccac 1644 Query: 121 gtccactacgtcgtcacggagcatggaatcgcctcgctgttcggcaagaacgtgcgccag 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1645 gtccactacgtcgtcacggagcatggaatcgcctcgctgttcggcaagaacgtgcgccag 1704 Query: 181 aggatgtacgaactcatccagatcgccgatcccaagcaccgcgagaccctggagaaacaa 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1705 aggatgtacgaactcatccagatcgccgatcccaagcaccgcgagaccctggagaaacaa 1764 Query: 241 gccttcgagcgcatcaaggttatgccctcgccgaactaagcaagcactgaagaagcacta 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1765 gccttcgagcgcatcaaggttatgccctcgccgaactaagcaagcactgaagaagcacta 1824 Query: 301 gagatcactatttactagcagcgacccgcaatctttgaaggcattcccgatatcgctttg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1825 gagatcactatttactagcagcgacccgcaatctttgaaggcattcccgatatcgctttg 1884 Query: 361 atccacttcatagaactgcaatcatgatagccctttagcattaccaaatctgaaatttca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1885 atccacttcatagaactgcaatcatgatagccctttagcattaccaaatctgaaatttca 1944 Query: 421 attgatgagtaacgaattgatgggagaaataaaactgaaattgatt 466 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1945 attgatgagtaacgaattgatgggagaaataaaactgaaattgatt 1990 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,435 Number of Sequences: 18737 Number of extensions: 12435 Number of successful extensions: 261 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 260 Number of HSP's gapped (non-prelim): 1 length of query: 588 length of database: 41,270,998 effective HSP length: 17 effective length of query: 571 effective length of database: 40,952,469 effective search space: 23383859799 effective search space used: 23383859799 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI063119|AI063119 GH02609.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH02609 5prime, mRNA sequence. (570 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,226 Number of Sequences: 18737 Number of extensions: 11226 Number of successful extensions: 290 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 290 Number of HSP's gapped (non-prelim): 0 length of query: 570 length of database: 41,270,998 effective HSP length: 17 effective length of query: 553 effective length of database: 40,952,469 effective search space: 22646715357 effective search space used: 22646715357 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI063201|AI063201 GH02734.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH02734 5prime, mRNA sequence. (635 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32039-RA feature: mRNA loc=3L:join(9317733..9317897,9317956..9... 1136 0.0 >CG32039-RA feature: mRNA loc=3L:join(9317733..9317897,9317956..9318126, 9318186..9318714);ID=FBan0032039;gene_id=FBgn0052039;gen e_sym=CG32039;sym=CG32039;scaffold=AE003552;len=865 Length = 865 Score = 1136 bits (573), Expect = 0.0 Identities = 593/603 (98%) Strand = Plus / Plus Query: 1 cgaaaaccaagcaaaattccaaaaggaagccttatttttcgnnnnnnnnnnctataaaca 60 ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 6 cgaaaaccaagcaaaattccaaaaggaagccttatttttcgaaaaaaaaaactataaaca 65 Query: 61 aacccatattataacttattcaattcaatttaacaccatgggagcctgtctgtcctgctg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 66 aacccatattataacttattcaattcaatttaacaccatgggagcctgtctgtcctgctg 125 Query: 121 cggccaaagcgccgaggaaaccaacctgatgccatcgcctgaggagcgccgccagcagca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 126 cggccaaagcgccgaggaaaccaacctgatgccatcgcctgaggagcgccgccagcagca 185 Query: 181 gttggatgcggcggaaaagcgtcgccaggagaatgaacatcggggcattaagaatccgga 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 186 gttggatgcggcggaaaagcgtcgccaggagaatgaacatcggggcattaagaatccgga 245 Query: 241 cagcgtacgccgacagcaacaaagagcggaggaaatgcaacgcagggaggaggaggccgc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 246 cagcgtacgccgacagcaacaaagagcggaggaaatgcaacgcagggaggaggaggccgc 305 Query: 301 ccgtcagggtcaaggacaatccaatcttaggtggcaaactagctaaaaggaagtgaacat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 306 ccgtcagggtcaaggacaatccaatcttaggtggcaaactagctaaaaggaagtgaacat 365 Query: 361 ccatcctggtgtggcttataaagcacatccaaatttgttcccacatctttactgactttt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 366 ccatcctggtgtggcttataaagcacatccaaatttgttcccacatctttactgactttt 425 Query: 421 gtgcaaagtttttgtactactccgtatttgtatttgtattgtatacacctgtttttccga 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 426 gtgcaaagtttttgtactactccgtatttgtatttgtattgtatacacctgtttttccga 485 Query: 481 tctacatatttcatgaatcttcagaaaagaacatcttggattcaacaccatacaaacttt 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 486 tctacatatttcatgaatcttcagaaaagaacatcttggattcaacaccatacaaacttt 545 Query: 541 tagctggcgaccaaaatgtacaaccaaaaataaaatttaaaccaaattgttatcagtgat 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 546 tagctggcgaccaaaatgtacaaccaaaaataaaatttaaaccaaattgttatcagtgat 605 Query: 601 cgt 603 ||| Sbjct: 606 cgt 608 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 18,064 Number of Sequences: 18737 Number of extensions: 18064 Number of successful extensions: 516 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 514 Number of HSP's gapped (non-prelim): 2 length of query: 635 length of database: 41,270,998 effective HSP length: 17 effective length of query: 618 effective length of database: 40,952,469 effective search space: 25308625842 effective search space used: 25308625842 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI063330|AI063330 GH03076.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH03076 5prime, mRNA sequence. (608 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG5325-RA feature: mRNA loc=2L:join(12082642..12082781,12082865.... 1197 0.0 CG5325-RB feature: mRNA loc=2L:join(12082642..12082781,12082865.... 1104 0.0 >CG5325-RA feature: mRNA loc=2L:join(12082642..12082781,12082865..12082982, 12083049..12083352,12083419..12083582, 12083640..12084123);ID=FBan0005325;gene_id=FBgn0032407;g ene_sym=CG5325;sym=CG5325;scaffold=AE003635;len=1210 Length = 1210 Score = 1197 bits (604), Expect = 0.0 Identities = 607/608 (99%) Strand = Plus / Plus Query: 1 tcccactgattgattcagtcagtctttattttttaccatttcccacccaccacgaaatca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7 tcccactgattgattcagtcagtctttattttttaccatttcccacccaccacgaaatca 66 Query: 61 aggaaaagcatcccgaaattgcacaatgtccgaagaaaagaagaatggcgatgaattaaa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 67 aggaaaagcatcccgaaattgcacaatgtccgaagaaaagaagaatggcgatgaattaaa 126 Query: 121 cgacttgctggacagtgctctccaggatttcgataaaagtggtgccggtgaccaaaagga 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 127 cgacttgctggacagtgctctccaggatttcgataaaagtggtgccggtgaccaaaagga 186 Query: 181 gccgtccgcatcatcggatgtggcgaccaacgctggacctgagggctccgaggatccaga 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 187 gccgtccgcatcatcggatgtggcgaccaacgctggacctgagggctccgaggatccaga 246 Query: 241 tgcgtttttcattgagcaggccaaggtgctggccgatcgcatgaacacgctcttcggagg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 247 tgcgtttttcattgagcaggccaaggtgctggccgatcgcatgaacacgctcttcggagg 306 Query: 301 tccggacacgcccagtggcgatattccgccgctgccccaggatcccgaccagatcatggc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 307 tccggacacgcccagtggcgatattccgccgctgccccaggatcccgaccagatcatggc 366 Query: 361 cggtttcaaaaagatggccgaagcggcagcgctcaccttgagcggcgaaaattcggccac 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 367 cggtttcaaaaagatggccgaagcggcagcgctcaccttgagcggcgaaaattcggccac 426 Query: 421 cgacgaggatgtctccaagtattctgatagcatttcccaggctctcaagggtctgcaaga 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 427 cgacgaggatgtctccaagtattctgatagcatttcccaggctctcaagggtctgcaaga 486 Query: 481 gggctccgagaacctggctgctcccgcctcggagaacgacatagccagcatgtttggttc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 487 gggctccgagaacctggctgctcccgcctcggagaacgacatagccagcatgtttggttc 546 Query: 541 actgaatcttgaaggggctggcgagggtgatggaaacatgttcctaccattcatggaagg 600 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 547 actgaatcttgaaggggctggcgagggtgatggaaacatgttcctaccattcatggaggg 606 Query: 601 catgatgc 608 |||||||| Sbjct: 607 catgatgc 614 >CG5325-RB feature: mRNA loc=2L:join(12082642..12082781,12082865..12082982, 12083049..12083506);ID=FBan0005325;gene_id=FBgn0032407;g ene_sym=CG5325;sym=CG5325;scaffold=AE003635;len=716 Length = 716 Score = 1104 bits (557), Expect = 0.0 Identities = 557/557 (100%) Strand = Plus / Plus Query: 1 tcccactgattgattcagtcagtctttattttttaccatttcccacccaccacgaaatca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7 tcccactgattgattcagtcagtctttattttttaccatttcccacccaccacgaaatca 66 Query: 61 aggaaaagcatcccgaaattgcacaatgtccgaagaaaagaagaatggcgatgaattaaa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 67 aggaaaagcatcccgaaattgcacaatgtccgaagaaaagaagaatggcgatgaattaaa 126 Query: 121 cgacttgctggacagtgctctccaggatttcgataaaagtggtgccggtgaccaaaagga 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 127 cgacttgctggacagtgctctccaggatttcgataaaagtggtgccggtgaccaaaagga 186 Query: 181 gccgtccgcatcatcggatgtggcgaccaacgctggacctgagggctccgaggatccaga 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 187 gccgtccgcatcatcggatgtggcgaccaacgctggacctgagggctccgaggatccaga 246 Query: 241 tgcgtttttcattgagcaggccaaggtgctggccgatcgcatgaacacgctcttcggagg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 247 tgcgtttttcattgagcaggccaaggtgctggccgatcgcatgaacacgctcttcggagg 306 Query: 301 tccggacacgcccagtggcgatattccgccgctgccccaggatcccgaccagatcatggc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 307 tccggacacgcccagtggcgatattccgccgctgccccaggatcccgaccagatcatggc 366 Query: 361 cggtttcaaaaagatggccgaagcggcagcgctcaccttgagcggcgaaaattcggccac 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 367 cggtttcaaaaagatggccgaagcggcagcgctcaccttgagcggcgaaaattcggccac 426 Query: 421 cgacgaggatgtctccaagtattctgatagcatttcccaggctctcaagggtctgcaaga 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 427 cgacgaggatgtctccaagtattctgatagcatttcccaggctctcaagggtctgcaaga 486 Query: 481 gggctccgagaacctggctgctcccgcctcggagaacgacatagccagcatgtttggttc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 487 gggctccgagaacctggctgctcccgcctcggagaacgacatagccagcatgtttggttc 546 Query: 541 actgaatcttgaagggg 557 ||||||||||||||||| Sbjct: 547 actgaatcttgaagggg 563 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,096 Number of Sequences: 18737 Number of extensions: 16096 Number of successful extensions: 362 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 359 Number of HSP's gapped (non-prelim): 3 length of query: 608 length of database: 41,270,998 effective HSP length: 17 effective length of query: 591 effective length of database: 40,952,469 effective search space: 24202909179 effective search space used: 24202909179 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI063878|AI063878 GH03983.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH03983 5 similar to X15707: D.melanogaster DNA sequence (isolate CBS) for 18S rRNA (3'end), 5.8S rRNA and 28S rRNA (5'end). CDS:1055..1858; PID:g7693; FLYBASE:FBgn0003909, mRNA sequence. (637 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,065 Number of Sequences: 18737 Number of extensions: 10065 Number of successful extensions: 167 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 167 Number of HSP's gapped (non-prelim): 0 length of query: 637 length of database: 41,270,998 effective HSP length: 17 effective length of query: 620 effective length of database: 40,952,469 effective search space: 25390530780 effective search space used: 25390530780 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI064139|AI064139 GH04411.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH04411 5prime, mRNA sequence. (562 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32230-RB feature: mRNA loc=3L:complement(23175851..23176000,23... 638 0.0 CG32230-RA feature: mRNA loc=3L:complement(23175857..23176000,23... 628 e-179 >CG32230-RB feature: mRNA loc=3L:complement(23175851..23176000,23177777..23177923, 23177981..23178027, 23178088..23178127);ID=FBan0032230;gene_id=FBgn0052230;g ene_sym=CG32230;sym=CG32230;scaffold=AE002656;len=384 Length = 384 Score = 638 bits (322), Expect = 0.0 Identities = 338/346 (97%) Strand = Plus / Plus Query: 1 ttagacaaaatgcaaggtcttggtctgcaaagtcttnnnnnnnntccagctttaattcca 60 |||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 37 ttagacaaaatgcaaggtcttggtctgcaaagtcttaaaaaaaatccagctttaattcca 96 Query: 61 ctttatgtgtgcgttggagcgggagctattggagccgtctactatatggctcgacttgct 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 97 ctttatgtgtgcgttggagcgggagctattggagccgtctactatatggctcgacttgct 156 Query: 121 actcgtaatcccgatgtcacttggaatcgcacatcaaatcccgaaccatggcaagagtac 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 157 actcgtaatcccgatgtcacttggaatcgcacatcaaatcccgaaccatggcaagagtac 216 Query: 181 aaagaaaagcaatacaagttttattcgcctgtgagggattattccaaaactaagagtgct 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 217 aaagaaaagcaatacaagttttattcgcctgtgagggattattccaaaactaagagtgct 276 Query: 241 gccccaaactttgatgaataaattacgtttccctagcagctgcaatttaaaaatgtaaaa 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 277 gccccaaactttgatgaataaattacgtttccctagcagctgcaatttaaaaatgtaaaa 336 Query: 301 tgaaataacttcaaattataaataaacatagtggatttgaaagcgt 346 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 337 tgaaataacttcaaattataaataaacatagtggatttgaaagcgt 382 >CG32230-RA feature: mRNA loc=3L:complement(23175857..23176000,23177777..23177923, 23177981..23178132);ID=FBan0032230;gene_id=FBgn0052230;g ene_sym=CG32230;sym=CG32230;scaffold=AE002656;len=443 Length = 443 Score = 628 bits (317), Expect = e-179 Identities = 333/341 (97%) Strand = Plus / Plus Query: 2 tagacaaaatgcaaggtcttggtctgcaaagtcttnnnnnnnntccagctttaattccac 61 ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 103 tagacaaaatgcaaggtcttggtctgcaaagtcttaaaaaaaatccagctttaattccac 162 Query: 62 tttatgtgtgcgttggagcgggagctattggagccgtctactatatggctcgacttgcta 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 163 tttatgtgtgcgttggagcgggagctattggagccgtctactatatggctcgacttgcta 222 Query: 122 ctcgtaatcccgatgtcacttggaatcgcacatcaaatcccgaaccatggcaagagtaca 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 223 ctcgtaatcccgatgtcacttggaatcgcacatcaaatcccgaaccatggcaagagtaca 282 Query: 182 aagaaaagcaatacaagttttattcgcctgtgagggattattccaaaactaagagtgctg 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 283 aagaaaagcaatacaagttttattcgcctgtgagggattattccaaaactaagagtgctg 342 Query: 242 ccccaaactttgatgaataaattacgtttccctagcagctgcaatttaaaaatgtaaaat 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 343 ccccaaactttgatgaataaattacgtttccctagcagctgcaatttaaaaatgtaaaat 402 Query: 302 gaaataacttcaaattataaataaacatagtggatttgaaa 342 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 403 gaaataacttcaaattataaataaacatagtggatttgaaa 443 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,306 Number of Sequences: 18737 Number of extensions: 13306 Number of successful extensions: 378 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 374 Number of HSP's gapped (non-prelim): 4 length of query: 562 length of database: 41,270,998 effective HSP length: 17 effective length of query: 545 effective length of database: 40,952,469 effective search space: 22319095605 effective search space used: 22319095605 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI064296|AI064296 GH04665.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH04665 5prime, mRNA sequence. (516 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,432 Number of Sequences: 18737 Number of extensions: 12432 Number of successful extensions: 387 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 387 Number of HSP's gapped (non-prelim): 0 length of query: 516 length of database: 41,270,998 effective HSP length: 17 effective length of query: 499 effective length of database: 40,952,469 effective search space: 20435282031 effective search space used: 20435282031 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI064556|AI064556 GH05015.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH05015 5 similar to CG17646: FBan0017646 'transporter' located on: 2L 22B2-22B2;: 04/10/2001, mRNA sequence. (798 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG17646-RB feature: mRNA loc=2L:join(1734191..1734319,1743325..1... 1574 0.0 CG17646-RA feature: mRNA loc=2L:join(1739134..1739684,1743325..1... 1574 0.0 >CG17646-RB feature: mRNA loc=2L:join(1734191..1734319,1743325..1743741, 1743808..1743925,1745010..1745205,1745299..1745444, 1746588..1746826,1746886..1747026,1747384..1747694, 1749357..1749525,1750439..1750539,1751183..1751341, 1751407..1752278);ID=FBan0017646;gene_id=FBgn0031362;gene _sym=CG17646;sym=CG17646;scaffold=AE003585;len=2998 Length = 2998 Score = 1574 bits (794), Expect = 0.0 Identities = 797/798 (99%) Strand = Plus / Plus Query: 1 cgaactggtgcccttcctggccgaccagcagctcgtctgcccgagttaccacaacccagc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1178 cgaactggtgcccttcctggccgaccagcagctcgtctgcccgagttaccacaacccagc 1237 Query: 61 tgactatctactggaagtggccgtgggcgagcatcaacgtgacctgaatgagctaatcca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1238 tgactatctactggaagtggccgtgggcgagcatcaacgtgacctgaatgagctaatcca 1297 Query: 121 tgcggccaataaaaagtattacgaggatgtggatcgccataggtatatgagcagtgatga 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1298 tgcggccaataaaaagtattacgaggatgtggatcgccataggtatatgagcagtgatga 1357 Query: 181 tatggcacgcctcgtggaaagcattaaagaaaacatgggcggcaaggcagtggtaaaaac 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1358 tatggcacgcctcgtggaaagcattaaagaaaacatgggcggcaaggcagtggtaaaaac 1417 Query: 241 cagtgaagcgctggcagcatttgcggcggcgcaattctccagcttcgactatgtaaagcc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1418 cagtgaagcgctggcagcatttgcggcggcgcaattctccagcttcgactatgtaaagcc 1477 Query: 301 ctcgccgcaggagctggctctggaggagatcaaggcactgagcggcggccccgagagcgc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1478 ctcgccgcaggagctggctctggaggagatcaaggcactgagcggcggccccgagagcgc 1537 Query: 361 ggatcccgatctcctcgagaaaaatctgaggccacagccacagccgcttgccaaagccgg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1538 ggatcccgatctcctcgagaaaaatctgaggccacagccacagccgcttgccaaagccgg 1597 Query: 421 tgagcttgccaggccgccgaatgccattcgatcggcctcgttcctcatgcagtatgtgct 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1598 tgagcttgccaggccgccgaatgccattcgatcggcctcgttcctcatgcagtatgtgct 1657 Query: 481 cctgatgcagcgcatcttgatttgcgccaagcgaaactactttctgctgctggcccgcat 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1658 cctgatgcagcgcatcttgatttgcgccaagcgaaactactttctgctgctggcccgcat 1717 Query: 541 cttctcgcacattttcatcggagtcgtcttcgggtatctgtacatgaacgtgggcaacaa 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1718 cttctcgcacattttcatcggagtcgtcttcgggtatctgtacatgaacgtgggcaacaa 1777 Query: 601 tgcccagagtgtgctgggaaactacgtgtatctgtacggctccacgctgctcttggtcta 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1778 tgcccagagtgtgctgggaaactacgtgtatctgtacggctccacgctgctcttggtcta 1837 Query: 661 caccggtaaaatggctgtggtcttgacatttccgctggaaattgacatgttgacacggga 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1838 caccggtaaaatggctgtggtcttgacatttccgctggaaattgacatgttgacacggga 1897 Query: 721 gcacttcaaccgctggtacacactgggtccctacttcctctcgttgatctccttcgaaat 780 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 1898 gcacttcaaccgctggtacaaactgggtccctacttcctctcgttgatctccttcgaaat 1957 Query: 781 acccttccagagcctctg 798 |||||||||||||||||| Sbjct: 1958 acccttccagagcctctg 1975 >CG17646-RA feature: mRNA loc=2L:join(1739134..1739684,1743325..1743741, 1743808..1743925,1745010..1745205,1745299..1745444, 1746588..1746826,1746886..1747026,1747384..1747694, 1749357..1749525,1750439..1750539,1751183..1751341, 1751407..1752278);ID=FBan0017646;gene_id=FBgn0031362;gene _sym=CG17646;sym=CG17646;scaffold=AE003585;len=3420 Length = 3420 Score = 1574 bits (794), Expect = 0.0 Identities = 797/798 (99%) Strand = Plus / Plus Query: 1 cgaactggtgcccttcctggccgaccagcagctcgtctgcccgagttaccacaacccagc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1600 cgaactggtgcccttcctggccgaccagcagctcgtctgcccgagttaccacaacccagc 1659 Query: 61 tgactatctactggaagtggccgtgggcgagcatcaacgtgacctgaatgagctaatcca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1660 tgactatctactggaagtggccgtgggcgagcatcaacgtgacctgaatgagctaatcca 1719 Query: 121 tgcggccaataaaaagtattacgaggatgtggatcgccataggtatatgagcagtgatga 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1720 tgcggccaataaaaagtattacgaggatgtggatcgccataggtatatgagcagtgatga 1779 Query: 181 tatggcacgcctcgtggaaagcattaaagaaaacatgggcggcaaggcagtggtaaaaac 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1780 tatggcacgcctcgtggaaagcattaaagaaaacatgggcggcaaggcagtggtaaaaac 1839 Query: 241 cagtgaagcgctggcagcatttgcggcggcgcaattctccagcttcgactatgtaaagcc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1840 cagtgaagcgctggcagcatttgcggcggcgcaattctccagcttcgactatgtaaagcc 1899 Query: 301 ctcgccgcaggagctggctctggaggagatcaaggcactgagcggcggccccgagagcgc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1900 ctcgccgcaggagctggctctggaggagatcaaggcactgagcggcggccccgagagcgc 1959 Query: 361 ggatcccgatctcctcgagaaaaatctgaggccacagccacagccgcttgccaaagccgg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1960 ggatcccgatctcctcgagaaaaatctgaggccacagccacagccgcttgccaaagccgg 2019 Query: 421 tgagcttgccaggccgccgaatgccattcgatcggcctcgttcctcatgcagtatgtgct 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2020 tgagcttgccaggccgccgaatgccattcgatcggcctcgttcctcatgcagtatgtgct 2079 Query: 481 cctgatgcagcgcatcttgatttgcgccaagcgaaactactttctgctgctggcccgcat 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2080 cctgatgcagcgcatcttgatttgcgccaagcgaaactactttctgctgctggcccgcat 2139 Query: 541 cttctcgcacattttcatcggagtcgtcttcgggtatctgtacatgaacgtgggcaacaa 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2140 cttctcgcacattttcatcggagtcgtcttcgggtatctgtacatgaacgtgggcaacaa 2199 Query: 601 tgcccagagtgtgctgggaaactacgtgtatctgtacggctccacgctgctcttggtcta 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2200 tgcccagagtgtgctgggaaactacgtgtatctgtacggctccacgctgctcttggtcta 2259 Query: 661 caccggtaaaatggctgtggtcttgacatttccgctggaaattgacatgttgacacggga 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2260 caccggtaaaatggctgtggtcttgacatttccgctggaaattgacatgttgacacggga 2319 Query: 721 gcacttcaaccgctggtacacactgggtccctacttcctctcgttgatctccttcgaaat 780 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 2320 gcacttcaaccgctggtacaaactgggtccctacttcctctcgttgatctccttcgaaat 2379 Query: 781 acccttccagagcctctg 798 |||||||||||||||||| Sbjct: 2380 acccttccagagcctctg 2397 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 23,130 Number of Sequences: 18737 Number of extensions: 23130 Number of successful extensions: 577 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 575 Number of HSP's gapped (non-prelim): 2 length of query: 798 length of database: 41,270,998 effective HSP length: 17 effective length of query: 781 effective length of database: 40,952,469 effective search space: 31983878289 effective search space used: 31983878289 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI064611|AI064611 GH05075.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH05075 3prime similar to M77518: 14-3-3 FBgn0004907 PID:g156783 SWISS-PROT:P29310, mRNA sequence. (544 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value 14-3-3zeta-RE feature: mRNA loc=2R:join(5160321..5160371,5164889... 954 0.0 14-3-3zeta-RD feature: mRNA loc=2R:join(5161665..5161730,5164889... 954 0.0 14-3-3zeta-RH feature: mRNA loc=2R:join(5160321..5160371,5164889... 811 0.0 14-3-3zeta-RG feature: mRNA loc=2R:join(5161665..5161810,5164889... 811 0.0 14-3-3zeta-RB feature: mRNA loc=2R:join(5160312..5160483,5164889... 811 0.0 14-3-3zeta-RA feature: mRNA loc=2R:join(5161665..5161730,5164889... 811 0.0 14-3-3zeta-RF feature: mRNA loc=2R:join(5160321..5160371,5164889... 620 e-177 14-3-3zeta-RC feature: mRNA loc=2R:join(5161665..5161730,5164889... 620 e-177 >14-3-3zeta-RE feature: mRNA loc=2R:join(5160321..5160371,5164889..5165042, 5165350..5165463,5165574..5165700,5166335..5166458, 5166574..5166737, 5168100..5170320);ID=FBan0017870;gene_id=FBgn0004907;gen e_sym=14-3-3zeta;sym=CG17870;scaffold=AE003831;len=2955 Length = 2955 Score = 954 bits (481), Expect = 0.0 Identities = 481/481 (100%) Strand = Plus / Minus Query: 64 tattactgaataatatttgcatagtcaaaaaggaaacatttgcttagttgtttggttagt 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 945 tattactgaataatatttgcatagtcaaaaaggaaacatttgcttagttgtttggttagt 886 Query: 124 tgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcggacgtccagagagtca 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 885 tgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcggacgtccagagagtca 826 Query: 184 ggttgtccctcaacagctgcatgatgagtgtcgagtccttgtaggagtcctcgttcagtg 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 825 ggttgtccctcaacagctgcatgatgagtgtcgagtccttgtaggagtcctcgttcagtg 766 Query: 244 tgtccagctcggctatcgcatcatcgaacgcctgtttagccaattggcaagctttgtctg 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 765 tgtccagctcggctatcgcatcatcgaacgcctgtttagccaattggcaagctttgtctg 706 Query: 304 gtgagttcaaaatctcatagtagaagactgagaagttaagggccagacccaaacggatgg 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 705 gtgagttcaaaatctcatagtagaagactgagaagttaagggccagacccaaacggatgg 646 Query: 364 gatgtgttggctgcattttacccttgctaatgtcaaatgcatcctggtaagcggtttgcg 423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 645 gatgtgttggctgcattttacccttgctaatgtcaaatgcatcctggtaagcggtttgcg 586 Query: 424 agtcatcgacaacggtgttgcgtgcatctcctgtggcaacctcggctaaatacctgtagt 483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 585 agtcatcgacaacggtgttgcgtgcatctcctgtggcaacctcggctaaatacctgtagt 526 Query: 484 aatcacccttcatcttcaggtaaaacaccttgctctcgggattgctggcttttggaataa 543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 525 aatcacccttcatcttcaggtaaaacaccttgctctcgggattgctggcttttggaataa 466 Query: 544 g 544 | Sbjct: 465 g 465 >14-3-3zeta-RD feature: mRNA loc=2R:join(5161665..5161730,5164889..5165042, 5165350..5165463,5165574..5165700,5166335..5166458, 5166574..5166737, 5168100..5170320);ID=FBan0017870;gene_id=FBgn0004907;gen e_sym=14-3-3zeta;sym=CG17870;scaffold=AE003831;len=2970 Length = 2970 Score = 954 bits (481), Expect = 0.0 Identities = 481/481 (100%) Strand = Plus / Minus Query: 64 tattactgaataatatttgcatagtcaaaaaggaaacatttgcttagttgtttggttagt 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 960 tattactgaataatatttgcatagtcaaaaaggaaacatttgcttagttgtttggttagt 901 Query: 124 tgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcggacgtccagagagtca 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 900 tgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcggacgtccagagagtca 841 Query: 184 ggttgtccctcaacagctgcatgatgagtgtcgagtccttgtaggagtcctcgttcagtg 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 840 ggttgtccctcaacagctgcatgatgagtgtcgagtccttgtaggagtcctcgttcagtg 781 Query: 244 tgtccagctcggctatcgcatcatcgaacgcctgtttagccaattggcaagctttgtctg 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 780 tgtccagctcggctatcgcatcatcgaacgcctgtttagccaattggcaagctttgtctg 721 Query: 304 gtgagttcaaaatctcatagtagaagactgagaagttaagggccagacccaaacggatgg 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 720 gtgagttcaaaatctcatagtagaagactgagaagttaagggccagacccaaacggatgg 661 Query: 364 gatgtgttggctgcattttacccttgctaatgtcaaatgcatcctggtaagcggtttgcg 423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 660 gatgtgttggctgcattttacccttgctaatgtcaaatgcatcctggtaagcggtttgcg 601 Query: 424 agtcatcgacaacggtgttgcgtgcatctcctgtggcaacctcggctaaatacctgtagt 483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 600 agtcatcgacaacggtgttgcgtgcatctcctgtggcaacctcggctaaatacctgtagt 541 Query: 484 aatcacccttcatcttcaggtaaaacaccttgctctcgggattgctggcttttggaataa 543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 540 aatcacccttcatcttcaggtaaaacaccttgctctcgggattgctggcttttggaataa 481 Query: 544 g 544 | Sbjct: 480 g 480 >14-3-3zeta-RH feature: mRNA loc=2R:join(5160321..5160371,5164889..5165042, 5165350..5165463,5165574..5165700,5166335..5166458, 5166922..5167085, 5168100..5170320);ID=FBan0017870;gene_id=FBgn0004907;gen e_sym=14-3-3zeta;sym=CG17870;scaffold=AE003831;len=2955 Length = 2955 Score = 811 bits (409), Expect = 0.0 Identities = 463/481 (96%) Strand = Plus / Minus Query: 64 tattactgaataatatttgcatagtcaaaaaggaaacatttgcttagttgtttggttagt 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 945 tattactgaataatatttgcatagtcaaaaaggaaacatttgcttagttgtttggttagt 886 Query: 124 tgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcggacgtccagagagtca 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 885 tgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcggacgtccagagagtca 826 Query: 184 ggttgtccctcaacagctgcatgatgagtgtcgagtccttgtaggagtcctcgttcagtg 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 825 ggttgtccctcaacagctgcatgatgagtgtcgagtccttgtaggagtcctcgttcagtg 766 Query: 244 tgtccagctcggctatcgcatcatcgaacgcctgtttagccaattggcaagctttgtctg 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 765 tgtccagctcggctatcgcatcatcgaacgcctgtttagccaattggcaagctttgtctg 706 Query: 304 gtgagttcaaaatctcatagtagaagactgagaagttaagggccagacccaaacggatgg 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 705 gtgagttcaaaatctcatagtagaagactgagaagttaagggccagacccaaacggatgg 646 Query: 364 gatgtgttggctgcattttacccttgctaatgtcaaatgcatcctggtaagcggtttgcg 423 ||||||||||||||||||| || ||| || || || ||||| || || ||| || Sbjct: 645 gatgtgttggctgcattttggtttttgcaatatcgaacgcctcctgataggcatttttcg 586 Query: 424 agtcatcgacaacggtgttgcgtgcatctcctgtggcaacctcggctaaatacctgtagt 483 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 585 agtcatcaacgacggtgttgcgtgcatctcctgtggcaacctcggctaaatacctgtagt 526 Query: 484 aatcacccttcatcttcaggtaaaacaccttgctctcgggattgctggcttttggaataa 543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 525 aatcacccttcatcttcaggtaaaacaccttgctctcgggattgctggcttttggaataa 466 Query: 544 g 544 | Sbjct: 465 g 465 >14-3-3zeta-RG feature: mRNA loc=2R:join(5161665..5161810,5164889..5165042, 5165350..5165463,5165574..5165700,5166335..5166458, 5166922..5167085, 5168100..5170320);ID=FBan0017870;gene_id=FBgn0004907;gene _sym=14-3-3zeta;sym=CG17870;scaffold=AE003831;len=3050 Length = 3050 Score = 811 bits (409), Expect = 0.0 Identities = 463/481 (96%) Strand = Plus / Minus Query: 64 tattactgaataatatttgcatagtcaaaaaggaaacatttgcttagttgtttggttagt 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1040 tattactgaataatatttgcatagtcaaaaaggaaacatttgcttagttgtttggttagt 981 Query: 124 tgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcggacgtccagagagtca 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 980 tgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcggacgtccagagagtca 921 Query: 184 ggttgtccctcaacagctgcatgatgagtgtcgagtccttgtaggagtcctcgttcagtg 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 920 ggttgtccctcaacagctgcatgatgagtgtcgagtccttgtaggagtcctcgttcagtg 861 Query: 244 tgtccagctcggctatcgcatcatcgaacgcctgtttagccaattggcaagctttgtctg 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 860 tgtccagctcggctatcgcatcatcgaacgcctgtttagccaattggcaagctttgtctg 801 Query: 304 gtgagttcaaaatctcatagtagaagactgagaagttaagggccagacccaaacggatgg 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 800 gtgagttcaaaatctcatagtagaagactgagaagttaagggccagacccaaacggatgg 741 Query: 364 gatgtgttggctgcattttacccttgctaatgtcaaatgcatcctggtaagcggtttgcg 423 ||||||||||||||||||| || ||| || || || ||||| || || ||| || Sbjct: 740 gatgtgttggctgcattttggtttttgcaatatcgaacgcctcctgataggcatttttcg 681 Query: 424 agtcatcgacaacggtgttgcgtgcatctcctgtggcaacctcggctaaatacctgtagt 483 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 680 agtcatcaacgacggtgttgcgtgcatctcctgtggcaacctcggctaaatacctgtagt 621 Query: 484 aatcacccttcatcttcaggtaaaacaccttgctctcgggattgctggcttttggaataa 543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 620 aatcacccttcatcttcaggtaaaacaccttgctctcgggattgctggcttttggaataa 561 Query: 544 g 544 | Sbjct: 560 g 560 >14-3-3zeta-RB feature: mRNA loc=2R:join(5160312..5160483,5164889..5165042, 5165350..5165463,5165574..5165700,5166335..5166458, 5166922..5167085, 5168100..5170320);ID=FBan0017870;gene_id=FBgn0004907;gene _sym=14-3-3zeta;sym=CG17870;scaffold=AE003831;len=3076 Length = 3076 Score = 811 bits (409), Expect = 0.0 Identities = 463/481 (96%) Strand = Plus / Minus Query: 64 tattactgaataatatttgcatagtcaaaaaggaaacatttgcttagttgtttggttagt 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1066 tattactgaataatatttgcatagtcaaaaaggaaacatttgcttagttgtttggttagt 1007 Query: 124 tgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcggacgtccagagagtca 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1006 tgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcggacgtccagagagtca 947 Query: 184 ggttgtccctcaacagctgcatgatgagtgtcgagtccttgtaggagtcctcgttcagtg 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 946 ggttgtccctcaacagctgcatgatgagtgtcgagtccttgtaggagtcctcgttcagtg 887 Query: 244 tgtccagctcggctatcgcatcatcgaacgcctgtttagccaattggcaagctttgtctg 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 886 tgtccagctcggctatcgcatcatcgaacgcctgtttagccaattggcaagctttgtctg 827 Query: 304 gtgagttcaaaatctcatagtagaagactgagaagttaagggccagacccaaacggatgg 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 826 gtgagttcaaaatctcatagtagaagactgagaagttaagggccagacccaaacggatgg 767 Query: 364 gatgtgttggctgcattttacccttgctaatgtcaaatgcatcctggtaagcggtttgcg 423 ||||||||||||||||||| || ||| || || || ||||| || || ||| || Sbjct: 766 gatgtgttggctgcattttggtttttgcaatatcgaacgcctcctgataggcatttttcg 707 Query: 424 agtcatcgacaacggtgttgcgtgcatctcctgtggcaacctcggctaaatacctgtagt 483 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 706 agtcatcaacgacggtgttgcgtgcatctcctgtggcaacctcggctaaatacctgtagt 647 Query: 484 aatcacccttcatcttcaggtaaaacaccttgctctcgggattgctggcttttggaataa 543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 646 aatcacccttcatcttcaggtaaaacaccttgctctcgggattgctggcttttggaataa 587 Query: 544 g 544 | Sbjct: 586 g 586 >14-3-3zeta-RA feature: mRNA loc=2R:join(5161665..5161730,5164889..5165042, 5165350..5165463,5165574..5165700,5166335..5166458, 5166922..5167085, 5168100..5169107);ID=FBan0017870;gene_id=FBgn0004907;gen e_sym=14-3-3zeta;sym=CG17870;scaffold=AE003831;len=1757 Length = 1757 Score = 811 bits (409), Expect = 0.0 Identities = 463/481 (96%) Strand = Plus / Minus Query: 64 tattactgaataatatttgcatagtcaaaaaggaaacatttgcttagttgtttggttagt 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 960 tattactgaataatatttgcatagtcaaaaaggaaacatttgcttagttgtttggttagt 901 Query: 124 tgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcggacgtccagagagtca 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 900 tgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcggacgtccagagagtca 841 Query: 184 ggttgtccctcaacagctgcatgatgagtgtcgagtccttgtaggagtcctcgttcagtg 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 840 ggttgtccctcaacagctgcatgatgagtgtcgagtccttgtaggagtcctcgttcagtg 781 Query: 244 tgtccagctcggctatcgcatcatcgaacgcctgtttagccaattggcaagctttgtctg 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 780 tgtccagctcggctatcgcatcatcgaacgcctgtttagccaattggcaagctttgtctg 721 Query: 304 gtgagttcaaaatctcatagtagaagactgagaagttaagggccagacccaaacggatgg 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 720 gtgagttcaaaatctcatagtagaagactgagaagttaagggccagacccaaacggatgg 661 Query: 364 gatgtgttggctgcattttacccttgctaatgtcaaatgcatcctggtaagcggtttgcg 423 ||||||||||||||||||| || ||| || || || ||||| || || ||| || Sbjct: 660 gatgtgttggctgcattttggtttttgcaatatcgaacgcctcctgataggcatttttcg 601 Query: 424 agtcatcgacaacggtgttgcgtgcatctcctgtggcaacctcggctaaatacctgtagt 483 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 600 agtcatcaacgacggtgttgcgtgcatctcctgtggcaacctcggctaaatacctgtagt 541 Query: 484 aatcacccttcatcttcaggtaaaacaccttgctctcgggattgctggcttttggaataa 543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 540 aatcacccttcatcttcaggtaaaacaccttgctctcgggattgctggcttttggaataa 481 Query: 544 g 544 | Sbjct: 480 g 480 >14-3-3zeta-RF feature: mRNA loc=2R:join(5160321..5160371,5164889..5165042, 5165350..5165463,5165574..5165700,5166335..5166458, 5167267..5167430, 5168100..5169107);ID=FBan0017870;gene_id=FBgn0004907;gen e_sym=14-3-3zeta;sym=CG17870;scaffold=AE003831;len=1742 Length = 1742 Score = 620 bits (313), Expect = e-177 Identities = 439/481 (91%) Strand = Plus / Minus Query: 64 tattactgaataatatttgcatagtcaaaaaggaaacatttgcttagttgtttggttagt 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 945 tattactgaataatatttgcatagtcaaaaaggaaacatttgcttagttgtttggttagt 886 Query: 124 tgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcggacgtccagagagtca 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 885 tgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcggacgtccagagagtca 826 Query: 184 ggttgtccctcaacagctgcatgatgagtgtcgagtccttgtaggagtcctcgttcagtg 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 825 ggttgtccctcaacagctgcatgatgagtgtcgagtccttgtaggagtcctcgttcagtg 766 Query: 244 tgtccagctcggctatcgcatcatcgaacgcctgtttagccaattggcaagctttgtctg 303 |||||||||||||||||||||||||||||||||||||||| || || ||||| | ||| Sbjct: 765 tgtccagctcggctatcgcatcatcgaacgcctgtttagctaagtgacaagccctcgctg 706 Query: 304 gtgagttcaaaatctcatagtagaagactgagaagttaagggccagacccaaacggatgg 363 |||| || | ||| || || |||||||| || ||||| || || ||||| || | ||| | Sbjct: 705 gtgaattgataatttcgtaatagaagacggaaaagttgagagcaagacctaatctgattg 646 Query: 364 gatgtgttggctgcattttacccttgctaatgtcaaatgcatcctggtaagcggtttgcg 423 ||||||| ||||||||||| || ||| || || || ||||| || || ||| || Sbjct: 645 gatgtgtgggctgcattttggtttttgcaatatcgaacgcctcctgataggcttttttcg 586 Query: 424 agtcatcgacaacggtgttgcgtgcatctcctgtggcaacctcggctaaatacctgtagt 483 |||| || || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 585 agtcctcaacgacggtgttgcgtgcatctcctgtggcaacctcggctaaatacctgtagt 526 Query: 484 aatcacccttcatcttcaggtaaaacaccttgctctcgggattgctggcttttggaataa 543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 525 aatcacccttcatcttcaggtaaaacaccttgctctcgggattgctggcttttggaataa 466 Query: 544 g 544 | Sbjct: 465 g 465 >14-3-3zeta-RC feature: mRNA loc=2R:join(5161665..5161730,5164889..5165042, 5165350..5165463,5165574..5165700,5166335..5166458, 5167267..5167430, 5168100..5170320);ID=FBan0017870;gene_id=FBgn0004907;gen e_sym=14-3-3zeta;sym=CG17870;scaffold=AE003831;len=2970 Length = 2970 Score = 620 bits (313), Expect = e-177 Identities = 439/481 (91%) Strand = Plus / Minus Query: 64 tattactgaataatatttgcatagtcaaaaaggaaacatttgcttagttgtttggttagt 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 960 tattactgaataatatttgcatagtcaaaaaggaaacatttgcttagttgtttggttagt 901 Query: 124 tgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcggacgtccagagagtca 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 900 tgtcgccgccctcctgtggctcagcttcgtcgccttgggtgtcggacgtccagagagtca 841 Query: 184 ggttgtccctcaacagctgcatgatgagtgtcgagtccttgtaggagtcctcgttcagtg 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 840 ggttgtccctcaacagctgcatgatgagtgtcgagtccttgtaggagtcctcgttcagtg 781 Query: 244 tgtccagctcggctatcgcatcatcgaacgcctgtttagccaattggcaagctttgtctg 303 |||||||||||||||||||||||||||||||||||||||| || || ||||| | ||| Sbjct: 780 tgtccagctcggctatcgcatcatcgaacgcctgtttagctaagtgacaagccctcgctg 721 Query: 304 gtgagttcaaaatctcatagtagaagactgagaagttaagggccagacccaaacggatgg 363 |||| || | ||| || || |||||||| || ||||| || || ||||| || | ||| | Sbjct: 720 gtgaattgataatttcgtaatagaagacggaaaagttgagagcaagacctaatctgattg 661 Query: 364 gatgtgttggctgcattttacccttgctaatgtcaaatgcatcctggtaagcggtttgcg 423 ||||||| ||||||||||| || ||| || || || ||||| || || ||| || Sbjct: 660 gatgtgtgggctgcattttggtttttgcaatatcgaacgcctcctgataggcttttttcg 601 Query: 424 agtcatcgacaacggtgttgcgtgcatctcctgtggcaacctcggctaaatacctgtagt 483 |||| || || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 600 agtcctcaacgacggtgttgcgtgcatctcctgtggcaacctcggctaaatacctgtagt 541 Query: 484 aatcacccttcatcttcaggtaaaacaccttgctctcgggattgctggcttttggaataa 543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 540 aatcacccttcatcttcaggtaaaacaccttgctctcgggattgctggcttttggaataa 481 Query: 544 g 544 | Sbjct: 480 g 480 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9444 Number of Sequences: 18737 Number of extensions: 9444 Number of successful extensions: 222 Number of sequences better than 1.0e-100: 8 Number of HSP's better than 0.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 206 Number of HSP's gapped (non-prelim): 14 length of query: 544 length of database: 41,270,998 effective HSP length: 17 effective length of query: 527 effective length of database: 40,952,469 effective search space: 21581951163 effective search space used: 21581951163 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI106677|AI106677 GH06752.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH06752 5 similar to mfas: FBan0003359 'signal transduction' located on: 3R 87A8-87A9;: 04/10/2001, mRNA sequence. (764 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value mfas-RP feature: mRNA loc=3R:complement(7810602..7811227,7811289... 797 0.0 mfas-RO feature: mRNA loc=3R:complement(7810602..7811227,7811289... 797 0.0 mfas-RN feature: mRNA loc=3R:complement(7810602..7811227,7811289... 797 0.0 mfas-RM feature: mRNA loc=3R:complement(7810602..7811227,7811289... 797 0.0 mfas-RL feature: mRNA loc=3R:complement(7810602..7811227,7811289... 797 0.0 mfas-RK feature: mRNA loc=3R:complement(7810602..7811227,7811289... 797 0.0 mfas-RJ feature: mRNA loc=3R:complement(7810602..7811227,7811289... 797 0.0 mfas-RI feature: mRNA loc=3R:complement(7810602..7811227,7811289... 797 0.0 mfas-RH feature: mRNA loc=3R:complement(7810602..7811227,7811289... 797 0.0 mfas-RG feature: mRNA loc=3R:complement(7810602..7811227,7811289... 797 0.0 mfas-RF feature: mRNA loc=3R:complement(7810602..7811227,7811289... 797 0.0 mfas-RE feature: mRNA loc=3R:complement(7810602..7811227,7811289... 797 0.0 mfas-RD feature: mRNA loc=3R:complement(7810602..7811227,7811289... 797 0.0 mfas-RC feature: mRNA loc=3R:complement(7810602..7811227,7811289... 797 0.0 mfas-RB feature: mRNA loc=3R:complement(7810602..7811227,7811289... 797 0.0 ninaC-RB feature: mRNA loc=2L:join(7369949..7370096,7370616..737... 718 0.0 ninaC-RA feature: mRNA loc=2L:join(7369967..7370096,7370616..737... 718 0.0 >mfas-RP feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815068,7818482..7818614, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2717 Length = 2717 Score = 797 bits (402), Expect = 0.0 Identities = 402/402 (100%) Strand = Plus / Plus Query: 363 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1679 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 1738 Query: 423 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1739 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 1798 Query: 483 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1799 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 1858 Query: 543 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1859 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 1918 Query: 603 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1919 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 1978 Query: 663 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1979 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 2038 Query: 723 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 764 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2039 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 2080 >mfas-RO feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815065,7817812..7817883, 7818482..7818592, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2764 Length = 2764 Score = 797 bits (402), Expect = 0.0 Identities = 402/402 (100%) Strand = Plus / Plus Query: 363 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1726 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 1785 Query: 423 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1786 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 1845 Query: 483 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1846 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 1905 Query: 543 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1906 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 1965 Query: 603 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1966 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 2025 Query: 663 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2026 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 2085 Query: 723 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 764 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2086 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 2127 >mfas-RN feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815065,7818482..7818592, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2692 Length = 2692 Score = 797 bits (402), Expect = 0.0 Identities = 402/402 (100%) Strand = Plus / Plus Query: 363 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1654 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 1713 Query: 423 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1714 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 1773 Query: 483 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1774 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 1833 Query: 543 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1834 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 1893 Query: 603 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1894 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 1953 Query: 663 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1954 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 2013 Query: 723 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 764 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2014 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 2055 >mfas-RM feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815068,7817812..7817883, 7818482..7818614, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2789 Length = 2789 Score = 797 bits (402), Expect = 0.0 Identities = 402/402 (100%) Strand = Plus / Plus Query: 363 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1751 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 1810 Query: 423 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1811 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 1870 Query: 483 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1871 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 1930 Query: 543 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1931 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 1990 Query: 603 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1991 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 2050 Query: 663 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2051 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 2110 Query: 723 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 764 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2111 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 2152 >mfas-RL feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815068,7818482..7818592, 7818872..7819014);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2771 Length = 2771 Score = 797 bits (402), Expect = 0.0 Identities = 402/402 (100%) Strand = Plus / Plus Query: 363 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1733 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 1792 Query: 423 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1793 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 1852 Query: 483 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1853 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 1912 Query: 543 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1913 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 1972 Query: 603 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1973 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 2032 Query: 663 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2033 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 2092 Query: 723 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 764 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2093 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 2134 >mfas-RK feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815263,7818482..7818614, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2912 Length = 2912 Score = 797 bits (402), Expect = 0.0 Identities = 402/402 (100%) Strand = Plus / Plus Query: 363 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1874 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 1933 Query: 423 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1934 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 1993 Query: 483 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1994 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 2053 Query: 543 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2054 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 2113 Query: 603 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2114 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 2173 Query: 663 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2174 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 2233 Query: 723 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 764 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2234 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 2275 >mfas-RJ feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815263,7817812..7817883, 7818482..7818592, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2962 Length = 2962 Score = 797 bits (402), Expect = 0.0 Identities = 402/402 (100%) Strand = Plus / Plus Query: 363 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1924 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 1983 Query: 423 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1984 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 2043 Query: 483 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2044 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 2103 Query: 543 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2104 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 2163 Query: 603 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2164 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 2223 Query: 663 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2224 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 2283 Query: 723 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 764 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2284 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 2325 >mfas-RI feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815263,7818482..7818592, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2890 Length = 2890 Score = 797 bits (402), Expect = 0.0 Identities = 402/402 (100%) Strand = Plus / Plus Query: 363 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1852 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 1911 Query: 423 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1912 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 1971 Query: 483 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1972 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 2031 Query: 543 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2032 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 2091 Query: 603 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2092 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 2151 Query: 663 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2152 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 2211 Query: 723 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 764 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2212 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 2253 >mfas-RH feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815065,7818482..7818614, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2714 Length = 2714 Score = 797 bits (402), Expect = 0.0 Identities = 402/402 (100%) Strand = Plus / Plus Query: 363 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1676 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 1735 Query: 423 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1736 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 1795 Query: 483 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1796 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 1855 Query: 543 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1856 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 1915 Query: 603 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1916 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 1975 Query: 663 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1976 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 2035 Query: 723 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 764 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2036 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 2077 >mfas-RG feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815068,7817812..7817883, 7818482..7818592, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2767 Length = 2767 Score = 797 bits (402), Expect = 0.0 Identities = 402/402 (100%) Strand = Plus / Plus Query: 363 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1729 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 1788 Query: 423 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1789 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 1848 Query: 483 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1849 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 1908 Query: 543 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1909 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 1968 Query: 603 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1969 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 2028 Query: 663 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2029 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 2088 Query: 723 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 764 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2089 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 2130 >mfas-RF feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815068,7817812..7817883, 7818482..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=3163 Length = 3163 Score = 797 bits (402), Expect = 0.0 Identities = 402/402 (100%) Strand = Plus / Plus Query: 363 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2125 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 2184 Query: 423 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2185 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 2244 Query: 483 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2245 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 2304 Query: 543 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2305 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 2364 Query: 603 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2365 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 2424 Query: 663 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2425 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 2484 Query: 723 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 764 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2485 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 2526 >mfas-RE feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815065,7817812..7817883, 7818482..7818614, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2786 Length = 2786 Score = 797 bits (402), Expect = 0.0 Identities = 402/402 (100%) Strand = Plus / Plus Query: 363 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1748 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 1807 Query: 423 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1808 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 1867 Query: 483 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1868 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 1927 Query: 543 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1928 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 1987 Query: 603 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1988 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 2047 Query: 663 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2048 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 2107 Query: 723 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 764 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2108 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 2149 >mfas-RD feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815068, 7818482..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=3091 Length = 3091 Score = 797 bits (402), Expect = 0.0 Identities = 402/402 (100%) Strand = Plus / Plus Query: 363 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2053 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 2112 Query: 423 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2113 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 2172 Query: 483 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2173 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 2232 Query: 543 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2233 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 2292 Query: 603 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2293 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 2352 Query: 663 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2353 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 2412 Query: 723 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 764 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2413 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 2454 >mfas-RC feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815263,7818482..7818592, 7818872..7819014);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2966 Length = 2966 Score = 797 bits (402), Expect = 0.0 Identities = 402/402 (100%) Strand = Plus / Plus Query: 363 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1928 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 1987 Query: 423 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1988 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 2047 Query: 483 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2048 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 2107 Query: 543 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2108 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 2167 Query: 603 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2168 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 2227 Query: 663 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2228 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 2287 Query: 723 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 764 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2288 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 2329 >mfas-RB feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815068,7818482..7818592, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2695 Length = 2695 Score = 797 bits (402), Expect = 0.0 Identities = 402/402 (100%) Strand = Plus / Plus Query: 363 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1657 aaaagaacctgaccatcttccagcgattgctggaggcctccggctacgatgatcagttcg 1716 Query: 423 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1717 acgatctggacaacgtgaccatctttgcaccaactgacaaggctctgcagaatacggaat 1776 Query: 483 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1777 gggctcgcatgctcaaggaacagccggagctgctgaatcataacttggatctgctggagt 1836 Query: 543 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1837 tccttaactaccatgtggtcaagcccatgatcaagacctgtgacctgtcggagaagtccc 1896 Query: 603 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 662 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1897 tgcccacggttgctggatctagtgtgcgtctgaacctgtactccacccatgctctcttct 1956 Query: 663 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 722 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1957 cggacgtgatgaaccgggcaacggtaaactgtgcccgtttggtgcacttcgatgacgaga 2016 Query: 723 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 764 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2017 gctgcggatccgttctccaccaggtggatcgtgccttggcgc 2058 >ninaC-RB feature: mRNA loc=2L:join(7369949..7370096,7370616..7370919, 7371015..7371878,7371937..7372874,7372943..7373235, 7373295..7373566,7373634..7373920,7373987..7374136, 7374192..7374289,7374353..7374406,7374989..7375176, 7375242..7375657,7375710..7375986, 7376038..7376575);ID=FBan0005125;gene_id=FBgn0002938;gene _sym=ninaC;sym=CG5125;scaffold=AE003617;len=4827 Length = 4827 Score = 718 bits (362), Expect = 0.0 Identities = 362/362 (100%) Strand = Plus / Minus Query: 1 aatttgaaaactttgccgcccttaactcgtttccgtgctagcaaagctcgcatcatggac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3355 aatttgaaaactttgccgcccttaactcgtttccgtgctagcaaagctcgcatcatggac 3296 Query: 61 tgcactttgatgaccttcttcacctgcagctcatacaatctggctaagaactcatcgtta 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3295 tgcactttgatgaccttcttcacctgcagctcatacaatctggctaagaactcatcgtta 3236 Query: 121 tagtagcgcaaaaacaccttggtcttgcccaaggcccagccttccatcttgaggcgcaag 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3235 tagtagcgcaaaaacaccttggtcttgcccaaggcccagccttccatcttgaggcgcaag 3176 Query: 181 aataatagacgacagttatccttggtcatttccacgggctcatcaaagtcaaaggcaagg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3175 aataatagacgacagttatccttggtcatttccacgggctcatcaaagtcaaaggcaagg 3116 Query: 241 aattggtatcgccttaggaactcgtcgaatggcagacgcgagctgaatcccttctggcga 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3115 aattggtatcgccttaggaactcgtcgaatggcagacgcgagctgaatcccttctggcga 3056 Query: 301 gcaataacagtgtccagaactcccaaggccttcatctgttgctggacgacatccgagtgg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3055 gcaataacagtgtccagaactcccaaggccttcatctgttgctggacgacatccgagtgg 2996 Query: 361 aa 362 || Sbjct: 2995 aa 2994 >ninaC-RA feature: mRNA loc=2L:join(7369967..7370096,7370616..7370919, 7371015..7371878,7371937..7372874,7372943..7373235, 7373295..7373566,7373634..7373920,7373987..7374136, 7374192..7374289, 7374353..7375007);ID=FBan0005125;gene_id=FBgn0002938;gene _sym=ninaC;sym=CG5125;scaffold=AE003617;len=3991 Length = 3991 Score = 718 bits (362), Expect = 0.0 Identities = 362/362 (100%) Strand = Plus / Minus Query: 1 aatttgaaaactttgccgcccttaactcgtttccgtgctagcaaagctcgcatcatggac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3337 aatttgaaaactttgccgcccttaactcgtttccgtgctagcaaagctcgcatcatggac 3278 Query: 61 tgcactttgatgaccttcttcacctgcagctcatacaatctggctaagaactcatcgtta 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3277 tgcactttgatgaccttcttcacctgcagctcatacaatctggctaagaactcatcgtta 3218 Query: 121 tagtagcgcaaaaacaccttggtcttgcccaaggcccagccttccatcttgaggcgcaag 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3217 tagtagcgcaaaaacaccttggtcttgcccaaggcccagccttccatcttgaggcgcaag 3158 Query: 181 aataatagacgacagttatccttggtcatttccacgggctcatcaaagtcaaaggcaagg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3157 aataatagacgacagttatccttggtcatttccacgggctcatcaaagtcaaaggcaagg 3098 Query: 241 aattggtatcgccttaggaactcgtcgaatggcagacgcgagctgaatcccttctggcga 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3097 aattggtatcgccttaggaactcgtcgaatggcagacgcgagctgaatcccttctggcga 3038 Query: 301 gcaataacagtgtccagaactcccaaggccttcatctgttgctggacgacatccgagtgg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3037 gcaataacagtgtccagaactcccaaggccttcatctgttgctggacgacatccgagtgg 2978 Query: 361 aa 362 || Sbjct: 2977 aa 2976 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 19,287 Number of Sequences: 18737 Number of extensions: 19287 Number of successful extensions: 497 Number of sequences better than 1.0e-100: 17 Number of HSP's better than 0.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 480 Number of HSP's gapped (non-prelim): 17 length of query: 764 length of database: 41,270,998 effective HSP length: 17 effective length of query: 747 effective length of database: 40,952,469 effective search space: 30591494343 effective search space used: 30591494343 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI106848|AI106848 GH06087.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH06087 5 similar to CG9510: FBan0009510 'enzyme' located on: 2L 29F6-29F6;: 04/10/2001, mRNA sequence. (567 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG33085-RD feature: mRNA loc=2L:complement(8932011..8932435,8932... 1124 0.0 CG33085-RC feature: mRNA loc=2L:complement(8932011..8932428,8932... 1124 0.0 CG33085-RA feature: mRNA loc=2L:complement(8932011..8932428,8932... 1124 0.0 >CG33085-RD feature: mRNA loc=2L:complement(8932011..8932435,8932486..8932886, 8933229..8934017);ID=FBan0033085;gene_id=FBgn0053085;gen e_sym=CG33085;sym=CG33085;scaffold=AE003623;len=1615 Length = 1615 Score = 1124 bits (567), Expect = 0.0 Identities = 567/567 (100%) Strand = Plus / Plus Query: 1 atgacccagatccccgagagctgttataagatgtggggtggtaggttcaccgaggggccg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 63 atgacccagatccccgagagctgttataagatgtggggtggtaggttcaccgaggggccg 122 Query: 61 catgaggctctccattcgctgaataacagcctgccctacgattctcgcctctatgcggat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 123 catgaggctctccattcgctgaataacagcctgccctacgattctcgcctctatgcggat 182 Query: 121 gatttggacgccagcaaggcgtatgcagaggcactccatcgagctggtctcatcaactca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 183 gatttggacgccagcaaggcgtatgcagaggcactccatcgagctggtctcatcaactca 242 Query: 181 gccgaggcggataagttggtaaagaatctggagctgttgcgattcgattggatcgaggga 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 243 gccgaggcggataagttggtaaagaatctggagctgttgcgattcgattggatcgaggga 302 Query: 241 actgtgaagattctacccggtgacgaggatgtgcacacggtgaacgagcgattgctggtg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 303 actgtgaagattctacccggtgacgaggatgtgcacacggtgaacgagcgattgctggtg 362 Query: 301 gagattaccggcgaactgggccagcggcttcacacgggcagaagcagaaatgaccaggtg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 363 gagattaccggcgaactgggccagcggcttcacacgggcagaagcagaaatgaccaggtg 422 Query: 361 gtcacggacatgaagctatggcttcgcaaggccattcgtgagaccttgggccggctgagt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 423 gtcacggacatgaagctatggcttcgcaaggccattcgtgagaccttgggccggctgagt 482 Query: 421 ggcatcattgaaactgccaccaggcaggcggaactccacctgggcgtcctcatgccagga 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 483 ggcatcattgaaactgccaccaggcaggcggaactccacctgggcgtcctcatgccagga 542 Query: 481 tacacgcatctgcagcgggcccagaccgttcagttctcccactggctgctctcgcacgcg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 543 tacacgcatctgcagcgggcccagaccgttcagttctcccactggctgctctcgcacgcg 602 Query: 541 tttgcattaagggaagatggccagcgg 567 ||||||||||||||||||||||||||| Sbjct: 603 tttgcattaagggaagatggccagcgg 629 >CG33085-RC feature: mRNA loc=2L:complement(8932011..8932428,8932486..8932886, 8933229..8934683,8934740..8934886,8935058..8935302, 8935360..8935495);ID=FBan0033085;gene_id=FBgn0053085;gene _sym=CG33085;sym=CG33085;scaffold=AE003623;len=2802 Length = 2802 Score = 1124 bits (567), Expect = 0.0 Identities = 567/567 (100%) Strand = Plus / Plus Query: 1 atgacccagatccccgagagctgttataagatgtggggtggtaggttcaccgaggggccg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1257 atgacccagatccccgagagctgttataagatgtggggtggtaggttcaccgaggggccg 1316 Query: 61 catgaggctctccattcgctgaataacagcctgccctacgattctcgcctctatgcggat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1317 catgaggctctccattcgctgaataacagcctgccctacgattctcgcctctatgcggat 1376 Query: 121 gatttggacgccagcaaggcgtatgcagaggcactccatcgagctggtctcatcaactca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1377 gatttggacgccagcaaggcgtatgcagaggcactccatcgagctggtctcatcaactca 1436 Query: 181 gccgaggcggataagttggtaaagaatctggagctgttgcgattcgattggatcgaggga 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1437 gccgaggcggataagttggtaaagaatctggagctgttgcgattcgattggatcgaggga 1496 Query: 241 actgtgaagattctacccggtgacgaggatgtgcacacggtgaacgagcgattgctggtg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1497 actgtgaagattctacccggtgacgaggatgtgcacacggtgaacgagcgattgctggtg 1556 Query: 301 gagattaccggcgaactgggccagcggcttcacacgggcagaagcagaaatgaccaggtg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1557 gagattaccggcgaactgggccagcggcttcacacgggcagaagcagaaatgaccaggtg 1616 Query: 361 gtcacggacatgaagctatggcttcgcaaggccattcgtgagaccttgggccggctgagt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1617 gtcacggacatgaagctatggcttcgcaaggccattcgtgagaccttgggccggctgagt 1676 Query: 421 ggcatcattgaaactgccaccaggcaggcggaactccacctgggcgtcctcatgccagga 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1677 ggcatcattgaaactgccaccaggcaggcggaactccacctgggcgtcctcatgccagga 1736 Query: 481 tacacgcatctgcagcgggcccagaccgttcagttctcccactggctgctctcgcacgcg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1737 tacacgcatctgcagcgggcccagaccgttcagttctcccactggctgctctcgcacgcg 1796 Query: 541 tttgcattaagggaagatggccagcgg 567 ||||||||||||||||||||||||||| Sbjct: 1797 tttgcattaagggaagatggccagcgg 1823 >CG33085-RA feature: mRNA loc=2L:complement(8932011..8932428,8932486..8932886, 8933229..8934683,8934740..8934886,8935058..8935302, 8935360..8935495);ID=FBan0033085;gene_id=FBgn0053085;gene _sym=CG33085;sym=CG33085;scaffold=AE003623;len=2802 Length = 2802 Score = 1124 bits (567), Expect = 0.0 Identities = 567/567 (100%) Strand = Plus / Plus Query: 1 atgacccagatccccgagagctgttataagatgtggggtggtaggttcaccgaggggccg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1257 atgacccagatccccgagagctgttataagatgtggggtggtaggttcaccgaggggccg 1316 Query: 61 catgaggctctccattcgctgaataacagcctgccctacgattctcgcctctatgcggat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1317 catgaggctctccattcgctgaataacagcctgccctacgattctcgcctctatgcggat 1376 Query: 121 gatttggacgccagcaaggcgtatgcagaggcactccatcgagctggtctcatcaactca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1377 gatttggacgccagcaaggcgtatgcagaggcactccatcgagctggtctcatcaactca 1436 Query: 181 gccgaggcggataagttggtaaagaatctggagctgttgcgattcgattggatcgaggga 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1437 gccgaggcggataagttggtaaagaatctggagctgttgcgattcgattggatcgaggga 1496 Query: 241 actgtgaagattctacccggtgacgaggatgtgcacacggtgaacgagcgattgctggtg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1497 actgtgaagattctacccggtgacgaggatgtgcacacggtgaacgagcgattgctggtg 1556 Query: 301 gagattaccggcgaactgggccagcggcttcacacgggcagaagcagaaatgaccaggtg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1557 gagattaccggcgaactgggccagcggcttcacacgggcagaagcagaaatgaccaggtg 1616 Query: 361 gtcacggacatgaagctatggcttcgcaaggccattcgtgagaccttgggccggctgagt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1617 gtcacggacatgaagctatggcttcgcaaggccattcgtgagaccttgggccggctgagt 1676 Query: 421 ggcatcattgaaactgccaccaggcaggcggaactccacctgggcgtcctcatgccagga 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1677 ggcatcattgaaactgccaccaggcaggcggaactccacctgggcgtcctcatgccagga 1736 Query: 481 tacacgcatctgcagcgggcccagaccgttcagttctcccactggctgctctcgcacgcg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1737 tacacgcatctgcagcgggcccagaccgttcagttctcccactggctgctctcgcacgcg 1796 Query: 541 tttgcattaagggaagatggccagcgg 567 ||||||||||||||||||||||||||| Sbjct: 1797 tttgcattaagggaagatggccagcgg 1823 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,917 Number of Sequences: 18737 Number of extensions: 13917 Number of successful extensions: 345 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 342 Number of HSP's gapped (non-prelim): 3 length of query: 567 length of database: 41,270,998 effective HSP length: 17 effective length of query: 550 effective length of database: 40,952,469 effective search space: 22523857950 effective search space used: 22523857950 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI106854|AI106854 GH06096.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH06096 5prime, mRNA sequence. (620 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value BEST:GH09435-RA feature: mRNA loc=2L:join(15982656..15983099,159... 1104 0.0 >BEST:GH09435-RA feature: mRNA loc=2L:join(15982656..15983099, 15983172..15983551);ID=FBan0013245;gene_id=FBgn0045827;g ene_sym=BEST:GH09435;sym=CG13245;scaffold=AE003649;len=8 24 Length = 824 Score = 1104 bits (557), Expect = 0.0 Identities = 557/557 (100%) Strand = Plus / Plus Query: 64 caatagtaaaaagagcacacgtttcggaaaacctaaaccaagtcaagatgtgtggtggct 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 76 caatagtaaaaagagcacacgtttcggaaaacctaaaccaagtcaagatgtgtggtggct 135 Query: 124 gggcctgtgcctcctacaatatcgcctgctgcaatccccgcctgtcgacactgcgattct 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 136 gggcctgtgcctcctacaatatcgcctgctgcaatccccgcctgtcgacactgcgattct 195 Query: 184 ctggccgctgtttcgcacccacgccctgcggtccatgtgatgactgttccatttacggcg 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 196 ctggccgctgtttcgcacccacgccctgcggtccatgtgatgactgttccatttacggcg 255 Query: 244 gttgctgcggtggctgctgcgggtgctaggtgatctctgacctggagtagccacagagtt 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 256 gttgctgcggtggctgctgcgggtgctaggtgatctctgacctggagtagccacagagtt 315 Query: 304 gggtggagagtccggaattcaactatcttgaagtaggccttgggaactgttggctgtcag 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 316 gggtggagagtccggaattcaactatcttgaagtaggccttgggaactgttggctgtcag 375 Query: 364 ccatgaaacaaatatcattcagtcccagtccagtccttgtcggaacaacaaccttaaacg 423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 376 ccatgaaacaaatatcattcagtcccagtccagtccttgtcggaacaacaaccttaaacg 435 Query: 424 ttcaccgggttcccacatccgtttcctaaccatgtgtggtggctgggcttgtgcctcctt 483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 436 ttcaccgggttcccacatccgtttcctaaccatgtgtggtggctgggcttgtgcctcctt 495 Query: 484 tgacctggcctgcaataatcctcccttgtcaacactgcgtttcaccggtcgggactttat 543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 496 tgacctggcctgcaataatcctcccttgtcaacactgcgtttcaccggtcgggactttat 555 Query: 544 acccacgccctgcggtccttgcgataagtgttatgttctagatactagccgcaagaagaa 603 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 556 acccacgccctgcggtccttgcgataagtgttatgttctagatactagccgcaagaagaa 615 Query: 604 caccaacaactgctatg 620 ||||||||||||||||| Sbjct: 616 caccaacaactgctatg 632 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,999 Number of Sequences: 18737 Number of extensions: 12999 Number of successful extensions: 361 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 355 Number of HSP's gapped (non-prelim): 2 length of query: 620 length of database: 41,270,998 effective HSP length: 17 effective length of query: 603 effective length of database: 40,952,469 effective search space: 24694338807 effective search space used: 24694338807 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI107052|AI107052 GH06341.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH06341 5 similar to CG5390: FBan0005390 'endopeptidase' located on: 2L 31D5-31D6;: 04/10/2001, mRNA sequence. (657 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG5390-RA feature: mRNA loc=2L:complement(10296472..10297178,102... 1302 0.0 >CG5390-RA feature: mRNA loc=2L:complement(10296472..10297178,10297236..10297491, 10297558..10297918, 10298921..10299003);ID=FBan0005390;gene_id=FBgn0032213;g ene_sym=CG5390;sym=CG5390;scaffold=AE003628;len=1407 Length = 1407 Score = 1302 bits (657), Expect = 0.0 Identities = 657/657 (100%) Strand = Plus / Plus Query: 1 ctcagcgaacgttgcgctactttgataaattaagaatatgatattactaaattgcctagt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 51 ctcagcgaacgttgcgctactttgataaattaagaatatgatattactaaattgcctagt 110 Query: 61 aatatgcctgtgcatattttcctgtggtgcccaggactcttccttggacaaattgatatc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 111 aatatgcctgtgcatattttcctgtggtgcccaggactcttccttggacaaattgatatc 170 Query: 121 ggacatctttaaaacggacgaaacacccaaaccatcatcccctcccccgccagtggtgaa 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 171 ggacatctttaaaacggacgaaacacccaaaccatcatcccctcccccgccagtggtgaa 230 Query: 181 ccccaaggattcgtccggtagcacgggatccgaaaacggaggatcgagttcaacgcagta 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 231 ccccaaggattcgtccggtagcacgggatccgaaaacggaggatcgagttcaacgcagta 290 Query: 241 ccagtcctgtggcgatcaaaaggagtgtgttcctcgctggttgtgcgccaatgatacgat 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 291 ccagtcctgtggcgatcaaaaggagtgtgttcctcgctggttgtgcgccaatgatacgat 350 Query: 301 taacaccagtggcgatggtatcattgacattcgacttggtacggacgccgaatgcaagaa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 351 taacaccagtggcgatggtatcattgacattcgacttggtacggacgccgaatgcaagaa 410 Query: 361 ctatttggatctttgctgtgatctgcccaacaagagaaaagatccgattttcgagtttaa 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 411 ctatttggatctttgctgtgatctgcccaacaagagaaaagatccgattttcgagtttaa 470 Query: 421 gcctgatcatcccgagggctgcggttaccaaaatcccaacggcgttggctttaagatcac 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 471 gcctgatcatcccgagggctgcggttaccaaaatcccaacggcgttggctttaagatcac 530 Query: 481 tggagctgtcaaccaggaggccgaattcggcgaattcccctggatgctggccattctccg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 531 tggagctgtcaaccaggaggccgaattcggcgaattcccctggatgctggccattctccg 590 Query: 541 ggaagaaggcaaccttaacctgtacgaatgtggaggagcattgatagctcccaatgtggt 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 591 ggaagaaggcaaccttaacctgtacgaatgtggaggagcattgatagctcccaatgtggt 650 Query: 601 tctgaccgcggcgcattgcgttcacaacaaacagcccagtagcattgttgtgagagc 657 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 651 tctgaccgcggcgcattgcgttcacaacaaacagcccagtagcattgttgtgagagc 707 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,779 Number of Sequences: 18737 Number of extensions: 13779 Number of successful extensions: 269 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 268 Number of HSP's gapped (non-prelim): 1 length of query: 657 length of database: 41,270,998 effective HSP length: 17 effective length of query: 640 effective length of database: 40,952,469 effective search space: 26209580160 effective search space used: 26209580160 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI107438|AI107438 GH05123.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH05123 5 similar to CG8037: FBan0008037 'DNA-directed RNA polymerase III' located on: 3L 76D6-76D6;: 04/10/2001, mRNA sequence. (629 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 17,082 Number of Sequences: 18737 Number of extensions: 17082 Number of successful extensions: 816 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 816 Number of HSP's gapped (non-prelim): 0 length of query: 629 length of database: 41,270,998 effective HSP length: 17 effective length of query: 612 effective length of database: 40,952,469 effective search space: 25062911028 effective search space used: 25062911028 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI107527|AI107527 GH05253.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH05253 5prime, mRNA sequence. (652 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG30156-RA feature: mRNA loc=2R:complement(2042348..2042587,2042... 1287 0.0 >CG30156-RA feature: mRNA loc=2R:complement(2042348..2042587,2042645..2042811, 2042871..2043888);ID=FBan0030156;gene_id=FBgn0050156;gen e_sym=CG30156;sym=CG30156;scaffold=AE003790;len=1425 Length = 1425 Score = 1287 bits (649), Expect = 0.0 Identities = 651/652 (99%) Strand = Plus / Plus Query: 1 ttgactggcgaaagtcaatttgtatttaagtttgcagctacatatacatatacagtcaac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 17 ttgactggcgaaagtcaatttgtatttaagtttgcagctacatatacatatacagtcaac 76 Query: 61 ttagttcgaaactatttcggctacctctaatatacatacaaaagcactttgttaaattca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77 ttagttcgaaactatttcggctacctctaatatacatacaaaagcactttgttaaattca 136 Query: 121 ccaactcggtggattgtcccagaacaacaaaccaaaatttaaaatttgcaaacgaacaga 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 137 ccaactcggtggattgtcccagaacaacaaaccaaaatttaaaatttgcaaacgaacaga 196 Query: 181 gaaaaacgaatccttttttgtcttctcacgctgctgggaaggagaagaaagtaaccaaga 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 197 gaaaaacgaatccttttttgtcttctcacgctgctgggaaggagaagaaagtaaccaaga 256 Query: 241 actggaggacgacgacttcacaatgggaatcctgcaggcgaggaggcatcactgcgtcga 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 257 actggaggacgacgacttcacaatgggaatcctgcaggcgaggaggcatcactgcgtcga 316 Query: 301 caaggtggtgagtgacctgtgcctgggacactacgagcacgctctgaggcagatcaacga 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 317 caaggtggtgagtgacctgtgcctgggacactacgagcacgctctgaggcagatcaacga 376 Query: 361 ggatctggaaggcttacagaaccacgatgagatcatggcgctgctggagctaaagaatat 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 377 ggatctggaaggcttacagaaccacgatgagatcatggcgctgctggagctaaagaatat 436 Query: 421 cattttgagactgaggctgaagggcgaggcccagcggaccataggcccaactcgcaaatc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 437 cattttgagactgaggctgaagggcgaggcccagcggaccataggcccaactcgcaaatc 496 Query: 481 tgacgccctgccccacaagttcacactcgagatgctggacgtggtgcagaaggtcctgcg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 497 tgacgccctgccccacaagttcacactcgagatgctggacgtggtgcagaaggtcctgcg 556 Query: 541 gtgccgcaatcactacgaggtgctgcgcatctctcatcatgccacctactccgaggtgaa 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 557 gtgccgcaatcactacgaggtgctgcgcatctctcatcatgccacctactccgaggtgaa 616 Query: 601 gcgggcctaccacaagctggccctgcgcctncatccggacaagaacaaatct 652 |||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 617 gcgggcctaccacaagctggccctgcgcctccatccggacaagaacaaatct 668 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 20,295 Number of Sequences: 18737 Number of extensions: 20295 Number of successful extensions: 684 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 683 Number of HSP's gapped (non-prelim): 1 length of query: 652 length of database: 41,270,998 effective HSP length: 17 effective length of query: 635 effective length of database: 40,952,469 effective search space: 26004817815 effective search space used: 26004817815 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI107652|AI107652 GH05452.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH05452 5prime, mRNA sequence. (682 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG5762-RA feature: mRNA loc=3R:complement(20177084..20177458,201... 1140 0.0 >CG5762-RA feature: mRNA loc=3R:complement(20177084..20177458, 20177517..20178068);ID=FBan0005762;gene_id=FBgn0039190;g ene_sym=CG5762;sym=CG5762;scaffold=AE003747;len=927 Length = 927 Score = 1140 bits (575), Expect = 0.0 Identities = 584/587 (99%) Strand = Plus / Plus Query: 93 tatcttccgagaatggttaacatccacggtggcactcggatgatggtgaaccgttgcatc 152 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 127 tatcttccgagaatggttaacatccacggtggcactcggatgatggtgaaccgttgcatc 186 Query: 153 gagctcctccgtgcgcggatcgaatgcgcctcaacgcgtcacattgccaggcgttcccag 212 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 187 gagctcctccgtgcgcggatcgaatgcgcctcaacgcgtcacattgccaggcgttcccag 246 Query: 213 cggcccagagtgggcagccaatacctgccagacgatcagatactcagggagcgggagaaa 272 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 247 cggcccagagtgggcagccaatacctgccagacgatcagatactcagggagcgggagaaa 306 Query: 273 gcggatgtgtacaagaagaacaagcgacgctccatgtgggagcaggacgagggccacgga 332 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 307 gcggatgtgtacaagaagaacaagcgacgctccatgtgggagcaggacgagggccacgga 366 Query: 333 cgcatctcggtcggggacgatcaggaacgcttcgataacgagcagtaccatccgcgcgaa 392 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 367 cgcatctcggtcggggacgatcaggaacgcttcgataacgagcagtaccatccgcgcgaa 426 Query: 393 ctggagaagcgcaagtactagtgcacctgggttaatttcccggacagtgtggcgaccaaa 452 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 427 ctggagaagcgcaagtacgagtgcacctgggttaatttcccggacagtgtggcgaccaaa 486 Query: 453 cgaaatcgtagacgggactttctggagtcgatggaaactgaggctcctcgacgccgccga 512 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 487 cgaaatcgtagacgggactttctggagtcgatggaaactgaggctcctcgacgccgccga 546 Query: 513 gcccaggaagaaagaccgagtacggcaaagccatgtgacgacgaggcccgtgcctttatc 572 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 547 gcccaggaagaaagaccgagtacggcaaagccatgtgacgacgaggcccgtgcctttatc 606 Query: 573 aaccaatgggacaccaatgcggcgatgatccaacgcaacaaatttgctcgtgccaccgat 632 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 607 aaccaatgggacaccaatgcggcgatgatccaacgcaacaaatttgctcgtgccaccgat 666 Query: 633 agctgtccaccacccattgtatctctccgggtgtcaaacccctacag 679 |||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct: 667 agctgtccaccacccattgtatctctccggttgtcaaacgcctacag 713 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,587 Number of Sequences: 18737 Number of extensions: 14587 Number of successful extensions: 322 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 320 Number of HSP's gapped (non-prelim): 2 length of query: 682 length of database: 41,270,998 effective HSP length: 17 effective length of query: 665 effective length of database: 40,952,469 effective search space: 27233391885 effective search space used: 27233391885 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI108133|AI108133 GH06882.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH06882 5prime, mRNA sequence. (585 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG3775-RA feature: mRNA loc=X:12532370..12534896;ID=FBan0003775;... 1084 0.0 >CG3775-RA feature: mRNA loc=X:12532370..12534896;ID=FBan0003775;gene_id=FBgn0030 425;gene_sym=CG3775;sym=CG3775;scaffold=AE003490;len=252 7 Length = 2527 Score = 1084 bits (547), Expect = 0.0 Identities = 562/567 (99%) Strand = Plus / Plus Query: 19 atgaagccaccactatcatcgatcacccggctggtagtgatcctcggcgtgatgctgctg 78 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atgaagccaccactatcatcgatcacccggctggtagtgatcctcggcgtgatgctgctg 60 Query: 79 aagctggcggcagcccaggattgtcagcagcaattggacaacgacactgatgcggaggtg 138 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 aagctggcggcagcccaggattgtcagcagcaattggacaacgacactgatgcggaggtg 120 Query: 139 aagccgtgcgagaattttcatcagtatgcctgcggaaattggtattcgaacacttcgcag 198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aagccgtgcgagaattttcatcagtatgcctgcggaaattggtattcgaacacttcgcag 180 Query: 199 cgaattctcggtgcccacgatatgcgatccaagtgggtggcaaatctgaagcttcagctt 258 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 cgaattctcggtgcccacgatatgcgatccaagtgggtggcaaatctgaagcttcagctt 240 Query: 259 atccgatatctagaggaatcatcatccaccgatagcttcagtgccaataccttcgtcacc 318 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 241 atccgatatctagaggaatcatcatccaccgatagcttcagtgccaatacctccgtcacc 300 Query: 319 acttcaaccggccagttgggcacattatacagatgctgcttgttgagtggccagtcgata 378 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 acttcaaccgcccagttgggcacattatacagatgctgcttgttgagtggccagtcgata 360 Query: 379 agaacctacaccgatgccctgtcacgaagtggtgccaacttccctctgctggccaaccat 438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 agaacctacaccgatgccctgtcacgaagtggtgccaacttccctctgctggccaaccat 420 Query: 439 actggtggatccttcgattgggttctggccaatgtccgcctgcgtacgtacggagctcag 498 |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| Sbjct: 421 actggtggatccttcgattgggttctggccaatgccgccctgcgtacgtacggagctcag 480 Query: 499 ggtctttggcgactcttggtcaaggacaattggcagtcggcggatcagaggatcttctac 558 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 ggtctttggcgactcttggtcaaggacaattggcagtcggcggatcagaggatcttctac 540 Query: 559 atgctgccacccaagttcgatctactg 585 ||||||||||||||||||||||||||| Sbjct: 541 atgctgccacccaagttcgatctactg 567 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,410 Number of Sequences: 18737 Number of extensions: 15410 Number of successful extensions: 330 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 329 Number of HSP's gapped (non-prelim): 1 length of query: 585 length of database: 41,270,998 effective HSP length: 17 effective length of query: 568 effective length of database: 40,952,469 effective search space: 23261002392 effective search space used: 23261002392 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI109245|AI109245 GH08376.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH08376 5prime, mRNA sequence. (589 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG7291-RA feature: mRNA loc=2L:1989956..1990614;ID=FBan0007291;g... 1168 0.0 >CG7291-RA feature: mRNA loc=2L:1989956..1990614;ID=FBan0007291;gene_id=FBgn00313 81;gene_sym=CG7291;sym=CG7291;scaffold=AE003584;len=659 Length = 659 Score = 1168 bits (589), Expect = 0.0 Identities = 589/589 (100%) Strand = Plus / Plus Query: 1 tgaagaggcagaaagaggcgagagccagcggaaaagccacccgatacgtttaccttgtaa 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 20 tgaagaggcagaaagaggcgagagccagcggaaaagccacccgatacgtttaccttgtaa 79 Query: 61 ttcaattaagtggaagaaaatgctgaggtacgcggtaattgcctgtgctgcactggtggt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 80 ttcaattaagtggaagaaaatgctgaggtacgcggtaattgcctgtgctgcactggtggt 139 Query: 121 cttcgccggagccctcgagttcagcgattgcggatcgaagacgggcaagttcacccgggt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 140 cttcgccggagccctcgagttcagcgattgcggatcgaagacgggcaagttcacccgggt 199 Query: 181 ggccatcgagggctgcgacaccaccaaggcggagtgcatcctcaagaggaacaccacggt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 200 ggccatcgagggctgcgacaccaccaaggcggagtgcatcctcaagaggaacaccacggt 259 Query: 241 cagcttctccatcgacttcgccctggccgaggaggcaacggcggtgaagacagtcgtcca 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 260 cagcttctccatcgacttcgccctggccgaggaggcaacggcggtgaagacagtcgtcca 319 Query: 301 cggcaaggtcctgggcatcgagatgcccttcccgctggccaatcccgatgcctgtgtgga 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 320 cggcaaggtcctgggcatcgagatgcccttcccgctggccaatcccgatgcctgtgtgga 379 Query: 361 cagtggtctgaagtgcccgttggagaaggacgagtcgtaccgctacacggccaccctgcc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 380 cagtggtctgaagtgcccgttggagaaggacgagtcgtaccgctacacggccaccctgcc 439 Query: 421 ggtgctgagatcctaccccaaagtgtccgtgctggtcaagtgggagctgcaggatcagga 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 440 ggtgctgagatcctaccccaaagtgtccgtgctggtcaagtgggagctgcaggatcagga 499 Query: 481 cggagcggacatcatctgcgtcgagattcccgctaaaattcagtaggcagtcaccctcta 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 500 cggagcggacatcatctgcgtcgagattcccgctaaaattcagtaggcagtcaccctcta 559 Query: 541 aattaacctcgaaatactggggagagcgcactgagcactcctgattttc 589 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 560 aattaacctcgaaatactggggagagcgcactgagcactcctgattttc 608 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,647 Number of Sequences: 18737 Number of extensions: 15647 Number of successful extensions: 456 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 455 Number of HSP's gapped (non-prelim): 1 length of query: 589 length of database: 41,270,998 effective HSP length: 17 effective length of query: 572 effective length of database: 40,952,469 effective search space: 23424812268 effective search space used: 23424812268 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI109538|AI109538 GH08762.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH08762 5 similar to Z31368: D.melanogaster (MS) DNA for gypsy 7K retrotransposon, mRNA sequence. (664 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,688 Number of Sequences: 18737 Number of extensions: 10688 Number of successful extensions: 267 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 267 Number of HSP's gapped (non-prelim): 0 length of query: 664 length of database: 41,270,998 effective HSP length: 17 effective length of query: 647 effective length of database: 40,952,469 effective search space: 26496247443 effective search space used: 26496247443 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI109752|AI109752 GH09055.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH09055 5 similar to CG17524: FBan0017524 'enzyme' located on: 2R 55C9-55C9;: 04/10/2001, mRNA sequence. (750 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG17524-RA feature: mRNA loc=2R:13464437..13465189;ID=FBan001752... 1455 0.0 >CG17524-RA feature: mRNA loc=2R:13464437..13465189;ID=FBan0017524;gene_id=FBgn003 4337;gene_sym=CG17524;sym=CG17524;scaffold=AE003799;len= 753 Length = 753 Score = 1455 bits (734), Expect = 0.0 Identities = 734/734 (100%) Strand = Plus / Plus Query: 4 cgccttacagcacactacagacatgggaaaacttacgctttacggaatcgacggtagtcc 63 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 19 cgccttacagcacactacagacatgggaaaacttacgctttacggaatcgacggtagtcc 78 Query: 64 tccggtccgttcggtgctgctcacgctgagagccttgaatttggacttcgactacaagat 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 79 tccggtccgttcggtgctgctcacgctgagagccttgaatttggacttcgactacaagat 138 Query: 124 cgtcaatctgatggagaaggagcacctgaagccagagttcctcaagatcaatcccctgca 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 139 cgtcaatctgatggagaaggagcacctgaagccagagttcctcaagatcaatcccctgca 198 Query: 184 caccgtgcccgctctggatgataatggtttctatttggccgacagccatgctattaactc 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 199 caccgtgcccgctctggatgataatggtttctatttggccgacagccatgctattaactc 258 Query: 244 ctacctggtgagcaagtacggccggaatgattctctataccccaaggatctgaagaagcg 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 259 ctacctggtgagcaagtacggccggaatgattctctataccccaaggatctgaagaagcg 318 Query: 304 agccattgtcgatcagcgtctgcactacgactccagcgtggtgacctcgacaggaagggc 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 319 agccattgtcgatcagcgtctgcactacgactccagcgtggtgacctcgacaggaagggc 378 Query: 364 tatcacctttccgctcttctgggagaacaagacggagattccacaggcgaggatcgatgc 423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 379 tatcacctttccgctcttctgggagaacaagacggagattccacaggcgaggatcgatgc 438 Query: 424 cctggagggtgtctacaagtccctcaatctgtttctggagaatggcaattatctggccgg 483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 439 cctggagggtgtctacaagtccctcaatctgtttctggagaatggcaattatctggccgg 498 Query: 484 cgacaacctgaccattgccgatttccacgtcatcgccggcttgacaggatttttcgtgtt 543 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 499 cgacaacctgaccattgccgatttccacgtcatcgccggcttgacaggatttttcgtgtt 558 Query: 544 cctgcctgtagatgccactaagtatcccgagctggctgcctggatcaagcgcatcaagga 603 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 559 cctgcctgtagatgccactaagtatcccgagctggctgcctggatcaagcgcatcaagga 618 Query: 604 gctgccatactacgaggaagcgaatggctctcgtgctgcccaaatcatcgagttcatcaa 663 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 619 gctgccatactacgaggaagcgaatggctctcgtgctgcccaaatcatcgagttcatcaa 678 Query: 664 gagcaaaaagttcactattgtttaaggcattttagtatagacaaaaataaataagaacaa 723 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 679 gagcaaaaagttcactattgtttaaggcattttagtatagacaaaaataaataagaacaa 738 Query: 724 caattatcataacg 737 |||||||||||||| Sbjct: 739 caattatcataacg 752 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 19,003 Number of Sequences: 18737 Number of extensions: 19003 Number of successful extensions: 483 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 482 Number of HSP's gapped (non-prelim): 1 length of query: 750 length of database: 41,270,998 effective HSP length: 17 effective length of query: 733 effective length of database: 40,952,469 effective search space: 30018159777 effective search space used: 30018159777 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI109965|AI109965 GH09377.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH09377 5 similar to CG3239: FBan0003239 'endopeptidase' located on: X 5A1-5A1;: 04/10/2001, mRNA sequence. (839 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG3239-RB feature: mRNA loc=X:complement(5234654..5236386,523660... 1657 0.0 CG3239-RA feature: mRNA loc=X:complement(5234654..5236386,523645... 1657 0.0 >CG3239-RB feature: mRNA loc=X:complement(5234654..5236386, 5236606..5236663);ID=FBan0003239;gene_id=FBgn0029769;gene _sym=CG3239;sym=CG3239;scaffold=AE003434;len=1791 Length = 1791 Score = 1657 bits (836), Expect = 0.0 Identities = 838/839 (99%) Strand = Plus / Plus Query: 1 cagtccagacagatcctcagtcatcctgctgcatggttggtagagaagaatcatcccagg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 678 cagtccagacagatcctcagtcatcctgctgcatggttggtagagaagaatcatcccagg 737 Query: 61 ctcaaggaggagccagtgctgcaggacattttcgcggagctgaagcagcgctttggccaa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 738 ctcaaggaggagccagtgctgcaggacattttcgcggagctgaagcagcgctttggccaa 797 Query: 121 aagcttctggcgaacaggaataactttactcgcagcacacagcactttcttttgggcaaa 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 798 aagcttctggcgaacaggaataactttactcgcagcacacagcactttcttttgggcaaa 857 Query: 181 ttgaaaaggatgcggctgcgattgagcatcctgcccagaaattcttcggcccaatccatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 858 ttgaaaaggatgcggctgcgattgagcatcctgcccagaaattcttcggcccaatccatg 917 Query: 241 gtgcgacgcatcgaaaggcactacagggatgttcacatgaatgctagcgattattttgga 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 918 gtgcgacgcatcgaaaggcactacagggatgttcacatgaatgctagcgattattttgga 977 Query: 301 aatctacatatcggccttaatcactccagatcccacaagaagtacgcccaactatgggcc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 978 aatctacatatcggccttaatcactccagatcccacaagaagtacgcccaactatgggcc 1037 Query: 361 atagtcttcggccgccagttgattccaagccgaatatccaagagcgatttgtatcccacc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1038 atagtcttcggccgccagttgattccaagccgaatatccaagagcgatttgtatcccacc 1097 Query: 421 caagtgcgtgggtatggcacctatgcctctgcgttctacatagtcaaacagaatatgcta 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1098 caagtgcgtgggtatggcacctatgcctctgcgttctacatagtcaaacagaatatgcta 1157 Query: 481 attgtgccactatcgctcctggaaccgccgttctacacacatggccagccgtcgatactt 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1158 attgtgccactatcgctcctggaaccgccgttctacacacatggccagccgtcgatactt 1217 Query: 541 acctacagtgcactgggcttcatcctgggccacgagctctcgcacggctttgattccgag 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1218 acctacagtgcactgggcttcatcctgggccacgagctctcgcacggctttgattccgag 1277 Query: 601 ggcatgaccttctcctcgcacggagtgggaagtagcgccgtggacagggagcttgatagg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1278 ggcatgaccttctcctcgcacggagtgggaagtagcgccgtggacagggagcttgatagg 1337 Query: 661 aatccgcgattccagcaggagcttggctgtttgcgcagaagattcgggaggaagcggtat 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1338 aatccgcgattccagcaggagcttggctgtttgcgcagaagattcgggaggaagcggtat 1397 Query: 721 gaaaagttcgcggacgccagtngcttggaactggcctattccgcctactttgacaccgca 780 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 1398 gaaaagttcgcggacgccagtggcttggaactggcctattccgcctactttgacaccgca 1457 Query: 781 caaacggatcataagcggaatcgaagtgccgaggagttggtcactcagaagcagcagtt 839 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1458 caaacggatcataagcggaatcgaagtgccgaggagttggtcactcagaagcagcagtt 1516 >CG3239-RA feature: mRNA loc=X:complement(5234654..5236386, 5236451..5236644);ID=FBan0003239;gene_id=FBgn0029769;gene _sym=CG3239;sym=CG3239;scaffold=AE003434;len=1927 Length = 1927 Score = 1657 bits (836), Expect = 0.0 Identities = 838/839 (99%) Strand = Plus / Plus Query: 1 cagtccagacagatcctcagtcatcctgctgcatggttggtagagaagaatcatcccagg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 814 cagtccagacagatcctcagtcatcctgctgcatggttggtagagaagaatcatcccagg 873 Query: 61 ctcaaggaggagccagtgctgcaggacattttcgcggagctgaagcagcgctttggccaa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 874 ctcaaggaggagccagtgctgcaggacattttcgcggagctgaagcagcgctttggccaa 933 Query: 121 aagcttctggcgaacaggaataactttactcgcagcacacagcactttcttttgggcaaa 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 934 aagcttctggcgaacaggaataactttactcgcagcacacagcactttcttttgggcaaa 993 Query: 181 ttgaaaaggatgcggctgcgattgagcatcctgcccagaaattcttcggcccaatccatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 994 ttgaaaaggatgcggctgcgattgagcatcctgcccagaaattcttcggcccaatccatg 1053 Query: 241 gtgcgacgcatcgaaaggcactacagggatgttcacatgaatgctagcgattattttgga 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1054 gtgcgacgcatcgaaaggcactacagggatgttcacatgaatgctagcgattattttgga 1113 Query: 301 aatctacatatcggccttaatcactccagatcccacaagaagtacgcccaactatgggcc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1114 aatctacatatcggccttaatcactccagatcccacaagaagtacgcccaactatgggcc 1173 Query: 361 atagtcttcggccgccagttgattccaagccgaatatccaagagcgatttgtatcccacc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1174 atagtcttcggccgccagttgattccaagccgaatatccaagagcgatttgtatcccacc 1233 Query: 421 caagtgcgtgggtatggcacctatgcctctgcgttctacatagtcaaacagaatatgcta 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1234 caagtgcgtgggtatggcacctatgcctctgcgttctacatagtcaaacagaatatgcta 1293 Query: 481 attgtgccactatcgctcctggaaccgccgttctacacacatggccagccgtcgatactt 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1294 attgtgccactatcgctcctggaaccgccgttctacacacatggccagccgtcgatactt 1353 Query: 541 acctacagtgcactgggcttcatcctgggccacgagctctcgcacggctttgattccgag 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1354 acctacagtgcactgggcttcatcctgggccacgagctctcgcacggctttgattccgag 1413 Query: 601 ggcatgaccttctcctcgcacggagtgggaagtagcgccgtggacagggagcttgatagg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1414 ggcatgaccttctcctcgcacggagtgggaagtagcgccgtggacagggagcttgatagg 1473 Query: 661 aatccgcgattccagcaggagcttggctgtttgcgcagaagattcgggaggaagcggtat 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1474 aatccgcgattccagcaggagcttggctgtttgcgcagaagattcgggaggaagcggtat 1533 Query: 721 gaaaagttcgcggacgccagtngcttggaactggcctattccgcctactttgacaccgca 780 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 1534 gaaaagttcgcggacgccagtggcttggaactggcctattccgcctactttgacaccgca 1593 Query: 781 caaacggatcataagcggaatcgaagtgccgaggagttggtcactcagaagcagcagtt 839 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1594 caaacggatcataagcggaatcgaagtgccgaggagttggtcactcagaagcagcagtt 1652 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 20,004 Number of Sequences: 18737 Number of extensions: 20004 Number of successful extensions: 374 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 372 Number of HSP's gapped (non-prelim): 2 length of query: 839 length of database: 41,270,998 effective HSP length: 17 effective length of query: 822 effective length of database: 40,952,469 effective search space: 33662929518 effective search space used: 33662929518 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI113363|AI113363 GH06743.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH06743 5prime similar to M21017: D.melanogaster 18S, 5.8S 2S and 28S rRNA genes, complete, and 18S rRNA gene, 5' end, clone pDm238, mRNA sequence. (691 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,976 Number of Sequences: 18737 Number of extensions: 11976 Number of successful extensions: 195 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 195 Number of HSP's gapped (non-prelim): 0 length of query: 691 length of database: 41,270,998 effective HSP length: 17 effective length of query: 674 effective length of database: 40,952,469 effective search space: 27601964106 effective search space used: 27601964106 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI113593|AI113593 GH09955.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH09955 5, mRNA sequence. (970 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 45,757 Number of Sequences: 18737 Number of extensions: 45757 Number of successful extensions: 8910 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8910 Number of HSP's gapped (non-prelim): 0 length of query: 970 length of database: 41,270,998 effective HSP length: 18 effective length of query: 952 effective length of database: 40,933,732 effective search space: 38968912864 effective search space used: 38968912864 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 186 (369.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI113949|AI113949 GH10483.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH10483 5 similar to CG1598: FBan0001598 'enzyme' located on: 2R 43D4-43D5;: 04/10/2001, mRNA sequence. (689 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG1598-RA feature: mRNA loc=2R:complement(2599131..2599613,25996... 1017 0.0 >CG1598-RA feature: mRNA loc=2R:complement(2599131..2599613,2599673..2600113, 2600198..2600315, 2600379..2600597);ID=FBan0001598;gene_id=FBgn0033191;gene _sym=CG1598;sym=CG1598;scaffold=AE003840;len=1261 Length = 1261 Score = 1017 bits (513), Expect = 0.0 Identities = 513/513 (100%) Strand = Plus / Plus Query: 1 cgcgttatcacccaggtcaacgagcagttcaagaacccagatcaaactacattcgtctgc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 740 cgcgttatcacccaggtcaacgagcagttcaagaacccagatcaaactacattcgtctgc 799 Query: 61 gtgtgcatagcagagttcttctcgctgtacgagacggaacgacttgtgcaagagctaacc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 800 gtgtgcatagcagagttcttctcgctgtacgagacggaacgacttgtgcaagagctaacc 859 Query: 121 aagtgcggcatcgacgtccacaacatcattgtaaaccaactgctgtttctgcagaactcg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 860 aagtgcggcatcgacgtccacaacatcattgtaaaccaactgctgtttctgcagaactcg 919 Query: 181 cacgactcgtgcagcatgtgcgcctcccgcttcaagattcaggagaagtacctggaccag 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 920 cacgactcgtgcagcatgtgcgcctcccgcttcaagattcaggagaagtacctggaccag 979 Query: 241 attgccgacctgtatgaagacttccacgtaaccaagttgccgctcctcgagaaagaggtg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 980 attgccgacctgtatgaagacttccacgtaaccaagttgccgctcctcgagaaagaggtg 1039 Query: 301 cgcggtccagagagcatccgttctttctccgagaaccttatgaagccctacaaccccaag 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1040 cgcggtccagagagcatccgttctttctccgagaaccttatgaagccctacaaccccaag 1099 Query: 361 ggcgagcccaaggaataggatagcccgtccaaccctttacccatccgtttgtaagtttct 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1100 ggcgagcccaaggaataggatagcccgtccaaccctttacccatccgtttgtaagtttct 1159 Query: 421 tccttagtttgtgtgaacagaaagtgcgtaaaataaattaaagttgaggcagcgatcccc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1160 tccttagtttgtgtgaacagaaagtgcgtaaaataaattaaagttgaggcagcgatcccc 1219 Query: 481 gaagggatctgcttcgacgtgtaatgcgtagac 513 ||||||||||||||||||||||||||||||||| Sbjct: 1220 gaagggatctgcttcgacgtgtaatgcgtagac 1252 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,739 Number of Sequences: 18737 Number of extensions: 13739 Number of successful extensions: 313 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 312 Number of HSP's gapped (non-prelim): 1 length of query: 689 length of database: 41,270,998 effective HSP length: 17 effective length of query: 672 effective length of database: 40,952,469 effective search space: 27520059168 effective search space used: 27520059168 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI113976|AI113976 GH10550.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH10550 5 similar to CG4706: FBan0004706 'enzyme' located on: 3R 86D4-86D4;: 04/10/2001, mRNA sequence. (598 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Acon-RB feature: mRNA loc=2L:join(21138100..21138548,21139935..2... 1178 0.0 >Acon-RB feature: mRNA loc=2L:join(21138100..21138548,21139935..21141572, 21141639..21142142, 21142204..21142768);ID=FBan0009244;gene_id=FBgn0010100;ge ne_sym=Acon;sym=CG9244;scaffold=AE003669;len=3156 Length = 3156 Score = 1178 bits (594), Expect = 0.0 Identities = 597/598 (99%) Strand = Plus / Plus Query: 1 atcggagctaccacctctctgttccccttcaaccagcgcatggctgattacctgaaatcg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1305 atcggagctaccacctctctgttccccttcaaccagcgcatggctgattacctgaaatcg 1364 Query: 61 acaggccgtgctggcattgcctccgaagcccagaagtaccaggccaagattctgtccgct 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1365 acaggccgtgctggcattgcctccgaagcccagaagtaccaggccaagattctgtccgct 1424 Query: 121 gacaagaactgcgagtacgatgagctgattgaaatcaacctagacaccctggagccccat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1425 gacaagaactgcgagtacgatgagctgattgaaatcaacctagacaccctggagccccat 1484 Query: 181 gttaacggaccattcactcccgatttgggccatcccatcagcaagctaggcgagaactcg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1485 gttaacggaccattcactcccgatttgggccatcccatcagcaagctaggcgagaactcg 1544 Query: 241 aagaagaacgggtaccctatggacatccgtgtaggtcttattggctcttgcaccaactct 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1545 aagaagaacgggtaccctatggacatccgtgtaggtcttattggctcttgcaccaactct 1604 Query: 301 tcgtatgaggacatgggtcgctgcgccagcatcgccaaggatgccatgagccatggcctc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1605 tcgtatgaggacatgggtcgctgcgccagcatcgccaaggatgccatgagccatggcctc 1664 Query: 361 aagtcgaagattcctttcaatgtgactcccggatcagagcagatccgtgccaccatcgag 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1665 aagtcgaagattcctttcaatgtgactcccggatcagagcagatccgtgccaccatcgag 1724 Query: 421 cgcgacggcatctctgaggtgttcgacaagttcggcggtaccgttctggccaacgcttgc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1725 cgcgacggcatctctgaggtgttcgacaagttcggcggtaccgttctggccaacgcttgc 1784 Query: 481 ggtccctgcattggacagtgggatcgtaaggacgttaagaagggcgacaagaacaccatt 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1785 ggtccctgcattggacagtgggatcgtaaggacgttaagaagggcgacaagaacaccatt 1844 Query: 541 gtcaccttctacaaccgaaactttactggcaggaacgacgctaacccggccacccatt 598 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1845 gtcacctcctacaaccgaaactttactggcaggaacgacgctaacccggccacccatt 1902 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,335 Number of Sequences: 18737 Number of extensions: 12335 Number of successful extensions: 285 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 284 Number of HSP's gapped (non-prelim): 1 length of query: 598 length of database: 41,270,998 effective HSP length: 17 effective length of query: 581 effective length of database: 40,952,469 effective search space: 23793384489 effective search space used: 23793384489 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI114205|AI114205 GH10940.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH10940 5 similar to CG18662: FBan0018662 located on: 2L 29F7-29F7;: 04/10/2001, mRNA sequence. (763 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG18662-RA feature: mRNA loc=2L:join(8972911..8973014,8973086..8... 1126 0.0 >CG18662-RA feature: mRNA loc=2L:join(8972911..8973014,8973086..8973250, 8973308..8973668);ID=FBan0018662;gene_id=FBgn0040963;gen e_sym=CG18662;sym=CG18662;scaffold=AE003623;len=630 Length = 630 Score = 1126 bits (568), Expect = 0.0 Identities = 574/576 (99%) Strand = Plus / Minus Query: 107 acgtatagtcaaatttaattcaaatttacgtaagcaatgcgcacacagtcgtaagaccaa 166 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 625 acgtatagtcaaatttaattcaaatttacgtaagcaatgcgcacacagtcgtaagaccaa 566 Query: 167 aatttgtaaaaaatatgtcgagccaatagtgagtgtttcttaaaacagaaatattggtca 226 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 565 aatttgtaaaaaatatgtcgagccaatagtgagtgtttcttaaaacagaaatattggtca 506 Query: 227 gtacacatccttctagggctccattccaccagattcggcatcgatcttgtgatcggtata 286 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 505 gtacacatccttctagggctccattccaccagattcggcatcgatcttgtgatcggtata 446 Query: 287 gatgggttgcaatatctcacgggcagcttcgtgatcagcttttcccagggcctgtgatct 346 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 445 gatgggttgcaatatctcacgggcagcttcgtgatcagcttttcccagggcctgtgatct 386 Query: 347 tccatacagcttgatgtacttcttttccttgtcgtgaaccaagtaaccacctccaagacc 406 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 385 tccatacagcttgatgtacttcttttccttgtcgtgaaccaagtaaccacctccaagacc 326 Query: 407 ctgggtgcacaagcccatcgactcagcctcctttttcaactcatcgtatacatcaagatg 466 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 325 ctgggtgcacaagcccatcgactcagcctcctttttcaactcatcgtatacatcaagatg 266 Query: 467 gtacttggccttggaaaggctacgaatcacctgcttggcgctacccatttccccatggat 526 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 265 gtacttggccttggaaaggctacgaatcacctgcttggcgctacccatttccccatggat 206 Query: 527 ataaacgtgggccatcatgtactttgattttccactttccaccttggcaacaggaaaagc 586 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 205 ataaacgtgggccatcatgtactttgattttccactttccaccttggcaacaggaaaagc 146 Query: 587 gactagacttcgcattggcttctcacaataaagtcgagccgcttgcatcattggccgcca 646 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 145 gactagacttcgcattggcttctcacaataaagtcgagccgcttgcatcattggccgcca 86 Query: 647 aacgggtttaagaaattatccagcaaactacatgtc 682 ||||||||||||||||| ||||||||||| |||||| Sbjct: 85 aacgggtttaagaaattttccagcaaactccatgtc 50 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,411 Number of Sequences: 18737 Number of extensions: 15411 Number of successful extensions: 432 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 431 Number of HSP's gapped (non-prelim): 1 length of query: 763 length of database: 41,270,998 effective HSP length: 17 effective length of query: 746 effective length of database: 40,952,469 effective search space: 30550541874 effective search space used: 30550541874 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI114218|AI114218 GH10978.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH10978 3prime, mRNA sequence. (553 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG4169-RA feature: mRNA loc=3L:join(16533003..16533323,16533468.... 1088 0.0 >CG4169-RA feature: mRNA loc=3L:join(16533003..16533323,16533468..16533601, 16533658..16533961, 16534064..16534995);ID=FBan0004169;gene_id=FBgn0036642;g ene_sym=CG4169;sym=CG4169;scaffold=AE003526;len=1691 Length = 1691 Score = 1088 bits (549), Expect = 0.0 Identities = 552/553 (99%) Strand = Plus / Plus Query: 1 ctgtatgaatgtaactgccaaggaaaaacatttgttaaattttttcacttagtcaaatta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ctgtatgaatgtaactgccaaggaaaaacatttgttaaattttttcacttagtcaaatta 60 Query: 61 ttcaagatcacgatatttcgaaaatcccgtgacttaccataagtcacagctggtactcgg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ttcaagatcacgatatttcgaaaatcccgtgacttaccataagtcacagctggtactcgg 120 Query: 121 tgtgaccattttggagcgcattgaaaaactagggcttagttgaaccccgtgcgacggcca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tgtgaccattttggagcgcattgaaaaactagggcttagttgaaccccgtgcgacggcca 180 Query: 181 cactagcgcgaacgaccgtaaaaattttcgctctgcgaatatttgtaaaaaattgcttag 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 cactagcgcgaacgaccgtaaaaattttcgctctgcgaatatttgtaaaaaattgcttag 240 Query: 241 aaagcaaatagaagaaattgtagcataatccacgccatggcctgtaacgctagcaagacg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 aaagcaaatagaagaaattgtagcataatccacgccatggcctgtaacgctagcaagacg 300 Query: 301 tcgctcctgcgcgccatcgccaaacgaggctacgccacctgcccgcgtcccgtcggcgac 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 tcgctcctgcgcgccatcgccaaacgaggctacgccacctgcccgcgtcccgtcggcgac 360 Query: 361 ctgtccgccgtgaacgtcaaggtgctggagaacaaactggtggtagccaccgccgatgca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 ctgtccgccgtgaacgtcaaggtgctggagaacaaactggtggtagccaccgccgatgca 420 Query: 421 actcttcccgtttcgcgcgtctctttggtgctgggagccggatcacgaaacgagtcctac 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 actcttcccgtttcgcgcgtctctttggtgctgggagccggatcacgaaacgagtcctac 480 Query: 481 gacatccagggagcctcgcacctgcttcgtttggccggaggactgatcacccagaactcg 540 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 481 gacatccagggagcctcgcacctgcttcgtttggccggaggactgagcacccagaactcg 540 Query: 541 accgccttcgcca 553 ||||||||||||| Sbjct: 541 accgccttcgcca 553 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,290 Number of Sequences: 18737 Number of extensions: 12290 Number of successful extensions: 282 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 281 Number of HSP's gapped (non-prelim): 1 length of query: 553 length of database: 41,270,998 effective HSP length: 17 effective length of query: 536 effective length of database: 40,952,469 effective search space: 21950523384 effective search space used: 21950523384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI114385|AI114385 GH11240.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH11240 5prime, mRNA sequence. (573 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG11089-RA feature: mRNA loc=3R:join(20693447..20693513,20695436... 1136 0.0 >CG11089-RA feature: mRNA loc=3R:join(20693447..20693513,20695436..20695498, 20695556..20696628,20696692..20697125, 20697185..20697311, 20697373..20697857);ID=FBan0011089;gene_id=FBgn0039241;g ene_sym=CG11089;sym=CG11089;scaffold=AE003749;len=2249 Length = 2249 Score = 1136 bits (573), Expect = 0.0 Identities = 573/573 (100%) Strand = Plus / Plus Query: 1 aattttgtgtggttccactatttccctttaaaactctaccattatttttcgatttttgcc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 13 aattttgtgtggttccactatttccctttaaaactctaccattatttttcgatttttgcc 72 Query: 61 cagcggttcagacgcaattagagaaaccaatcatcaaccatgagctccagcaagattgct 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 73 cagcggttcagacgcaattagagaaaccaatcatcaaccatgagctccagcaagattgct 132 Query: 121 cttctcagtgtgtcggacaagacgggcctgctcgacttgggcaagagtttggtggcactg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 133 cttctcagtgtgtcggacaagacgggcctgctcgacttgggcaagagtttggtggcactg 192 Query: 181 ggctttgacctggttgccagtggaggcactgcaactagcttgcgtggcgctggcctgaag 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 193 ggctttgacctggttgccagtggaggcactgcaactagcttgcgtggcgctggcctgaag 252 Query: 241 gtgagggatgtctcggagattacaggagcacctgagatgctcggtggacgtgtgaagacg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 253 gtgagggatgtctcggagattacaggagcacctgagatgctcggtggacgtgtgaagacg 312 Query: 301 ctgcacccggctgtgcatgctggaatcctttcccgcaccaccgactctgatctggctgac 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 313 ctgcacccggctgtgcatgctggaatcctttcccgcaccaccgactctgatctggctgac 372 Query: 361 atgcgcaagcagggcttcgatcttatccagctggtggtctgcaatctgtaccccttcgcc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 373 atgcgcaagcagggcttcgatcttatccagctggtggtctgcaatctgtaccccttcgcc 432 Query: 421 agcaccgtagcgaagcctgatgttacgctggccgatgccgtggagaacatcgatattgga 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 433 agcaccgtagcgaagcctgatgttacgctggccgatgccgtggagaacatcgatattgga 492 Query: 481 ggcgttactctgctccgggcggctgctaagaatcaccagcgagtcacagttgtctgcgaa 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 493 ggcgttactctgctccgggcggctgctaagaatcaccagcgagtcacagttgtctgcgaa 552 Query: 541 gcagtggattatgatcgtgtcctgtcggagttg 573 ||||||||||||||||||||||||||||||||| Sbjct: 553 gcagtggattatgatcgtgtcctgtcggagttg 585 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,499 Number of Sequences: 18737 Number of extensions: 13499 Number of successful extensions: 302 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 301 Number of HSP's gapped (non-prelim): 1 length of query: 573 length of database: 41,270,998 effective HSP length: 17 effective length of query: 556 effective length of database: 40,952,469 effective search space: 22769572764 effective search space used: 22769572764 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI134036|AI134036 GH11373.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH11373 5prime, mRNA sequence. (617 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31538-RA feature: mRNA loc=3R:complement(1101391..1103554);ID=... 1223 0.0 >CG31538-RA feature: mRNA loc=3R:complement(1101391..1103554);ID=FBan0031538;gene_ id=FBgn0051538;gene_sym=CG31538;sym=CG31538;scaffold=AE0 03603;len=2164 Length = 2164 Score = 1223 bits (617), Expect = 0.0 Identities = 617/617 (100%) Strand = Plus / Plus Query: 1 ctctccaaaatagaaaattcgaatttatttattcagtgttttgttggtcttacgagtccg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 93 ctctccaaaatagaaaattcgaatttatttattcagtgttttgttggtcttacgagtccg 152 Query: 61 tgaaatcgagttctttagtccgtgaagaaacgtgcttcgttttcgcaggtttttgctaaa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 153 tgaaatcgagttctttagtccgtgaagaaacgtgcttcgttttcgcaggtttttgctaaa 212 Query: 121 ttgttcgtgtatccattggttcacattatgagtactcatcagtatagcctggggaggctg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 213 ttgttcgtgtatccattggttcacattatgagtactcatcagtatagcctggggaggctg 272 Query: 181 gcccgccgaggcttcagcctgcggatgaatccgctggccggcacactgcaaaggctttac 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 273 gcccgccgaggcttcagcctgcggatgaatccgctggccggcacactgcaaaggctttac 332 Query: 241 cacacccgtagcaggccatgtgtggcccagagtgtgagccaggtgggtgaacggtccaag 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 333 cacacccgtagcaggccatgtgtggcccagagtgtgagccaggtgggtgaacggtccaag 392 Query: 301 ccaacgttgcagccctacgacttcgaccgaagccgggtgcgtaaaattgccggcgagagg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 393 ccaacgttgcagccctacgacttcgaccgaagccgggtgcgtaaaattgccggcgagagg 452 Query: 361 aagacgctggtcgaccaggtgcggggcatgagcacaagcctgggacatgccaagttggtg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 453 aagacgctggtcgaccaggtgcggggcatgagcacaagcctgggacatgccaagttggtg 512 Query: 421 ccccaaaagatgtacggcaagacgaggctgttctcctccggaagcaccctctacagtcgc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 513 ccccaaaagatgtacggcaagacgaggctgttctcctccggaagcaccctctacagtcgc 572 Query: 481 ttgcagcatctggaacagcagaacgaggaatattcgagtcgagagtcccagccgacgcac 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 573 ttgcagcatctggaacagcagaacgaggaatattcgagtcgagagtcccagccgacgcac 632 Query: 541 accacagcctcattgtcggccacccagcagaggtacaatcaggcggcaggattcggcaag 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 633 accacagcctcattgtcggccacccagcagaggtacaatcaggcggcaggattcggcaag 692 Query: 601 ggcatggccatacagac 617 ||||||||||||||||| Sbjct: 693 ggcatggccatacagac 709 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,569 Number of Sequences: 18737 Number of extensions: 13569 Number of successful extensions: 218 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 217 Number of HSP's gapped (non-prelim): 1 length of query: 617 length of database: 41,270,998 effective HSP length: 17 effective length of query: 600 effective length of database: 40,952,469 effective search space: 24571481400 effective search space used: 24571481400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI134342|AI134342 GH11778.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH11778 5prime similar to X52286: Cat FBgn0000261 PID:g7690 SWISS-PROT:P17336, mRNA sequence. (587 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Cat-RA feature: mRNA loc=3L:join(18771485..18771721,18775217..18... 793 0.0 >Cat-RA feature: mRNA loc=3L:join(18771485..18771721,18775217..18776137, 18776235..18777073);ID=FBan0006871;gene_id=FBgn0000261;ge ne_sym=Cat;sym=CG6871;scaffold=AE003519;len=1997 Length = 1997 Score = 793 bits (400), Expect = 0.0 Identities = 403/404 (99%) Strand = Plus / Minus Query: 20 ggaagttctcaatcttcaccttgtacgggcagttcaccgggatctgcgagtagttcggtc 79 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 1333 ggaagttctcaatcttcaccttgtacgggcagttcaccgggatctgcaagtagttcggtc 1274 Query: 80 ccaggcgatggcgatgggtgtccgagtaggagaacagacgaccatgcagcatcttgtccg 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1273 ccaggcgatggcgatgggtgtccgagtaggagaacagacgaccatgcagcatcttgtccg 1214 Query: 140 gagagggctcaacgccgggcaccaggtgagcgggactgaaggcgatctgctccacctcag 199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1213 gagagggctcaacgccgggcaccaggtgagcgggactgaaggcgatctgctccacctcag 1154 Query: 200 caaagtagttcttgggattgcgatccagcaccattttgcccacaggaatcagagggtact 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1153 caaagtagttcttgggattgcgatccagcaccattttgcccacaggaatcagagggtact 1094 Query: 260 ccttctgcgaccagaccttggtgacatcgaaggggttgtacttgaacttcttggcctgct 319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1093 ccttctgcgaccagaccttggtgacatcgaaggggttgtacttgaacttcttggcctgct 1034 Query: 320 cgtaggtcatgacctgaatgtacatcgtccaactggggaacttgcaggtcttgatcctgt 379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1033 cgtaggtcatgacctgaatgtacatcgtccaactggggaacttgcaggtcttgatcctgt 974 Query: 380 tgtacagatcgcgaatgctgtaatccggatcagtgctagccaac 423 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 973 tgtacagatcgcgaatgctgtaatccggatcagtgctagccaac 930 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,138 Number of Sequences: 18737 Number of extensions: 13138 Number of successful extensions: 353 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 351 Number of HSP's gapped (non-prelim): 2 length of query: 587 length of database: 41,270,998 effective HSP length: 17 effective length of query: 570 effective length of database: 40,952,469 effective search space: 23342907330 effective search space used: 23342907330 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI134428|AI134428 GH11893.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH11893 5prime similar to M21017: D.melanogaster 18S, 5.8S 2S and 28S rRNA genes, complete, and 18S rRNA gene, 5' end, clone pDm238, mRNA sequence. (562 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6925 Number of Sequences: 18737 Number of extensions: 6925 Number of successful extensions: 134 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 134 Number of HSP's gapped (non-prelim): 0 length of query: 562 length of database: 41,270,998 effective HSP length: 17 effective length of query: 545 effective length of database: 40,952,469 effective search space: 22319095605 effective search space used: 22319095605 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI134984|AI134984 GH12586.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH12586 5 similar to CG4461: FBan0004461 'chaperone' located on: 3L 67B1-67B1;: 04/10/2001, mRNA sequence. (651 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG4461-RA feature: mRNA loc=3L:9334139..9334979;ID=FBan0004461;g... 1285 0.0 >CG4461-RA feature: mRNA loc=3L:9334139..9334979;ID=FBan0004461;gene_id=FBgn00359 82;gene_sym=CG4461;sym=CG4461;scaffold=AE003552;len=841 Length = 841 Score = 1285 bits (648), Expect = 0.0 Identities = 650/651 (99%) Strand = Plus / Plus Query: 1 actcgtacataagcgaatcgctgccctaatcccggcgagaaatgtctctggtgcctacca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 15 actcgtacataagcgaatcgctgccctaatcccggcgagaaatgtctctggtgcctacca 74 Query: 61 catatcgcgatttgtcgcgcgaatttgatcgactccgtccgctctaccatccgccgtatg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 75 catatcgcgatttgtcgcgcgaatttgatcgactccgtccgctctaccatccgccgtatg 134 Query: 121 atttccagctatatccgtatctgtgggacgattcgcgtctctggtggccatcgcctcaca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 135 atttccagctatatccgtatctgtgggacgattcgcgtctctggtggccatcgcctcaca 194 Query: 181 ccagcagaagtgacctactccgacctctggatgagctggtgtcgcgtcgagtgcgcaacc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 195 ccagcagaagtgacctactccgacctctggatgagctggtgtcgcgtcgagtgcgcaacc 254 Query: 241 agttgatccaatcgacgccgtatgagtgggcgcatccaatgaggtgggacaactactatt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 255 agttgatccaatcgacgccgtatgagtgggcgcatccaatgaggtgggacaactactatt 314 Query: 301 ccggtgagcgtgtccatgtggatgagaagggatttcggattgacatcgatgtgcgacaat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 315 ccggtgagcgtgtccatgtggatgagaagggatttcggattgacatcgatgtgcgacaat 374 Query: 361 ttcatccccacgacattgtggtcaaaaccaatgacgactatgtcatcgtccagggaaatc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 375 ttcatccccacgacattgtggtcaaaaccaatgacgactatgtcatcgtccagggaaatc 434 Query: 421 acaatcgtcgcgacgagggttccaatggcctggtggagcggcactttgtgaggaagtacc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 435 acaatcgtcgcgacgagggttccaatggcctggtggagcggcactttgtgaggaagtacc 494 Query: 481 ttctgccccgcggatacaatgccaatgaggtaatctcggacatatccagcgatggcatcc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 495 ttctgccccgcggatacaatgccaatgaggtaatctcggacatatccagcgatggcatcc 554 Query: 541 tcaccatcaaggctccaccaccgncgccagccaagtactacacgcccggagagagattgg 600 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 555 tcaccatcaaggctccaccaccgccgccagccaagtactacacgcccggagagagattgg 614 Query: 601 tccgcgttcatgaaaccggaaagctggccctgccctggaaatagtggacca 651 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 615 tccgcgttcatgaaaccggaaagctggccctgccctggaaatagtggacca 665 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,656 Number of Sequences: 18737 Number of extensions: 14656 Number of successful extensions: 296 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 295 Number of HSP's gapped (non-prelim): 1 length of query: 651 length of database: 41,270,998 effective HSP length: 17 effective length of query: 634 effective length of database: 40,952,469 effective search space: 25963865346 effective search space used: 25963865346 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI238003|AI238003 GH13953.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH13953 5 similar to CG10252: FBan0010252 GO:[] located on: 3R 95B2-95B3;: 08/12/2002, mRNA sequence. (811 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG10252-RA feature: mRNA loc=3R:complement(19511593..19511924,19... 1578 0.0 >CG10252-RA feature: mRNA loc=3R:complement(19511593..19511924,19511996..19512182, 19512243..19512461, 19512523..19512657);ID=FBan0010252;gene_id=FBgn0039104;g ene_sym=CG10252;sym=CG10252;scaffold=AE003744;len=873 Length = 873 Score = 1578 bits (796), Expect = 0.0 Identities = 802/804 (99%) Strand = Plus / Plus Query: 1 ccaacacctaatattgggttctaaattttcaaaatagattttctttctaatattgcacaa 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 46 ccaacacctaatattgggttctaaattttcaaaatagattttctttctaatattgcacaa 105 Query: 61 aactaacaaaaatggcggtgcgaccttttggccctggacccggcgtttacatgctgcccc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 106 aactaacaaaaatggcggtgcgaccttttggccctggacccggcgtttacatgctgcccc 165 Query: 121 ccactgtgggctatgataagcatgacaaccgcaaacagcggttgccgcagtactctttcg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 166 ccactgtgggctatgataagcatgacaaccgcaaacagcggttgccgcagtactctttcg 225 Query: 181 gcatgcgcacccgtgctcctggtgaggatctgggtcctggtccaggggcctacaaggtgg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 226 gcatgcgcacccgtgctcctggtgaggatctgggtcctggtccaggggcctacaaggtgg 285 Query: 241 acaagttgactcgctatggcacgagcaagggtttggagttctcgatggcgcccagaacca 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 286 acaagttgactcgctatggcacgagcaagggtttggagttctcgatggcgcccagaacca 345 Query: 301 atgtcatcgataagcgaagcagtcccggtccgggagcacacgatgttcataataggccat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 346 atgtcatcgataagcgaagcagtcccggtccgggagcacacgatgttcataataggccat 405 Query: 361 tctttaagggggttaatgctccttcgtattcgatgggcctacgaacggactttaacttca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 406 tctttaagggggttaatgctccttcgtattcgatgggcctacgaacggactttaacttca 465 Query: 421 agaaggatggtcccggtcccaatgcctacaagtacgaggtcaatgccgttcgtcctggag 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 466 agaaggatggtcccggtcccaatgcctacaagtacgaggtcaatgccgttcgtcctggag 525 Query: 481 tcccgagctatagcatgggactacaaacaaagattttgaacaagacgaattctccgggtc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 526 tcccgagctatagcatgggactacaaacaaagattttgaacaagacgaattctccgggtc 585 Query: 541 cggctgcatatggcggtggtgatatcaatgtcaaactgacacgtgctccgatatactcga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 586 cggctgcatatggcggtggtgatatcaatgtcaaactgacacgtgctccgatatactcga 645 Query: 601 tgcagccgcgcaccactattccgggcgagaatgtcggacctggacccaactactacgacc 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 646 tgcagccgcgcaccactattccgggcgagaatgtcggacctggacccaactactacgacc 705 Query: 661 tcatgtactatcgtcctggcaagagtggaccgggctactcctttggtgtgcgccaccacc 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 706 tcatgtactatcgtcctggcaagagtggaccgggctactcctttggtgtgcgccaccacc 765 Query: 721 agttcgctccgcctatgatagttagatgtgacaatatgtagaccaagtgcaatattgtga 780 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 766 agttcgctccgcctatgatagttagatgtgacaatatgtagaccaagtgcaatattggaa 825 Query: 781 gaaatatatgctaaaatttttgtg 804 |||||||||||||||||||||||| Sbjct: 826 gaaatatatgctaaaatttttgtg 849 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,492 Number of Sequences: 18737 Number of extensions: 16492 Number of successful extensions: 319 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 318 Number of HSP's gapped (non-prelim): 1 length of query: 811 length of database: 41,270,998 effective HSP length: 17 effective length of query: 794 effective length of database: 40,952,469 effective search space: 32516260386 effective search space used: 32516260386 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI238065|AI238065 GH14051.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH14051 5 similar to CG9699: FBan0009699 'cytoskeletal structural protein' located on: X 15A1-15A1;: 04/10/2001, mRNA sequence. (593 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG9699-RG feature: mRNA loc=X:complement(16415231..16416431,1641... 1049 0.0 CG9699-RF feature: mRNA loc=X:complement(16415231..16416431,1641... 1049 0.0 CG9699-RE feature: mRNA loc=X:complement(16415231..16416431,1641... 1049 0.0 CG9699-RD feature: mRNA loc=X:complement(16415231..16416431,1641... 1049 0.0 CG9699-RC feature: mRNA loc=X:complement(16415231..16416431,1641... 1049 0.0 CG9699-RB feature: mRNA loc=X:complement(16415231..16416431,1641... 1049 0.0 CG9699-RA feature: mRNA loc=X:complement(16415231..16416431,1641... 1049 0.0 >CG9699-RG feature: mRNA loc=X:complement(16415231..16416431,16416528..16416930, 16417330..16417789, 16418180..16418534);ID=FBan0009699;gene_id=FBgn0030772;ge ne_sym=CG9699;sym=CG9699;scaffold=AE003503;len=2419 Length = 2419 Score = 1049 bits (529), Expect = 0.0 Identities = 529/529 (100%) Strand = Plus / Minus Query: 65 ttaaaaagtctgtgctagcttataaacaaagtcgatttggttgcagctgctccaggattt 124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1622 ttaaaaagtctgtgctagcttataaacaaagtcgatttggttgcagctgctccaggattt 1563 Query: 125 ctctgggtcaccatataagtcctatatagtaggtagatgcatatatggcggtgcaaaatt 184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1562 ctctgggtcaccatataagtcctatatagtaggtagatgcatatatggcggtgcaaaatt 1503 Query: 185 gaacacgttcccatttccgttccctagacgtcgatcacgctgtcattcttcttcatctcc 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1502 gaacacgttcccatttccgttccctagacgtcgatcacgctgtcattcttcttcatctcc 1443 Query: 245 atgagatgggtctgcttgagcttctcctgcatctgggtgagcatgtcctgcatcctcctt 304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1442 atgagatgggtctgcttgagcttctcctgcatctgggtgagcatgtcctgcatcctcctt 1383 Query: 305 atctcctcgtccttttgcaggagcagcctgtccgtctccgagatggccgcgtcgaatcca 364 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1382 atctcctcgtccttttgcaggagcagcctgtccgtctccgagatggccgcgtcgaatcca 1323 Query: 365 ttggtcgagctaatcgagtcccgcttcaacttgccgcgctcacgcagcgcgtgctgcgaa 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1322 ttggtcgagctaatcgagtcccgcttcaacttgccgcgctcacgcagcgcgtgctgcgaa 1263 Query: 425 atctgcgagatgcactgcgcccggaagttctcgtagtgcacgtcctgcgtggtgtccttg 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1262 atctgcgagatgcactgcgcccggaagttctcgtagtgcacgtcctgcgtggtgtccttg 1203 Query: 485 aggtcctgcatgtgcgtggatatcaagaaggtgcgcagcttgatgaagtcgctgtgctcc 544 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1202 aggtcctgcatgtgcgtggatatcaagaaggtgcgcagcttgatgaagtcgctgtgctcc 1143 Query: 545 ggatcctccacgtttaccacgccccacggatactggcgccctcggacct 593 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1142 ggatcctccacgtttaccacgccccacggatactggcgccctcggacct 1094 >CG9699-RF feature: mRNA loc=X:complement(16415231..16416431,16416528..16416930, 16417330..16417789,16425063..16425439, 16425851..16426192);ID=FBan0009699;gene_id=FBgn0030772;ge ne_sym=CG9699;sym=CG9699;scaffold=AE003503;len=2783 Length = 2783 Score = 1049 bits (529), Expect = 0.0 Identities = 529/529 (100%) Strand = Plus / Minus Query: 65 ttaaaaagtctgtgctagcttataaacaaagtcgatttggttgcagctgctccaggattt 124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1986 ttaaaaagtctgtgctagcttataaacaaagtcgatttggttgcagctgctccaggattt 1927 Query: 125 ctctgggtcaccatataagtcctatatagtaggtagatgcatatatggcggtgcaaaatt 184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1926 ctctgggtcaccatataagtcctatatagtaggtagatgcatatatggcggtgcaaaatt 1867 Query: 185 gaacacgttcccatttccgttccctagacgtcgatcacgctgtcattcttcttcatctcc 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1866 gaacacgttcccatttccgttccctagacgtcgatcacgctgtcattcttcttcatctcc 1807 Query: 245 atgagatgggtctgcttgagcttctcctgcatctgggtgagcatgtcctgcatcctcctt 304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1806 atgagatgggtctgcttgagcttctcctgcatctgggtgagcatgtcctgcatcctcctt 1747 Query: 305 atctcctcgtccttttgcaggagcagcctgtccgtctccgagatggccgcgtcgaatcca 364 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1746 atctcctcgtccttttgcaggagcagcctgtccgtctccgagatggccgcgtcgaatcca 1687 Query: 365 ttggtcgagctaatcgagtcccgcttcaacttgccgcgctcacgcagcgcgtgctgcgaa 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1686 ttggtcgagctaatcgagtcccgcttcaacttgccgcgctcacgcagcgcgtgctgcgaa 1627 Query: 425 atctgcgagatgcactgcgcccggaagttctcgtagtgcacgtcctgcgtggtgtccttg 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1626 atctgcgagatgcactgcgcccggaagttctcgtagtgcacgtcctgcgtggtgtccttg 1567 Query: 485 aggtcctgcatgtgcgtggatatcaagaaggtgcgcagcttgatgaagtcgctgtgctcc 544 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1566 aggtcctgcatgtgcgtggatatcaagaaggtgcgcagcttgatgaagtcgctgtgctcc 1507 Query: 545 ggatcctccacgtttaccacgccccacggatactggcgccctcggacct 593 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1506 ggatcctccacgtttaccacgccccacggatactggcgccctcggacct 1458 >CG9699-RE feature: mRNA loc=X:complement(16415231..16416431,16416528..16416930, 16417330..16417789,16425063..16425391, 16425638..16426187);ID=FBan0009699;gene_id=FBgn0030772;ge ne_sym=CG9699;sym=CG9699;scaffold=AE003503;len=2943 Length = 2943 Score = 1049 bits (529), Expect = 0.0 Identities = 529/529 (100%) Strand = Plus / Minus Query: 65 ttaaaaagtctgtgctagcttataaacaaagtcgatttggttgcagctgctccaggattt 124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2146 ttaaaaagtctgtgctagcttataaacaaagtcgatttggttgcagctgctccaggattt 2087 Query: 125 ctctgggtcaccatataagtcctatatagtaggtagatgcatatatggcggtgcaaaatt 184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2086 ctctgggtcaccatataagtcctatatagtaggtagatgcatatatggcggtgcaaaatt 2027 Query: 185 gaacacgttcccatttccgttccctagacgtcgatcacgctgtcattcttcttcatctcc 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2026 gaacacgttcccatttccgttccctagacgtcgatcacgctgtcattcttcttcatctcc 1967 Query: 245 atgagatgggtctgcttgagcttctcctgcatctgggtgagcatgtcctgcatcctcctt 304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1966 atgagatgggtctgcttgagcttctcctgcatctgggtgagcatgtcctgcatcctcctt 1907 Query: 305 atctcctcgtccttttgcaggagcagcctgtccgtctccgagatggccgcgtcgaatcca 364 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1906 atctcctcgtccttttgcaggagcagcctgtccgtctccgagatggccgcgtcgaatcca 1847 Query: 365 ttggtcgagctaatcgagtcccgcttcaacttgccgcgctcacgcagcgcgtgctgcgaa 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1846 ttggtcgagctaatcgagtcccgcttcaacttgccgcgctcacgcagcgcgtgctgcgaa 1787 Query: 425 atctgcgagatgcactgcgcccggaagttctcgtagtgcacgtcctgcgtggtgtccttg 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1786 atctgcgagatgcactgcgcccggaagttctcgtagtgcacgtcctgcgtggtgtccttg 1727 Query: 485 aggtcctgcatgtgcgtggatatcaagaaggtgcgcagcttgatgaagtcgctgtgctcc 544 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1726 aggtcctgcatgtgcgtggatatcaagaaggtgcgcagcttgatgaagtcgctgtgctcc 1667 Query: 545 ggatcctccacgtttaccacgccccacggatactggcgccctcggacct 593 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1666 ggatcctccacgtttaccacgccccacggatactggcgccctcggacct 1618 >CG9699-RD feature: mRNA loc=X:complement(16415231..16416431,16416528..16416930, 16417330..16417789,16425063..16425391, 16425634..16426187);ID=FBan0009699;gene_id=FBgn0030772;ge ne_sym=CG9699;sym=CG9699;scaffold=AE003503;len=2947 Length = 2947 Score = 1049 bits (529), Expect = 0.0 Identities = 529/529 (100%) Strand = Plus / Minus Query: 65 ttaaaaagtctgtgctagcttataaacaaagtcgatttggttgcagctgctccaggattt 124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2150 ttaaaaagtctgtgctagcttataaacaaagtcgatttggttgcagctgctccaggattt 2091 Query: 125 ctctgggtcaccatataagtcctatatagtaggtagatgcatatatggcggtgcaaaatt 184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2090 ctctgggtcaccatataagtcctatatagtaggtagatgcatatatggcggtgcaaaatt 2031 Query: 185 gaacacgttcccatttccgttccctagacgtcgatcacgctgtcattcttcttcatctcc 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2030 gaacacgttcccatttccgttccctagacgtcgatcacgctgtcattcttcttcatctcc 1971 Query: 245 atgagatgggtctgcttgagcttctcctgcatctgggtgagcatgtcctgcatcctcctt 304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1970 atgagatgggtctgcttgagcttctcctgcatctgggtgagcatgtcctgcatcctcctt 1911 Query: 305 atctcctcgtccttttgcaggagcagcctgtccgtctccgagatggccgcgtcgaatcca 364 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1910 atctcctcgtccttttgcaggagcagcctgtccgtctccgagatggccgcgtcgaatcca 1851 Query: 365 ttggtcgagctaatcgagtcccgcttcaacttgccgcgctcacgcagcgcgtgctgcgaa 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1850 ttggtcgagctaatcgagtcccgcttcaacttgccgcgctcacgcagcgcgtgctgcgaa 1791 Query: 425 atctgcgagatgcactgcgcccggaagttctcgtagtgcacgtcctgcgtggtgtccttg 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1790 atctgcgagatgcactgcgcccggaagttctcgtagtgcacgtcctgcgtggtgtccttg 1731 Query: 485 aggtcctgcatgtgcgtggatatcaagaaggtgcgcagcttgatgaagtcgctgtgctcc 544 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1730 aggtcctgcatgtgcgtggatatcaagaaggtgcgcagcttgatgaagtcgctgtgctcc 1671 Query: 545 ggatcctccacgtttaccacgccccacggatactggcgccctcggacct 593 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1670 ggatcctccacgtttaccacgccccacggatactggcgccctcggacct 1622 >CG9699-RC feature: mRNA loc=X:complement(16415231..16416431,16416528..16416930, 16417330..16417789,16425063..16425372, 16425638..16426164);ID=FBan0009699;gene_id=FBgn0030772;ge ne_sym=CG9699;sym=CG9699;scaffold=AE003503;len=2901 Length = 2901 Score = 1049 bits (529), Expect = 0.0 Identities = 529/529 (100%) Strand = Plus / Minus Query: 65 ttaaaaagtctgtgctagcttataaacaaagtcgatttggttgcagctgctccaggattt 124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2104 ttaaaaagtctgtgctagcttataaacaaagtcgatttggttgcagctgctccaggattt 2045 Query: 125 ctctgggtcaccatataagtcctatatagtaggtagatgcatatatggcggtgcaaaatt 184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2044 ctctgggtcaccatataagtcctatatagtaggtagatgcatatatggcggtgcaaaatt 1985 Query: 185 gaacacgttcccatttccgttccctagacgtcgatcacgctgtcattcttcttcatctcc 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1984 gaacacgttcccatttccgttccctagacgtcgatcacgctgtcattcttcttcatctcc 1925 Query: 245 atgagatgggtctgcttgagcttctcctgcatctgggtgagcatgtcctgcatcctcctt 304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1924 atgagatgggtctgcttgagcttctcctgcatctgggtgagcatgtcctgcatcctcctt 1865 Query: 305 atctcctcgtccttttgcaggagcagcctgtccgtctccgagatggccgcgtcgaatcca 364 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1864 atctcctcgtccttttgcaggagcagcctgtccgtctccgagatggccgcgtcgaatcca 1805 Query: 365 ttggtcgagctaatcgagtcccgcttcaacttgccgcgctcacgcagcgcgtgctgcgaa 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1804 ttggtcgagctaatcgagtcccgcttcaacttgccgcgctcacgcagcgcgtgctgcgaa 1745 Query: 425 atctgcgagatgcactgcgcccggaagttctcgtagtgcacgtcctgcgtggtgtccttg 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1744 atctgcgagatgcactgcgcccggaagttctcgtagtgcacgtcctgcgtggtgtccttg 1685 Query: 485 aggtcctgcatgtgcgtggatatcaagaaggtgcgcagcttgatgaagtcgctgtgctcc 544 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1684 aggtcctgcatgtgcgtggatatcaagaaggtgcgcagcttgatgaagtcgctgtgctcc 1625 Query: 545 ggatcctccacgtttaccacgccccacggatactggcgccctcggacct 593 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1624 ggatcctccacgtttaccacgccccacggatactggcgccctcggacct 1576 >CG9699-RB feature: mRNA loc=X:complement(16415231..16416431,16416528..16416930, 16417330..16417789,16425063..16425391, 16425971..16426187);ID=FBan0009699;gene_id=FBgn0030772;ge ne_sym=CG9699;sym=CG9699;scaffold=AE003503;len=2610 Length = 2610 Score = 1049 bits (529), Expect = 0.0 Identities = 529/529 (100%) Strand = Plus / Minus Query: 65 ttaaaaagtctgtgctagcttataaacaaagtcgatttggttgcagctgctccaggattt 124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1813 ttaaaaagtctgtgctagcttataaacaaagtcgatttggttgcagctgctccaggattt 1754 Query: 125 ctctgggtcaccatataagtcctatatagtaggtagatgcatatatggcggtgcaaaatt 184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1753 ctctgggtcaccatataagtcctatatagtaggtagatgcatatatggcggtgcaaaatt 1694 Query: 185 gaacacgttcccatttccgttccctagacgtcgatcacgctgtcattcttcttcatctcc 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1693 gaacacgttcccatttccgttccctagacgtcgatcacgctgtcattcttcttcatctcc 1634 Query: 245 atgagatgggtctgcttgagcttctcctgcatctgggtgagcatgtcctgcatcctcctt 304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1633 atgagatgggtctgcttgagcttctcctgcatctgggtgagcatgtcctgcatcctcctt 1574 Query: 305 atctcctcgtccttttgcaggagcagcctgtccgtctccgagatggccgcgtcgaatcca 364 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1573 atctcctcgtccttttgcaggagcagcctgtccgtctccgagatggccgcgtcgaatcca 1514 Query: 365 ttggtcgagctaatcgagtcccgcttcaacttgccgcgctcacgcagcgcgtgctgcgaa 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1513 ttggtcgagctaatcgagtcccgcttcaacttgccgcgctcacgcagcgcgtgctgcgaa 1454 Query: 425 atctgcgagatgcactgcgcccggaagttctcgtagtgcacgtcctgcgtggtgtccttg 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1453 atctgcgagatgcactgcgcccggaagttctcgtagtgcacgtcctgcgtggtgtccttg 1394 Query: 485 aggtcctgcatgtgcgtggatatcaagaaggtgcgcagcttgatgaagtcgctgtgctcc 544 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1393 aggtcctgcatgtgcgtggatatcaagaaggtgcgcagcttgatgaagtcgctgtgctcc 1334 Query: 545 ggatcctccacgtttaccacgccccacggatactggcgccctcggacct 593 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1333 ggatcctccacgtttaccacgccccacggatactggcgccctcggacct 1285 >CG9699-RA feature: mRNA loc=X:complement(16415231..16416431,16416528..16416930, 16417330..16417789,16425063..16425391, 16426138..16426193);ID=FBan0009699;gene_id=FBgn0030772;ge ne_sym=CG9699;sym=CG9699;scaffold=AE003503;len=2449 Length = 2449 Score = 1049 bits (529), Expect = 0.0 Identities = 529/529 (100%) Strand = Plus / Minus Query: 65 ttaaaaagtctgtgctagcttataaacaaagtcgatttggttgcagctgctccaggattt 124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1652 ttaaaaagtctgtgctagcttataaacaaagtcgatttggttgcagctgctccaggattt 1593 Query: 125 ctctgggtcaccatataagtcctatatagtaggtagatgcatatatggcggtgcaaaatt 184 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1592 ctctgggtcaccatataagtcctatatagtaggtagatgcatatatggcggtgcaaaatt 1533 Query: 185 gaacacgttcccatttccgttccctagacgtcgatcacgctgtcattcttcttcatctcc 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1532 gaacacgttcccatttccgttccctagacgtcgatcacgctgtcattcttcttcatctcc 1473 Query: 245 atgagatgggtctgcttgagcttctcctgcatctgggtgagcatgtcctgcatcctcctt 304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1472 atgagatgggtctgcttgagcttctcctgcatctgggtgagcatgtcctgcatcctcctt 1413 Query: 305 atctcctcgtccttttgcaggagcagcctgtccgtctccgagatggccgcgtcgaatcca 364 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1412 atctcctcgtccttttgcaggagcagcctgtccgtctccgagatggccgcgtcgaatcca 1353 Query: 365 ttggtcgagctaatcgagtcccgcttcaacttgccgcgctcacgcagcgcgtgctgcgaa 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1352 ttggtcgagctaatcgagtcccgcttcaacttgccgcgctcacgcagcgcgtgctgcgaa 1293 Query: 425 atctgcgagatgcactgcgcccggaagttctcgtagtgcacgtcctgcgtggtgtccttg 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1292 atctgcgagatgcactgcgcccggaagttctcgtagtgcacgtcctgcgtggtgtccttg 1233 Query: 485 aggtcctgcatgtgcgtggatatcaagaaggtgcgcagcttgatgaagtcgctgtgctcc 544 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1232 aggtcctgcatgtgcgtggatatcaagaaggtgcgcagcttgatgaagtcgctgtgctcc 1173 Query: 545 ggatcctccacgtttaccacgccccacggatactggcgccctcggacct 593 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1172 ggatcctccacgtttaccacgccccacggatactggcgccctcggacct 1124 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,850 Number of Sequences: 18737 Number of extensions: 15850 Number of successful extensions: 430 Number of sequences better than 1.0e-100: 7 Number of HSP's better than 0.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 416 Number of HSP's gapped (non-prelim): 14 length of query: 593 length of database: 41,270,998 effective HSP length: 17 effective length of query: 576 effective length of database: 40,952,469 effective search space: 23588622144 effective search space used: 23588622144 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI238971|AI238971 GH15129.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH15129 5 similar to CG4523: FBan0004523 'protein kinase' located on: X 6C7-6C7;: 04/10/2001, mRNA sequence. (571 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG4523-RB feature: mRNA loc=X:join(6424224..6424450,6424595..642... 1124 0.0 CG4523-RA feature: mRNA loc=X:join(6424224..6424450,6424509..642... 1124 0.0 >CG4523-RB feature: mRNA loc=X:join(6424224..6424450,6424595..6424837, 6424894..6425097,6425162..6425947,6426011..6427024, 6427089..6427394);ID=FBan0004523;gene_id=FBgn0029891;gene _sym=CG4523;sym=CG4523;scaffold=AE003438;len=2780 Length = 2780 Score = 1124 bits (567), Expect = 0.0 Identities = 570/571 (99%) Strand = Plus / Minus Query: 1 cggcgggcaagcatcgcccattggcggcaattggtcctgtcggtaatcgctgttcctcag 60 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2330 cggcgggcaagcatcgctcattggcggcaattggtcctgtcggtaatcgctgttcctcag 2271 Query: 61 cgaaagcgtcatctcaccgcgttcgcgcgccatcccaccgctgctcgaatagaacggatt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2270 cgaaagcgtcatctcaccgcgttcgcgcgccatcccaccgctgctcgaatagaacggatt 2211 Query: 121 gcggttgccaaagatttcgtaagccagggcaccgcaagcccacagatcggccttgccata 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2210 gcggttgccaaagatttcgtaagccagggcaccgcaagcccacagatcggccttgccata 2151 Query: 181 attgagtacggcaaacggaccgggcatcgtattgaagatctctggcgccatcaacgccgc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2150 attgagtacggcaaacggaccgggcatcgtattgaagatctctggcgccatcaacgccgc 2091 Query: 241 attgccgcccttgtcgacgtcgtgcgaaacgtacggcaggcgcaggccatgcaccttgtc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2090 attgccgcccttgtcgacgtcgtgcgaaacgtacggcaggcgcaggccatgcaccttgtc 2031 Query: 301 cgccagacaacagccaaagtcggagagcactagcaccggcgccgcatcgtcctgcagctc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2030 cgccagacaacagccaaagtcggagagcactagcaccggcgccgcatcgtcctgcagctc 1971 Query: 361 gattagcacattatcagactttaggtcacgatgggcaacgccgtgacggctcaaatggtt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1970 gattagcacattatcagactttaggtcacgatgggcaacgccgtgacggctcaaatggtt 1911 Query: 421 gacagcctcgagcatttgagccagcagcaggatgcgattgcgcgtgctcagatcctggct 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1910 gacagcctcgagcatttgagccagcagcaggatgcgattgcgcgtgctcagatcctggct 1851 Query: 481 atcgagcaggccgcgaagactgtgatcgtagcgtttcatcagcagatacagcgacatatt 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1850 atcgagcaggccgcgaagactgtgatcgtagcgtttcatcagcagatacagcgacatatt 1791 Query: 541 gcggccatagccctgtggattgatgcgttgc 571 ||||||||||||||||||||||||||||||| Sbjct: 1790 gcggccatagccctgtggattgatgcgttgc 1760 >CG4523-RA feature: mRNA loc=X:join(6424224..6424450,6424509..6424837, 6424900..6425097,6425162..6425947,6426011..6427024, 6427089..6427394);ID=FBan0004523;gene_id=FBgn0029891;gene _sym=CG4523;sym=CG4523;scaffold=AE003438;len=2860 Length = 2860 Score = 1124 bits (567), Expect = 0.0 Identities = 570/571 (99%) Strand = Plus / Minus Query: 1 cggcgggcaagcatcgcccattggcggcaattggtcctgtcggtaatcgctgttcctcag 60 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2410 cggcgggcaagcatcgctcattggcggcaattggtcctgtcggtaatcgctgttcctcag 2351 Query: 61 cgaaagcgtcatctcaccgcgttcgcgcgccatcccaccgctgctcgaatagaacggatt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2350 cgaaagcgtcatctcaccgcgttcgcgcgccatcccaccgctgctcgaatagaacggatt 2291 Query: 121 gcggttgccaaagatttcgtaagccagggcaccgcaagcccacagatcggccttgccata 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2290 gcggttgccaaagatttcgtaagccagggcaccgcaagcccacagatcggccttgccata 2231 Query: 181 attgagtacggcaaacggaccgggcatcgtattgaagatctctggcgccatcaacgccgc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2230 attgagtacggcaaacggaccgggcatcgtattgaagatctctggcgccatcaacgccgc 2171 Query: 241 attgccgcccttgtcgacgtcgtgcgaaacgtacggcaggcgcaggccatgcaccttgtc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2170 attgccgcccttgtcgacgtcgtgcgaaacgtacggcaggcgcaggccatgcaccttgtc 2111 Query: 301 cgccagacaacagccaaagtcggagagcactagcaccggcgccgcatcgtcctgcagctc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2110 cgccagacaacagccaaagtcggagagcactagcaccggcgccgcatcgtcctgcagctc 2051 Query: 361 gattagcacattatcagactttaggtcacgatgggcaacgccgtgacggctcaaatggtt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2050 gattagcacattatcagactttaggtcacgatgggcaacgccgtgacggctcaaatggtt 1991 Query: 421 gacagcctcgagcatttgagccagcagcaggatgcgattgcgcgtgctcagatcctggct 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1990 gacagcctcgagcatttgagccagcagcaggatgcgattgcgcgtgctcagatcctggct 1931 Query: 481 atcgagcaggccgcgaagactgtgatcgtagcgtttcatcagcagatacagcgacatatt 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1930 atcgagcaggccgcgaagactgtgatcgtagcgtttcatcagcagatacagcgacatatt 1871 Query: 541 gcggccatagccctgtggattgatgcgttgc 571 ||||||||||||||||||||||||||||||| Sbjct: 1870 gcggccatagccctgtggattgatgcgttgc 1840 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,184 Number of Sequences: 18737 Number of extensions: 14184 Number of successful extensions: 324 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 322 Number of HSP's gapped (non-prelim): 2 length of query: 571 length of database: 41,270,998 effective HSP length: 17 effective length of query: 554 effective length of database: 40,952,469 effective search space: 22687667826 effective search space used: 22687667826 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI292461|AI292461 GH15369.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH15369 5prime similar to M21017: D.melanogaster 18S, 5.8S 2S and 28S rRNA genes, complete, and 18S rRNA gene, 5' end, clone pDm238, mRNA sequence. (382 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4456 Number of Sequences: 18737 Number of extensions: 4456 Number of successful extensions: 292 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 292 Number of HSP's gapped (non-prelim): 0 length of query: 382 length of database: 41,270,998 effective HSP length: 17 effective length of query: 365 effective length of database: 40,952,469 effective search space: 14947651185 effective search space used: 14947651185 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI292834|AI292834 GH15838.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH15838 5prime, mRNA sequence. (484 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG6195-RA feature: mRNA loc=3R:complement(15472658..15472870,154... 955 0.0 >CG6195-RA feature: mRNA loc=3R:complement(15472658..15472870,15472952..15473616, 15473670..15473870, 15473968..15474241);ID=FBan0006195;gene_id=FBgn0038723;g ene_sym=CG6195;sym=CG6195;scaffold=AE003727;len=1353 Length = 1353 Score = 955 bits (482), Expect = 0.0 Identities = 482/482 (100%) Strand = Plus / Plus Query: 3 gcaccgctggtcaataaataaaagcgaacatttgtttaatttgaacttttgcatgctctg 62 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 127 gcaccgctggtcaataaataaaagcgaacatttgtttaatttgaacttttgcatgctctg 186 Query: 63 ccccgaactaagagagccaacagcatgggcatcctagagaagatcgcggagatcgagcga 122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 187 ccccgaactaagagagccaacagcatgggcatcctagagaagatcgcggagatcgagcga 246 Query: 123 gagatcgcgcggacgcagaagaacaaagccaccgaataccatctgggcctgctgaaggcc 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 247 gagatcgcgcggacgcagaagaacaaagccaccgaataccatctgggcctgctgaaggcc 306 Query: 183 aagttggccaagtatcgctcccagctgctggagccatccaagaagggcgaaaagggcgac 242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 307 aagttggccaagtatcgctcccagctgctggagccatccaagaagggcgaaaagggcgac 366 Query: 243 ggatttgatgtgctcaagagcggcgacgcccgggtggccctcattggctttccctccgtg 302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 367 ggatttgatgtgctcaagagcggcgacgcccgggtggccctcattggctttccctccgtg 426 Query: 303 gggaagtccacaatgttgtccactttgaccaaaacggaatcggaggcggcaaactatgag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 427 gggaagtccacaatgttgtccactttgaccaaaacggaatcggaggcggcaaactatgag 486 Query: 363 ttcaccactttgacctgcattccgggtgtcattgagtatcagggtgccaatatccagttg 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 487 ttcaccactttgacctgcattccgggtgtcattgagtatcagggtgccaatatccagttg 546 Query: 423 ctggatctgcccggaatcatcgagggcgctgcccagggcaaggggcgtggtcgtcaggtc 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 547 ctggatctgcccggaatcatcgagggcgctgcccagggcaaggggcgtggtcgtcaggtc 606 Query: 483 at 484 || Sbjct: 607 at 608 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,790 Number of Sequences: 18737 Number of extensions: 14790 Number of successful extensions: 423 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 422 Number of HSP's gapped (non-prelim): 1 length of query: 484 length of database: 41,270,998 effective HSP length: 17 effective length of query: 467 effective length of database: 40,952,469 effective search space: 19124803023 effective search space used: 19124803023 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI293153|AI293153 GH16259.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH16259 5prime similar to K01581: d.melanogaster 28s rrna gene, clone pdm238, mRNA sequence. (641 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8544 Number of Sequences: 18737 Number of extensions: 8544 Number of successful extensions: 153 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 153 Number of HSP's gapped (non-prelim): 0 length of query: 641 length of database: 41,270,998 effective HSP length: 17 effective length of query: 624 effective length of database: 40,952,469 effective search space: 25554340656 effective search space used: 25554340656 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI293286|AI293286 GH16447.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH16447 5, mRNA sequence. (612 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31003-RA feature: mRNA loc=3R:27187515..27189155;ID=FBan003100... 1148 0.0 >CG31003-RA feature: mRNA loc=3R:27187515..27189155;ID=FBan0031003;gene_id=FBgn005 1003;gene_sym=CG31003;sym=CG31003;scaffold=AE003778;len= 1641 Length = 1641 Score = 1148 bits (579), Expect = 0.0 Identities = 602/612 (98%) Strand = Plus / Plus Query: 1 gcagttccacacgcatacgcacaannnnnnnaaattttgtttgatattttaaacacatga 60 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 12 gcagttccacacgcatacgcacaatttttttaaattttgtttgatattttaaacacatga 71 Query: 61 aatctcgtggataaccaaagtcatactcatactcataccgacatactcaggaatctcaga 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 72 aatctcgtggataaccaaagtcatactcatactcataccgacatactcaggaatctcaga 131 Query: 121 tcagatggcttcccagagtaagaacagtgggttgaccaacaaggtgaccacggtggtggc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 132 tcagatggcttcccagagtaagaacagtgggttgaccaacaaggtgaccacggtggtggc 191 Query: 181 caccaatgccttcggcgctgatgtgatgagcgagatcagctacacggacgcgaaagttgt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 192 caccaatgccttcggcgctgatgtgatgagcgagatcagctacacggacgcgaaagttgt 251 Query: 241 gggcaatggcagcttcggcgtggtcttccaggccaaaatggtgcccagcaacgaaatggt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 252 gggcaatggcagcttcggcgtggtcttccaggccaaaatggtgcccagcaacgaaatggt 311 Query: 301 ggccataaagaaggtcctgcaggatcggcgcttcaagaatcgggaactgcaaatcatgcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 312 ggccataaagaaggtcctgcaggatcggcgcttcaagaatcgggaactgcaaatcatgcg 371 Query: 361 caagctgcgccacgataacatcataactctcaagtggttcttcttttcaagtggcgagaa 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 372 caagctgcgccacgataacatcataactctcaagtggttcttcttttcaagtggcgagaa 431 Query: 421 aagggacgaggtctatctgaacctggtcatggggttcttgccggagacgctgtataaagt 480 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 432 aagggacgaggtctatctgaacctggtcatggagttcttgccggagacgctgtataaagt 491 Query: 481 ggagcgacagtacgcaagggcaaagcaaaccttgccagttaactttgtccgactttacat 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 492 ggagcgacagtacgcaagggcaaagcaaaccttgccagttaactttgtccgactttacat 551 Query: 541 gtaccagctgctgaggagcatgggatatctccacagcttgggtttttgtcacagggacat 600 |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct: 552 gtaccagctgctgaggagcatgggatatctccacagcttgggattctgtcacagggacat 611 Query: 601 caagccgcagaa 612 |||||||||||| Sbjct: 612 caagccgcagaa 623 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,240 Number of Sequences: 18737 Number of extensions: 15240 Number of successful extensions: 408 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 406 Number of HSP's gapped (non-prelim): 1 length of query: 612 length of database: 41,270,998 effective HSP length: 17 effective length of query: 595 effective length of database: 40,952,469 effective search space: 24366719055 effective search space used: 24366719055 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI294233|AI294233 LP07554.5prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP07554 5prime, mRNA sequence. (660 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,260 Number of Sequences: 18737 Number of extensions: 13260 Number of successful extensions: 322 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 322 Number of HSP's gapped (non-prelim): 0 length of query: 660 length of database: 41,270,998 effective HSP length: 17 effective length of query: 643 effective length of database: 40,952,469 effective search space: 26332437567 effective search space used: 26332437567 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI386606|AI386606 GH16741.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH16741 5prime, mRNA sequence. (480 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,539 Number of Sequences: 18737 Number of extensions: 11539 Number of successful extensions: 285 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 285 Number of HSP's gapped (non-prelim): 0 length of query: 480 length of database: 41,270,998 effective HSP length: 17 effective length of query: 463 effective length of database: 40,952,469 effective search space: 18960993147 effective search space used: 18960993147 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI386941|AI386941 GH17330.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH17330 5prime, mRNA sequence. (458 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6703 Number of Sequences: 18737 Number of extensions: 6703 Number of successful extensions: 133 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 133 Number of HSP's gapped (non-prelim): 0 length of query: 458 length of database: 41,270,998 effective HSP length: 17 effective length of query: 441 effective length of database: 40,952,469 effective search space: 18060038829 effective search space used: 18060038829 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI387468|AI387468 GH18008.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH18008 5 similar to CG7560: FBan0007560 'enzyme' located on: 3L 68C2-68C2;: 04/10/2001, mRNA sequence. (654 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG7560-RA feature: mRNA loc=3L:join(11382682..11383221,11383286.... 1296 0.0 >CG7560-RA feature: mRNA loc=3L:join(11382682..11383221,11383286..11383386, 11383454..11383927);ID=FBan0007560;gene_id=FBgn0036157;g ene_sym=CG7560;sym=CG7560;scaffold=AE003545;len=1115 Length = 1115 Score = 1296 bits (654), Expect = 0.0 Identities = 654/654 (100%) Strand = Plus / Plus Query: 1 atctgccgttgagcgagcgtggttccaaatcaatgcatgcgattcaagtgcccgccggtg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atctgccgttgagcgagcgtggttccaaatcaatgcatgcgattcaagtgcccgccggtg 60 Query: 61 gttcgtcgcctggtgctgcctcctacattccctgcgtgacctttgcccccgatcaaaatg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gttcgtcgcctggtgctgcctcctacattccctgcgtgacctttgcccccgatcaaaatg 120 Query: 121 aatccgtagtgacgaagcagcggataggaacgctcgtggcggagcgaacagcccaacatc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aatccgtagtgacgaagcagcggataggaacgctcgtggcggagcgaacagcccaacatc 180 Query: 181 gcctcttctacggcatcgaggtgatggccagcgatccgagtggccggccaacctgcctgg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 gcctcttctacggcatcgaggtgatggccagcgatccgagtggccggccaacctgcctgg 240 Query: 241 actttaatcacttcctgccgctcctgcccaccttcgtgagcttcgtttggctgagtcagc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 actttaatcacttcctgccgctcctgcccaccttcgtgagcttcgtttggctgagtcagc 300 Query: 301 ggtactgggacgtggagccagtgggtcaggtggagagccttcagatggcccaacacctgg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 ggtactgggacgtggagccagtgggtcaggtggagagccttcagatggcccaacacctgg 360 Query: 361 ccacacgcattcccgtgctgccccatgtgtccgcctatcgaatgagtaggcagcgactgg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 ccacacgcattcccgtgctgccccatgtgtccgcctatcgaatgagtaggcagcgactgg 420 Query: 421 atcagtttttggccctcaactttagcagtcttttggccgttcgaggggatcgagttcacg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 atcagtttttggccctcaactttagcagtcttttggccgttcgaggggatcgagttcacg 480 Query: 481 aggatcaggatttctcgattagctaccccatggtggagcaatcgatacggcagaggggtg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 aggatcaggatttctcgattagctaccccatggtggagcaatcgatacggcagaggggtg 540 Query: 541 aaacaatatcagtctgtgtgggtggatatccagagggatacactagtttaggcgacatac 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 aaacaatatcagtctgtgtgggtggatatccagagggatacactagtttaggcgacatac 600 Query: 601 cacaaaattcagctaagaacatggagtttctaaaggcaaagattgatgctggag 654 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 601 cacaaaattcagctaagaacatggagtttctaaaggcaaagattgatgctggag 654 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,366 Number of Sequences: 18737 Number of extensions: 14366 Number of successful extensions: 345 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 344 Number of HSP's gapped (non-prelim): 1 length of query: 654 length of database: 41,270,998 effective HSP length: 17 effective length of query: 637 effective length of database: 40,952,469 effective search space: 26086722753 effective search space used: 26086722753 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI387493|AI387493 GH18038.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH18038 5 similar to Tequila: FBan0004821 'endopeptidase' located on: 3L 66F4-66F4;: 04/10/2001, mRNA sequence. (592 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Tequila-RD feature: mRNA loc=3L:join(9033368..9033539,9033774..9... 850 0.0 Tequila-RB feature: mRNA loc=3L:join(9045910..9045977,9046034..9... 850 0.0 Tequila-RA feature: mRNA loc=3L:join(9033392..9033539,9033774..9... 850 0.0 >Tequila-RD feature: mRNA loc=3L:join(9033368..9033539,9033774..9034332, 9046559..9048658,9048729..9049120,9049178..9049333, 9049395..9050175,9050243..9050335,9050447..9050530, 9050592..9050835);ID=FBan0004821;gene_id=FBgn0023479;gene _sym=Tequila;sym=CG4821;scaffold=AE003553;len=4581 Length = 4581 Score = 850 bits (429), Expect = 0.0 Identities = 429/429 (100%) Strand = Plus / Plus Query: 164 atgaacatagtgctgacttccatattcgtcatccggagctacccaacccatttccactaa 223 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2493 atgaacatagtgctgacttccatattcgtcatccggagctacccaacccatttccactaa 2552 Query: 224 agaatgaaactccgcaacatcaggatctcaatgatgactgggatctgctacccaattcca 283 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2553 agaatgaaactccgcaacatcaggatctcaatgatgactgggatctgctacccaattcca 2612 Query: 284 atgctgaggaagtgactcccaaattagctacccgttcaagcttcaacacccaatgtgatt 343 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2613 atgctgaggaagtgactcccaaattagctacccgttcaagcttcaacacccaatgtgatt 2672 Query: 344 tcgattgcggcaacggccaatgcctgaagaaggaggagatttgcgatgggaagaaaaatt 403 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2673 tcgattgcggcaacggccaatgcctgaagaaggaggagatttgcgatgggaagaaaaatt 2732 Query: 404 gccccaatggcaaagatgaggctaactgcccgccatcggactacgaggtgcggctatcag 463 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2733 gccccaatggcaaagatgaggctaactgcccgccatcggactacgaggtgcggctatcag 2792 Query: 464 ggggcgagagtccaaacatgggccgtatcgaagtcaaggctaatggtcaatggggatatg 523 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2793 ggggcgagagtccaaacatgggccgtatcgaagtcaaggctaatggtcaatggggatatg 2852 Query: 524 tgtgtgatgacaagttcggtttgaaggatgcagatgtcgtttgccgagaacttggctttc 583 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2853 tgtgtgatgacaagttcggtttgaaggatgcagatgtcgtttgccgagaacttggctttc 2912 Query: 584 agatgggcg 592 ||||||||| Sbjct: 2913 agatgggcg 2921 >Tequila-RB feature: mRNA loc=3L:join(9045910..9045977,9046034..9046498, 9046559..9048658,9048729..9049120,9049178..9049333, 9049395..9050175,9050243..9050335,9050447..9050530, 9050592..9050831);ID=FBan0004821;gene_id=FBgn0023479;gene _sym=Tequila;sym=CG4821;scaffold=AE003553;len=4379 Length = 4379 Score = 850 bits (429), Expect = 0.0 Identities = 429/429 (100%) Strand = Plus / Plus Query: 164 atgaacatagtgctgacttccatattcgtcatccggagctacccaacccatttccactaa 223 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2295 atgaacatagtgctgacttccatattcgtcatccggagctacccaacccatttccactaa 2354 Query: 224 agaatgaaactccgcaacatcaggatctcaatgatgactgggatctgctacccaattcca 283 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2355 agaatgaaactccgcaacatcaggatctcaatgatgactgggatctgctacccaattcca 2414 Query: 284 atgctgaggaagtgactcccaaattagctacccgttcaagcttcaacacccaatgtgatt 343 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2415 atgctgaggaagtgactcccaaattagctacccgttcaagcttcaacacccaatgtgatt 2474 Query: 344 tcgattgcggcaacggccaatgcctgaagaaggaggagatttgcgatgggaagaaaaatt 403 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2475 tcgattgcggcaacggccaatgcctgaagaaggaggagatttgcgatgggaagaaaaatt 2534 Query: 404 gccccaatggcaaagatgaggctaactgcccgccatcggactacgaggtgcggctatcag 463 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2535 gccccaatggcaaagatgaggctaactgcccgccatcggactacgaggtgcggctatcag 2594 Query: 464 ggggcgagagtccaaacatgggccgtatcgaagtcaaggctaatggtcaatggggatatg 523 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2595 ggggcgagagtccaaacatgggccgtatcgaagtcaaggctaatggtcaatggggatatg 2654 Query: 524 tgtgtgatgacaagttcggtttgaaggatgcagatgtcgtttgccgagaacttggctttc 583 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2655 tgtgtgatgacaagttcggtttgaaggatgcagatgtcgtttgccgagaacttggctttc 2714 Query: 584 agatgggcg 592 ||||||||| Sbjct: 2715 agatgggcg 2723 >Tequila-RA feature: mRNA loc=3L:join(9033392..9033539,9033774..9034332, 9034382..9034576,9034730..9034975,9035029..9035505, 9035568..9035670,9043196..9043629,9043768..9044010, 9044075..9044539,9044598..9045977,9046034..9046498, 9046559..9048658,9048729..9049120,9049178..9049333, 9049395..9050175,9050243..9050335,9050447..9050530, 9050592..9050835);ID=FBan0004821;gene_id=FBgn0023479;gene _sym=Tequila;sym=CG4821;scaffold=AE003553;len=8565 Length = 8565 Score = 850 bits (429), Expect = 0.0 Identities = 429/429 (100%) Strand = Plus / Plus Query: 164 atgaacatagtgctgacttccatattcgtcatccggagctacccaacccatttccactaa 223 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6477 atgaacatagtgctgacttccatattcgtcatccggagctacccaacccatttccactaa 6536 Query: 224 agaatgaaactccgcaacatcaggatctcaatgatgactgggatctgctacccaattcca 283 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6537 agaatgaaactccgcaacatcaggatctcaatgatgactgggatctgctacccaattcca 6596 Query: 284 atgctgaggaagtgactcccaaattagctacccgttcaagcttcaacacccaatgtgatt 343 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6597 atgctgaggaagtgactcccaaattagctacccgttcaagcttcaacacccaatgtgatt 6656 Query: 344 tcgattgcggcaacggccaatgcctgaagaaggaggagatttgcgatgggaagaaaaatt 403 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6657 tcgattgcggcaacggccaatgcctgaagaaggaggagatttgcgatgggaagaaaaatt 6716 Query: 404 gccccaatggcaaagatgaggctaactgcccgccatcggactacgaggtgcggctatcag 463 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6717 gccccaatggcaaagatgaggctaactgcccgccatcggactacgaggtgcggctatcag 6776 Query: 464 ggggcgagagtccaaacatgggccgtatcgaagtcaaggctaatggtcaatggggatatg 523 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6777 ggggcgagagtccaaacatgggccgtatcgaagtcaaggctaatggtcaatggggatatg 6836 Query: 524 tgtgtgatgacaagttcggtttgaaggatgcagatgtcgtttgccgagaacttggctttc 583 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6837 tgtgtgatgacaagttcggtttgaaggatgcagatgtcgtttgccgagaacttggctttc 6896 Query: 584 agatgggcg 592 ||||||||| Sbjct: 6897 agatgggcg 6905 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,052 Number of Sequences: 18737 Number of extensions: 11052 Number of successful extensions: 282 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 276 Number of HSP's gapped (non-prelim): 6 length of query: 592 length of database: 41,270,998 effective HSP length: 17 effective length of query: 575 effective length of database: 40,952,469 effective search space: 23547669675 effective search space used: 23547669675 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI387537|AI387537 GH18088.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH18088 5 similar to CG5651: FBan0005651 'enzyme inhibitor' located on: 3L 66E5-66E5;: 04/10/2001, mRNA sequence. (645 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG5651-RA feature: mRNA loc=3L:complement(8930770..8931337,89313... 722 0.0 CG5651-RB feature: mRNA loc=3L:complement(8930770..8931337,89313... 628 e-179 CG30487-RA feature: mRNA loc=2R:complement(8002380..8003057);ID=... 502 e-141 >CG5651-RA feature: mRNA loc=3L:complement(8930770..8931337,8931395..8932111, 8932171..8932781,8932844..8933057, 8933367..8933464);ID=FBan0005651;gene_id=FBgn0035946;gen e_sym=CG5651;sym=CG5651;scaffold=AE003553;len=2208 Length = 2208 Score = 722 bits (364), Expect = 0.0 Identities = 364/364 (100%) Strand = Plus / Plus Query: 282 caagagcgtgcgttctgtctgttttacaacaatttcggccaagttcgcagcatgtcgcgc 341 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 49 caagagcgtgcgttctgtctgttttacaacaatttcggccaagttcgcagcatgtcgcgc 108 Query: 342 agaaaggagaacgaggaggtggacaagcagacgcgtattgccatcgtcagcgatgacaag 401 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 109 agaaaggagaacgaggaggtggacaagcagacgcgtattgccatcgtcagcgatgacaag 168 Query: 402 tgcaagcccaaacggtgtcggcaggagtgcaagaagacctgcccagtggtgcgcatgggc 461 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 169 tgcaagcccaaacggtgtcggcaggagtgcaagaagacctgcccagtggtgcgcatgggc 228 Query: 462 aagctctgcatcgaggtgacgcccacgtccaagatagcctcgttgtccgaggagctgtgc 521 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 229 aagctctgcatcgaggtgacgcccacgtccaagatagcctcgttgtccgaggagctgtgc 288 Query: 522 atcggttgcggtatttgcgtcaagaaatgccccttcgaggccatcacaatcatcaacttg 581 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 289 atcggttgcggtatttgcgtcaagaaatgccccttcgaggccatcacaatcatcaacttg 348 Query: 582 cccagcaatctggagaagcacacaacgcatcgatacagcaagaactccttcaagctgcat 641 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 349 cccagcaatctggagaagcacacaacgcatcgatacagcaagaactccttcaagctgcat 408 Query: 642 cgtc 645 |||| Sbjct: 409 cgtc 412 >CG5651-RB feature: mRNA loc=3L:complement(8930770..8931337,8931395..8932111, 8932171..8932781, 8932844..8933127);ID=FBan0005651;gene_id=FBgn0035946;gen e_sym=CG5651;sym=CG5651;scaffold=AE003553;len=2180 Length = 2180 Score = 628 bits (317), Expect = e-179 Identities = 317/317 (100%) Strand = Plus / Plus Query: 329 cagcatgtcgcgcagaaaggagaacgaggaggtggacaagcagacgcgtattgccatcgt 388 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 68 cagcatgtcgcgcagaaaggagaacgaggaggtggacaagcagacgcgtattgccatcgt 127 Query: 389 cagcgatgacaagtgcaagcccaaacggtgtcggcaggagtgcaagaagacctgcccagt 448 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 128 cagcgatgacaagtgcaagcccaaacggtgtcggcaggagtgcaagaagacctgcccagt 187 Query: 449 ggtgcgcatgggcaagctctgcatcgaggtgacgcccacgtccaagatagcctcgttgtc 508 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 188 ggtgcgcatgggcaagctctgcatcgaggtgacgcccacgtccaagatagcctcgttgtc 247 Query: 509 cgaggagctgtgcatcggttgcggtatttgcgtcaagaaatgccccttcgaggccatcac 568 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 248 cgaggagctgtgcatcggttgcggtatttgcgtcaagaaatgccccttcgaggccatcac 307 Query: 569 aatcatcaacttgcccagcaatctggagaagcacacaacgcatcgatacagcaagaactc 628 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 308 aatcatcaacttgcccagcaatctggagaagcacacaacgcatcgatacagcaagaactc 367 Query: 629 cttcaagctgcatcgtc 645 ||||||||||||||||| Sbjct: 368 cttcaagctgcatcgtc 384 >CG30487-RA feature: mRNA loc=2R:complement(8002380..8003057);ID=FBan0030487;gene_ id=FBgn0050487;gene_sym=CG30487;sym=CG30487;scaffold=AE0 03820;len=678 Length = 678 Score = 502 bits (253), Expect = e-141 Identities = 253/253 (100%) Strand = Plus / Plus Query: 1 gaaacgccataaacttgacggtcccaagggtggacaaactacaggatctggctaaatcga 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 426 gaaacgccataaacttgacggtcccaagggtggacaaactacaggatctggctaaatcga 485 Query: 61 tcccaacggatcccgatacagtctacctgacctgtcaatgtgatgatattttctctaatg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 486 tcccaacggatcccgatacagtctacctgacctgtcaatgtgatgatattttctctaatg 545 Query: 121 gaggcacagaagctccgactcaaagccccgacgaagttaatttcgaagagctgtccagct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 546 gaggcacagaagctccgactcaaagccccgacgaagttaatttcgaagagctgtccagct 605 Query: 181 acttcgaaaatatgctcaacatacccaagaatcttccgctcagcgctgaaataatgtata 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 606 acttcgaaaatatgctcaacatacccaagaatcttccgctcagcgctgaaataatgtata 665 Query: 241 cttaatgattgga 253 ||||||||||||| Sbjct: 666 cttaatgattgga 678 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,777 Number of Sequences: 18737 Number of extensions: 15777 Number of successful extensions: 415 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 412 Number of HSP's gapped (non-prelim): 3 length of query: 645 length of database: 41,270,998 effective HSP length: 17 effective length of query: 628 effective length of database: 40,952,469 effective search space: 25718150532 effective search space used: 25718150532 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI387853|AI387853 GH18528.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH18528 5, mRNA sequence. (673 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value R-RA feature: mRNA loc=3L:complement(1839743..1842305,1842690..1... 906 0.0 >R-RA feature: mRNA loc=3L:complement(1839743..1842305, 1842690..1842863);ID=FBan0001956;gene_id=FBgn0004636;gene _sym=R;sym=CG1956;scaffold=AE003473;len=2737 Length = 2737 Score = 906 bits (457), Expect = 0.0 Identities = 457/457 (100%) Strand = Plus / Plus Query: 217 ctacatatttaaatatatttgtcgttcgtttttgagccgttttttaaattatgcaacaag 276 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1505 ctacatatttaaatatatttgtcgttcgtttttgagccgttttttaaattatgcaacaag 1564 Query: 277 tgaaacattcgtaaactaaaacattcgtatttattgattcttttcgattgtactctacac 336 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1565 tgaaacattcgtaaactaaaacattcgtatttattgattcttttcgattgtactctacac 1624 Query: 337 atctacaactacaactacttatacacgcgaaagcccaaccaacaacaagtatatctttaa 396 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1625 atctacaactacaactacttatacacgcgaaagcccaaccaacaacaagtatatctttaa 1684 Query: 397 atagaaccgaaaacaacattcgaaacacaaatcaaattaagctaaactaaattgtacgcc 456 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1685 atagaaccgaaaacaacattcgaaacacaaatcaaattaagctaaactaaattgtacgcc 1744 Query: 457 taaaagataaagataacaaattccacgagagaaatgagcaaataaatcgagaaaggaaat 516 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1745 taaaagataaagataacaaattccacgagagaaatgagcaaataaatcgagaaaggaaat 1804 Query: 517 gaatcatgaataaggaacatattttataaaaatattgtatgcaaatgatgtcaaaatgtt 576 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1805 gaatcatgaataaggaacatattttataaaaatattgtatgcaaatgatgtcaaaatgtt 1864 Query: 577 gcaaacaaccagaagtaatgagccccctcccccttagaaattagtttaaaacaaatttac 636 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1865 gcaaacaaccagaagtaatgagccccctcccccttagaaattagtttaaaacaaatttac 1924 Query: 637 aattaattgtttaccacgatcagttgcatcaaatctg 673 ||||||||||||||||||||||||||||||||||||| Sbjct: 1925 aattaattgtttaccacgatcagttgcatcaaatctg 1961 Score = 369 bits (186), Expect = e-101 Identities = 186/186 (100%) Strand = Plus / Plus Query: 18 cgttctcgtttcgttttggatccgatggcaattgtcgaattgaaataaccaatctactat 77 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1306 cgttctcgtttcgttttggatccgatggcaattgtcgaattgaaataaccaatctactat 1365 Query: 78 atacaagcaaaacttaaactgacaaatgtttttaactgtttcaagtttttgtaattatta 137 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1366 atacaagcaaaacttaaactgacaaatgtttttaactgtttcaagtttttgtaattatta 1425 Query: 138 ccatttactactattatgattgtactatttttcgctgattaaccattaattcatatgggg 197 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1426 ccatttactactattatgattgtactatttttcgctgattaaccattaattcatatgggg 1485 Query: 198 aattat 203 |||||| Sbjct: 1486 aattat 1491 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 17,902 Number of Sequences: 18737 Number of extensions: 17902 Number of successful extensions: 547 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 545 Number of HSP's gapped (non-prelim): 2 length of query: 673 length of database: 41,270,998 effective HSP length: 17 effective length of query: 656 effective length of database: 40,952,469 effective search space: 26864819664 effective search space used: 26864819664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI388218|AI388218 GH19041.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH19041 5prime, mRNA sequence. (554 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG10249-RC feature: mRNA loc=2R:complement(9965201..9965866,9965... 1098 0.0 CG10249-RB feature: mRNA loc=2R:complement(9965201..9965866,9965... 1098 0.0 CG10249-RA feature: mRNA loc=2R:complement(9965201..9965866,9965... 1098 0.0 >CG10249-RC feature: mRNA loc=2R:complement(9965201..9965866,9965929..9966129, 9966237..9966449,9966511..9966757,9966862..9967290, 9967799..9969177,9969240..9969679,9973950..9974442, 9974830..9975098, 9975732..9975943);ID=FBan0010249;gene_id=FBgn0027596;gene _sym=CG10249;sym=CG10249;scaffold=AE003812;len=4549 Length = 4549 Score = 1098 bits (554), Expect = 0.0 Identities = 554/554 (100%) Strand = Plus / Plus Query: 1 ccattgcctgtgcagccaactactgtgattcctgcaaggaggccatccaggatctggcca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2529 ccattgcctgtgcagccaactactgtgattcctgcaaggaggccatccaggatctggcca 2588 Query: 61 ggggtttctcgaaggccagtcccacggccaccagaacgggaggagcagtgcgacgctcca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2589 ggggtttctcgaaggccagtcccacggccaccagaacgggaggagcagtgcgacgctcca 2648 Query: 121 cgtcggcggactcgagaattccgcgacccaagcacctctccagtccgagtccggtgcgca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2649 cgtcggcggactcgagaattccgcgacccaagcacctctccagtccgagtccggtgcgca 2708 Query: 181 aagagttcatgcggcagaacacctacacgctggccacgccttcgccaactccaagtccac 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2709 aagagttcatgcggcagaacacctacacgctggccacgccttcgccaactccaagtccac 2768 Query: 241 aggtggaaaggaaggcgcgattgagctccctgcaagagaagccaccgtcagtgtccagtt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2769 aggtggaaaggaaggcgcgattgagctccctgcaagagaagccaccgtcagtgtccagtt 2828 Query: 301 tccaggcatcggagccattgcccgaatcccaaagcttcatccgtcaaccgcagaaggatt 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2829 tccaggcatcggagccattgcccgaatcccaaagcttcatccgtcaaccgcagaaggatt 2888 Query: 361 cattggatctgagtctcttgggcgaggatgagttgatagtccgagaggagaagcgggtga 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2889 cattggatctgagtctcttgggcgaggatgagttgatagtccgagaggagaagcgggtga 2948 Query: 421 gcatcagctggtcgcgcgatgcctcaccagctccgctgatgacctcctcgggcactacca 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2949 gcatcagctggtcgcgcgatgcctcaccagctccgctgatgacctcctcgggcactacca 3008 Query: 481 agtccgaatcaccggaacaggagccggcaatgagctcctcaagtgattcaagtccgccca 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3009 agtccgaatcaccggaacaggagccggcaatgagctcctcaagtgattcaagtccgccca 3068 Query: 541 tcgacgtccagatt 554 |||||||||||||| Sbjct: 3069 tcgacgtccagatt 3082 >CG10249-RB feature: mRNA loc=2R:complement(9965201..9965866,9965929..9966129, 9966237..9966449,9966511..9966757,9966862..9967290, 9967799..9969177,9969240..9969679, 9969744..9969807);ID=FBan0010249;gene_id=FBgn0027596;gene _sym=CG10249;sym=CG10249;scaffold=AE003812;len=3639 Length = 3639 Score = 1098 bits (554), Expect = 0.0 Identities = 554/554 (100%) Strand = Plus / Plus Query: 1 ccattgcctgtgcagccaactactgtgattcctgcaaggaggccatccaggatctggcca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1619 ccattgcctgtgcagccaactactgtgattcctgcaaggaggccatccaggatctggcca 1678 Query: 61 ggggtttctcgaaggccagtcccacggccaccagaacgggaggagcagtgcgacgctcca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1679 ggggtttctcgaaggccagtcccacggccaccagaacgggaggagcagtgcgacgctcca 1738 Query: 121 cgtcggcggactcgagaattccgcgacccaagcacctctccagtccgagtccggtgcgca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1739 cgtcggcggactcgagaattccgcgacccaagcacctctccagtccgagtccggtgcgca 1798 Query: 181 aagagttcatgcggcagaacacctacacgctggccacgccttcgccaactccaagtccac 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1799 aagagttcatgcggcagaacacctacacgctggccacgccttcgccaactccaagtccac 1858 Query: 241 aggtggaaaggaaggcgcgattgagctccctgcaagagaagccaccgtcagtgtccagtt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1859 aggtggaaaggaaggcgcgattgagctccctgcaagagaagccaccgtcagtgtccagtt 1918 Query: 301 tccaggcatcggagccattgcccgaatcccaaagcttcatccgtcaaccgcagaaggatt 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1919 tccaggcatcggagccattgcccgaatcccaaagcttcatccgtcaaccgcagaaggatt 1978 Query: 361 cattggatctgagtctcttgggcgaggatgagttgatagtccgagaggagaagcgggtga 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1979 cattggatctgagtctcttgggcgaggatgagttgatagtccgagaggagaagcgggtga 2038 Query: 421 gcatcagctggtcgcgcgatgcctcaccagctccgctgatgacctcctcgggcactacca 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2039 gcatcagctggtcgcgcgatgcctcaccagctccgctgatgacctcctcgggcactacca 2098 Query: 481 agtccgaatcaccggaacaggagccggcaatgagctcctcaagtgattcaagtccgccca 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2099 agtccgaatcaccggaacaggagccggcaatgagctcctcaagtgattcaagtccgccca 2158 Query: 541 tcgacgtccagatt 554 |||||||||||||| Sbjct: 2159 tcgacgtccagatt 2172 >CG10249-RA feature: mRNA loc=2R:complement(9965201..9965866,9965929..9966129, 9966237..9966449,9966511..9966757,9966862..9967290, 9967799..9969177,9969240..9969679, 9973950..9974595);ID=FBan0010249;gene_id=FBgn0027596;gene _sym=CG10249;sym=CG10249;scaffold=AE003812;len=4221 Length = 4221 Score = 1098 bits (554), Expect = 0.0 Identities = 554/554 (100%) Strand = Plus / Plus Query: 1 ccattgcctgtgcagccaactactgtgattcctgcaaggaggccatccaggatctggcca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2201 ccattgcctgtgcagccaactactgtgattcctgcaaggaggccatccaggatctggcca 2260 Query: 61 ggggtttctcgaaggccagtcccacggccaccagaacgggaggagcagtgcgacgctcca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2261 ggggtttctcgaaggccagtcccacggccaccagaacgggaggagcagtgcgacgctcca 2320 Query: 121 cgtcggcggactcgagaattccgcgacccaagcacctctccagtccgagtccggtgcgca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2321 cgtcggcggactcgagaattccgcgacccaagcacctctccagtccgagtccggtgcgca 2380 Query: 181 aagagttcatgcggcagaacacctacacgctggccacgccttcgccaactccaagtccac 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2381 aagagttcatgcggcagaacacctacacgctggccacgccttcgccaactccaagtccac 2440 Query: 241 aggtggaaaggaaggcgcgattgagctccctgcaagagaagccaccgtcagtgtccagtt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2441 aggtggaaaggaaggcgcgattgagctccctgcaagagaagccaccgtcagtgtccagtt 2500 Query: 301 tccaggcatcggagccattgcccgaatcccaaagcttcatccgtcaaccgcagaaggatt 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2501 tccaggcatcggagccattgcccgaatcccaaagcttcatccgtcaaccgcagaaggatt 2560 Query: 361 cattggatctgagtctcttgggcgaggatgagttgatagtccgagaggagaagcgggtga 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2561 cattggatctgagtctcttgggcgaggatgagttgatagtccgagaggagaagcgggtga 2620 Query: 421 gcatcagctggtcgcgcgatgcctcaccagctccgctgatgacctcctcgggcactacca 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2621 gcatcagctggtcgcgcgatgcctcaccagctccgctgatgacctcctcgggcactacca 2680 Query: 481 agtccgaatcaccggaacaggagccggcaatgagctcctcaagtgattcaagtccgccca 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2681 agtccgaatcaccggaacaggagccggcaatgagctcctcaagtgattcaagtccgccca 2740 Query: 541 tcgacgtccagatt 554 |||||||||||||| Sbjct: 2741 tcgacgtccagatt 2754 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,462 Number of Sequences: 18737 Number of extensions: 14462 Number of successful extensions: 317 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 314 Number of HSP's gapped (non-prelim): 3 length of query: 554 length of database: 41,270,998 effective HSP length: 17 effective length of query: 537 effective length of database: 40,952,469 effective search space: 21991475853 effective search space used: 21991475853 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI388382|AI388382 GH19274.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH19274 5 similar to CG9130: FBan0009130 located on: 3L 61F4-61F4;: 04/10/2001, mRNA sequence. (482 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32332-RE feature: mRNA loc=3L:join(1232641..1233861,1233933..1... 955 0.0 CG32332-RD feature: mRNA loc=3L:join(1232641..1233861,1233933..1... 955 0.0 CG32332-RC feature: mRNA loc=3L:join(1232641..1233861,1233933..1... 955 0.0 CG32332-RB feature: mRNA loc=3L:join(1232641..1233861,1233933..1... 955 0.0 >CG32332-RE feature: mRNA loc=3L:join(1232641..1233861,1233933..1234352, 1234705..1235673, 1236117..1236617);ID=FBan0032332;gene_id=FBgn0052332;gene _sym=CG32332;sym=CG32332;scaffold=AE003471;len=3111 Length = 3111 Score = 955 bits (482), Expect = 0.0 Identities = 482/482 (100%) Strand = Plus / Plus Query: 1 agaatcctgactgggaagacgccatgctggggcacatcgcccagctgcccaagatgaagg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 574 agaatcctgactgggaagacgccatgctggggcacatcgcccagctgcccaagatgaagg 633 Query: 61 gtcccaccagcaagggcctcctggacaactgtgcctgctacgagaagctgaacgaacgtc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 634 gtcccaccagcaagggcctcctggacaactgtgcctgctacgagaagctgaacgaacgtc 693 Query: 121 acgagcagtggtgtcccacatcggagttgtccaagcgactgctgcccctcttcaatctct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 694 acgagcagtggtgtcccacatcggagttgtccaagcgactgctgcccctcttcaatctct 753 Query: 181 gcaagatgcagactggcaacatagtgctgatccttagattggtgtgcaatggtccgacca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 754 gcaagatgcagactggcaacatagtgctgatccttagattggtgtgcaatggtccgacca 813 Query: 241 ttgtgtccacgttccccttcagcaaggtctgctcccgcaatcccaagtgcccggagccct 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 814 ttgtgtccacgttccccttcagcaaggtctgctcccgcaatcccaagtgcccggagccct 873 Query: 301 gctgcggtccttgtggcccctgtggtccctgcggcccctgcccaccacctcccagctgcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 874 gctgcggtccttgtggcccctgtggtccctgcggcccctgcccaccacctcccagctgcg 933 Query: 361 gctcgtgcccaccgcctcctagctgtggcccaccatgtcctccaccctgcgacccctgcg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 934 gctcgtgcccaccgcctcctagctgtggcccaccatgtcctccaccctgcgacccctgcg 993 Query: 421 atccgtgcgatccctgcagtccctgctgtggcggcggaactgccaccggcgggcccatgg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 994 atccgtgcgatccctgcagtccctgctgtggcggcggaactgccaccggcgggcccatgg 1053 Query: 481 at 482 || Sbjct: 1054 at 1055 >CG32332-RD feature: mRNA loc=3L:join(1232641..1233861,1233933..1234352, 1234705..1235673, 1236117..1236617);ID=FBan0032332;gene_id=FBgn0052332;gene _sym=CG32332;sym=CG32332;scaffold=AE003471;len=3111 Length = 3111 Score = 955 bits (482), Expect = 0.0 Identities = 482/482 (100%) Strand = Plus / Plus Query: 1 agaatcctgactgggaagacgccatgctggggcacatcgcccagctgcccaagatgaagg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 574 agaatcctgactgggaagacgccatgctggggcacatcgcccagctgcccaagatgaagg 633 Query: 61 gtcccaccagcaagggcctcctggacaactgtgcctgctacgagaagctgaacgaacgtc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 634 gtcccaccagcaagggcctcctggacaactgtgcctgctacgagaagctgaacgaacgtc 693 Query: 121 acgagcagtggtgtcccacatcggagttgtccaagcgactgctgcccctcttcaatctct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 694 acgagcagtggtgtcccacatcggagttgtccaagcgactgctgcccctcttcaatctct 753 Query: 181 gcaagatgcagactggcaacatagtgctgatccttagattggtgtgcaatggtccgacca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 754 gcaagatgcagactggcaacatagtgctgatccttagattggtgtgcaatggtccgacca 813 Query: 241 ttgtgtccacgttccccttcagcaaggtctgctcccgcaatcccaagtgcccggagccct 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 814 ttgtgtccacgttccccttcagcaaggtctgctcccgcaatcccaagtgcccggagccct 873 Query: 301 gctgcggtccttgtggcccctgtggtccctgcggcccctgcccaccacctcccagctgcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 874 gctgcggtccttgtggcccctgtggtccctgcggcccctgcccaccacctcccagctgcg 933 Query: 361 gctcgtgcccaccgcctcctagctgtggcccaccatgtcctccaccctgcgacccctgcg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 934 gctcgtgcccaccgcctcctagctgtggcccaccatgtcctccaccctgcgacccctgcg 993 Query: 421 atccgtgcgatccctgcagtccctgctgtggcggcggaactgccaccggcgggcccatgg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 994 atccgtgcgatccctgcagtccctgctgtggcggcggaactgccaccggcgggcccatgg 1053 Query: 481 at 482 || Sbjct: 1054 at 1055 >CG32332-RC feature: mRNA loc=3L:join(1232641..1233861,1233933..1234352, 1234705..1234953,1235027..1235673, 1236117..1236617);ID=FBan0032332;gene_id=FBgn0052332;gene _sym=CG32332;sym=CG32332;scaffold=AE003471;len=3038 Length = 3038 Score = 955 bits (482), Expect = 0.0 Identities = 482/482 (100%) Strand = Plus / Plus Query: 1 agaatcctgactgggaagacgccatgctggggcacatcgcccagctgcccaagatgaagg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 574 agaatcctgactgggaagacgccatgctggggcacatcgcccagctgcccaagatgaagg 633 Query: 61 gtcccaccagcaagggcctcctggacaactgtgcctgctacgagaagctgaacgaacgtc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 634 gtcccaccagcaagggcctcctggacaactgtgcctgctacgagaagctgaacgaacgtc 693 Query: 121 acgagcagtggtgtcccacatcggagttgtccaagcgactgctgcccctcttcaatctct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 694 acgagcagtggtgtcccacatcggagttgtccaagcgactgctgcccctcttcaatctct 753 Query: 181 gcaagatgcagactggcaacatagtgctgatccttagattggtgtgcaatggtccgacca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 754 gcaagatgcagactggcaacatagtgctgatccttagattggtgtgcaatggtccgacca 813 Query: 241 ttgtgtccacgttccccttcagcaaggtctgctcccgcaatcccaagtgcccggagccct 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 814 ttgtgtccacgttccccttcagcaaggtctgctcccgcaatcccaagtgcccggagccct 873 Query: 301 gctgcggtccttgtggcccctgtggtccctgcggcccctgcccaccacctcccagctgcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 874 gctgcggtccttgtggcccctgtggtccctgcggcccctgcccaccacctcccagctgcg 933 Query: 361 gctcgtgcccaccgcctcctagctgtggcccaccatgtcctccaccctgcgacccctgcg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 934 gctcgtgcccaccgcctcctagctgtggcccaccatgtcctccaccctgcgacccctgcg 993 Query: 421 atccgtgcgatccctgcagtccctgctgtggcggcggaactgccaccggcgggcccatgg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 994 atccgtgcgatccctgcagtccctgctgtggcggcggaactgccaccggcgggcccatgg 1053 Query: 481 at 482 || Sbjct: 1054 at 1055 >CG32332-RB feature: mRNA loc=3L:join(1232641..1233861,1233933..1234352, 1234705..1234953,1235027..1235673, 1236117..1236617);ID=FBan0032332;gene_id=FBgn0052332;gene _sym=CG32332;sym=CG32332;scaffold=AE003471;len=3038 Length = 3038 Score = 955 bits (482), Expect = 0.0 Identities = 482/482 (100%) Strand = Plus / Plus Query: 1 agaatcctgactgggaagacgccatgctggggcacatcgcccagctgcccaagatgaagg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 574 agaatcctgactgggaagacgccatgctggggcacatcgcccagctgcccaagatgaagg 633 Query: 61 gtcccaccagcaagggcctcctggacaactgtgcctgctacgagaagctgaacgaacgtc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 634 gtcccaccagcaagggcctcctggacaactgtgcctgctacgagaagctgaacgaacgtc 693 Query: 121 acgagcagtggtgtcccacatcggagttgtccaagcgactgctgcccctcttcaatctct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 694 acgagcagtggtgtcccacatcggagttgtccaagcgactgctgcccctcttcaatctct 753 Query: 181 gcaagatgcagactggcaacatagtgctgatccttagattggtgtgcaatggtccgacca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 754 gcaagatgcagactggcaacatagtgctgatccttagattggtgtgcaatggtccgacca 813 Query: 241 ttgtgtccacgttccccttcagcaaggtctgctcccgcaatcccaagtgcccggagccct 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 814 ttgtgtccacgttccccttcagcaaggtctgctcccgcaatcccaagtgcccggagccct 873 Query: 301 gctgcggtccttgtggcccctgtggtccctgcggcccctgcccaccacctcccagctgcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 874 gctgcggtccttgtggcccctgtggtccctgcggcccctgcccaccacctcccagctgcg 933 Query: 361 gctcgtgcccaccgcctcctagctgtggcccaccatgtcctccaccctgcgacccctgcg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 934 gctcgtgcccaccgcctcctagctgtggcccaccatgtcctccaccctgcgacccctgcg 993 Query: 421 atccgtgcgatccctgcagtccctgctgtggcggcggaactgccaccggcgggcccatgg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 994 atccgtgcgatccctgcagtccctgctgtggcggcggaactgccaccggcgggcccatgg 1053 Query: 481 at 482 || Sbjct: 1054 at 1055 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,344 Number of Sequences: 18737 Number of extensions: 14344 Number of successful extensions: 371 Number of sequences better than 1.0e-100: 4 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 367 Number of HSP's gapped (non-prelim): 4 length of query: 482 length of database: 41,270,998 effective HSP length: 17 effective length of query: 465 effective length of database: 40,952,469 effective search space: 19042898085 effective search space used: 19042898085 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI401911|AI401911 GH03396.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH03396 3prime, mRNA sequence. (505 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG1287-RA feature: mRNA loc=3R:complement(3326692..3328117);ID=F... 995 0.0 >CG1287-RA feature: mRNA loc=3R:complement(3326692..3328117);ID=FBan0001287;gene_i d=FBgn0037506;gene_sym=CG1287;sym=CG1287;scaffold=AE00367 1;len=1426 Length = 1426 Score = 995 bits (502), Expect = 0.0 Identities = 504/505 (99%) Strand = Plus / Minus Query: 1 agatttgtgctttagcttcgaacaatttcgaaaagatacatttcaaaatatgaaaatggg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1386 agatttgtgctttagcttcgaacaatttcgaaaagatacatttcaaaatatgaaaatggg 1327 Query: 61 taattctaactaaattatacaatttgtggtaaaaccccaggcggtttattttgtgtatct 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1326 taattctaactaaattatacaatttgtggtaaaaccccaggcggtttattttgtgtatct 1267 Query: 121 gaataaatttaggttttcctacaccttaaaccaactcagttcttcctcttttggtctcca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1266 gaataaatttaggttttcctacaccttaaaccaactcagttcttcctcttttggtctcca 1207 Query: 181 gccaatataattgcgatgcggataaagatgttgagcgcatccatgtaaatggccagggca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1206 gccaatataattgcgatgcggataaagatgttgagcgcatccatgtaaatggccagggca 1147 Query: 241 tgattaattggatcgtaagggaatttactgtactggggatacaactccgccgacttaacg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1146 tgattaattggatcgtaagggaatttactgtactggggatacaactccgccgacttaacg 1087 Query: 301 atcctttgggtatcgtacagaagaaatccgctgaacagaatcagtccgccgtacaacgac 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1086 atcctttgggtatcgtacagaagaaatccgctgaacagaatcagtccgccgtacaacgac 1027 Query: 361 atgctggccagtcccgcccccactgcagtagtgggcggcaaccacatggaggctancgag 420 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 1026 atgctggccagtcccgcccccactgcagtagtgggcggcaaccacatggaggctagcgag 967 Query: 421 gaggcgaagaccacgcccaatccaatggccagcggtccgcccatatgcaggaacttttcg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 966 gaggcgaagaccacgcccaatccaatggccagcggtccgcccatatgcaggaacttttcg 907 Query: 481 ctcggggcacaagcggccacggtgg 505 ||||||||||||||||||||||||| Sbjct: 906 ctcggggcacaagcggccacggtgg 882 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,860 Number of Sequences: 18737 Number of extensions: 11860 Number of successful extensions: 284 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 283 Number of HSP's gapped (non-prelim): 1 length of query: 505 length of database: 41,270,998 effective HSP length: 17 effective length of query: 488 effective length of database: 40,952,469 effective search space: 19984804872 effective search space used: 19984804872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI402104|AI402104 GH07823.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH07823 3prime, mRNA sequence. (523 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG8430-RB feature: mRNA loc=2R:join(11202077..11202163,11202492.... 1037 0.0 CG8430-RA feature: mRNA loc=2R:join(11202401..11202609,11204055.... 1037 0.0 >CG8430-RB feature: mRNA loc=2R:join(11202077..11202163,11202492..11202609, 11204055..11204162,11204225..11204298, 11204359..11205659);ID=FBan0008430;gene_id=FBgn0034079;ge ne_sym=CG8430;sym=CG8430;scaffold=AE003808;len=1688 Length = 1688 Score = 1037 bits (523), Expect = 0.0 Identities = 523/523 (100%) Strand = Plus / Minus Query: 1 aatgatattgtcgatttatttagttactacacacaggtcaataaacgttgtaagcttaaa 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1682 aatgatattgtcgatttatttagttactacacacaggtcaataaacgttgtaagcttaaa 1623 Query: 61 ttatttaaccaatcttcgacggctttcaatagtgcgtaatttttgtaaagtttttacttt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1622 ttatttaaccaatcttcgacggctttcaatagtgcgtaatttttgtaaagtttttacttt 1563 Query: 121 aatgtggaacattcgtttccggtgtataatatgtgtatatccatctaaaagccgcgtata 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1562 aatgtggaacattcgtttccggtgtataatatgtgtatatccatctaaaagccgcgtata 1503 Query: 181 aacgtttagtaattgcaattgttgttggtttgatttaaatgccaatggtgcagacatctg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1502 aacgtttagtaattgcaattgttgttggtttgatttaaatgccaatggtgcagacatctg 1443 Query: 241 tgatccagctttgggatttctaaatcgcatgcccaatatatgtacatagctagtcgttgt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1442 tgatccagctttgggatttctaaatcgcatgcccaatatatgtacatagctagtcgttgt 1383 Query: 301 acgtatctatccaatggtgcgatccaatggtacgattacaatttgttttcgcaaggacat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1382 acgtatctatccaatggtgcgatccaatggtacgattacaatttgttttcgcaaggacat 1323 Query: 361 gatgcactttctcctgatccggtgacagcggcatggatcgccttggccacatattcaacg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1322 gatgcactttctcctgatccggtgacagcggcatggatcgccttggccacatattcaacg 1263 Query: 421 ttgcccttattcaggccactcatgctgatgcgtcccgtcttcagcaggtaaatgtggtac 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1262 ttgcccttattcaggccactcatgctgatgcgtcccgtcttcagcaggtaaatgtggtac 1203 Query: 481 tggtcgatcagcacacgaacatggctctcgttcagaccggtgt 523 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1202 tggtcgatcagcacacgaacatggctctcgttcagaccggtgt 1160 >CG8430-RA feature: mRNA loc=2R:join(11202401..11202609,11204055..11204162, 11204225..11204298, 11204359..11205659);ID=FBan0008430;gene_id=FBgn0034079;ge ne_sym=CG8430;sym=CG8430;scaffold=AE003808;len=1692 Length = 1692 Score = 1037 bits (523), Expect = 0.0 Identities = 523/523 (100%) Strand = Plus / Minus Query: 1 aatgatattgtcgatttatttagttactacacacaggtcaataaacgttgtaagcttaaa 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1686 aatgatattgtcgatttatttagttactacacacaggtcaataaacgttgtaagcttaaa 1627 Query: 61 ttatttaaccaatcttcgacggctttcaatagtgcgtaatttttgtaaagtttttacttt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1626 ttatttaaccaatcttcgacggctttcaatagtgcgtaatttttgtaaagtttttacttt 1567 Query: 121 aatgtggaacattcgtttccggtgtataatatgtgtatatccatctaaaagccgcgtata 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1566 aatgtggaacattcgtttccggtgtataatatgtgtatatccatctaaaagccgcgtata 1507 Query: 181 aacgtttagtaattgcaattgttgttggtttgatttaaatgccaatggtgcagacatctg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1506 aacgtttagtaattgcaattgttgttggtttgatttaaatgccaatggtgcagacatctg 1447 Query: 241 tgatccagctttgggatttctaaatcgcatgcccaatatatgtacatagctagtcgttgt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1446 tgatccagctttgggatttctaaatcgcatgcccaatatatgtacatagctagtcgttgt 1387 Query: 301 acgtatctatccaatggtgcgatccaatggtacgattacaatttgttttcgcaaggacat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1386 acgtatctatccaatggtgcgatccaatggtacgattacaatttgttttcgcaaggacat 1327 Query: 361 gatgcactttctcctgatccggtgacagcggcatggatcgccttggccacatattcaacg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1326 gatgcactttctcctgatccggtgacagcggcatggatcgccttggccacatattcaacg 1267 Query: 421 ttgcccttattcaggccactcatgctgatgcgtcccgtcttcagcaggtaaatgtggtac 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1266 ttgcccttattcaggccactcatgctgatgcgtcccgtcttcagcaggtaaatgtggtac 1207 Query: 481 tggtcgatcagcacacgaacatggctctcgttcagaccggtgt 523 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1206 tggtcgatcagcacacgaacatggctctcgttcagaccggtgt 1164 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,866 Number of Sequences: 18737 Number of extensions: 12866 Number of successful extensions: 265 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 263 Number of HSP's gapped (non-prelim): 2 length of query: 523 length of database: 41,270,998 effective HSP length: 17 effective length of query: 506 effective length of database: 40,952,469 effective search space: 20721949314 effective search space used: 20721949314 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI402253|AI402253 GH11240.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH11240 3prime, mRNA sequence. (626 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG11089-RA feature: mRNA loc=3R:join(20693447..20693513,20695436... 1158 0.0 >CG11089-RA feature: mRNA loc=3R:join(20693447..20693513,20695436..20695498, 20695556..20696628,20696692..20697125,20697185..20697311, 20697373..20697857);ID=FBan0011089;gene_id=FBgn0039241;ge ne_sym=CG11089;sym=CG11089;scaffold=AE003749;len=2249 Length = 2249 Score = 1158 bits (584), Expect = 0.0 Identities = 615/626 (98%) Strand = Plus / Minus Query: 1 cgtttaactaactaaaggcaagtggttttattgagcttggaatggtcataaggcagtttg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2249 cgtttaactaactaaaggcaagtggttttattgagcttggaatggtcataaggcagtttg 2190 Query: 61 atggggtttgattaacagggtgtttctataaaaatacttaaaacgctacaaatgttatca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2189 atggggtttgattaacagggtgtttctataaaaatacttaaaacgctacaaatgttatca 2130 Query: 121 aaaatatttcaaatacaactacaattatttcaaatatgtaattttgctacatatttaaaa 180 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 2129 aaaatatttcaaatacaactacaattatttcagatatgtaattttgctacatatttaaaa 2070 Query: 181 atgcctttctacgtaggttataaatttcagtttaaaacgtaaatcaaattaactgaattg 240 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 2069 atgcctttctacgtaggttatagatttcagtttagaacgtaaatcaaattaactgaattg 2010 Query: 241 aaaattatttacaattctcttatgtattcgacttgaaaagttgggatttaaagttgaact 300 | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 2009 agaattatttacaattctcttatgtattcgacttgagaagttgggatttaaagttgaact 1950 Query: 301 ttatggaaatcaaagaaagagcttaaaaactgggaatgaatcgtatactcaagagtgtgt 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1949 ttatggaaatcaaagaaagagcttaaaaactgggaatgaatcgtatactcaagagtgtgt 1890 Query: 361 tgaacctaatggtggaacaatcgcagattggtatgggccatgatgataccgtgctcatcg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1889 tgaacctaatggtggaacaatcgcagattggtatgggccatgatgataccgtgctcatcg 1830 Query: 421 caggcggcaatgacaccagcatcattggtggatcctgcgggactggctatgtangagacg 480 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 1829 caggcggcaatgacaccagcatcattggtggatcctgcgggactggctatgtaggagacg 1770 Query: 481 ccgctcaggctatcgcgatcgatattatcacggaaggggaataaggcatcngatcccaag 540 |||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||| Sbjct: 1769 ccgctcaggctagcgcgatcgatattatcacggaaggggaagaaggcatcggatcccaag 1710 Query: 541 gccaccccactcagctgctttaaccattccactttttgctcactggtcagttgggctggt 600 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1709 gccacgccactcagctgctttaaccattccactttttgctcactggtcagttgggctggt 1650 Query: 601 gccttatcgaacattccctccaactg 626 |||||||||||||||||||| ||||| Sbjct: 1649 gccttatcgaacattccctcgaactg 1624 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,412 Number of Sequences: 18737 Number of extensions: 13412 Number of successful extensions: 314 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 313 Number of HSP's gapped (non-prelim): 1 length of query: 626 length of database: 41,270,998 effective HSP length: 17 effective length of query: 609 effective length of database: 40,952,469 effective search space: 24940053621 effective search space used: 24940053621 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944531|AI944531 bs03f01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs03f01 5', mRNA sequence. (357 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8533 Number of Sequences: 18737 Number of extensions: 8533 Number of successful extensions: 784 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 784 Number of HSP's gapped (non-prelim): 0 length of query: 357 length of database: 41,270,998 effective HSP length: 17 effective length of query: 340 effective length of database: 40,952,469 effective search space: 13923839460 effective search space used: 13923839460 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944569|AI944569 bs05a05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs05a05 5', mRNA sequence. (329 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32039-RA feature: mRNA loc=3L:join(9317733..9317897,9317956..9... 563 e-160 >CG32039-RA feature: mRNA loc=3L:join(9317733..9317897,9317956..9318126, 9318186..9318714);ID=FBan0032039;gene_id=FBgn0052039;gen e_sym=CG32039;sym=CG32039;scaffold=AE003552;len=865 Length = 865 Score = 563 bits (284), Expect = e-160 Identities = 293/296 (98%) Strand = Plus / Plus Query: 34 ctataaacaaacccatattatagcttattcaattcaatttaacaccatgggagcctgtct 93 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 57 ctataaacaaacccatattataacttattcaattcaatttaacaccatgggagcctgtct 116 Query: 94 gtcctgctgcggccaaagcgccgaggaaaccaacctgatgccatcgcctgaggagcgccg 153 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 117 gtcctgctgcggccaaagcgccgaggaaaccaacctgatgccatcgcctgaggagcgccg 176 Query: 154 ccagcagcagttggatgcggcggaaaagcgtcgccaggagaatgaacatcggggcattaa 213 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 177 ccagcagcagttggatgcggcggaaaagcgtcgccaggagaatgaacatcggggcattaa 236 Query: 214 gaatccggacagcgtacgccgacagcaacaaagagcggaggaaatgcaacgcagggagga 273 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 237 gaatccggacagcgtacgccgacagcaacaaagagcggaggaaatgcaacgcagggagga 296 Query: 274 ggaagccgaccgtcagggtcaaggacaatccaatcttaggtggcaaactagctaaa 329 ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 297 ggaggccgcccgtcagggtcaaggacaatccaatcttaggtggcaaactagctaaa 352 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9178 Number of Sequences: 18737 Number of extensions: 9178 Number of successful extensions: 822 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 820 Number of HSP's gapped (non-prelim): 2 length of query: 329 length of database: 41,270,998 effective HSP length: 16 effective length of query: 313 effective length of database: 40,971,206 effective search space: 12823987478 effective search space used: 12823987478 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944726|AI944726 bs04f10.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs04f10 5', mRNA sequence. (480 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG9485-RC feature: mRNA loc=2R:join(16357449..16357530,16357975.... 381 e-105 CG9485-RB feature: mRNA loc=2R:join(16356972..16357267,16357975.... 381 e-105 CG9485-RA feature: mRNA loc=2R:join(16356231..16356334,16357975.... 381 e-105 >CG9485-RC feature: mRNA loc=2R:join(16357449..16357530,16357975..16358315, 16358379..16358736,16358787..16360190,16360248..16361103, 16361160..16361337,16361398..16361567, 16361632..16363120);ID=FBan0009485;gene_id=FBgn0034618;ge ne_sym=CG9485;sym=CG9485;scaffold=AE003453;len=4878 Length = 4878 Score = 381 bits (192), Expect = e-105 Identities = 201/204 (98%) Strand = Plus / Minus Query: 7 gatgcagtacatccaccaccagatggcatcgcggcagttgaatctcggcttgctgccgct 66 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 3592 gatgcagtacatccaccaccagatagcatcgcggcagttgaatctcggcttgctgccgct 3533 Query: 67 gtccaaaagattcggaatgagtccgtgtcgaagggtctgaccaaatccaatgatgatgaa 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3532 gtccaaaagattcggaatgagtccgtgtcgaagggtctgaccaaatccaatgatgatgaa 3473 Query: 127 gcgagcttcgttgtaacggccggtgaggaacatggagccacgcagagcgatgaaggtatc 186 |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 3472 gcgagcctcgttgtaacggccagtgaggaacatggagccacgcagagcgatgaaggtatc 3413 Query: 187 acggccccagcaccgcatatagcc 210 |||||||||||||||||||||||| Sbjct: 3412 acggccccagcaccgcatatagcc 3389 >CG9485-RB feature: mRNA loc=2R:join(16356972..16357267,16357975..16358315, 16358379..16358736,16358787..16360190,16360248..16361103, 16361160..16361337,16361398..16361567, 16361632..16363120);ID=FBan0009485;gene_id=FBgn0034618;ge ne_sym=CG9485;sym=CG9485;scaffold=AE003453;len=5092 Length = 5092 Score = 381 bits (192), Expect = e-105 Identities = 201/204 (98%) Strand = Plus / Minus Query: 7 gatgcagtacatccaccaccagatggcatcgcggcagttgaatctcggcttgctgccgct 66 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 3806 gatgcagtacatccaccaccagatagcatcgcggcagttgaatctcggcttgctgccgct 3747 Query: 67 gtccaaaagattcggaatgagtccgtgtcgaagggtctgaccaaatccaatgatgatgaa 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3746 gtccaaaagattcggaatgagtccgtgtcgaagggtctgaccaaatccaatgatgatgaa 3687 Query: 127 gcgagcttcgttgtaacggccggtgaggaacatggagccacgcagagcgatgaaggtatc 186 |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 3686 gcgagcctcgttgtaacggccagtgaggaacatggagccacgcagagcgatgaaggtatc 3627 Query: 187 acggccccagcaccgcatatagcc 210 |||||||||||||||||||||||| Sbjct: 3626 acggccccagcaccgcatatagcc 3603 >CG9485-RA feature: mRNA loc=2R:join(16356231..16356334,16357975..16358315, 16358379..16358736,16358787..16360190,16360248..16361103, 16361160..16361337,16361398..16361567, 16361632..16363120);ID=FBan0009485;gene_id=FBgn0034618;ge ne_sym=CG9485;sym=CG9485;scaffold=AE003453;len=4900 Length = 4900 Score = 381 bits (192), Expect = e-105 Identities = 201/204 (98%) Strand = Plus / Minus Query: 7 gatgcagtacatccaccaccagatggcatcgcggcagttgaatctcggcttgctgccgct 66 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 3614 gatgcagtacatccaccaccagatagcatcgcggcagttgaatctcggcttgctgccgct 3555 Query: 67 gtccaaaagattcggaatgagtccgtgtcgaagggtctgaccaaatccaatgatgatgaa 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3554 gtccaaaagattcggaatgagtccgtgtcgaagggtctgaccaaatccaatgatgatgaa 3495 Query: 127 gcgagcttcgttgtaacggccggtgaggaacatggagccacgcagagcgatgaaggtatc 186 |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 3494 gcgagcctcgttgtaacggccagtgaggaacatggagccacgcagagcgatgaaggtatc 3435 Query: 187 acggccccagcaccgcatatagcc 210 |||||||||||||||||||||||| Sbjct: 3434 acggccccagcaccgcatatagcc 3411 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,022 Number of Sequences: 18737 Number of extensions: 12022 Number of successful extensions: 264 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 258 Number of HSP's gapped (non-prelim): 6 length of query: 480 length of database: 41,270,998 effective HSP length: 17 effective length of query: 463 effective length of database: 40,952,469 effective search space: 18960993147 effective search space used: 18960993147 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944894|AI944894 bs06f11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs06f11 5', mRNA sequence. (475 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value BEST:GH09435-RA feature: mRNA loc=2L:join(15982656..15983099,159... 811 0.0 >BEST:GH09435-RA feature: mRNA loc=2L:join(15982656..15983099, 15983172..15983551);ID=FBan0013245;gene_id=FBgn0045827;g ene_sym=BEST:GH09435;sym=CG13245;scaffold=AE003649;len=8 24 Length = 824 Score = 811 bits (409), Expect = 0.0 Identities = 409/409 (100%) Strand = Plus / Plus Query: 67 caatagtaaaaagagcacacgtttcggaaaacctaaaccaagtcaagatgtgtggtggct 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 76 caatagtaaaaagagcacacgtttcggaaaacctaaaccaagtcaagatgtgtggtggct 135 Query: 127 gggcctgtgcctcctacaatatcgcctgctgcaatccccgcctgtcgacactgcgattct 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 136 gggcctgtgcctcctacaatatcgcctgctgcaatccccgcctgtcgacactgcgattct 195 Query: 187 ctggccgctgtttcgcacccacgccctgcggtccatgtgatgactgttccatttacggcg 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 196 ctggccgctgtttcgcacccacgccctgcggtccatgtgatgactgttccatttacggcg 255 Query: 247 gttgctgcggtggctgctgcgggtgctaggtgatctctgacctggagtagccacagagtt 306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 256 gttgctgcggtggctgctgcgggtgctaggtgatctctgacctggagtagccacagagtt 315 Query: 307 gggtggagagtccggaattcaactatcttgaagtaggccttgggaactgttggctgtcag 366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 316 gggtggagagtccggaattcaactatcttgaagtaggccttgggaactgttggctgtcag 375 Query: 367 ccatgaaacaaatatcattcagtcccagtccagtccttgtcggaacaacaaccttaaacg 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 376 ccatgaaacaaatatcattcagtcccagtccagtccttgtcggaacaacaaccttaaacg 435 Query: 427 ttcaccgggttcccacatccgtttcctaaccatgtgtggtggctgggct 475 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 436 ttcaccgggttcccacatccgtttcctaaccatgtgtggtggctgggct 484 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,403 Number of Sequences: 18737 Number of extensions: 10403 Number of successful extensions: 292 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 287 Number of HSP's gapped (non-prelim): 4 length of query: 475 length of database: 41,270,998 effective HSP length: 17 effective length of query: 458 effective length of database: 40,952,469 effective search space: 18756230802 effective search space used: 18756230802 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI944898|AI944898 bs06g05.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs06g05 5', mRNA sequence. (499 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31003-RA feature: mRNA loc=3R:27187515..27189155;ID=FBan003100... 926 0.0 >CG31003-RA feature: mRNA loc=3R:27187515..27189155;ID=FBan0031003;gene_id=FBgn005 1003;gene_sym=CG31003;sym=CG31003;scaffold=AE003778;len= 1641 Length = 1641 Score = 926 bits (467), Expect = 0.0 Identities = 484/492 (98%) Strand = Plus / Plus Query: 8 ggcagttccacacgcatacgcacaannnnnnnaaattttgtttgatattttaaacacatg 67 ||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 11 ggcagttccacacgcatacgcacaatttttttaaattttgtttgatattttaaacacatg 70 Query: 68 aaatctcgtggataaccaaagtcatactcatactcataccgacatactcaggaatctcag 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 71 aaatctcgtggataaccaaagtcatactcatactcataccgacatactcaggaatctcag 130 Query: 128 atcagatggcttcccagagtaagaacagtgggttgaccaacaaggtgaccacggtggtgg 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 131 atcagatggcttcccagagtaagaacagtgggttgaccaacaaggtgaccacggtggtgg 190 Query: 188 ccaccaatgccttcggcgctgatgtgatgagcgagatcagctacacggacgcgaaagttg 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 191 ccaccaatgccttcggcgctgatgtgatgagcgagatcagctacacggacgcgaaagttg 250 Query: 248 tgggcaatggcagcttcggcgtggtcttccaggccaaaatggtgcccagcaacgaaatgg 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 251 tgggcaatggcagcttcggcgtggtcttccaggccaaaatggtgcccagcaacgaaatgg 310 Query: 308 tggccataaagaaggtcctgcaggatcggcgcttcaagaatcgggaactgcaaatcatgc 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 311 tggccataaagaaggtcctgcaggatcggcgcttcaagaatcgggaactgcaaatcatgc 370 Query: 368 gcaagctgcgccacgataacatcatcactctcaagtggttcttcttttcaagtggcgaga 427 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 371 gcaagctgcgccacgataacatcataactctcaagtggttcttcttttcaagtggcgaga 430 Query: 428 aaagggacgaggtctatctgaacctggtcatggagttcttgccggagacgctgtataaag 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 431 aaagggacgaggtctatctgaacctggtcatggagttcttgccggagacgctgtataaag 490 Query: 488 tggagcgacagt 499 |||||||||||| Sbjct: 491 tggagcgacagt 502 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,325 Number of Sequences: 18737 Number of extensions: 13325 Number of successful extensions: 353 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 351 Number of HSP's gapped (non-prelim): 1 length of query: 499 length of database: 41,270,998 effective HSP length: 17 effective length of query: 482 effective length of database: 40,952,469 effective search space: 19739090058 effective search space used: 19739090058 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945401|AI945401 bs12e02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs12e02 5', mRNA sequence. (554 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG18662-RA feature: mRNA loc=2L:join(8972911..8973014,8973086..8... 928 0.0 >CG18662-RA feature: mRNA loc=2L:join(8972911..8973014,8973086..8973250, 8973308..8973668);ID=FBan0018662;gene_id=FBgn0040963;gen e_sym=CG18662;sym=CG18662;scaffold=AE003623;len=630 Length = 630 Score = 928 bits (468), Expect = 0.0 Identities = 508/522 (97%) Strand = Plus / Minus Query: 33 acgtatagtcaaatttaattcaaatttacgtaagctatgcgcacacagtcgtaagaccga 92 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | Sbjct: 625 acgtatagtcaaatttaattcaaatttacgtaagcaatgcgcacacagtcgtaagaccaa 566 Query: 93 aatttgtaaaaaatatttcgagccaatagtgagtgtttcttaacncagaaatattggtca 152 |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| Sbjct: 565 aatttgtaaaaaatatgtcgagccaatagtgagtgtttcttaaaacagaaatattggtca 506 Query: 153 gtacacatccttctagggctccattccaccagattcagcatcgatcttgtgatcggtata 212 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 505 gtacacatccttctagggctccattccaccagattcggcatcgatcttgtgatcggtata 446 Query: 213 gatgggttgcaatatctcacgggcagcttcgtgatcagcttttcccagggcctgtgatct 272 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 445 gatgggttgcaatatctcacgggcagcttcgtgatcagcttttcccagggcctgtgatct 386 Query: 273 tccatacagcttgatgtacttcttttccttgtcgtgaaccaagtaaccacctccaagacc 332 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 385 tccatacagcttgatgtacttcttttccttgtcgtgaaccaagtaaccacctccaagacc 326 Query: 333 ctgggtgcacaagcccatcgactcagcttcctttnttaactcatcgtatacatcaagatg 392 ||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||| Sbjct: 325 ctgggtgcacaagcccatcgactcagcctcctttttcaactcatcgtatacatcaagatg 266 Query: 393 gtacttggccttggagaggctacgaatcacctgcttggcgctacccatttccccatggat 452 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 265 gtacttggccttggaaaggctacgaatcacctgcttggcgctacccatttccccatggat 206 Query: 453 gtaaacgtgggccatcatgtatttcgattttccactttccaccttggcaacaggaaaagc 512 |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct: 205 ataaacgtgggccatcatgtactttgattttccactttccaccttggcaacaggaaaagc 146 Query: 513 gactagacttcgcatcggcttctcacaataaagtcgagccgc 554 ||||||||||||||| |||||||||||||||||||||||||| Sbjct: 145 gactagacttcgcattggcttctcacaataaagtcgagccgc 104 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,657 Number of Sequences: 18737 Number of extensions: 10657 Number of successful extensions: 197 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 196 Number of HSP's gapped (non-prelim): 1 length of query: 554 length of database: 41,270,998 effective HSP length: 17 effective length of query: 537 effective length of database: 40,952,469 effective search space: 21991475853 effective search space used: 21991475853 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945496|AI945496 bs13e08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs13e08 5', mRNA sequence. (624 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31538-RA feature: mRNA loc=3R:complement(1101391..1103554);ID=... 1223 0.0 >CG31538-RA feature: mRNA loc=3R:complement(1101391..1103554);ID=FBan0031538;gene_ id=FBgn0051538;gene_sym=CG31538;sym=CG31538;scaffold=AE0 03603;len=2164 Length = 2164 Score = 1223 bits (617), Expect = 0.0 Identities = 617/617 (100%) Strand = Plus / Plus Query: 8 gtttcgtacagagctctccaaaatagaaaattcgaatttatttattcagtgttttgttgg 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 80 gtttcgtacagagctctccaaaatagaaaattcgaatttatttattcagtgttttgttgg 139 Query: 68 tcttacgagtccgtgaaatcgagttctttagtccgtgaagaaacgtgcttcgttttcgca 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 140 tcttacgagtccgtgaaatcgagttctttagtccgtgaagaaacgtgcttcgttttcgca 199 Query: 128 ggtttttgctaaattgttcgtgtatccattggttcacattatgagtactcatcagtatag 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 200 ggtttttgctaaattgttcgtgtatccattggttcacattatgagtactcatcagtatag 259 Query: 188 cctggggaggctggcccgccgaggcttcagcctgcggatgaatccgctggccggcacact 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 260 cctggggaggctggcccgccgaggcttcagcctgcggatgaatccgctggccggcacact 319 Query: 248 gcaaaggctttaccacacccgtagcaggccatgtgtggcccagagtgtgagccaggtggg 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 320 gcaaaggctttaccacacccgtagcaggccatgtgtggcccagagtgtgagccaggtggg 379 Query: 308 tgaacggtccaagccaacgttgcagccctacgacttcgaccgaagccgggtgcgtaaaat 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 380 tgaacggtccaagccaacgttgcagccctacgacttcgaccgaagccgggtgcgtaaaat 439 Query: 368 tgccggcgagaggaagacgctggtcgaccaggtgcggggcatgagcacaagcctgggaca 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 440 tgccggcgagaggaagacgctggtcgaccaggtgcggggcatgagcacaagcctgggaca 499 Query: 428 tgccaagttggtgccccaaaagatgtacggcaagacgaggctgttctcctccggaagcac 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 500 tgccaagttggtgccccaaaagatgtacggcaagacgaggctgttctcctccggaagcac 559 Query: 488 cctctacagtcgcttgcagcatctggaacagcagaacgaggaatattcgagtcgagagtc 547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 560 cctctacagtcgcttgcagcatctggaacagcagaacgaggaatattcgagtcgagagtc 619 Query: 548 ccagccgacgcacaccacagcctcattgtcggccacccagcagaggtacaatcaggcggc 607 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 620 ccagccgacgcacaccacagcctcattgtcggccacccagcagaggtacaatcaggcggc 679 Query: 608 aggattcggcaagggca 624 ||||||||||||||||| Sbjct: 680 aggattcggcaagggca 696 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,403 Number of Sequences: 18737 Number of extensions: 13403 Number of successful extensions: 221 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 220 Number of HSP's gapped (non-prelim): 1 length of query: 624 length of database: 41,270,998 effective HSP length: 17 effective length of query: 607 effective length of database: 40,952,469 effective search space: 24858148683 effective search space used: 24858148683 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945622|AI945622 bs14h06.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs14h06 5', mRNA sequence. (288 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3599 Number of Sequences: 18737 Number of extensions: 3599 Number of successful extensions: 226 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 226 Number of HSP's gapped (non-prelim): 0 length of query: 288 length of database: 41,270,998 effective HSP length: 16 effective length of query: 272 effective length of database: 40,971,206 effective search space: 11144168032 effective search space used: 11144168032 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945640|AI945640 bs15b02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs15b02 5', mRNA sequence. (479 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6541 Number of Sequences: 18737 Number of extensions: 6541 Number of successful extensions: 130 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 130 Number of HSP's gapped (non-prelim): 0 length of query: 479 length of database: 41,270,998 effective HSP length: 17 effective length of query: 462 effective length of database: 40,952,469 effective search space: 18920040678 effective search space used: 18920040678 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945784|AI945784 bs16g12.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs16g12 5', mRNA sequence. (305 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value R-RA feature: mRNA loc=3L:complement(1839743..1842305,1842690..1... 402 e-112 >R-RA feature: mRNA loc=3L:complement(1839743..1842305, 1842690..1842863);ID=FBan0001956;gene_id=FBgn0004636;gene _sym=R;sym=CG1956;scaffold=AE003473;len=2737 Length = 2737 Score = 402 bits (203), Expect = e-112 Identities = 219/227 (96%) Strand = Plus / Plus Query: 56 caaaagtataagcgtaaagtaaagaattttcaannnnnnnncgttctcgtttcgttttgg 115 ||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1265 caaaagtataagcgtaaagtaaagaattttcaaatttttttcgttctcgtttcgttttgg 1324 Query: 116 atccgatggcaattgtcgaattgaaataaccaatctactatatacaagcaaaacttaaac 175 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1325 atccgatggcaattgtcgaattgaaataaccaatctactatatacaagcaaaacttaaac 1384 Query: 176 tgacaaatgtttttaactgtttcaagtttttgtaattattaccatttactactattatga 235 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1385 tgacaaatgtttttaactgtttcaagtttttgtaattattaccatttactactattatga 1444 Query: 236 ttgtactatttttcgctgattaaccattaattcatatggggaattat 282 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1445 ttgtactatttttcgctgattaaccattaattcatatggggaattat 1491 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4962 Number of Sequences: 18737 Number of extensions: 4962 Number of successful extensions: 425 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 423 Number of HSP's gapped (non-prelim): 2 length of query: 305 length of database: 41,270,998 effective HSP length: 16 effective length of query: 289 effective length of database: 40,971,206 effective search space: 11840678534 effective search space used: 11840678534 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI945874|AI945874 bs17h01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs17h01 5', mRNA sequence. (398 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value BEST:GH09435-RA feature: mRNA loc=2L:join(15982656..15983099,159... 656 0.0 >BEST:GH09435-RA feature: mRNA loc=2L:join(15982656..15983099, 15983172..15983551);ID=FBan0013245;gene_id=FBgn0045827;g ene_sym=BEST:GH09435;sym=CG13245;scaffold=AE003649;len=8 24 Length = 824 Score = 656 bits (331), Expect = 0.0 Identities = 331/331 (100%) Strand = Plus / Plus Query: 68 caatagtaaaaagagcacacgtttcggaaaacctaaaccaagtcaagatgtgtggtggct 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 76 caatagtaaaaagagcacacgtttcggaaaacctaaaccaagtcaagatgtgtggtggct 135 Query: 128 gggcctgtgcctcctacaatatcgcctgctgcaatccccgcctgtcgacactgcgattct 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 136 gggcctgtgcctcctacaatatcgcctgctgcaatccccgcctgtcgacactgcgattct 195 Query: 188 ctggccgctgtttcgcacccacgccctgcggtccatgtgatgactgttccatttacggcg 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 196 ctggccgctgtttcgcacccacgccctgcggtccatgtgatgactgttccatttacggcg 255 Query: 248 gttgctgcggtggctgctgcgggtgctaggtgatctctgacctggagtagccacagagtt 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 256 gttgctgcggtggctgctgcgggtgctaggtgatctctgacctggagtagccacagagtt 315 Query: 308 gggtggagagtccggaattcaactatcttgaagtaggccttgggaactgttggctgtcag 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 316 gggtggagagtccggaattcaactatcttgaagtaggccttgggaactgttggctgtcag 375 Query: 368 ccatgaaacaaatatcattcagtcccagtcc 398 ||||||||||||||||||||||||||||||| Sbjct: 376 ccatgaaacaaatatcattcagtcccagtcc 406 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8605 Number of Sequences: 18737 Number of extensions: 8605 Number of successful extensions: 744 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 740 Number of HSP's gapped (non-prelim): 4 length of query: 398 length of database: 41,270,998 effective HSP length: 17 effective length of query: 381 effective length of database: 40,952,469 effective search space: 15602890689 effective search space used: 15602890689 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946003|AI946003 bs19d09.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs19d09 5', mRNA sequence. (194 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3373 Number of Sequences: 18737 Number of extensions: 3373 Number of successful extensions: 247 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 247 Number of HSP's gapped (non-prelim): 0 length of query: 194 length of database: 41,270,998 effective HSP length: 16 effective length of query: 178 effective length of database: 40,971,206 effective search space: 7292874668 effective search space used: 7292874668 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946215|AI946215 bs22c01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs22c01 5', mRNA sequence. (685 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,383 Number of Sequences: 18737 Number of extensions: 12383 Number of successful extensions: 300 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 300 Number of HSP's gapped (non-prelim): 0 length of query: 685 length of database: 41,270,998 effective HSP length: 17 effective length of query: 668 effective length of database: 40,952,469 effective search space: 27356249292 effective search space used: 27356249292 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946324|AI946324 bs23f03.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs23f03 5', mRNA sequence. (463 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG30156-RA feature: mRNA loc=2R:complement(2042348..2042587,2042... 872 0.0 >CG30156-RA feature: mRNA loc=2R:complement(2042348..2042587,2042645..2042811, 2042871..2043888);ID=FBan0030156;gene_id=FBgn0050156;gen e_sym=CG30156;sym=CG30156;scaffold=AE003790;len=1425 Length = 1425 Score = 872 bits (440), Expect = 0.0 Identities = 452/456 (99%) Strand = Plus / Plus Query: 8 ctatttcggttacctctaatatacatacaaaggcactttgttaaattcaccaactcggtg 67 ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 88 ctatttcggctacctctaatatacatacaaaagcactttgttaaattcaccaactcggtg 147 Query: 68 gattgtcccagaacaacaaaccaaaatttaaaatttgcaaacgaacagagaaaaacgaat 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 148 gattgtcccagaacaacaaaccaaaatttaaaatttgcaaacgaacagagaaaaacgaat 207 Query: 128 ccttttttgtcttctcacgctgctgggaaggagaagaaagtaaccaagaactggaggacg 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 208 ccttttttgtcttctcacgctgctgggaaggagaagaaagtaaccaagaactggaggacg 267 Query: 188 acgacttcacaatgggaatcctgcaggcgaggaggcatcactgcgtcgacaaagtggtga 247 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 268 acgacttcacaatgggaatcctgcaggcgaggaggcatcactgcgtcgacaaggtggtga 327 Query: 248 gtgacctgtgcttgggacactacgagcacgctctgaggcagatcaacgaggatctggaag 307 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 328 gtgacctgtgcctgggacactacgagcacgctctgaggcagatcaacgaggatctggaag 387 Query: 308 gcttacagaaccacgatgagatcatggcgctgctggagctaaagaatatcattttgagac 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 388 gcttacagaaccacgatgagatcatggcgctgctggagctaaagaatatcattttgagac 447 Query: 368 tgaggctgaagggcgaggcccagcggaccataggcccaactcgcaaatctgacgccctgc 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 448 tgaggctgaagggcgaggcccagcggaccataggcccaactcgcaaatctgacgccctgc 507 Query: 428 cccacaagttcacactcgagatgctggacgtggtgc 463 |||||||||||||||||||||||||||||||||||| Sbjct: 508 cccacaagttcacactcgagatgctggacgtggtgc 543 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,097 Number of Sequences: 18737 Number of extensions: 14097 Number of successful extensions: 343 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 342 Number of HSP's gapped (non-prelim): 1 length of query: 463 length of database: 41,270,998 effective HSP length: 17 effective length of query: 446 effective length of database: 40,952,469 effective search space: 18264801174 effective search space used: 18264801174 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946604|AI946604 bs28f01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs28f01 5', mRNA sequence. (414 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31538-RA feature: mRNA loc=3R:complement(1101391..1103554);ID=... 807 0.0 >CG31538-RA feature: mRNA loc=3R:complement(1101391..1103554);ID=FBan0031538;gene_ id=FBgn0051538;gene_sym=CG31538;sym=CG31538;scaffold=AE0 03603;len=2164 Length = 2164 Score = 807 bits (407), Expect = 0.0 Identities = 407/407 (100%) Strand = Plus / Plus Query: 8 gcttcagcctgcggatgaatccgctggccggcacactgcaaaggctttaccacacccgta 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 283 gcttcagcctgcggatgaatccgctggccggcacactgcaaaggctttaccacacccgta 342 Query: 68 gcaggccatgtgtggcccagagtgtgagccaggtgggtgaacggtccaagccaacgttgc 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 343 gcaggccatgtgtggcccagagtgtgagccaggtgggtgaacggtccaagccaacgttgc 402 Query: 128 agccctacgacttcgaccgaagccgggtgcgtaaaattgccggcgagaggaagacgctgg 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 403 agccctacgacttcgaccgaagccgggtgcgtaaaattgccggcgagaggaagacgctgg 462 Query: 188 tcgaccaggtgcggggcatgagcacaagcctgggacatgccaagttggtgccccaaaaga 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 463 tcgaccaggtgcggggcatgagcacaagcctgggacatgccaagttggtgccccaaaaga 522 Query: 248 tgtacggcaagacgaggctgttctcctccggaagcaccctctacagtcgcttgcagcatc 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 523 tgtacggcaagacgaggctgttctcctccggaagcaccctctacagtcgcttgcagcatc 582 Query: 308 tggaacagcagaacgaggaatattcgagtcgagagtcccagccgacgcacaccacagcct 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 583 tggaacagcagaacgaggaatattcgagtcgagagtcccagccgacgcacaccacagcct 642 Query: 368 cattgtcggccacccagcagaggtacaatcaggcggcaggattcggc 414 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 643 cattgtcggccacccagcagaggtacaatcaggcggcaggattcggc 689 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8706 Number of Sequences: 18737 Number of extensions: 8706 Number of successful extensions: 563 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 562 Number of HSP's gapped (non-prelim): 1 length of query: 414 length of database: 41,270,998 effective HSP length: 17 effective length of query: 397 effective length of database: 40,952,469 effective search space: 16258130193 effective search space used: 16258130193 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI946960|AI946960 bs33e02.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs33e02 5', mRNA sequence. (685 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG30487-RA feature: mRNA loc=2R:complement(8002380..8003057);ID=... 1336 0.0 >CG30487-RA feature: mRNA loc=2R:complement(8002380..8003057);ID=FBan0030487;gene_ id=FBgn0050487;gene_sym=CG30487;sym=CG30487;scaffold=AE0 03820;len=678 Length = 678 Score = 1336 bits (674), Expect = 0.0 Identities = 677/678 (99%) Strand = Plus / Plus Query: 8 ccatcacacatctcaagattctcaaaattaggtcacacacataagcgccaacaattcttt 67 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ccatcacacatctcaagattctcaaaattaggtcacacacataagcgccaacaattcttt 60 Query: 68 acaattaaaaagcatgtctatagaaaaaatctcctccgagctgcgtaagatgataatatc 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 acaattaaaaagcatgtctatagaaaaaatctcctccgagctgcgtaagatgataatatc 120 Query: 128 tgacaatccaatcgaagcaacaactttcgataaatctgcaatagaggcaactttggattc 187 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tgacaatccaatcgaagcaacaactttcgataaatctgcaatagaggcaactttggattc 180 Query: 188 caacaaattcgaagatctacgaattccgaagcatacactgaagcaaaagtttcttcttcg 247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 caacaaattcgaagatctacgaattccgaagcatacactgaagcaaaagtttcttcttcg 240 Query: 248 aaagtcaataattgaacatccctttaaaagaattcgtgccgaaggagtggattgggctca 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 aaagtcaataattgaacatccctttaaaagaattcgtgccgaaggagtggattgggctca 300 Query: 308 caaaattcgagacaccgacgaagagaaggaatctaattgggcaaagattgcgactggaaa 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 caaaattcgagacaccgacgaagagaaggaatctaattgggcaaagattgcgactggaaa 360 Query: 368 ggttactggcaatgcctacgatcttaaaaccatgatgagcgagtgtgaaaatatttgtgg 427 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 ggtttctggcaatgcctacgatcttaaaaccatgatgagcgagtgtgaaaatatttgtgg 420 Query: 428 ttacggaaacgccataaacttgacggtcccaagggtggacaaactacaggatctggctaa 487 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 ttacggaaacgccataaacttgacggtcccaagggtggacaaactacaggatctggctaa 480 Query: 488 atcgatcccaacggatcccgatacagtctacctgacctgtcaatgtgatgatattttctc 547 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 atcgatcccaacggatcccgatacagtctacctgacctgtcaatgtgatgatattttctc 540 Query: 548 taatggaggcacagaagctccgactcaaagccccgacgaagttaatttcgaagagctgtc 607 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 taatggaggcacagaagctccgactcaaagccccgacgaagttaatttcgaagagctgtc 600 Query: 608 cagctacttcgaaaatatgctcaacatacccaagaatcttccgctcagcgctgaaataat 667 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 601 cagctacttcgaaaatatgctcaacatacccaagaatcttccgctcagcgctgaaataat 660 Query: 668 gtatacttaatgattgga 685 |||||||||||||||||| Sbjct: 661 gtatacttaatgattgga 678 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,263 Number of Sequences: 18737 Number of extensions: 13263 Number of successful extensions: 223 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 222 Number of HSP's gapped (non-prelim): 1 length of query: 685 length of database: 41,270,998 effective HSP length: 17 effective length of query: 668 effective length of database: 40,952,469 effective search space: 27356249292 effective search space used: 27356249292 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI947185|AI947185 bs36a11.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs36a11 5', mRNA sequence. (593 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,207 Number of Sequences: 18737 Number of extensions: 15207 Number of successful extensions: 522 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 522 Number of HSP's gapped (non-prelim): 0 length of query: 593 length of database: 41,270,998 effective HSP length: 17 effective length of query: 576 effective length of database: 40,952,469 effective search space: 23588622144 effective search space used: 23588622144 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662047|BE662047 bs16e04.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs16e04 5', mRNA sequence. (291 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG30156-RA feature: mRNA loc=2R:complement(2042348..2042587,2042... 446 e-125 >CG30156-RA feature: mRNA loc=2R:complement(2042348..2042587,2042645..2042811, 2042871..2043888);ID=FBan0030156;gene_id=FBgn0050156;gen e_sym=CG30156;sym=CG30156;scaffold=AE003790;len=1425 Length = 1425 Score = 446 bits (225), Expect = e-125 Identities = 267/281 (95%) Strand = Plus / Plus Query: 11 cagtcaacttaagtcgaaactatttcggcttcctttaatatacatacaaaggcgctgtgt 70 ||||||||||| ||||||||||||||||| ||| ||||||||||||||| || || ||| Sbjct: 69 cagtcaacttagttcgaaactatttcggctacctctaatatacatacaaaagcactttgt 128 Query: 71 taaattcaccaactcggtggattgtcccagaacaacaaaccactatttgggatttgcaaa 130 |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| Sbjct: 129 taaattcaccaactcggtggattgtcccagaacaacaaaccaaaatttaaaatttgcaaa 188 Query: 131 cgaacagagaaaaacgaatccttttttgtcttctcacgctgctgggaaggagaagaaagt 190 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 189 cgaacagagaaaaacgaatccttttttgtcttctcacgctgctgggaaggagaagaaagt 248 Query: 191 aaccaagaactggaggacgacgacttcacaatgggaatcctgcaggcgaggaggcatcac 250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 249 aaccaagaactggaggacgacgacttcacaatgggaatcctgcaggcgaggaggcatcac 308 Query: 251 tgcgtcgacaaagtggtgagtgacctgtgcttgggacacta 291 ||||||||||| |||||||||||||||||| |||||||||| Sbjct: 309 tgcgtcgacaaggtggtgagtgacctgtgcctgggacacta 349 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8254 Number of Sequences: 18737 Number of extensions: 8254 Number of successful extensions: 695 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 694 Number of HSP's gapped (non-prelim): 1 length of query: 291 length of database: 41,270,998 effective HSP length: 16 effective length of query: 275 effective length of database: 40,971,206 effective search space: 11267081650 effective search space used: 11267081650 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662160|BE662160 bs25d01.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs25d01 5', mRNA sequence. (270 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG18662-RA feature: mRNA loc=2L:join(8972911..8973014,8973086..8... 391 e-108 >CG18662-RA feature: mRNA loc=2L:join(8972911..8973014,8973086..8973250, 8973308..8973668);ID=FBan0018662;gene_id=FBgn0040963;gen e_sym=CG18662;sym=CG18662;scaffold=AE003623;len=630 Length = 630 Score = 391 bits (197), Expect = e-108 Identities = 227/237 (95%) Strand = Plus / Minus Query: 34 acgtatagtcaaatttaattcaaatttacgtaagctatgcgcacacagttgtaagaccaa 93 ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| Sbjct: 625 acgtatagtcaaatttaattcaaatttacgtaagcaatgcgcacacagtcgtaagaccaa 566 Query: 94 aatttgtaaaaaatatttcgagccaatagtgagtgtttcttaaaacagaaatattggtta 153 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct: 565 aatttgtaaaaaatatgtcgagccaatagtgagtgtttcttaaaacagaaatattggtca 506 Query: 154 gtacacattcttctagggctccattccaccagattcagcatcgatcttgtgatcggtata 213 |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 505 gtacacatccttctagggctccattccaccagattcggcatcgatcttgtgatcggtata 446 Query: 214 gatgggttggaatatttcacgggcagctttgtgatcagctttttccagggcctgtga 270 ||||||||| ||||| ||||||||||||| ||||||||||||| ||||||||||||| Sbjct: 445 gatgggttgcaatatctcacgggcagcttcgtgatcagcttttcccagggcctgtga 389 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4967 Number of Sequences: 18737 Number of extensions: 4967 Number of successful extensions: 365 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 364 Number of HSP's gapped (non-prelim): 1 length of query: 270 length of database: 41,270,998 effective HSP length: 16 effective length of query: 254 effective length of database: 40,971,206 effective search space: 10406686324 effective search space used: 10406686324 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BE662181|BE662181 bs28b08.y1 Drosophila melanogaster adult testis library Drosophila melanogaster cDNA clone bs28b08 5', mRNA sequence. (444 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value His-Psi:CR31616-RA feature: pseudogene loc=2L:21373859..21374323... 827 0.0 His-PsiCR31615-RA feature: pseudogene loc=2L:21374707..21375105;... 716 0.0 His2A:CG31618-RA feature: mRNA loc=2L:21389579..21390160;ID=FBan... 589 e-168 >His-Psi:CR31616-RA feature: pseudogene loc=2L:21373859..21374323;ID=FBan0031616;gene_id=FBgn005 1616;gene_sym=His- Psi:CR31616;sym=CR31616;type=pseudogene;scaffold=AE00367 0;len=465 Length = 465 Score = 827 bits (417), Expect = 0.0 Identities = 428/432 (99%) Strand = Plus / Plus Query: 8 ggttcgactagcattcgtgttccatgtgtaaagtgaatttattaaaataaatgaaacaaa 67 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7 ggttccactagcattcgtgttccatgtgtaaagtgaatttattaaaataaatgaaacaaa 66 Query: 68 atgtctggacgtggaaaaggtggcaaagtgaagggaaaggcaaagtcccgctcaaaccgt 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 67 atgtctggacgtggaaaaggtggcaaagtgaagggaaaggcaaagtcccgctcaaaccgt 126 Query: 128 gccggtcttcaattccctgtgggccgtattcaccgttngttccggaagggcaactacgca 187 ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct: 127 gccggtcttcaattccctgtgggccgtattcaccgtttgctccggaagggcaactacgca 186 Query: 188 gagcgtgttggtgcaggcgctccagtttacctagctgccgtaatggaatatctggccgct 247 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 187 gagcgtgttggtgcaggcgctccagtttacctagctgccgtaatggaatatctagccgct 246 Query: 248 gaggttctcaagttggctggcaatgctgctcgtgagaacaagaagacgagaattattccg 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 247 gaggttctcaagttggctggcaatgctgctcgtgagaacaagaagacgagaattattccg 306 Query: 308 cgtcatctgcaactggccatccggaacgacgaggagttaaacaagctgctctccggcgtc 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 307 cgtcatctgcaactggccatccggaacgacgaggagttaaacaagctgctctccggcgtc 366 Query: 368 acaattgcacaaggtcgtcaatcaaaccgtccttttcaggacgaccaaattattagcaaa 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 367 acaattgcacaaggtcgtcaatcaaaccgtccttttcaggacgaccaaattattagcaaa 426 Query: 428 gaattgaaaaaa 439 |||||||||||| Sbjct: 427 gaattgaaaaaa 438 >His-PsiCR31615-RA feature: pseudogene loc=2L:21374707..21375105;ID=FBan0031615;gene_id=FBgn005 1615;gene_sym=His- PsiCR31615;sym=CR31615;type=pseudogene;scaffold=AE003670 ;len=399 Length = 399 Score = 716 bits (361), Expect = 0.0 Identities = 369/372 (99%) Strand = Plus / Plus Query: 68 atgtctggacgtggaaaaggtggcaaagtgaagggaaaggcaaagtcccgctcaaaccgt 127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atgtctggacgtggaaaaggtggcaaagtgaagggaaaggcaaagtcccgctcaaaccgt 60 Query: 128 gccggtcttcaattccctgtgggccgtattcaccgttngttccggaagggcaactacgca 187 ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct: 61 gccggtcttcaattccctgtgggccgtattcaccgtttgctccggaagggcaactacgca 120 Query: 188 gagcgtgttggtgcaggcgctccagtttacctagctgccgtaatggaatatctggccgct 247 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 121 gagcgtgttggtgcaggcgctccagtttacctagctgccgtaatggaatatctagccgct 180 Query: 248 gaggttctcaagttggctggcaatgctgctcgtgagaacaagaagacgagaattattccg 307 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 gaggttctcaagttggctggcaatgctgctcgtgagaacaagaagacgagaattattccg 240 Query: 308 cgtcatctgcaactggccatccggaacgacgaggagttaaacaagctgctctccggcgtc 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 cgtcatctgcaactggccatccggaacgacgaggagttaaacaagctgctctccggcgtc 300 Query: 368 acaattgcacaaggtcgtcaatcaaaccgtccttttcaggacgaccaaattattagcaaa 427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 acaattgcacaaggtcgtcaatcaaaccgtccttttcaggacgaccaaattattagcaaa 360 Query: 428 gaattgaaaaaa 439 |||||||||||| Sbjct: 361 gaattgaaaaaa 372 >His2A:CG31618-RA feature: mRNA loc=2L:21389579..21390160;ID=FBan0031618;gene_id=FBgn005 1618;gene_sym=His2A:CG31618;sym=CG31618;scaffold=AE00367 0;len=582 Length = 582 Score = 589 bits (297), Expect = e-168 Identities = 350/367 (95%), Gaps = 2/367 (0%) Strand = Plus / Plus Query: 18 gcattcgtgttccatgtgtaaagtgaatttattaaaataaatgaaa--caaaatgtctgg 75 ||||||||||||| || |||||||||| | | | ||||||| | || |||||||||||| Sbjct: 1 gcattcgtgttccgtgcgtaaagtgaactaagtgaaataaacgcaaagcaaaatgtctgg 60 Query: 76 acgtggaaaaggtggcaaagtgaagggaaaggcaaagtcccgctcaaaccgtgccggtct 135 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 acgtggaaaaggtggcaaagtgaagggaaaggcaaagtcccgctcaaaccgtgccggtct 120 Query: 136 tcaattccctgtgggccgtattcaccgttngttccggaagggcaactacgcagagcgtgt 195 ||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||| Sbjct: 121 tcaattccctgtgggccgtattcaccgtttgctccggaagggaaactacgcagagcgtgt 180 Query: 196 tggtgcaggcgctccagtttacctagctgccgtaatggaatatctggccgctgaggttct 255 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 tggtgcaggcgctccagtttacctagctgccgtaatggaatatctggccgctgaggttct 240 Query: 256 caagttggctggcaatgctgctcgtgagaacaagaagacgagaattattccgcgtcatct 315 | ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct: 241 cgagttggctggcaatgctgctcgtgacaacaagaagactagaattattccgcgtcatct 300 Query: 316 gcaactggccatccggaacgacgaggagttaaacaagctgctctccggcgtcacaattgc 375 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 gcaactggccatccgcaacgacgaggagttaaacaagctgctctccggcgtcacaattgc 360 Query: 376 acaaggt 382 ||||||| Sbjct: 361 acaaggt 367 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,420 Number of Sequences: 18737 Number of extensions: 10420 Number of successful extensions: 841 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 836 Number of HSP's gapped (non-prelim): 4 length of query: 444 length of database: 41,270,998 effective HSP length: 17 effective length of query: 427 effective length of database: 40,952,469 effective search space: 17486704263 effective search space used: 17486704263 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BF485996|BF485996 AT20116.5prime AT Drosophila melanogaster adult testes pOTB7 Drosophila melanogaster cDNA clone AT20116 5, mRNA sequence. (704 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,314 Number of Sequences: 18737 Number of extensions: 14314 Number of successful extensions: 336 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 336 Number of HSP's gapped (non-prelim): 0 length of query: 704 length of database: 41,270,998 effective HSP length: 17 effective length of query: 687 effective length of database: 40,952,469 effective search space: 28134346203 effective search space used: 28134346203 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG632137|BG632137 GH03983.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH03983 3, mRNA sequence. (554 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,426 Number of Sequences: 18737 Number of extensions: 10426 Number of successful extensions: 189 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 189 Number of HSP's gapped (non-prelim): 0 length of query: 554 length of database: 41,270,998 effective HSP length: 17 effective length of query: 537 effective length of database: 40,952,469 effective search space: 21991475853 effective search space used: 21991475853 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG632206|BG632206 GH05015.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH05015 3 similar to CG17646: FBan0017646 'transporter' located on: 2L 22B2-22B2;: 04/10/2001, mRNA sequence. (784 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG17646-RB feature: mRNA loc=2L:join(1734191..1734319,1743325..1... 1548 0.0 CG17646-RA feature: mRNA loc=2L:join(1739134..1739684,1743325..1... 1548 0.0 >CG17646-RB feature: mRNA loc=2L:join(1734191..1734319,1743325..1743741, 1743808..1743925,1745010..1745205,1745299..1745444, 1746588..1746826,1746886..1747026,1747384..1747694, 1749357..1749525,1750439..1750539,1751183..1751341, 1751407..1752278);ID=FBan0017646;gene_id=FBgn0031362;gene _sym=CG17646;sym=CG17646;scaffold=AE003585;len=2998 Length = 2998 Score = 1548 bits (781), Expect = 0.0 Identities = 783/784 (99%) Strand = Plus / Minus Query: 1 atatgtcatatacaagtaattcgaacttagggctaaaactaaagctaatcactaaagaga 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2941 atatgtcatatacaagtaattcgaacttagggctaaaactaaagctaatcactaaagaga 2882 Query: 61 cgaaacaaattattgatcacaaaagtatctttgtagcggaccttatagaagtagatgaat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2881 cgaaacaaattattgatcacaaaagtatctttgtagcggaccttatagaagtagatgaat 2822 Query: 121 attcaagacttggcatagctggagtcttcgcggagatccagctcagtggatgaagtattg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2821 attcaagacttggcatagctggagtcttcgcggagatccagctcagtggatgaagtattg 2762 Query: 181 tgtttacagggcaagatggaaacggggttatagagattgtgttgcagttgatcttccttt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2761 tgtttacagggcaagatggaaacggggttatagagattgtgttgcagttgatcttccttt 2702 Query: 241 ttggtatatcagcacttaaactggatttaagctaccctaaagccttcttgcgtacaatat 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2701 ttggtatatcagcacttaaactggatttaagctaccctaaagccttcttgcgtacaatat 2642 Query: 301 ttcagagaatatttaaataaatacctaagctaacatcgaatcggtcgatcaattgtaaaa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2641 ttcagagaatatttaaataaatacctaagctaacatcgaatcggtcgatcaattgtaaaa 2582 Query: 361 acacaaaaagggtagtttcgaatttggaacttaaaacgaggagagatggaaagacacccg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2581 acacaaaaagggtagtttcgaatttggaacttaaaacgaggagagatggaaagacacccg 2522 Query: 421 actatgtacaaaaggattgcagccatggaccaaacattggccatggtatcttatcgcttg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2521 actatgtacaaaaggattgcagccatggaccaaacattggccatggtatcttatcgcttg 2462 Query: 481 ttgagcttgtgccacagcgtgatgagggtcagcacatgcatgactccaatcacgatgccc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2461 ttgagcttgtgccacagcgtgatgagggtcagcacatgcatgactccaatcacgatgccc 2402 Query: 541 atgaggatcaggcagtcggacatgtgcacatccgatatcatcatgtacttgagaaagacc 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2401 atgaggatcaggcagtcggacatgtgcacatccgatatcatcatgtacttgagaaagacc 2342 Query: 601 ttcgggctgcggaagtggcaatacatcgcagtctcggggcactccagaaagggtcgatcc 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2341 ttcgggctgcggaagtggcaatacatcgcagtctcggggcactccagaaagggtcgatcc 2282 Query: 661 atgccgtaaatggcgttcaacgccccgtggaatccggnccggaagtaactcaggtgccac 720 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 2281 atgccgtaaatggcgttcaacgccccgtggaatccggcccggaagtaactcaggtgccac 2222 Query: 721 atccatcggaagaggggcgtgatgtcgatgtagcgcgtgcagaatccaaaaacggagaac 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2221 atccatcggaagaggggcgtgatgtcgatgtagcgcgtgcagaatccaaaaacggagaac 2162 Query: 781 atca 784 |||| Sbjct: 2161 atca 2158 >CG17646-RA feature: mRNA loc=2L:join(1739134..1739684,1743325..1743741, 1743808..1743925,1745010..1745205,1745299..1745444, 1746588..1746826,1746886..1747026,1747384..1747694, 1749357..1749525,1750439..1750539,1751183..1751341, 1751407..1752278);ID=FBan0017646;gene_id=FBgn0031362;gene _sym=CG17646;sym=CG17646;scaffold=AE003585;len=3420 Length = 3420 Score = 1548 bits (781), Expect = 0.0 Identities = 783/784 (99%) Strand = Plus / Minus Query: 1 atatgtcatatacaagtaattcgaacttagggctaaaactaaagctaatcactaaagaga 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3363 atatgtcatatacaagtaattcgaacttagggctaaaactaaagctaatcactaaagaga 3304 Query: 61 cgaaacaaattattgatcacaaaagtatctttgtagcggaccttatagaagtagatgaat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3303 cgaaacaaattattgatcacaaaagtatctttgtagcggaccttatagaagtagatgaat 3244 Query: 121 attcaagacttggcatagctggagtcttcgcggagatccagctcagtggatgaagtattg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3243 attcaagacttggcatagctggagtcttcgcggagatccagctcagtggatgaagtattg 3184 Query: 181 tgtttacagggcaagatggaaacggggttatagagattgtgttgcagttgatcttccttt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3183 tgtttacagggcaagatggaaacggggttatagagattgtgttgcagttgatcttccttt 3124 Query: 241 ttggtatatcagcacttaaactggatttaagctaccctaaagccttcttgcgtacaatat 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3123 ttggtatatcagcacttaaactggatttaagctaccctaaagccttcttgcgtacaatat 3064 Query: 301 ttcagagaatatttaaataaatacctaagctaacatcgaatcggtcgatcaattgtaaaa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3063 ttcagagaatatttaaataaatacctaagctaacatcgaatcggtcgatcaattgtaaaa 3004 Query: 361 acacaaaaagggtagtttcgaatttggaacttaaaacgaggagagatggaaagacacccg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3003 acacaaaaagggtagtttcgaatttggaacttaaaacgaggagagatggaaagacacccg 2944 Query: 421 actatgtacaaaaggattgcagccatggaccaaacattggccatggtatcttatcgcttg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2943 actatgtacaaaaggattgcagccatggaccaaacattggccatggtatcttatcgcttg 2884 Query: 481 ttgagcttgtgccacagcgtgatgagggtcagcacatgcatgactccaatcacgatgccc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2883 ttgagcttgtgccacagcgtgatgagggtcagcacatgcatgactccaatcacgatgccc 2824 Query: 541 atgaggatcaggcagtcggacatgtgcacatccgatatcatcatgtacttgagaaagacc 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2823 atgaggatcaggcagtcggacatgtgcacatccgatatcatcatgtacttgagaaagacc 2764 Query: 601 ttcgggctgcggaagtggcaatacatcgcagtctcggggcactccagaaagggtcgatcc 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2763 ttcgggctgcggaagtggcaatacatcgcagtctcggggcactccagaaagggtcgatcc 2704 Query: 661 atgccgtaaatggcgttcaacgccccgtggaatccggnccggaagtaactcaggtgccac 720 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 2703 atgccgtaaatggcgttcaacgccccgtggaatccggcccggaagtaactcaggtgccac 2644 Query: 721 atccatcggaagaggggcgtgatgtcgatgtagcgcgtgcagaatccaaaaacggagaac 780 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2643 atccatcggaagaggggcgtgatgtcgatgtagcgcgtgcagaatccaaaaacggagaac 2584 Query: 781 atca 784 |||| Sbjct: 2583 atca 2580 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,870 Number of Sequences: 18737 Number of extensions: 15870 Number of successful extensions: 345 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 343 Number of HSP's gapped (non-prelim): 2 length of query: 784 length of database: 41,270,998 effective HSP length: 17 effective length of query: 767 effective length of database: 40,952,469 effective search space: 31410543723 effective search space used: 31410543723 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG632209|BG632209 GH05123.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH05123 3 similar to T-cp1: FBan0005374 'chaperone' located on: 3R 94B4-94B4;: 04/10/2001, mRNA sequence. (478 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value T-cp1-RB feature: mRNA loc=3R:complement(18305463..18306236,1830... 940 0.0 T-cp1-RA feature: mRNA loc=3R:complement(18305463..18306236,1830... 940 0.0 >T-cp1-RB feature: mRNA loc=3R:complement(18305463..18306236,18306300..18307190, 18307246..18307399,18307637..18307729, 18307794..18307809);ID=FBan0005374;gene_id=FBgn0003676;ge ne_sym=T-cp1;sym=CG5374;scaffold=AE003739;len=1928 Length = 1928 Score = 940 bits (474), Expect = 0.0 Identities = 477/478 (99%) Strand = Plus / Minus Query: 1 attctgaagatcagtttattatacattgaagcatggatgagaaaggattgcggatgtgcg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1911 attctgaagatcagtttattatacattgaagcatggatgagaaaggattgcggatgtgcg 1852 Query: 61 gtgttaatacagatcgcgaagggcaacacaattaaattgttgttacaatcaatggggcga 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1851 gtgttaatacagatcgcgaagggcaacacaattaaattgttgttacaatcaatggggcga 1792 Query: 121 caattgaaagtgagtgatttgattaaaattaaatgcctaaacaagatagaagaaatgtgc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1791 caattgaaagtgagtgatttgattaaaattaaatgcctaaacaagatagaagaaatgtgc 1732 Query: 181 ttcgctcgcggtgaagaatgtctaaccgtccagctcgccggcagcgcatgcatcggcgta 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1731 ttcgctcgcggtgaagaatgtctaaccgtccagctcgccggcagcgcatgcatcggcgta 1672 Query: 241 actcttgccgctcttgtcctccggattcagcttgatcatgtcgtcaatacgcaaaatggt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1671 actcttgccgctcttgtcctccggattcagcttgatcatgtcgtcaatacgcaaaatggt 1612 Query: 301 aatggcggcctccgtggcgaacttgagcgacttgatcttggacatggcgggctccaaaac 360 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1611 aatggcggcctccgtggcgaacttcagcgacttgatcttggacatggcgggctccaaaac 1552 Query: 361 tccagccttcttgttgtcccttaccactccctcgatcagatccagaccggtccacttaag 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1551 tccagccttcttgttgtcccttaccactccctcgatcagatccagaccggtccacttaag 1492 Query: 421 atccgaacgctcgggcttcgtctggctggagttgtggtaggagcggagcttggccact 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1491 atccgaacgctcgggcttcgtctggctggagttgtggtaggagcggagcttggccact 1434 >T-cp1-RA feature: mRNA loc=3R:complement(18305463..18306236,18306300..18307190, 18307246..18307399, 18307637..18307809);ID=FBan0005374;gene_id=FBgn0003676;ge ne_sym=T-cp1;sym=CG5374;scaffold=AE003739;len=1992 Length = 1992 Score = 940 bits (474), Expect = 0.0 Identities = 477/478 (99%) Strand = Plus / Minus Query: 1 attctgaagatcagtttattatacattgaagcatggatgagaaaggattgcggatgtgcg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1975 attctgaagatcagtttattatacattgaagcatggatgagaaaggattgcggatgtgcg 1916 Query: 61 gtgttaatacagatcgcgaagggcaacacaattaaattgttgttacaatcaatggggcga 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1915 gtgttaatacagatcgcgaagggcaacacaattaaattgttgttacaatcaatggggcga 1856 Query: 121 caattgaaagtgagtgatttgattaaaattaaatgcctaaacaagatagaagaaatgtgc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1855 caattgaaagtgagtgatttgattaaaattaaatgcctaaacaagatagaagaaatgtgc 1796 Query: 181 ttcgctcgcggtgaagaatgtctaaccgtccagctcgccggcagcgcatgcatcggcgta 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1795 ttcgctcgcggtgaagaatgtctaaccgtccagctcgccggcagcgcatgcatcggcgta 1736 Query: 241 actcttgccgctcttgtcctccggattcagcttgatcatgtcgtcaatacgcaaaatggt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1735 actcttgccgctcttgtcctccggattcagcttgatcatgtcgtcaatacgcaaaatggt 1676 Query: 301 aatggcggcctccgtggcgaacttgagcgacttgatcttggacatggcgggctccaaaac 360 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 1675 aatggcggcctccgtggcgaacttcagcgacttgatcttggacatggcgggctccaaaac 1616 Query: 361 tccagccttcttgttgtcccttaccactccctcgatcagatccagaccggtccacttaag 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1615 tccagccttcttgttgtcccttaccactccctcgatcagatccagaccggtccacttaag 1556 Query: 421 atccgaacgctcgggcttcgtctggctggagttgtggtaggagcggagcttggccact 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1555 atccgaacgctcgggcttcgtctggctggagttgtggtaggagcggagcttggccact 1498 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,647 Number of Sequences: 18737 Number of extensions: 10647 Number of successful extensions: 253 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 251 Number of HSP's gapped (non-prelim): 2 length of query: 478 length of database: 41,270,998 effective HSP length: 17 effective length of query: 461 effective length of database: 40,952,469 effective search space: 18879088209 effective search space used: 18879088209 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG632280|BG632280 GH06087.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH06087 3, mRNA sequence. (569 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,384 Number of Sequences: 18737 Number of extensions: 16384 Number of successful extensions: 695 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 695 Number of HSP's gapped (non-prelim): 0 length of query: 569 length of database: 41,270,998 effective HSP length: 17 effective length of query: 552 effective length of database: 40,952,469 effective search space: 22605762888 effective search space used: 22605762888 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG632302|BG632302 GH06341.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH06341 3 similar to CG11711: FBan0011711 located on: 3L 68C5-68C7;: 04/10/2001, mRNA sequence. (462 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,458 Number of Sequences: 18737 Number of extensions: 11458 Number of successful extensions: 714 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 714 Number of HSP's gapped (non-prelim): 0 length of query: 462 length of database: 41,270,998 effective HSP length: 17 effective length of query: 445 effective length of database: 40,952,469 effective search space: 18223848705 effective search space used: 18223848705 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG632346|BG632346 GH06752.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH06752 3 similar to mfas: FBan0003359 'signal transduction' located on: 3R 87A8-87A9;: 04/10/2001, mRNA sequence. (735 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value mfas-RP feature: mRNA loc=3R:complement(7810602..7811227,7811289... 1449 0.0 mfas-RO feature: mRNA loc=3R:complement(7810602..7811227,7811289... 1449 0.0 mfas-RN feature: mRNA loc=3R:complement(7810602..7811227,7811289... 1449 0.0 mfas-RM feature: mRNA loc=3R:complement(7810602..7811227,7811289... 1449 0.0 mfas-RL feature: mRNA loc=3R:complement(7810602..7811227,7811289... 1449 0.0 mfas-RK feature: mRNA loc=3R:complement(7810602..7811227,7811289... 1449 0.0 mfas-RJ feature: mRNA loc=3R:complement(7810602..7811227,7811289... 1449 0.0 mfas-RI feature: mRNA loc=3R:complement(7810602..7811227,7811289... 1449 0.0 mfas-RH feature: mRNA loc=3R:complement(7810602..7811227,7811289... 1449 0.0 mfas-RG feature: mRNA loc=3R:complement(7810602..7811227,7811289... 1449 0.0 mfas-RF feature: mRNA loc=3R:complement(7810602..7811227,7811289... 1449 0.0 mfas-RE feature: mRNA loc=3R:complement(7810602..7811227,7811289... 1449 0.0 mfas-RD feature: mRNA loc=3R:complement(7810602..7811227,7811289... 1449 0.0 mfas-RC feature: mRNA loc=3R:complement(7810602..7811227,7811289... 1449 0.0 mfas-RB feature: mRNA loc=3R:complement(7810602..7811227,7811289... 1449 0.0 >mfas-RP feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815068,7818482..7818614, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2717 Length = 2717 Score = 1449 bits (731), Expect = 0.0 Identities = 734/735 (99%) Strand = Plus / Minus Query: 1 gttttaatactatttattttatttatgagaggagattctgagctttttgcggcttccaat 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2717 gttttaatactatttattttatttatcagaggagattctgagctttttgcggcttccaat 2658 Query: 61 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2657 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 2598 Query: 121 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2597 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 2538 Query: 181 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2537 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 2478 Query: 241 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2477 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 2418 Query: 301 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2417 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 2358 Query: 361 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2357 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 2298 Query: 421 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2297 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 2238 Query: 481 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2237 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 2178 Query: 541 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2177 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 2118 Query: 601 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2117 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 2058 Query: 661 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2057 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 1998 Query: 721 gcccggttcatcacg 735 ||||||||||||||| Sbjct: 1997 gcccggttcatcacg 1983 >mfas-RO feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815065,7817812..7817883, 7818482..7818592, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2764 Length = 2764 Score = 1449 bits (731), Expect = 0.0 Identities = 734/735 (99%) Strand = Plus / Minus Query: 1 gttttaatactatttattttatttatgagaggagattctgagctttttgcggcttccaat 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2764 gttttaatactatttattttatttatcagaggagattctgagctttttgcggcttccaat 2705 Query: 61 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2704 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 2645 Query: 121 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2644 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 2585 Query: 181 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2584 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 2525 Query: 241 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2524 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 2465 Query: 301 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2464 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 2405 Query: 361 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2404 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 2345 Query: 421 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2344 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 2285 Query: 481 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2284 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 2225 Query: 541 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2224 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 2165 Query: 601 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2164 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 2105 Query: 661 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2104 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 2045 Query: 721 gcccggttcatcacg 735 ||||||||||||||| Sbjct: 2044 gcccggttcatcacg 2030 >mfas-RN feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815065,7818482..7818592, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2692 Length = 2692 Score = 1449 bits (731), Expect = 0.0 Identities = 734/735 (99%) Strand = Plus / Minus Query: 1 gttttaatactatttattttatttatgagaggagattctgagctttttgcggcttccaat 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2692 gttttaatactatttattttatttatcagaggagattctgagctttttgcggcttccaat 2633 Query: 61 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2632 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 2573 Query: 121 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2572 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 2513 Query: 181 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2512 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 2453 Query: 241 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2452 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 2393 Query: 301 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2392 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 2333 Query: 361 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2332 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 2273 Query: 421 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2272 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 2213 Query: 481 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2212 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 2153 Query: 541 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2152 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 2093 Query: 601 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2092 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 2033 Query: 661 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2032 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 1973 Query: 721 gcccggttcatcacg 735 ||||||||||||||| Sbjct: 1972 gcccggttcatcacg 1958 >mfas-RM feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815068,7817812..7817883, 7818482..7818614, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2789 Length = 2789 Score = 1449 bits (731), Expect = 0.0 Identities = 734/735 (99%) Strand = Plus / Minus Query: 1 gttttaatactatttattttatttatgagaggagattctgagctttttgcggcttccaat 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2789 gttttaatactatttattttatttatcagaggagattctgagctttttgcggcttccaat 2730 Query: 61 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2729 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 2670 Query: 121 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2669 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 2610 Query: 181 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2609 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 2550 Query: 241 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2549 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 2490 Query: 301 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2489 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 2430 Query: 361 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2429 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 2370 Query: 421 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2369 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 2310 Query: 481 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2309 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 2250 Query: 541 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2249 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 2190 Query: 601 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2189 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 2130 Query: 661 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2129 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 2070 Query: 721 gcccggttcatcacg 735 ||||||||||||||| Sbjct: 2069 gcccggttcatcacg 2055 >mfas-RL feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815068,7818482..7818592, 7818872..7819014);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2771 Length = 2771 Score = 1449 bits (731), Expect = 0.0 Identities = 734/735 (99%) Strand = Plus / Minus Query: 1 gttttaatactatttattttatttatgagaggagattctgagctttttgcggcttccaat 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2771 gttttaatactatttattttatttatcagaggagattctgagctttttgcggcttccaat 2712 Query: 61 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2711 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 2652 Query: 121 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2651 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 2592 Query: 181 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2591 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 2532 Query: 241 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2531 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 2472 Query: 301 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2471 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 2412 Query: 361 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2411 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 2352 Query: 421 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2351 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 2292 Query: 481 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2291 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 2232 Query: 541 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2231 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 2172 Query: 601 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2171 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 2112 Query: 661 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2111 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 2052 Query: 721 gcccggttcatcacg 735 ||||||||||||||| Sbjct: 2051 gcccggttcatcacg 2037 >mfas-RK feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815263,7818482..7818614, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2912 Length = 2912 Score = 1449 bits (731), Expect = 0.0 Identities = 734/735 (99%) Strand = Plus / Minus Query: 1 gttttaatactatttattttatttatgagaggagattctgagctttttgcggcttccaat 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2912 gttttaatactatttattttatttatcagaggagattctgagctttttgcggcttccaat 2853 Query: 61 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2852 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 2793 Query: 121 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2792 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 2733 Query: 181 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2732 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 2673 Query: 241 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2672 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 2613 Query: 301 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2612 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 2553 Query: 361 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2552 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 2493 Query: 421 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2492 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 2433 Query: 481 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2432 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 2373 Query: 541 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2372 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 2313 Query: 601 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2312 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 2253 Query: 661 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2252 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 2193 Query: 721 gcccggttcatcacg 735 ||||||||||||||| Sbjct: 2192 gcccggttcatcacg 2178 >mfas-RJ feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815263,7817812..7817883, 7818482..7818592, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2962 Length = 2962 Score = 1449 bits (731), Expect = 0.0 Identities = 734/735 (99%) Strand = Plus / Minus Query: 1 gttttaatactatttattttatttatgagaggagattctgagctttttgcggcttccaat 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2962 gttttaatactatttattttatttatcagaggagattctgagctttttgcggcttccaat 2903 Query: 61 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2902 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 2843 Query: 121 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2842 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 2783 Query: 181 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2782 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 2723 Query: 241 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2722 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 2663 Query: 301 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2662 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 2603 Query: 361 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2602 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 2543 Query: 421 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2542 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 2483 Query: 481 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2482 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 2423 Query: 541 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2422 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 2363 Query: 601 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2362 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 2303 Query: 661 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2302 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 2243 Query: 721 gcccggttcatcacg 735 ||||||||||||||| Sbjct: 2242 gcccggttcatcacg 2228 >mfas-RI feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815263,7818482..7818592, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2890 Length = 2890 Score = 1449 bits (731), Expect = 0.0 Identities = 734/735 (99%) Strand = Plus / Minus Query: 1 gttttaatactatttattttatttatgagaggagattctgagctttttgcggcttccaat 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2890 gttttaatactatttattttatttatcagaggagattctgagctttttgcggcttccaat 2831 Query: 61 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2830 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 2771 Query: 121 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2770 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 2711 Query: 181 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2710 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 2651 Query: 241 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2650 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 2591 Query: 301 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2590 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 2531 Query: 361 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2530 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 2471 Query: 421 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2470 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 2411 Query: 481 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2410 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 2351 Query: 541 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2350 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 2291 Query: 601 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2290 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 2231 Query: 661 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2230 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 2171 Query: 721 gcccggttcatcacg 735 ||||||||||||||| Sbjct: 2170 gcccggttcatcacg 2156 >mfas-RH feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815065,7818482..7818614, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2714 Length = 2714 Score = 1449 bits (731), Expect = 0.0 Identities = 734/735 (99%) Strand = Plus / Minus Query: 1 gttttaatactatttattttatttatgagaggagattctgagctttttgcggcttccaat 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2714 gttttaatactatttattttatttatcagaggagattctgagctttttgcggcttccaat 2655 Query: 61 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2654 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 2595 Query: 121 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2594 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 2535 Query: 181 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2534 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 2475 Query: 241 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2474 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 2415 Query: 301 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2414 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 2355 Query: 361 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2354 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 2295 Query: 421 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2294 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 2235 Query: 481 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2234 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 2175 Query: 541 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2174 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 2115 Query: 601 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2114 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 2055 Query: 661 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2054 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 1995 Query: 721 gcccggttcatcacg 735 ||||||||||||||| Sbjct: 1994 gcccggttcatcacg 1980 >mfas-RG feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815068,7817812..7817883, 7818482..7818592, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2767 Length = 2767 Score = 1449 bits (731), Expect = 0.0 Identities = 734/735 (99%) Strand = Plus / Minus Query: 1 gttttaatactatttattttatttatgagaggagattctgagctttttgcggcttccaat 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2767 gttttaatactatttattttatttatcagaggagattctgagctttttgcggcttccaat 2708 Query: 61 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2707 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 2648 Query: 121 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2647 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 2588 Query: 181 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2587 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 2528 Query: 241 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2527 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 2468 Query: 301 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2467 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 2408 Query: 361 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2407 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 2348 Query: 421 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2347 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 2288 Query: 481 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2287 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 2228 Query: 541 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2227 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 2168 Query: 601 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2167 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 2108 Query: 661 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2107 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 2048 Query: 721 gcccggttcatcacg 735 ||||||||||||||| Sbjct: 2047 gcccggttcatcacg 2033 >mfas-RF feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815068,7817812..7817883, 7818482..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=3163 Length = 3163 Score = 1449 bits (731), Expect = 0.0 Identities = 734/735 (99%) Strand = Plus / Minus Query: 1 gttttaatactatttattttatttatgagaggagattctgagctttttgcggcttccaat 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 3163 gttttaatactatttattttatttatcagaggagattctgagctttttgcggcttccaat 3104 Query: 61 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3103 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 3044 Query: 121 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3043 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 2984 Query: 181 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2983 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 2924 Query: 241 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2923 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 2864 Query: 301 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2863 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 2804 Query: 361 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2803 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 2744 Query: 421 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2743 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 2684 Query: 481 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2683 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 2624 Query: 541 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2623 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 2564 Query: 601 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2563 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 2504 Query: 661 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2503 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 2444 Query: 721 gcccggttcatcacg 735 ||||||||||||||| Sbjct: 2443 gcccggttcatcacg 2429 >mfas-RE feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815065,7817812..7817883, 7818482..7818614, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2786 Length = 2786 Score = 1449 bits (731), Expect = 0.0 Identities = 734/735 (99%) Strand = Plus / Minus Query: 1 gttttaatactatttattttatttatgagaggagattctgagctttttgcggcttccaat 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2786 gttttaatactatttattttatttatcagaggagattctgagctttttgcggcttccaat 2727 Query: 61 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2726 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 2667 Query: 121 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2666 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 2607 Query: 181 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2606 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 2547 Query: 241 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2546 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 2487 Query: 301 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2486 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 2427 Query: 361 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2426 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 2367 Query: 421 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2366 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 2307 Query: 481 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2306 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 2247 Query: 541 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2246 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 2187 Query: 601 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2186 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 2127 Query: 661 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2126 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 2067 Query: 721 gcccggttcatcacg 735 ||||||||||||||| Sbjct: 2066 gcccggttcatcacg 2052 >mfas-RD feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815068, 7818482..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=3091 Length = 3091 Score = 1449 bits (731), Expect = 0.0 Identities = 734/735 (99%) Strand = Plus / Minus Query: 1 gttttaatactatttattttatttatgagaggagattctgagctttttgcggcttccaat 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 3091 gttttaatactatttattttatttatcagaggagattctgagctttttgcggcttccaat 3032 Query: 61 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3031 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 2972 Query: 121 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2971 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 2912 Query: 181 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2911 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 2852 Query: 241 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2851 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 2792 Query: 301 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2791 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 2732 Query: 361 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2731 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 2672 Query: 421 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2671 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 2612 Query: 481 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2611 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 2552 Query: 541 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2551 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 2492 Query: 601 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2491 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 2432 Query: 661 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2431 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 2372 Query: 721 gcccggttcatcacg 735 ||||||||||||||| Sbjct: 2371 gcccggttcatcacg 2357 >mfas-RC feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815263,7818482..7818592, 7818872..7819014);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2966 Length = 2966 Score = 1449 bits (731), Expect = 0.0 Identities = 734/735 (99%) Strand = Plus / Minus Query: 1 gttttaatactatttattttatttatgagaggagattctgagctttttgcggcttccaat 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2966 gttttaatactatttattttatttatcagaggagattctgagctttttgcggcttccaat 2907 Query: 61 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2906 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 2847 Query: 121 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2846 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 2787 Query: 181 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2786 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 2727 Query: 241 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2726 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 2667 Query: 301 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2666 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 2607 Query: 361 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2606 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 2547 Query: 421 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2546 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 2487 Query: 481 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2486 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 2427 Query: 541 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2426 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 2367 Query: 601 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2366 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 2307 Query: 661 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2306 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 2247 Query: 721 gcccggttcatcacg 735 ||||||||||||||| Sbjct: 2246 gcccggttcatcacg 2232 >mfas-RB feature: mRNA loc=3R:complement(7810602..7811227,7811289..7811971, 7812044..7812512,7812575..7812860,7812925..7813116, 7814398..7814539,7814950..7815068,7818482..7818592, 7818989..7819055);ID=FBan0003359;gene_id=FBgn0024211;gene _sym=mfas;sym=CG3359;scaffold=AE003694;len=2695 Length = 2695 Score = 1449 bits (731), Expect = 0.0 Identities = 734/735 (99%) Strand = Plus / Minus Query: 1 gttttaatactatttattttatttatgagaggagattctgagctttttgcggcttccaat 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 2695 gttttaatactatttattttatttatcagaggagattctgagctttttgcggcttccaat 2636 Query: 61 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2635 cagttgacaaatcgttaagagtaaatataaatatctgctttatatatcaatatgcatgag 2576 Query: 121 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2575 atggggacgagcaccgctcagaagaagacatcgaaatcgccctgtggctgatagccagct 2516 Query: 181 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2515 ccgggcgggatcagctggggtcgctgctgttgctggcgctgtgggcgtggcacgatgatg 2456 Query: 241 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2455 tcgttgatctcatggagaattccattggtggccaccacatcgcacttggtgacgccggcg 2396 Query: 301 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2395 ttctcgatcttgggacgacgatcgcgggtgatacgcagatgctggccagagatggactcg 2336 Query: 361 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2335 atggagcggacaaatggccagttggttgggataatgccggcacagcagacaacatcctca 2276 Query: 421 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2275 acgatatgggttttgaccaaggccatgggatcggcgggctttgaaccctcaccggactcg 2216 Query: 481 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2215 ttcagctcctcgaagatatcgttctttggcaccagcagggtgagactcctcgaatcgttg 2156 Query: 541 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2155 gacagcagctgtgtaagattagccttacgaaccagctccaggaacttgctgtagttggga 2096 Query: 601 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2095 ttagcctccagcagcttaagcatgttattcttgggaggcgccaaggcacgatccacctgg 2036 Query: 661 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2035 tggagaacggatccgcagctctcgtcatcgaagtgcaccaaacgggcacagtttaccgtt 1976 Query: 721 gcccggttcatcacg 735 ||||||||||||||| Sbjct: 1975 gcccggttcatcacg 1961 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 27,997 Number of Sequences: 18737 Number of extensions: 27997 Number of successful extensions: 916 Number of sequences better than 1.0e-100: 15 Number of HSP's better than 0.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 901 Number of HSP's gapped (non-prelim): 15 length of query: 735 length of database: 41,270,998 effective HSP length: 17 effective length of query: 718 effective length of database: 40,952,469 effective search space: 29403872742 effective search space used: 29403872742 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG632449|BG632449 GH08762.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH08762 3, mRNA sequence. (674 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,191 Number of Sequences: 18737 Number of extensions: 15191 Number of successful extensions: 251 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 251 Number of HSP's gapped (non-prelim): 0 length of query: 674 length of database: 41,270,998 effective HSP length: 17 effective length of query: 657 effective length of database: 40,952,469 effective search space: 26905772133 effective search space used: 26905772133 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG632467|BG632467 GH09055.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH09055 3 similar to CG4408: FBan0004408 'carboxypeptidase A' located on: 3R 94F1-94F1;: 04/10/2001, mRNA sequence. (829 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG4408-RA feature: mRNA loc=3R:complement(19178268..19180417);ID... 1612 0.0 >CG4408-RA feature: mRNA loc=3R:complement(19178268..19180417);ID=FBan0004408;gene _id=FBgn0039073;gene_sym=CG4408;sym=CG4408;scaffold=AE003 743;len=2150 Length = 2150 Score = 1612 bits (813), Expect = 0.0 Identities = 825/829 (99%) Strand = Plus / Minus Query: 1 aaggttgttcgagtctgactatatttgctttgatttaccaacattattatgaggttttgt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2150 aaggttgttcgagtctgactatatttgctttgatttaccaacattattatgaggttttgt 2091 Query: 61 gtcatgattttgccatcattatttagcattaagaaacgatggcgcgtaatgtgtttttca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2090 gtcatgattttgccatcattatttagcattaagaaacgatggcgcgtaatgtgtttttca 2031 Query: 121 tgtgaactgccatggccagacgacatttatgatcatcatacccatcagatggtgggtgca 180 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 2030 tgtgaactgccatggccagacgacatttatcatcatcatacccatcagatggtgggtgca 1971 Query: 181 tggatgcggattcggaatcggatttgtagttgatggtggaatttcagttagagccggagc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1970 tggatgcggattcggaatcggatttgtagttgatggtggaatttcagttagagccggagc 1911 Query: 241 ccctgatcattggtaatagccacgtttgcctgcctcctgcacgatcgtttggatggatgc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1910 ccctgatcattggtaatagccacgtttgcctgcctcctgcacgatcgtttggatggatgc 1851 Query: 301 gaaggcctcggcagcggtgggttcgatttccttggcggacaaaatgaacagatcctcgct 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1850 gaaggcctcggcagcggtgggttcgatttccttggcggacaaaatgaacagatcctcgct 1791 Query: 361 gtcagcgggtccacgcagttcgtaggagaaggtaatcggtatcttgagctgaccatgggc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1790 gtcagcgggtccacgcagttcgtaggagaaggtaatcggtatcttgagctgaccatgggc 1731 Query: 421 ccaatcctttgagccacctgatgagggatatatggtctcgtagatgctgccactcttgta 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1730 ccaatcctttgagccacctgatgagggatatatggtctcgtagatgctgccactcttgta 1671 Query: 481 gatcctgccgcttacatcctttatcttattggccgccagcttaccaatatcagtcagatc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1670 gatcctgccgcttacatcctttatcttattggccgccagcttaccaatatcagtcagatc 1611 Query: 541 gtgatagttgtccacacgttcggcactgtgtccgtagggaaacatgatcatctgggagta 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1610 gtgatagttgtccacacgttcggcactgtgtccgtagggaaacatgatcatctgggagta 1551 Query: 601 gctgtgcagcgatataaaggtacgtatgcgctcgctttcgacgcgatgccttatgaactc 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1550 gctgtgcagcgatataaaggtacgtatgcgctcgctttcgacgcgatgccttatgaactc 1491 Query: 661 gatcatccgttgggtttccacctcactggcagccgatggtcccgagtagtcatagcggca 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1490 gatcatccgttgggtttccacctcactggcagccgatggtcccgagtagtcatagcggca 1431 Query: 721 aggatctccactggctccggtgacgttccagtggaatggaaagttccggttgagagtcac 780 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 1430 aggatctccactggctccggtgacgttccagtggaatggaaagttccggttgagatccac 1371 Query: 781 accacggcaaatgccacagagagcacgatttttgcgccacatgcgatcg 829 |||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1370 accacggcaaatgccaaagagagcacgatttttgcgccacatgcgatcg 1322 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 17,582 Number of Sequences: 18737 Number of extensions: 17582 Number of successful extensions: 368 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 367 Number of HSP's gapped (non-prelim): 1 length of query: 829 length of database: 41,270,998 effective HSP length: 17 effective length of query: 812 effective length of database: 40,952,469 effective search space: 33253404828 effective search space used: 33253404828 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG632482|BG632482 GH09377.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH09377 3, mRNA sequence. (322 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG3239-RB feature: mRNA loc=X:complement(5234654..5236386,523660... 624 e-179 CG3239-RA feature: mRNA loc=X:complement(5234654..5236386,523645... 624 e-179 >CG3239-RB feature: mRNA loc=X:complement(5234654..5236386, 5236606..5236663);ID=FBan0003239;gene_id=FBgn0029769;gene _sym=CG3239;sym=CG3239;scaffold=AE003434;len=1791 Length = 1791 Score = 624 bits (315), Expect = e-179 Identities = 322/323 (99%), Gaps = 1/323 (0%) Strand = Plus / Minus Query: 1 ggtgtgtaaa-attcgtaagtatattaggagaataaattgcaatttattcatcaatcgtt 59 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1772 ggtgtgtaaacattcgtaagtatattaggagaataaattgcaatttattcatcaatcgtt 1713 Query: 60 ctaaaagttcgttgatccaggcatttgctaatacaatcgacactgccttcgcctgggcga 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1712 ctaaaagttcgttgatccaggcatttgctaatacaatcgacactgccttcgcctgggcga 1653 Query: 120 ggggccacaggagaaggcctcccgaaatggctcaaagtgggcaactgcatcgttgaccct 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1652 ggggccacaggagaaggcctcccgaaatggctcaaagtgggcaactgcatcgttgaccct 1593 Query: 180 cttcctatcgctgccatgatcgtgcgcctgcaagagctccttatcggagcagaagaattg 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1592 cttcctatcgctgccatgatcgtgcgcctgcaagagctccttatcggagcagaagaattg 1533 Query: 240 ggcaaagttatgaaagaactgctgcttctgagtgaccaactcctcggcacttcgattccg 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1532 ggcaaagttatgaaagaactgctgcttctgagtgaccaactcctcggcacttcgattccg 1473 Query: 300 cttatgatccgtttgtgcggtgt 322 ||||||||||||||||||||||| Sbjct: 1472 cttatgatccgtttgtgcggtgt 1450 >CG3239-RA feature: mRNA loc=X:complement(5234654..5236386, 5236451..5236644);ID=FBan0003239;gene_id=FBgn0029769;gene _sym=CG3239;sym=CG3239;scaffold=AE003434;len=1927 Length = 1927 Score = 624 bits (315), Expect = e-179 Identities = 322/323 (99%), Gaps = 1/323 (0%) Strand = Plus / Minus Query: 1 ggtgtgtaaa-attcgtaagtatattaggagaataaattgcaatttattcatcaatcgtt 59 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1908 ggtgtgtaaacattcgtaagtatattaggagaataaattgcaatttattcatcaatcgtt 1849 Query: 60 ctaaaagttcgttgatccaggcatttgctaatacaatcgacactgccttcgcctgggcga 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1848 ctaaaagttcgttgatccaggcatttgctaatacaatcgacactgccttcgcctgggcga 1789 Query: 120 ggggccacaggagaaggcctcccgaaatggctcaaagtgggcaactgcatcgttgaccct 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1788 ggggccacaggagaaggcctcccgaaatggctcaaagtgggcaactgcatcgttgaccct 1729 Query: 180 cttcctatcgctgccatgatcgtgcgcctgcaagagctccttatcggagcagaagaattg 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1728 cttcctatcgctgccatgatcgtgcgcctgcaagagctccttatcggagcagaagaattg 1669 Query: 240 ggcaaagttatgaaagaactgctgcttctgagtgaccaactcctcggcacttcgattccg 299 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1668 ggcaaagttatgaaagaactgctgcttctgagtgaccaactcctcggcacttcgattccg 1609 Query: 300 cttatgatccgtttgtgcggtgt 322 ||||||||||||||||||||||| Sbjct: 1608 cttatgatccgtttgtgcggtgt 1586 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7914 Number of Sequences: 18737 Number of extensions: 7914 Number of successful extensions: 532 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 528 Number of HSP's gapped (non-prelim): 4 length of query: 322 length of database: 41,270,998 effective HSP length: 16 effective length of query: 306 effective length of database: 40,971,206 effective search space: 12537189036 effective search space used: 12537189036 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG632553|BG632553 GH10483.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH10483 3 similar to Cyp28a5: FBan0008864 'cytochrome P450' located on: 2L 34E2-34E2;: 04/10/2001, mRNA sequence. (693 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Cyp28a5-RA feature: mRNA loc=2L:join(13959455..13959699,13959844... 1374 0.0 >Cyp28a5-RA feature: mRNA loc=2L:join(13959455..13959699,13959844..13960090, 13960155..13960259,13960347..13960893,13960960..13961226, 13961368..13961725);ID=FBan0008864;gene_id=FBgn0028940;ge ne_sym=Cyp28a5;sym=CG8864;scaffold=AE003642;len=1769 Length = 1769 Score = 1374 bits (693), Expect = 0.0 Identities = 693/693 (100%) Strand = Plus / Minus Query: 1 atatacgaaatatatttaatatagaaacaacaaatatacatatgcaataacaaagtcagc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1765 atatacgaaatatatttaatatagaaacaacaaatatacatatgcaataacaaagtcagc 1706 Query: 61 caattgcgagcttaagtgtaccactgggtatacatatcaaatattctgtaaaaatagact 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1705 caattgcgagcttaagtgtaccactgggtatacatatcaaatattctgtaaaaatagact 1646 Query: 121 ggggaactacgccactcaattttcacattagtttccgtcgctggtggggagttattaagt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1645 ggggaactacgccactcaattttcacattagtttccgtcgctggtggggagttattaagt 1586 Query: 181 aattgaatctctaaagcttttcaaggtcgagccaaatgcccccacgcagaccagtgataa 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1585 aattgaatctctaaagcttttcaaggtcgagccaaatgcccccacgcagaccagtgataa 1526 Query: 241 tttggccgggttcataatcattgtctttgcgggttttgtcattgatcttgacattgaact 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1525 tttggccgggttcataatcattgtctttgcgggttttgtcattgatcttgacattgaact 1466 Query: 301 ttgatatcagttccacaatagcagccttaatctggaccgtcgcaaatcgcattccaatgc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1465 ttgatatcagttccacaatagcagccttaatctggaccgtcgcaaatcgcattccaatgc 1406 Query: 361 acacacgcggtccatccccgaatcccatgaagacaccccgttccctaaatgtttttgcag 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1405 acacacgcggtccatccccgaatcccatgaagacaccccgttccctaaatgtttttgcag 1346 Query: 421 catctggctccaggaatcgctcgggctggaaggactggggattgggaaagaattcctcat 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1345 catctggctccaggaatcgctcgggctggaaggactggggattgggaaagaattcctcat 1286 Query: 481 ccagcatgaagcagtagtgaggtacaaccacagtggtgcccttctccacgacgaagttgg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1285 ccagcatgaagcagtagtgaggtacaaccacagtggtgcccttctccacgacgaagttgg 1226 Query: 541 gaccttccttgttgggaatctcgatggattcggtgcacagtttattcgacataaatccgg 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1225 gaccttccttgttgggaatctcgatggattcggtgcacagtttattcgacataaatccgg 1166 Query: 601 gcgggaagagtcggatggtttcctgcacacaagcgtccaggtagggcaaatcgctaagct 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1165 gcgggaagagtcggatggtttcctgcacacaagcgtccaggtagggcaaatcgctaagct 1106 Query: 661 tttcaaaggcaatggtgccatcctgcagatggg 693 ||||||||||||||||||||||||||||||||| Sbjct: 1105 tttcaaaggcaatggtgccatcctgcagatggg 1073 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,976 Number of Sequences: 18737 Number of extensions: 14976 Number of successful extensions: 321 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 320 Number of HSP's gapped (non-prelim): 1 length of query: 693 length of database: 41,270,998 effective HSP length: 17 effective length of query: 676 effective length of database: 40,952,469 effective search space: 27683869044 effective search space used: 27683869044 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG632558|BG632558 GH10550.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH10550 3 similar to Acon: FBan0009244 'enzyme' located on: 2L 39B3-39B4;: 04/10/2001, mRNA sequence. (589 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Acon-RB feature: mRNA loc=2L:join(21138100..21138548,21139935..2... 1168 0.0 >Acon-RB feature: mRNA loc=2L:join(21138100..21138548,21139935..21141572, 21141639..21142142, 21142204..21142768);ID=FBan0009244;gene_id=FBgn0010100;ge ne_sym=Acon;sym=CG9244;scaffold=AE003669;len=3156 Length = 3156 Score = 1168 bits (589), Expect = 0.0 Identities = 589/589 (100%) Strand = Plus / Minus Query: 1 aatacatattacttgagttttattcgcacttaaaacagtttcatagtagaggcaatctgt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3149 aatacatattacttgagttttattcgcacttaaaacagtttcatagtagaggcaatctgt 3090 Query: 61 agagcatttggacaaattcaaaaagaacaaaaattgaaggaaacgcatgcatagccagaa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3089 agagcatttggacaaattcaaaaagaacaaaaattgaaggaaacgcatgcatagccagaa 3030 Query: 121 ttaaaaataaaattgtgtataattatatatataaaactcttacaatttctcgctatcgtt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3029 ttaaaaataaaattgtgtataattatatatataaaactcttacaatttctcgctatcgtt 2970 Query: 181 cggctacataattcacttttaaagctgcacactcgatatagtcaaaatataatataaaca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2969 cggctacataattcacttttaaagctgcacactcgatatagtcaaaatataatataaaca 2910 Query: 241 atttgaaaagaattgaataacaataccataattcgattgcttccgttgtgaatttgagtg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2909 atttgaaaagaattgaataacaataccataattcgattgcttccgttgtgaatttgagtg 2850 Query: 301 tgttcacctacaggaagaaggttgggatcaggcttcttgactgggtgtcttaagtaggtc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2849 tgttcacctacaggaagaaggttgggatcaggcttcttgactgggtgtcttaagtaggtc 2790 Query: 361 caggaccatttactgggccagctccttcatgcggttgagagcgctgccggccttgaacca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2789 caggaccatttactgggccagctccttcatgcggttgagagcgctgccggccttgaacca 2730 Query: 421 gccgatctgtaggtcgttcagggtgtggttaagcttgatcctctcgaccttgtcgccatt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2729 gccgatctgtaggtcgttcagggtgtggttaagcttgatcctctcgaccttgtcgccatt 2670 Query: 481 cttgatttcggcatctacgggctttccaggcgcaagggatttcaggttgagcagggagat 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2669 cttgatttcggcatctacgggctttccaggcgcaagggatttcaggttgagcagggagat 2610 Query: 541 tttgctcgtgggctggatcttatcgtaatcagcgggattggcgaaggtg 589 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2609 tttgctcgtgggctggatcttatcgtaatcagcgggattggcgaaggtg 2561 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,645 Number of Sequences: 18737 Number of extensions: 15645 Number of successful extensions: 463 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 462 Number of HSP's gapped (non-prelim): 1 length of query: 589 length of database: 41,270,998 effective HSP length: 17 effective length of query: 572 effective length of database: 40,952,469 effective search space: 23424812268 effective search space used: 23424812268 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG632702|BG632702 GH12586.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH12586 3 similar to Gapdh2: FBan0008893 located on: X 13F6-13F6;: 04/10/2001, mRNA sequence. (481 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Gapdh1-RA feature: mRNA loc=2R:complement(2852799..2854281);ID=F... 906 0.0 >Gapdh1-RA feature: mRNA loc=2R:complement(2852799..2854281);ID=FBan0012055;gene_i d=FBgn0001091;gene_sym=Gapdh1;sym=CG12055;scaffold=AE0038 39;len=1483 Length = 1483 Score = 906 bits (457), Expect = 0.0 Identities = 473/481 (98%) Strand = Plus / Minus Query: 1 acagtaacagggcgatactttattcaacaacaataaatatgtagctttgcgtaattatgg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1432 acagtaacagggcgatactttattcaacaacaataaatatgtagctttgcgtaattatgg 1373 Query: 61 ctattttgtgcatttgnnnnnnnngcatcctcaattgcgccccttgcggattatgcaaca 120 |||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 1372 ctattttgtgcatttgaaaaaaaagcatcctcaattgcgccccttgcggattatgcaaca 1313 Query: 121 gtgattcccgaccagctgctgggcgccgggtttgtacgatagttttggctagtttagtcc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1312 gtgattcccgaccagctgctgggcgccgggtttgtacgatagttttggctagtttagtcc 1253 Query: 181 ttgctctgcatatacttgatcaggtcgatgacgcggttggagtaaccgaactcgttgtcg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1252 ttgctctgcatatacttgatcaggtcgatgacgcggttggagtaaccgaactcgttgtcg 1193 Query: 241 taccacgagattagcttgacgaacttatcgttcagcgaaatgccagccttggcgtcgaac 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1192 taccacgagattagcttgacgaacttatcgttcagcgaaatgccagccttggcgtcgaac 1133 Query: 301 acagacgaatgggtgtcgctgaagaagtcggtggagaccacctcctcatcggtgtagccc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1132 acagacgaatgggtgtcgctgaagaagtcggtggagaccacctcctcatcggtgtagccc 1073 Query: 361 aggattcccttcaggggtcccttggaggcctcctcgaccttagccttgatttcgtcatag 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1072 aggattcccttcaggggtcccttggaggcctcctcgaccttagccttgatttcgtcatag 1013 Query: 421 gtggctcccttgcccaagcggacggtaagatccacaacggagacattgggcgtgggcacg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1012 gtggctcccttgcccaagcggacggtaagatccacaacggagacattgggcgtgggcacg 953 Query: 481 c 481 | Sbjct: 952 c 952 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,856 Number of Sequences: 18737 Number of extensions: 11856 Number of successful extensions: 317 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 315 Number of HSP's gapped (non-prelim): 2 length of query: 481 length of database: 41,270,998 effective HSP length: 17 effective length of query: 464 effective length of database: 40,952,469 effective search space: 19001945616 effective search space used: 19001945616 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG632994|BG632994 GH18008.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH18008 3 similar to CG4716: FBan0004716 located on: 2R 50A1-50A1;: 04/10/2001, mRNA sequence. (364 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9009 Number of Sequences: 18737 Number of extensions: 9009 Number of successful extensions: 842 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 842 Number of HSP's gapped (non-prelim): 0 length of query: 364 length of database: 41,270,998 effective HSP length: 17 effective length of query: 347 effective length of database: 40,952,469 effective search space: 14210506743 effective search space used: 14210506743 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|BG632998|BG632998 GH18038.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH18038 3 similar to Tequila: FBan0004821 'endopeptidase' located on: 3L 66F4-66F4;: 04/10/2001, mRNA sequence. (321 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Tequila-RD feature: mRNA loc=3L:join(9033368..9033539,9033774..9... 630 e-180 Tequila-RA feature: mRNA loc=3L:join(9033392..9033539,9033774..9... 630 e-180 Tequila-RB feature: mRNA loc=3L:join(9045910..9045977,9046034..9... 624 e-179 >Tequila-RD feature: mRNA loc=3L:join(9033368..9033539,9033774..9034332, 9046559..9048658,9048729..9049120,9049178..9049333, 9049395..9050175,9050243..9050335,9050447..9050530, 9050592..9050835);ID=FBan0004821;gene_id=FBgn0023479;gene _sym=Tequila;sym=CG4821;scaffold=AE003553;len=4581 Length = 4581 Score = 630 bits (318), Expect = e-180 Identities = 318/318 (100%) Strand = Plus / Minus Query: 4 cgttctaaaaaagtctgctttattagcaagttcactacaaaattcttataaattagtagt 63 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4580 cgttctaaaaaagtctgctttattagcaagttcactacaaaattcttataaattagtagt 4521 Query: 64 catgtaagaaggtggatattaaagtgtaaagtgagtatatgctcccttaaaagcgtagca 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4520 catgtaagaaggtggatattaaagtgtaaagtgagtatatgctcccttaaaagcgtagca 4461 Query: 124 agctctcattgattttctcgtagatccaatcgatatagtgattcacacggacgtagacac 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4460 agctctcattgattttctcgtagatccaatcgatatagtgattcacacggacgtagacac 4401 Query: 184 ccggtctgttcttgaagccgcagtgctgaccccacgaaataagcccgtacagagtctcgc 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4400 ccggtctgttcttgaagccgcagtgctgaccccacgaaataagcccgtacagagtctcgc 4341 Query: 244 catcgtcatcggagcagacaagtggaccgcctgagtcaccttcacaggcatccacactct 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4340 catcgtcatcggagcagacaagtggaccgcctgagtcaccttcacaggcatccacactct 4281 Query: 304 cgtccatggagccggcgc 321 |||||||||||||||||| Sbjct: 4280 cgtccatggagccggcgc 4263 >Tequila-RA feature: mRNA loc=3L:join(9033392..9033539,9033774..9034332, 9034382..9034576,9034730..9034975,9035029..9035505, 9035568..9035670,9043196..9043629,9043768..9044010, 9044075..9044539,9044598..9045977,9046034..9046498, 9046559..9048658,9048729..9049120,9049178..9049333, 9049395..9050175,9050243..9050335,9050447..9050530, 9050592..9050835);ID=FBan0004821;gene_id=FBgn0023479;gene _sym=Tequila;sym=CG4821;scaffold=AE003553;len=8565 Length = 8565 Score = 630 bits (318), Expect = e-180 Identities = 318/318 (100%) Strand = Plus / Minus Query: 4 cgttctaaaaaagtctgctttattagcaagttcactacaaaattcttataaattagtagt 63 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8564 cgttctaaaaaagtctgctttattagcaagttcactacaaaattcttataaattagtagt 8505 Query: 64 catgtaagaaggtggatattaaagtgtaaagtgagtatatgctcccttaaaagcgtagca 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8504 catgtaagaaggtggatattaaagtgtaaagtgagtatatgctcccttaaaagcgtagca 8445 Query: 124 agctctcattgattttctcgtagatccaatcgatatagtgattcacacggacgtagacac 183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8444 agctctcattgattttctcgtagatccaatcgatatagtgattcacacggacgtagacac 8385 Query: 184 ccggtctgttcttgaagccgcagtgctgaccccacgaaataagcccgtacagagtctcgc 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8384 ccggtctgttcttgaagccgcagtgctgaccccacgaaataagcccgtacagagtctcgc 8325 Query: 244 catcgtcatcggagcagacaagtggaccgcctgagtcaccttcacaggcatccacactct 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8324 catcgtcatcggagcagacaagtggaccgcctgagtcaccttcacaggcatccacactct 8265 Query: 304 cgtccatggagccggcgc 321 |||||||||||||||||| Sbjct: 8264 cgtccatggagccggcgc 8247 >Tequila-RB feature: mRNA loc=3L:join(9045910..9045977,9046034..9046498, 9046559..9048658,9048729..9049120,9049178..9049333, 9049395..9050175,9050243..9050335,9050447..9050530, 9050592..9050831);ID=FBan0004821;gene_id=FBgn0023479;gene _sym=Tequila;sym=CG4821;scaffold=AE003553;len=4379 Length = 4379 Score = 624 bits (315), Expect = e-179 Identities = 315/315 (100%) Strand = Plus / Minus Query: 7 tctaaaaaagtctgctttattagcaagttcactacaaaattcttataaattagtagtcat 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4379 tctaaaaaagtctgctttattagcaagttcactacaaaattcttataaattagtagtcat 4320 Query: 67 gtaagaaggtggatattaaagtgtaaagtgagtatatgctcccttaaaagcgtagcaagc 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4319 gtaagaaggtggatattaaagtgtaaagtgagtatatgctcccttaaaagcgtagcaagc 4260 Query: 127 tctcattgattttctcgtagatccaatcgatatagtgattcacacggacgtagacacccg 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4259 tctcattgattttctcgtagatccaatcgatatagtgattcacacggacgtagacacccg 4200 Query: 187 gtctgttcttgaagccgcagtgctgaccccacgaaataagcccgtacagagtctcgccat 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4199 gtctgttcttgaagccgcagtgctgaccccacgaaataagcccgtacagagtctcgccat 4140 Query: 247 cgtcatcggagcagacaagtggaccgcctgagtcaccttcacaggcatccacactctcgt 306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4139 cgtcatcggagcagacaagtggaccgcctgagtcaccttcacaggcatccacactctcgt 4080 Query: 307 ccatggagccggcgc 321 ||||||||||||||| Sbjct: 4079 ccatggagccggcgc 4065 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5496 Number of Sequences: 18737 Number of extensions: 5496 Number of successful extensions: 420 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 417 Number of HSP's gapped (non-prelim): 3 length of query: 321 length of database: 41,270,998 effective HSP length: 16 effective length of query: 305 effective length of database: 40,971,206 effective search space: 12496217830 effective search space used: 12496217830 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AQ025445|AQ025445 EP(X)1408 Drosophila melanogaster EP line Drosophila melanogaster genomic Sequence recovered from 5' end of P element, DNA sequence. (144 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 360 Number of Sequences: 18737 Number of extensions: 360 Number of successful extensions: 37 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37 Number of HSP's gapped (non-prelim): 0 length of query: 144 length of database: 41,270,998 effective HSP length: 16 effective length of query: 128 effective length of database: 40,971,206 effective search space: 5244314368 effective search space used: 5244314368 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA201639|DMAA1639 LD04705.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD04705 5 similar to CG4049: FBan0004049 'enzyme' located on: 2R 60B5-60B6;: 04/10/2001, mRNA sequence. (511 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG4049-RB feature: mRNA loc=2R:complement(19151474..19152219,191... 825 0.0 CG4049-RA feature: mRNA loc=2R:complement(19151474..19152219,191... 825 0.0 >CG4049-RB feature: mRNA loc=2R:complement(19151474..19152219,19152269..19152502, 19152560..19152671,19152737..19153406, 19153470..19153637,19154479..19156839, 19157573..19157838);ID=FBan0004049;gene_id=FBgn0034976;g ene_sym=CG4049;sym=CG4049;scaffold=AE003463;len=4557 Length = 4557 Score = 825 bits (416), Expect = 0.0 Identities = 416/416 (100%) Strand = Plus / Plus Query: 1 tatatacaaacgtacatgttgaaaacagcgagaaaataaatcgagaataacattttaaat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tatatacaaacgtacatgttgaaaacagcgagaaaataaatcgagaataacattttaaat 60 Query: 61 taatataataacaatcggaaggacttggtcctcgcaatcacagtggcgcacgcgataagc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 taatataataacaatcggaaggacttggtcctcgcaatcacagtggcgcacgcgataagc 120 Query: 121 caagtatctcaagaacgttcaccaattaagagaacctcccaatcgtgcacatagaaaaat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 caagtatctcaagaacgttcaccaattaagagaacctcccaatcgtgcacatagaaaaat 180 Query: 181 atccatatgtataaaataacaataattaagaacctgcgttgttaattcttttatctgaaa 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 atccatatgtataaaataacaataattaagaacctgcgttgttaattcttttatctgaaa 240 Query: 241 accccgttcgccggctgcatgtaaatggataatccagaagccaacatggaagagtcaaac 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 accccgttcgccggctgcatgtaaatggataatccagaagccaacatggaagagtcaaac 300 Query: 301 ccaaattacgatgttaaccaaagactacaaaagccggagggttggccgcacgtcaatgag 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 ccaaattacgatgttaaccaaagactacaaaagccggagggttggccgcacgtcaatgag 360 Query: 361 ttccatccctccatgatgtatccggatgatcccaggcggtacttccacaatgcctc 416 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 ttccatccctccatgatgtatccggatgatcccaggcggtacttccacaatgcctc 416 >CG4049-RA feature: mRNA loc=2R:complement(19151474..19152219,19152269..19152502, 19152560..19152671,19152737..19153406, 19153834..19154334,19154479..19156839, 19157573..19157838);ID=FBan0004049;gene_id=FBgn0034976;g ene_sym=CG4049;sym=CG4049;scaffold=AE003463;len=4890 Length = 4890 Score = 825 bits (416), Expect = 0.0 Identities = 416/416 (100%) Strand = Plus / Plus Query: 1 tatatacaaacgtacatgttgaaaacagcgagaaaataaatcgagaataacattttaaat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tatatacaaacgtacatgttgaaaacagcgagaaaataaatcgagaataacattttaaat 60 Query: 61 taatataataacaatcggaaggacttggtcctcgcaatcacagtggcgcacgcgataagc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 taatataataacaatcggaaggacttggtcctcgcaatcacagtggcgcacgcgataagc 120 Query: 121 caagtatctcaagaacgttcaccaattaagagaacctcccaatcgtgcacatagaaaaat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 caagtatctcaagaacgttcaccaattaagagaacctcccaatcgtgcacatagaaaaat 180 Query: 181 atccatatgtataaaataacaataattaagaacctgcgttgttaattcttttatctgaaa 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 atccatatgtataaaataacaataattaagaacctgcgttgttaattcttttatctgaaa 240 Query: 241 accccgttcgccggctgcatgtaaatggataatccagaagccaacatggaagagtcaaac 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 accccgttcgccggctgcatgtaaatggataatccagaagccaacatggaagagtcaaac 300 Query: 301 ccaaattacgatgttaaccaaagactacaaaagccggagggttggccgcacgtcaatgag 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 ccaaattacgatgttaaccaaagactacaaaagccggagggttggccgcacgtcaatgag 360 Query: 361 ttccatccctccatgatgtatccggatgatcccaggcggtacttccacaatgcctc 416 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 ttccatccctccatgatgtatccggatgatcccaggcggtacttccacaatgcctc 416 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9507 Number of Sequences: 18737 Number of extensions: 9507 Number of successful extensions: 208 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 204 Number of HSP's gapped (non-prelim): 4 length of query: 511 length of database: 41,270,998 effective HSP length: 17 effective length of query: 494 effective length of database: 40,952,469 effective search space: 20230519686 effective search space used: 20230519686 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA202251|DMAA2251 LD02396.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD02396 5, mRNA sequence. (575 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value AlkB-RA feature: mRNA loc=X:complement(15589148..15589551,155896... 1140 0.0 >AlkB-RA feature: mRNA loc=X:complement(15589148..15589551,15589614..15590155, 15590207..15590501);ID=FBan0033250;gene_id=FBgn0053250;g ene_sym=AlkB;sym=CG33250;scaffold=AE003500;len=1241 Length = 1241 Score = 1140 bits (575), Expect = 0.0 Identities = 575/575 (100%) Strand = Plus / Plus Query: 1 caatgtctcttatgaattgcattcatttttaatttttatatctatcccatagtatttcca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 caatgtctcttatgaattgcattcatttttaatttttatatctatcccatagtatttcca 60 Query: 61 ccacatgtctgatttctaaacgtgctcaaaagcatttaagatttctccaaacgcagtcac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ccacatgtctgatttctaaacgtgctcaaaagcatttaagatttctccaaacgcagtcac 120 Query: 121 actattgctatcgtttatattaacttattgtttatattgtacttattgtttatgaagcat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 actattgctatcgtttatattaacttattgtttatattgtacttattgtttatgaagcat 180 Query: 181 gttcaagctagtttttaagcagtacaagtgcaaaagtaccagtcctgatttaacggaagt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 gttcaagctagtttttaagcagtacaagtgcaaaagtaccagtcctgatttaacggaagt 240 Query: 241 tgttaagatcgatgattgtgtagtcaaggggaatgatcaagaaaagagtgataataatat 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 tgttaagatcgatgattgtgtagtcaaggggaatgatcaagaaaagagtgataataatat 300 Query: 301 tgttcaacgattaagtatcagcaatgtagaaagcctacagacaatgccaggcgttaaatc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 tgttcaacgattaagtatcagcaatgtagaaagcctacagacaatgccaggcgttaaatc 360 Query: 361 gccaaaagattggcgaacctatacattaactaaccatcccggcattattgtgattcggaa 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 gccaaaagattggcgaacctatacattaactaaccatcccggcattattgtgattcggaa 420 Query: 421 tccattctcggaacgaggccggcgttattggagcgcccgatgtctgcgggattttccgcg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 tccattctcggaacgaggccggcgttattggagcgcccgatgtctgcgggattttccgcg 480 Query: 481 aacgccaaatatagtcaatttaaatgaaaggctcttcgatgaatccgtcaggtcggactg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 aacgccaaatatagtcaatttaaatgaaaggctcttcgatgaatccgtcaggtcggactg 540 Query: 541 gtggaaacagcttaatctgtgcagcgatggcgttg 575 ||||||||||||||||||||||||||||||||||| Sbjct: 541 gtggaaacagcttaatctgtgcagcgatggcgttg 575 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,469 Number of Sequences: 18737 Number of extensions: 11469 Number of successful extensions: 227 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 226 Number of HSP's gapped (non-prelim): 1 length of query: 575 length of database: 41,270,998 effective HSP length: 17 effective length of query: 558 effective length of database: 40,952,469 effective search space: 22851477702 effective search space used: 22851477702 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA202301|DMAA2301 LD02456.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD02456 5prime, mRNA sequence. (533 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value wdb-RA feature: mRNA loc=3R:complement(23380125..23380941,233810... 545 e-154 >wdb-RA feature: mRNA loc=3R:complement(23380125..23380941,23381005..23381234, 23381294..23381627,23381692..23381882, 23381948..23382142,23382239..23382438, 23382503..23383292,23383366..23383678, 23396768..23397294);ID=FBan0005643;gene_id=FBgn0027492;g ene_sym=wdb;sym=CG5643;scaffold=AE003761;len=3597 Length = 3597 Score = 545 bits (275), Expect = e-154 Identities = 289/296 (97%) Strand = Plus / Plus Query: 1 attctagttgccgctggagaaaattcgtaattctcgcataaagcgcacctgccggttacc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 27 attctagttgccgctggagaaaattcgtaattctcgcataaagcgcacctgccggttacc 86 Query: 61 aaaatcgattgaaaagcgaacgtcccatattgcggcgcgataagcgggtgaaattgtggc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 87 aaaatcgattgaaaagcgaacgtcccatattgcggcgcgataagcgggtgaaattgtggc 146 Query: 121 agtgcgtgcgcgatagactgttagaaaagcagtgcaaattggaagtccggatgctcgaag 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 147 agtgcgtgcgcgatagactgttagaaaagcagtgcaaattggaagtccggatgctcgaag 206 Query: 181 gtgtgtgtgtgcgtcgcnnnnnnngtgcggttttcagctgcagtcggccaacagtgcaac 240 ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 207 gtgtgtgtgtgcgtcgctttttttgtgcggttttcagctgcagtcggccaacagtgcaac 266 Query: 241 gcaaacattgtgttctaaattacataaagcagggaatttctgcacgaaggcaaccg 296 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 267 gcaaacattgtgttctaaattacataaagcagggaatttctgcacgaaggcaaccg 322 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,676 Number of Sequences: 18737 Number of extensions: 13676 Number of successful extensions: 341 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 338 Number of HSP's gapped (non-prelim): 2 length of query: 533 length of database: 41,270,998 effective HSP length: 17 effective length of query: 516 effective length of database: 40,952,469 effective search space: 21131474004 effective search space used: 21131474004 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA202560|DMAA2560 LD02743.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD02743 5 similar to CG2093: FBan0002093 GO:[] located on: 2R 43D7-43E1;: 08/13/2002, mRNA sequence. (568 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG2093-RA feature: mRNA loc=2R:join(2628166..2628265,2629780..26... 1074 0.0 >CG2093-RA feature: mRNA loc=2R:join(2628166..2628265,2629780..2629866, 2629933..2630130,2630201..2630554,2630611..2630832, 2631168..2631332,2631385..2632900,2632962..2633592, 2633648..2633803,2633865..2634207,2634274..2634419, 2634483..2634729,2634787..2635059,2635128..2635340, 2635400..2635509,2635576..2636175,2636299..2636826, 2636888..2637046,2637108..2637716,2637778..2637905, 2637963..2638805,2638879..2639251,2639327..2640148, 2640211..2640311,2640377..2640515,2640577..2640860, 2640932..2641070, 2641130..2641576);ID=FBan0002093;gene_id=FBgn0033194;gene _sym=CG2093;sym=CG2093;scaffold=AE003840;len=9933 Length = 9933 Score = 1074 bits (542), Expect = 0.0 Identities = 552/556 (99%) Strand = Plus / Plus Query: 13 gcagcatggtgcagcgcatcatgccgaactcaactgtgcgtcagttcaagtacgccagga 72 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8240 gcagcatggtgcagcgcatcatgccgaactcaactgtgcgtcagttcaagtacgccagga 8299 Query: 73 tactgatccaagagttcctcttcaaagtcgatttgaacttccttactgccatcgccgaaa 132 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8300 tactgatccaagagttcctcttcaaagtcgatttgaacttccttactgccatcgccgaaa 8359 Query: 133 tgtttgccaaggaggtctcggacgaggcagcagctaagcagttccgtcagantgttgaat 192 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 8360 tgtttgccaaggaggtctcggacgaggcagcagctaagcagttccgtcaggatgttgaat 8419 Query: 193 caattgagctcccgctttcagcgttctttgaagagcactcgttggaggagcagaagagct 252 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8420 caattgagctcccgctttcagcgttctttgaagagcactcgttggaggagcagaagagct 8479 Query: 253 tttacgataacctgcatttgggtccgctcaagatccatgtcagcttctcgatggccgggt 312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8480 tttacgataacctgcatttgggtccgctcaagatccatgtcagcttctcgatggccgggt 8539 Query: 313 cggacacaaaggcgttgcccggtttcttgggctcattggtccagggcgtgggtgtgactc 372 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8540 cggacacaaaggcgttgcccggtttcttgggctcattggtccagggcgtgggtgtgactc 8599 Query: 373 taacggacgtaaacgatgttgttttccgtctggccttcttcgagcgcgagtatcaattct 432 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8600 taacggacgtaaacgatgttgttttccgtctggccttcttcgagcgcgagtatcaattct 8659 Query: 433 tctcccaaaagcagctaatcaacgagatcacctcacactacactggccaagcgttaaagc 492 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 8660 tctcccaaaagcagctaatcaacgagatcacctcacactacactggccaagcgttaaagc 8719 Query: 493 agctgtatgtgctcgtcctcggacttgatgntctgggcaatccctatggcctagtggttg 552 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 8720 agctgtatgtgctcgtcctcggacttgatgtcctgggcaatccctatggcctagtggttg 8779 Query: 553 gtcttaagaagggcgt 568 |||||||||||||||| Sbjct: 8780 gtcttaagaagggcgt 8795 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,121 Number of Sequences: 18737 Number of extensions: 13121 Number of successful extensions: 322 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 321 Number of HSP's gapped (non-prelim): 1 length of query: 568 length of database: 41,270,998 effective HSP length: 17 effective length of query: 551 effective length of database: 40,952,469 effective search space: 22564810419 effective search space used: 22564810419 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA246707|DMAA46707 LD05774.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD05774 5prime, mRNA sequence. (586 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG15893-RA feature: mRNA loc=X:6071215..6073143;ID=FBan0015893;g... 924 0.0 >CG15893-RA feature: mRNA loc=X:6071215..6073143;ID=FBan0015893;gene_id=FBgn002986 5;gene_sym=CG15893;sym=CG15893;scaffold=AE003437;len=192 9 Length = 1929 Score = 924 bits (466), Expect = 0.0 Identities = 482/485 (99%), Gaps = 2/485 (0%) Strand = Plus / Plus Query: 93 tccaagcaaaacgagccgaaagaccgttttatttctttttgttttgtgttctgaaagaga 152 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 125 tccaagcaaaacgagccgaaagaccgttttatttctttttgttttgtgttctgaaagaga 184 Query: 153 gagggaaaaaggcaagcagcagaaagtgatcgagatggcgttcatgatgcccgtgatgaa 212 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 185 gagggaaaaaggcaagcagcagaaagtgatcgagatggcgttcatgatgcccgtgatgaa 244 Query: 213 gaacaattacgatatttacaaggacacgcgttcccgcaaaacgtcagaatgttcgaatgc 272 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 245 gaacaattacgatatttacaaggacacgcgttcccgcaaaacgtcagaatgttcgaatgc 304 Query: 273 gagtagtaacggtacaacggctttggccaccgctcttggaacgcccgcccagggacaaca 332 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 305 gagtagtaacggtacaacggctttggccaccgctcttggaacgcccgcccagggacaaca 364 Query: 333 acaacagcgacgccgcaaggtgtccgaatgcaagtcggagagcttcgccacctcaccatc 392 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 365 acaacagcgacgccgcaaggtgtccgaatgcaagtcggagagcttcgccacctcaccatc 424 Query: 393 gcacggtcaactgggcgtgtcctccccccaccaaaggatgcaaatgcagcgctgccacag 452 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 425 gcacggtcaactgggcgtgtcctccccccaccaaaggatgcaaatgcagcgctgccacag 484 Query: 453 ttcgcgcgcttttccacgcaacgcatcgcgcagttcgcacggttcgctgcagcaaatggt 512 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 485 ttcgcgcgcttttccacgcaacgcatcgcgcagttcgcacggttcgctgcagcaaatggt 544 Query: 513 ngtcg-ccacgcgcagtagtccgcncagccgctcgcacaccgcatccgcactggaaaggc 571 |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 545 -gtcgcccacgcgcagtagtccgcccagccgctcgcacaccgcatccgcactggaaaggc 603 Query: 572 aggcg 576 ||||| Sbjct: 604 aggcg 608 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 18,158 Number of Sequences: 18737 Number of extensions: 18158 Number of successful extensions: 800 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 797 Number of HSP's gapped (non-prelim): 2 length of query: 586 length of database: 41,270,998 effective HSP length: 17 effective length of query: 569 effective length of database: 40,952,469 effective search space: 23301954861 effective search space used: 23301954861 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA246803|DMAA46803 LD05795.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD05795 5prime, mRNA sequence. (596 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG2183-RA feature: mRNA loc=2R:join(3228694..3228873,3228937..32... 1074 0.0 >CG2183-RA feature: mRNA loc=2R:join(3228694..3228873,3228937..3229820, 3229876..3229938,3229992..3230187, 3230251..3230838);ID=FBan0002183;gene_id=FBgn0033273;gen e_sym=CG2183;sym=CG2183;scaffold=AE003838;len=1911 Length = 1911 Score = 1074 bits (542), Expect = 0.0 Identities = 563/570 (98%) Strand = Plus / Plus Query: 27 tacgagggtttcaacttctcggataaggtgaaaccctcgaaaccagctccttacgtggat 86 ||||| || ||| ||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 154 tacgatggattctacttctcggataaggtgaaacgctcgaaaccagctccttacgtggat 213 Query: 87 cccgagcaaaagctctacgatgcagtcgtcgctggggatctcaagacgatgcaggaggag 146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 214 cccgagcaaaagctctacgatgcagtcgtcgctggggatctcaagacgatgcaggaggag 273 Query: 147 atgcgcaaactcgtcctccaagtggatcagccagtaaaaggtggtcttaacttactgatg 206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 274 atgcgcaaactcgtcctccaagtggatcagccagtaaaaggtggtcttaacttactgatg 333 Query: 207 ctcgcctgtcgcgagggccactacaaaatagttgaatggctgctggaaagggcaggggcc 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 334 ctcgcctgtcgcgagggccactacaaaatagttgaatggctgctggaaagggcaggggcc 393 Query: 267 aacgtgaatcggcagctggattccttgatgccgctgatgatggcctgcaataccacccac 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 394 aacgtgaatcggcagctggattccttgatgccgctgatgatggcctgcaataccacccac 453 Query: 327 aaggatccgtgcctggcggagagaattgtgggcctgctcttgcggcacggagccgtgatc 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 454 aaggatccgtgcctggcggagagaattgtgggcctgctcttgcggcacggagccgtgatc 513 Query: 387 aatgtttcggaaaaatatggaatgacaccctttatgttcgcctgccaaaatggctttgcg 446 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 514 aatgtttcggaaaaatatggaatgacaccctttatgttcgcctgccaaaatggctttgcc 573 Query: 447 gccgttgtgcgtctgcttattaaggatgctagtttcgatgctgtggataatcagggctgc 506 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 574 ggcgttgtgcgtctgcttattaaggatgctagtttcgatgctgtggataatcagggctgc 633 Query: 507 actgccatctttcatgccatcgagaacaatcacgtggaagtggtcaagctgttggtggag 566 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 634 actgccatctttcatgccatcgagaaaaatcacgtggaagtggtcaagctgttggtggag 693 Query: 567 gcgggcgcgaatgccacgatagccaacaac 596 |||||||||||||||||||||||||||||| Sbjct: 694 gcgggcgcgaatgccacgatagccaacaac 723 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,484 Number of Sequences: 18737 Number of extensions: 14484 Number of successful extensions: 329 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 328 Number of HSP's gapped (non-prelim): 1 length of query: 596 length of database: 41,270,998 effective HSP length: 17 effective length of query: 579 effective length of database: 40,952,469 effective search space: 23711479551 effective search space used: 23711479551 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA263425|DMAA63425 LD07241.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD07241 5prime, mRNA sequence. (471 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,166 Number of Sequences: 18737 Number of extensions: 10166 Number of successful extensions: 244 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 244 Number of HSP's gapped (non-prelim): 0 length of query: 471 length of database: 41,270,998 effective HSP length: 17 effective length of query: 454 effective length of database: 40,952,469 effective search space: 18592420926 effective search space used: 18592420926 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA263927|DMAA63927 LD07107.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD07107 5prime, mRNA sequence. (572 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG6169-RA feature: mRNA loc=3L:complement(15769866..15770890,157... 513 e-145 >CG6169-RA feature: mRNA loc=3L:complement(15769866..15770890,15770950..15771687, 15771838..15772060,15772126..15772868, 15774350..15775298);ID=FBan0006169;gene_id=FBgn0036534;g ene_sym=CG6169;sym=CG6169;scaffold=AE003529;len=3678 Length = 3678 Score = 513 bits (259), Expect = e-145 Identities = 259/259 (100%) Strand = Plus / Plus Query: 1 aaggcgagttttgagcagttgaaaagcccgttaaatagtgcaaaatagtagctaatttta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 30 aaggcgagttttgagcagttgaaaagcccgttaaatagtgcaaaatagtagctaatttta 89 Query: 61 agtgcaacgtgtaaataaaggcaatttagatcgcgaaaaagttcggtgagcaaataataa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 90 agtgcaacgtgtaaataaaggcaatttagatcgcgaaaaagttcggtgagcaaataataa 149 Query: 121 tttgagattggaaagtggaaagtacgtgaactgggcgagaaaagaaaacggaaaaacgtg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 150 tttgagattggaaagtggaaagtacgtgaactgggcgagaaaagaaaacggaaaaacgtg 209 Query: 181 agactgtgtgcgtgcgaagaattttccgtctccctcgcaccaaagtggagcgcactcaat 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 210 agactgtgtgcgtgcgaagaattttccgtctccctcgcaccaaagtggagcgcactcaat 269 Query: 241 tattttgtggatggagtgg 259 ||||||||||||||||||| Sbjct: 270 tattttgtggatggagtgg 288 Score = 476 bits (240), Expect = e-133 Identities = 249/252 (98%) Strand = Plus / Plus Query: 321 aaacagcaatagcaacaacagaattaaatgcaaatgcaaaacatgttgagggaaagagag 380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 350 aaacagcaatagcaacaacagaattaaatgcaaatgcaaaacatgttgagggaaagagag 409 Query: 381 cgaaaatcgagagaacaatagcaaaaggatgtaatgcaaccgatggaataactagagtac 440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 410 cgaaaatcgagagaacaatagcaaaaggatgtaatgcaaccgatggaataactagagtac 469 Query: 441 aagtacaaaaattgcattggaaatttaaattcgtgcgacagaagcggacgattgcagaaa 500 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 470 aagtacaaaaattgcattggaaatttaaattcgtgcgacaaaagcggacgattgcagaaa 529 Query: 501 ttttcgaaacttggcagccctatttactaccaaagcaacgccgttgtaaaaatacgtgac 560 ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| Sbjct: 530 ttttcgaaacttggcagccatatttactacaaaagcaacgccgttgtaaaaatacgtgac 589 Query: 561 aaaacgcttaca 572 |||||||||||| Sbjct: 590 aaaacgcttaca 601 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,254 Number of Sequences: 18737 Number of extensions: 13254 Number of successful extensions: 491 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 489 Number of HSP's gapped (non-prelim): 2 length of query: 572 length of database: 41,270,998 effective HSP length: 17 effective length of query: 555 effective length of database: 40,952,469 effective search space: 22728620295 effective search space used: 22728620295 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA264033|DMAA64033 LD07441.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD07441 5, mRNA sequence. (597 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Lap1-RA feature: mRNA loc=2R:join(9999402..9999744,9999818..1000... 1183 0.0 >Lap1-RA feature: mRNA loc=2R:join(9999402..9999744,9999818..10000024, 10000081..10000216,10000273..10000562,10000776..10002569, 10002631..10004028);ID=FBan0010255;gene_id=FBgn0033984;ge ne_sym=Lap1;sym=CG10255;scaffold=AE003812;len=4168 Length = 4168 Score = 1183 bits (597), Expect = 0.0 Identities = 597/597 (100%) Strand = Plus / Minus Query: 1 ccaaacatattattgcttccttaagtgcataacttaactatttacataagatatcgatta 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3443 ccaaacatattattgcttccttaagtgcataacttaactatttacataagatatcgatta 3384 Query: 61 gatactgattaaataaatccaacttataagtggctcaattcgaattataaacagctttaa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3383 gatactgattaaataaatccaacttataagtggctcaattcgaattataaacagctttaa 3324 Query: 121 agtcaaatcataaattcaattcatcttcattcaacttaaattttgagaatacttgttgtg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3323 agtcaaatcataaattcaattcatcttcattcaacttaaattttgagaatacttgttgtg 3264 Query: 181 ggctataactactaaatttggccgtcttctggtaatattcttctatcgagtatggaggtg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3263 ggctataactactaaatttggccgtcttctggtaatattcttctatcgagtatggaggtg 3204 Query: 241 caaagaaaatggcagtttggattcgtctatctaatatacaaaaagcatgggatcctctag 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3203 caaagaaaatggcagtttggattcgtctatctaatatacaaaaagcatgggatcctctag 3144 Query: 301 ctggcgattgtgctctatgactgatggtttgaccgccagtacggaagggtattatgaact 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3143 ctggcgattgtgctctatgactgatggtttgaccgccagtacggaagggtattatgaact 3084 Query: 361 aacactatgatcggtccaagtaatttgttatccgatttcggcgatgctgcttattggaaa 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3083 aacactatgatcggtccaagtaatttgttatccgatttcggcgatgctgcttattggaaa 3024 Query: 421 aatgcgttagaaaaatgcacaaaaagtcttcggtctcgggatgggaatcggcttaggtcg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3023 aatgcgttagaaaaatgcacaaaaagtcttcggtctcgggatgggaatcggcttaggtcg 2964 Query: 481 gtaaatagatggtccatcattttctcgacaacattatgttcatgaccgtgccgcagttta 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2963 gtaaatagatggtccatcattttctcgacaacattatgttcatgaccgtgccgcagttta 2904 Query: 541 gcagcactcgtttggcatcgctcaggttggcattggtcaggtcgtagccgtcgattt 597 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2903 gcagcactcgtttggcatcgctcaggttggcattggtcaggtcgtagccgtcgattt 2847 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,471 Number of Sequences: 18737 Number of extensions: 11471 Number of successful extensions: 202 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 201 Number of HSP's gapped (non-prelim): 1 length of query: 597 length of database: 41,270,998 effective HSP length: 17 effective length of query: 580 effective length of database: 40,952,469 effective search space: 23752432020 effective search space used: 23752432020 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA264761|DMAA64761 LD08455.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD08455 5 similar to CG17450: FBan0017450 GO:[] located on: U;: 08/13/2002, mRNA sequence. (620 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32820-RA feature: mRNA loc=X:complement(21284100..21284637,212... 1229 0.0 CG32819-RA feature: mRNA loc=X:complement(21290192..21290729,212... 1229 0.0 CG17450-RB feature: mRNA loc=X:complement(21278018..21278555,212... 1098 0.0 CG17450-RA feature: mRNA loc=X:complement(21278018..21278555,212... 458 e-128 CG32820-RB feature: mRNA loc=X:complement(21284100..21284637,212... 458 e-128 CG32819-RB feature: mRNA loc=X:complement(21290192..21290729,212... 458 e-128 >CG32820-RA feature: mRNA loc=X:complement(21284100..21284637,21284798..21285385, 21285509..21285861, 21286534..21286922);ID=FBan0032820;gene_id=FBgn0052820;g ene_sym=CG32820;sym=CG32820;scaffold=AE003122;len=1868 Length = 1868 Score = 1229 bits (620), Expect = 0.0 Identities = 620/620 (100%) Strand = Plus / Plus Query: 1 cagacccaaagtaaagggatctccgaggaagagaagtggtaatatatcgagtccgtcgac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 cagacccaaagtaaagggatctccgaggaagagaagtggtaatatatcgagtccgtcgac 60 Query: 61 aaatgctctgctgggccaacgaggatcactatctgagccaacgctacccgaatccgcagc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 aaatgctctgctgggccaacgaggatcactatctgagccaacgctacccgaatccgcagc 120 Query: 121 aaaaggcgccagaaacgcttaagaacctgctgttgcgatccagtgtaccgatagtgggtg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aaaaggcgccagaaacgcttaagaacctgctgttgcgatccagtgtaccgatagtgggtg 180 Query: 181 ctccgaatcccgagaaggactcgcatttcgccggcaccatggcaccgctcaagggtcagg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 ctccgaatcccgagaaggactcgcatttcgccggcaccatggcaccgctcaagggtcagg 240 Query: 241 aggtgcttaagttccacaagcactcctacctcgagaaccgcatcttcgatcaccgcctgg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 aggtgcttaagttccacaagcactcctacctcgagaaccgcatcttcgatcaccgcctgg 300 Query: 301 tcaaggacaacctgctggacaagtggcccaccgctgacatgaacgagtacaacgagcgca 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 tcaaggacaacctgctggacaagtggcccaccgctgacatgaacgagtacaacgagcgca 360 Query: 361 aggaccaccgcaacctcatggagtcctatccatggagccaggcgggcgctccgccctgca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 aggaccaccgcaacctcatggagtcctatccatggagccaggcgggcgctccgccctgca 420 Query: 421 tggagcccgtcatggggccttcgatcccgccgagagttggcgccgcctacgagacgccca 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 tggagcccgtcatggggccttcgatcccgccgagagttggcgccgcctacgagacgccca 480 Query: 481 cgaagcacccgtggcgccctgctatggcctatgagctaatccaggtgaagcatatgcccg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 cgaagcacccgtggcgccctgctatggcctatgagctaatccaggtgaagcatatgcccg 540 Query: 541 agcagccggtgaccaaccagctgaccaagcagtgcttcctgcccaagggcatgaagacgg 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 agcagccggtgaccaaccagctgaccaagcagtgcttcctgcccaagggcatgaagacgg 600 Query: 601 acggcatgatattccccaac 620 |||||||||||||||||||| Sbjct: 601 acggcatgatattccccaac 620 >CG32819-RA feature: mRNA loc=X:complement(21290192..21290729,21290890..21291477, 21291601..21291953, 21292626..21293014);ID=FBan0032819;gene_id=FBgn0052819;g ene_sym=CG32819;sym=CG32819;scaffold=AE003122;len=1868 Length = 1868 Score = 1229 bits (620), Expect = 0.0 Identities = 620/620 (100%) Strand = Plus / Plus Query: 1 cagacccaaagtaaagggatctccgaggaagagaagtggtaatatatcgagtccgtcgac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 cagacccaaagtaaagggatctccgaggaagagaagtggtaatatatcgagtccgtcgac 60 Query: 61 aaatgctctgctgggccaacgaggatcactatctgagccaacgctacccgaatccgcagc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 aaatgctctgctgggccaacgaggatcactatctgagccaacgctacccgaatccgcagc 120 Query: 121 aaaaggcgccagaaacgcttaagaacctgctgttgcgatccagtgtaccgatagtgggtg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aaaaggcgccagaaacgcttaagaacctgctgttgcgatccagtgtaccgatagtgggtg 180 Query: 181 ctccgaatcccgagaaggactcgcatttcgccggcaccatggcaccgctcaagggtcagg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 ctccgaatcccgagaaggactcgcatttcgccggcaccatggcaccgctcaagggtcagg 240 Query: 241 aggtgcttaagttccacaagcactcctacctcgagaaccgcatcttcgatcaccgcctgg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 aggtgcttaagttccacaagcactcctacctcgagaaccgcatcttcgatcaccgcctgg 300 Query: 301 tcaaggacaacctgctggacaagtggcccaccgctgacatgaacgagtacaacgagcgca 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 tcaaggacaacctgctggacaagtggcccaccgctgacatgaacgagtacaacgagcgca 360 Query: 361 aggaccaccgcaacctcatggagtcctatccatggagccaggcgggcgctccgccctgca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 aggaccaccgcaacctcatggagtcctatccatggagccaggcgggcgctccgccctgca 420 Query: 421 tggagcccgtcatggggccttcgatcccgccgagagttggcgccgcctacgagacgccca 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 tggagcccgtcatggggccttcgatcccgccgagagttggcgccgcctacgagacgccca 480 Query: 481 cgaagcacccgtggcgccctgctatggcctatgagctaatccaggtgaagcatatgcccg 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 cgaagcacccgtggcgccctgctatggcctatgagctaatccaggtgaagcatatgcccg 540 Query: 541 agcagccggtgaccaaccagctgaccaagcagtgcttcctgcccaagggcatgaagacgg 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 agcagccggtgaccaaccagctgaccaagcagtgcttcctgcccaagggcatgaagacgg 600 Query: 601 acggcatgatattccccaac 620 |||||||||||||||||||| Sbjct: 601 acggcatgatattccccaac 620 >CG17450-RB feature: mRNA loc=X:complement(21278018..21278555,21278713..21279300, 21279424..21279776, 21280442..21280768);ID=FBan0017450;gene_id=FBgn0040028;g ene_sym=CG17450;sym=CG17450;scaffold=AE003122;len=1806 Length = 1806 Score = 1098 bits (554), Expect = 0.0 Identities = 557/558 (99%) Strand = Plus / Plus Query: 63 atgctctgctgggccaacgaggatcactatctgagccaacgctacccgaatccgcagcaa 122 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atgctctgctgggccaacgaggatcactatctgagccaacgctacccgaatccgcagcaa 60 Query: 123 aaggcgccagaaacgcttaagaacctgctgttgcgatccagtgtaccgatagtgggtgct 182 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 61 aaggcgccagaaacgcttaagaacctgctgttgcgatccagtgtaccgatagtgagtgct 120 Query: 183 ccgaatcccgagaaggactcgcatttcgccggcaccatggcaccgctcaagggtcaggag 242 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 ccgaatcccgagaaggactcgcatttcgccggcaccatggcaccgctcaagggtcaggag 180 Query: 243 gtgcttaagttccacaagcactcctacctcgagaaccgcatcttcgatcaccgcctggtc 302 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 gtgcttaagttccacaagcactcctacctcgagaaccgcatcttcgatcaccgcctggtc 240 Query: 303 aaggacaacctgctggacaagtggcccaccgctgacatgaacgagtacaacgagcgcaag 362 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 aaggacaacctgctggacaagtggcccaccgctgacatgaacgagtacaacgagcgcaag 300 Query: 363 gaccaccgcaacctcatggagtcctatccatggagccaggcgggcgctccgccctgcatg 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 gaccaccgcaacctcatggagtcctatccatggagccaggcgggcgctccgccctgcatg 360 Query: 423 gagcccgtcatggggccttcgatcccgccgagagttggcgccgcctacgagacgcccacg 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 gagcccgtcatggggccttcgatcccgccgagagttggcgccgcctacgagacgcccacg 420 Query: 483 aagcacccgtggcgccctgctatggcctatgagctaatccaggtgaagcatatgcccgag 542 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 aagcacccgtggcgccctgctatggcctatgagctaatccaggtgaagcatatgcccgag 480 Query: 543 cagccggtgaccaaccagctgaccaagcagtgcttcctgcccaagggcatgaagacggac 602 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 cagccggtgaccaaccagctgaccaagcagtgcttcctgcccaagggcatgaagacggac 540 Query: 603 ggcatgatattccccaac 620 |||||||||||||||||| Sbjct: 541 ggcatgatattccccaac 558 >CG17450-RA feature: mRNA loc=X:complement(21278018..21278555,21278713..21279300, 21279424..21280004);ID=FBan0017450;gene_id=FBgn0040028;g ene_sym=CG17450;sym=CG17450;scaffold=AE003122;len=1707 Length = 1707 Score = 458 bits (231), Expect = e-128 Identities = 231/231 (100%) Strand = Plus / Plus Query: 390 ccatggagccaggcgggcgctccgccctgcatggagcccgtcatggggccttcgatcccg 449 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 229 ccatggagccaggcgggcgctccgccctgcatggagcccgtcatggggccttcgatcccg 288 Query: 450 ccgagagttggcgccgcctacgagacgcccacgaagcacccgtggcgccctgctatggcc 509 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 289 ccgagagttggcgccgcctacgagacgcccacgaagcacccgtggcgccctgctatggcc 348 Query: 510 tatgagctaatccaggtgaagcatatgcccgagcagccggtgaccaaccagctgaccaag 569 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 349 tatgagctaatccaggtgaagcatatgcccgagcagccggtgaccaaccagctgaccaag 408 Query: 570 cagtgcttcctgcccaagggcatgaagacggacggcatgatattccccaac 620 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 409 cagtgcttcctgcccaagggcatgaagacggacggcatgatattccccaac 459 >CG32820-RB feature: mRNA loc=X:complement(21284100..21284637,21284798..21285385, 21285509..21285945);ID=FBan0032820;gene_id=FBgn0052820;g ene_sym=CG32820;sym=CG32820;scaffold=AE003122;len=1563 Length = 1563 Score = 458 bits (231), Expect = e-128 Identities = 231/231 (100%) Strand = Plus / Plus Query: 390 ccatggagccaggcgggcgctccgccctgcatggagcccgtcatggggccttcgatcccg 449 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 85 ccatggagccaggcgggcgctccgccctgcatggagcccgtcatggggccttcgatcccg 144 Query: 450 ccgagagttggcgccgcctacgagacgcccacgaagcacccgtggcgccctgctatggcc 509 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 145 ccgagagttggcgccgcctacgagacgcccacgaagcacccgtggcgccctgctatggcc 204 Query: 510 tatgagctaatccaggtgaagcatatgcccgagcagccggtgaccaaccagctgaccaag 569 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 205 tatgagctaatccaggtgaagcatatgcccgagcagccggtgaccaaccagctgaccaag 264 Query: 570 cagtgcttcctgcccaagggcatgaagacggacggcatgatattccccaac 620 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 265 cagtgcttcctgcccaagggcatgaagacggacggcatgatattccccaac 315 >CG32819-RB feature: mRNA loc=X:complement(21290192..21290729,21290890..21291477, 21291601..21292181);ID=FBan0032819;gene_id=FBgn0052819;g ene_sym=CG32819;sym=CG32819;scaffold=AE003122;len=1707 Length = 1707 Score = 458 bits (231), Expect = e-128 Identities = 231/231 (100%) Strand = Plus / Plus Query: 390 ccatggagccaggcgggcgctccgccctgcatggagcccgtcatggggccttcgatcccg 449 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 229 ccatggagccaggcgggcgctccgccctgcatggagcccgtcatggggccttcgatcccg 288 Query: 450 ccgagagttggcgccgcctacgagacgcccacgaagcacccgtggcgccctgctatggcc 509 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 289 ccgagagttggcgccgcctacgagacgcccacgaagcacccgtggcgccctgctatggcc 348 Query: 510 tatgagctaatccaggtgaagcatatgcccgagcagccggtgaccaaccagctgaccaag 569 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 349 tatgagctaatccaggtgaagcatatgcccgagcagccggtgaccaaccagctgaccaag 408 Query: 570 cagtgcttcctgcccaagggcatgaagacggacggcatgatattccccaac 620 ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 409 cagtgcttcctgcccaagggcatgaagacggacggcatgatattccccaac 459 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,256 Number of Sequences: 18737 Number of extensions: 15256 Number of successful extensions: 348 Number of sequences better than 1.0e-100: 6 Number of HSP's better than 0.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 342 Number of HSP's gapped (non-prelim): 6 length of query: 620 length of database: 41,270,998 effective HSP length: 17 effective length of query: 603 effective length of database: 40,952,469 effective search space: 24694338807 effective search space used: 24694338807 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA391545|DMAA91545 LD10566.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD10566 5prime, mRNA sequence. (489 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32594-RC feature: mRNA loc=X:join(14755448..14755968,14761600.... 850 0.0 CG32594-RB feature: mRNA loc=X:join(14755448..14755968,14761600.... 850 0.0 >CG32594-RC feature: mRNA loc=X:join(14755448..14755968,14761600..14761861, 14761925..14762082,14762192..14762481, 14762557..14763587,14764620..14765154, 14772630..14773074);ID=FBan0032594;gene_id=FBgn0052594;g ene_sym=CG32594;sym=CG32594;scaffold=AE003497;len=3242 Length = 3242 Score = 850 bits (429), Expect = 0.0 Identities = 470/489 (96%) Strand = Plus / Plus Query: 1 ccatccggtaaacacgtctcacaacgttatttgtgttgaatatatatatannnnnnngtt 60 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 21 ccatccggtaaacacgtctcacaacgttatttgtgttgaatatatatatatttttttgtt 80 Query: 61 gtggctcnnnnnnnnnaatttctgcggcccctaaagttcgacgatcgtgagaagggaaaa 120 ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 81 gtggctctttttttttaatttctgcggcccctaaagttcgacgatcgtgagaagggaaaa 140 Query: 121 agagtgtgaagtgacctaagcggttttgaaatatctatcttggcaaaacgagaacaaatt 180 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 141 agagtgtgaagtgacctaagcggttttgaaatatctatcttggcaaaacgaaaacaaatt 200 Query: 181 tgttaaagcacatataaacaaaaacaaaataacaacaataaaagtgaagcaaaggtgaag 240 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 201 tgttaaagcacatataaacaaaaacaaaataacaaaaataaaagtgaagcaaaggtgaag 260 Query: 241 aagaccagaatgaattcgcgacggattgctctggtcctcctaatcggcataatcgtttcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 261 aagaccagaatgaattcgcgacggattgctctggtcctcctaatcggcataatcgtttcg 320 Query: 301 ttttctggccatgatgcactaacctatccggagcgcttcgatcgcctgcccacttggggt 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 321 ttttctggccatgatgcactaacctatccggagcgcttcgatcgcctgcccacttggggt 380 Query: 361 ggtcattcccaaattggtgggccgctgctggataccgcccaccgggagaatcgtgagaaa 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 381 ggtcattcccaaattggtgggccgctgctggataccgcccaccgggagaatcgtgagaaa 440 Query: 421 agggagaatagggtggacctgtgccggcactgtttctgcattcatctccaggcaatctgt 480 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 441 agggagaatagggtggacctgtgccggcactgtttctgcattcatctcaaggcaatctgt 500 Query: 481 gattacaag 489 ||||||||| Sbjct: 501 gattacaag 509 >CG32594-RB feature: mRNA loc=X:join(14755448..14755968,14761600..14761861, 14761925..14762082,14762192..14762481, 14762557..14764361,14764620..14765154, 14772630..14773074);ID=FBan0032594;gene_id=FBgn0052594;g ene_sym=CG32594;sym=CG32594;scaffold=AE003497;len=4016 Length = 4016 Score = 850 bits (429), Expect = 0.0 Identities = 470/489 (96%) Strand = Plus / Plus Query: 1 ccatccggtaaacacgtctcacaacgttatttgtgttgaatatatatatannnnnnngtt 60 |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 21 ccatccggtaaacacgtctcacaacgttatttgtgttgaatatatatatatttttttgtt 80 Query: 61 gtggctcnnnnnnnnnaatttctgcggcccctaaagttcgacgatcgtgagaagggaaaa 120 ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 81 gtggctctttttttttaatttctgcggcccctaaagttcgacgatcgtgagaagggaaaa 140 Query: 121 agagtgtgaagtgacctaagcggttttgaaatatctatcttggcaaaacgagaacaaatt 180 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 141 agagtgtgaagtgacctaagcggttttgaaatatctatcttggcaaaacgaaaacaaatt 200 Query: 181 tgttaaagcacatataaacaaaaacaaaataacaacaataaaagtgaagcaaaggtgaag 240 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 201 tgttaaagcacatataaacaaaaacaaaataacaaaaataaaagtgaagcaaaggtgaag 260 Query: 241 aagaccagaatgaattcgcgacggattgctctggtcctcctaatcggcataatcgtttcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 261 aagaccagaatgaattcgcgacggattgctctggtcctcctaatcggcataatcgtttcg 320 Query: 301 ttttctggccatgatgcactaacctatccggagcgcttcgatcgcctgcccacttggggt 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 321 ttttctggccatgatgcactaacctatccggagcgcttcgatcgcctgcccacttggggt 380 Query: 361 ggtcattcccaaattggtgggccgctgctggataccgcccaccgggagaatcgtgagaaa 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 381 ggtcattcccaaattggtgggccgctgctggataccgcccaccgggagaatcgtgagaaa 440 Query: 421 agggagaatagggtggacctgtgccggcactgtttctgcattcatctccaggcaatctgt 480 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 441 agggagaatagggtggacctgtgccggcactgtttctgcattcatctcaaggcaatctgt 500 Query: 481 gattacaag 489 ||||||||| Sbjct: 501 gattacaag 509 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 21,216 Number of Sequences: 18737 Number of extensions: 21216 Number of successful extensions: 482 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 478 Number of HSP's gapped (non-prelim): 4 length of query: 489 length of database: 41,270,998 effective HSP length: 17 effective length of query: 472 effective length of database: 40,952,469 effective search space: 19329565368 effective search space used: 19329565368 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA391571|DMAA91571 LD10585.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD10585 5prime, mRNA sequence. (596 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,740 Number of Sequences: 18737 Number of extensions: 13740 Number of successful extensions: 405 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 405 Number of HSP's gapped (non-prelim): 0 length of query: 596 length of database: 41,270,998 effective HSP length: 17 effective length of query: 579 effective length of database: 40,952,469 effective search space: 23711479551 effective search space used: 23711479551 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA392262|DMAA92262 LD11278.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD11278 5prime, mRNA sequence. (572 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,817 Number of Sequences: 18737 Number of extensions: 12817 Number of successful extensions: 359 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 359 Number of HSP's gapped (non-prelim): 0 length of query: 572 length of database: 41,270,998 effective HSP length: 17 effective length of query: 555 effective length of database: 40,952,469 effective search space: 22728620295 effective search space used: 22728620295 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA392735|DMAA92735 LD11861.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD11861 5, mRNA sequence. (634 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,795 Number of Sequences: 18737 Number of extensions: 11795 Number of successful extensions: 267 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 267 Number of HSP's gapped (non-prelim): 0 length of query: 634 length of database: 41,270,998 effective HSP length: 17 effective length of query: 617 effective length of database: 40,952,469 effective search space: 25267673373 effective search space used: 25267673373 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA438826|DMAA38826 LD13184.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD13184 5 similar to CG6661: FBan0006661 GO:[1-pyrroline-5-carboxylate dehydrogenase (GO:0003842)] located on: 3L 70C11-70C11;: 08/13/2002, mRNA sequence. (650 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG6661-RA feature: mRNA loc=3L:13983656..13985630;ID=FBan0006661... 1251 0.0 >CG6661-RA feature: mRNA loc=3L:13983656..13985630;ID=FBan0006661;gene_id=FBgn0036 403;gene_sym=CG6661;sym=CG6661;scaffold=AE003536;len=1975 Length = 1975 Score = 1251 bits (631), Expect = 0.0 Identities = 647/650 (99%), Gaps = 2/650 (0%) Strand = Plus / Minus Query: 1 taaaaacgccactgcaaatacatttattgtaattttgaaacacccgccacccatcagcaa 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1957 taaaaacgccactgcaaatacatttattgtaattttgaaacacccgccacccatcagcaa 1898 Query: 61 gctcagggaaacgtatttgatccacgcatgggaggtggaccatcaacagtctcctcgatg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1897 gctcagggaaacgtatttgatccacgcatgggaggtggaccatcaacagtctcctcgatg 1838 Query: 121 agcagcggcgagctccagcgcattaggaagtaggcagatccggatttatcgtttgtcccg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1837 agcagcggcgagctccagcgcattaggaagtaggcagatccggatttatcgtttgtcccg 1778 Query: 181 gacaaccgatttccaccaaagggagtcagcccgtacgtgctacccgtgcatcgctcattc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1777 gacaaccgatttccaccaaagggagtcagcccgtacgtgctacccgtgcatcgctcattc 1718 Query: 241 acgtagagattactagcggacattcgcagttggttcaggcagtgaaggataacctcatcc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1717 acgtagagattactagcggacattcgcagttggttcaggcagtgaaggataacctcatcc 1658 Query: 301 tgacttgcgaatatggagccggagagcgcgtatctggactgattggcggcaagcttgaga 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1657 tgacttgcgaatatggagccggagagcgcgtatctggactgattggcggcaagcttgaga 1598 Query: 361 gcctcactgaaggaatcgtccgaatagacgaacaccggcaagaacggtccgcagcagggc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1597 gcctcactgaaggaatcgtccgaatagacgaacaccggcaagaacggtccgcagcagggc 1538 Query: 421 tcacacagcagtggatccaatggatccgacacccggacaatcgttggatcaacgaatcta 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1537 tcacacagcagtggatccaatggatccgacacccggacaatcgttggatcaacgaatcta 1478 Query: 481 ccagtgctgtcatcacagctgcctccgcacaactgctccatgttcttggtgcgctgcagt 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1477 ccagtgctgtcatcacagctgcctccgcacaactgctccatgttcttggtgcgctgcagt 1418 Query: 541 agtttctgcatccgcc-gaagtcatttatatgcaccatcgctcctatatccgtttccgat 599 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1417 agtttctgcatccgccggaagtcatttatatgcaccatcgctcctatatccgtttccgat 1358 Query: 600 tcgatgggggtctccgatggtcagttgctccgtggcctccancaactcct 649 ||||| ||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1357 tcgat-ggggtctccgatggtcagttgctccgtggcctccaccaactcct 1309 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,267 Number of Sequences: 18737 Number of extensions: 14267 Number of successful extensions: 378 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 375 Number of HSP's gapped (non-prelim): 1 length of query: 650 length of database: 41,270,998 effective HSP length: 17 effective length of query: 633 effective length of database: 40,952,469 effective search space: 25922912877 effective search space used: 25922912877 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA440080|DMAA40080 LD15161.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD15161 5prime similar to M20571: D.melanogaster enhancer of split mRNA, complete cds, mRNA sequence. (559 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value gro-RD feature: mRNA loc=3R:join(21857217..21857271,21858082..21... 989 0.0 gro-RC feature: mRNA loc=3R:join(21857907..21857990,21858082..21... 989 0.0 gro-RB feature: mRNA loc=3R:join(21856797..21856988,21858082..21... 989 0.0 gro-RA feature: mRNA loc=3R:join(21857217..21857351,21858082..21... 989 0.0 gro-RE feature: mRNA loc=3R:join(21856797..21856988,21858082..21... 632 0.0 >gro-RD feature: mRNA loc=3R:join(21857217..21857271,21858082..21858466, 21858602..21858696,21859397..21859460,21859531..21859713, 21860556..21860750,21860816..21860914,21861623..21861679, 21861820..21861996,21862061..21862332,21862583..21863256, 21863323..21863522, 21863585..21864999);ID=FBan0008384;gene_id=FBgn0001139;ge ne_sym=gro;sym=CG8384;scaffold=AE003754;len=3871 Length = 3871 Score = 989 bits (499), Expect = 0.0 Identities = 542/551 (98%), Gaps = 4/551 (0%) Strand = Plus / Plus Query: 6 cattatgttatgtactacgagatgtcctatggccttaacgtggagatgcacaagcagacc 65 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 588 cattatgttatgtactacgagatgtcctatggccttaacgtggagatgcacaagcagacc 647 Query: 66 gagatcgccaagcggctgaacacactgatcaaccagctacttccattccttcaggccgac 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 648 gagatcgccaagcggctgaacacactgatcaaccagctacttccattccttcaggccgac 707 Query: 126 caccagcagcaagtgctgcaggcggtggagcgggcgaa-caggctgaccatgcaggagct 184 |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct: 708 caccagcagcaagtgctgcaggcggtggagcgggcgaagcagg-tgaccatgcaggagct 766 Query: 185 caacctgatcattgggcaacagatccacgcccagcaggtgccaggtggaccacctcagcc 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 767 caacctgatcattgggcaacagatccacgcccagcaggtgccaggtggaccacctcagcc 826 Query: 245 gatgggcgcactgaatccgtttggcgccctggcagcc-cattgggcctgccacacggacc 303 |||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||| Sbjct: 827 gatgggcgcactgaatccgtttggcgccctgggcgccaccatgggcctgccacacggacc 886 Query: 304 gcaa-gtctgctgaacaaaccgcccgaacaccacaggccggacatcaagccgacgggtct 362 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 887 gcaaggtctgctgaacaaaccgcccgaacaccacaggccggacatcaagccgacgggtct 946 Query: 363 agaggggccagcagccgccgaggagcgattgcgcaattcggtttcgccggccgatcgtga 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 947 agaggggccagcagccgccgaggagcgattgcgcaattcggtttcgccggccgatcgtga 1006 Query: 423 gaagtatcgcacacgctcgccgctggacatcgagaacgactcgaagcgtcgaaaagatga 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1007 gaagtatcgcacacgctcgccgctggacatcgagaacgactcgaagcgtcgaaaagatga 1066 Query: 483 gaaactgcaagaggatgaaggcgagaagagcgatcaagatttagtcgtagatgttgcaaa 542 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1067 gaaactgcaagaggatgaaggcgagaaaagcgatcaagatttagtcgtagatgttgcaaa 1126 Query: 543 tgaaatggaat 553 ||||||||||| Sbjct: 1127 tgaaatggaat 1137 >gro-RC feature: mRNA loc=3R:join(21857907..21857990,21858082..21858466, 21858602..21858696,21859397..21859460,21859531..21859713, 21860556..21860750,21860816..21860914,21861623..21861679, 21861820..21861996,21862061..21862332,21862583..21863256, 21863323..21863522, 21863585..21864999);ID=FBan0008384;gene_id=FBgn0001139;ge ne_sym=gro;sym=CG8384;scaffold=AE003754;len=3900 Length = 3900 Score = 989 bits (499), Expect = 0.0 Identities = 542/551 (98%), Gaps = 4/551 (0%) Strand = Plus / Plus Query: 6 cattatgttatgtactacgagatgtcctatggccttaacgtggagatgcacaagcagacc 65 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 617 cattatgttatgtactacgagatgtcctatggccttaacgtggagatgcacaagcagacc 676 Query: 66 gagatcgccaagcggctgaacacactgatcaaccagctacttccattccttcaggccgac 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 677 gagatcgccaagcggctgaacacactgatcaaccagctacttccattccttcaggccgac 736 Query: 126 caccagcagcaagtgctgcaggcggtggagcgggcgaa-caggctgaccatgcaggagct 184 |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct: 737 caccagcagcaagtgctgcaggcggtggagcgggcgaagcagg-tgaccatgcaggagct 795 Query: 185 caacctgatcattgggcaacagatccacgcccagcaggtgccaggtggaccacctcagcc 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 796 caacctgatcattgggcaacagatccacgcccagcaggtgccaggtggaccacctcagcc 855 Query: 245 gatgggcgcactgaatccgtttggcgccctggcagcc-cattgggcctgccacacggacc 303 |||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||| Sbjct: 856 gatgggcgcactgaatccgtttggcgccctgggcgccaccatgggcctgccacacggacc 915 Query: 304 gcaa-gtctgctgaacaaaccgcccgaacaccacaggccggacatcaagccgacgggtct 362 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 916 gcaaggtctgctgaacaaaccgcccgaacaccacaggccggacatcaagccgacgggtct 975 Query: 363 agaggggccagcagccgccgaggagcgattgcgcaattcggtttcgccggccgatcgtga 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 976 agaggggccagcagccgccgaggagcgattgcgcaattcggtttcgccggccgatcgtga 1035 Query: 423 gaagtatcgcacacgctcgccgctggacatcgagaacgactcgaagcgtcgaaaagatga 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1036 gaagtatcgcacacgctcgccgctggacatcgagaacgactcgaagcgtcgaaaagatga 1095 Query: 483 gaaactgcaagaggatgaaggcgagaagagcgatcaagatttagtcgtagatgttgcaaa 542 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1096 gaaactgcaagaggatgaaggcgagaaaagcgatcaagatttagtcgtagatgttgcaaa 1155 Query: 543 tgaaatggaat 553 ||||||||||| Sbjct: 1156 tgaaatggaat 1166 >gro-RB feature: mRNA loc=3R:join(21856797..21856988,21858082..21858466, 21858602..21858696,21859397..21859460,21859531..21859713, 21860556..21860750,21860816..21860914,21861623..21861679, 21861820..21861996,21862061..21862332,21862583..21863256, 21863323..21863522, 21863585..21864999);ID=FBan0008384;gene_id=FBgn0001139;ge ne_sym=gro;sym=CG8384;scaffold=AE003754;len=4008 Length = 4008 Score = 989 bits (499), Expect = 0.0 Identities = 542/551 (98%), Gaps = 4/551 (0%) Strand = Plus / Plus Query: 6 cattatgttatgtactacgagatgtcctatggccttaacgtggagatgcacaagcagacc 65 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 725 cattatgttatgtactacgagatgtcctatggccttaacgtggagatgcacaagcagacc 784 Query: 66 gagatcgccaagcggctgaacacactgatcaaccagctacttccattccttcaggccgac 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 785 gagatcgccaagcggctgaacacactgatcaaccagctacttccattccttcaggccgac 844 Query: 126 caccagcagcaagtgctgcaggcggtggagcgggcgaa-caggctgaccatgcaggagct 184 |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct: 845 caccagcagcaagtgctgcaggcggtggagcgggcgaagcagg-tgaccatgcaggagct 903 Query: 185 caacctgatcattgggcaacagatccacgcccagcaggtgccaggtggaccacctcagcc 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 904 caacctgatcattgggcaacagatccacgcccagcaggtgccaggtggaccacctcagcc 963 Query: 245 gatgggcgcactgaatccgtttggcgccctggcagcc-cattgggcctgccacacggacc 303 |||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||| Sbjct: 964 gatgggcgcactgaatccgtttggcgccctgggcgccaccatgggcctgccacacggacc 1023 Query: 304 gcaa-gtctgctgaacaaaccgcccgaacaccacaggccggacatcaagccgacgggtct 362 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1024 gcaaggtctgctgaacaaaccgcccgaacaccacaggccggacatcaagccgacgggtct 1083 Query: 363 agaggggccagcagccgccgaggagcgattgcgcaattcggtttcgccggccgatcgtga 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1084 agaggggccagcagccgccgaggagcgattgcgcaattcggtttcgccggccgatcgtga 1143 Query: 423 gaagtatcgcacacgctcgccgctggacatcgagaacgactcgaagcgtcgaaaagatga 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1144 gaagtatcgcacacgctcgccgctggacatcgagaacgactcgaagcgtcgaaaagatga 1203 Query: 483 gaaactgcaagaggatgaaggcgagaagagcgatcaagatttagtcgtagatgttgcaaa 542 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1204 gaaactgcaagaggatgaaggcgagaaaagcgatcaagatttagtcgtagatgttgcaaa 1263 Query: 543 tgaaatggaat 553 ||||||||||| Sbjct: 1264 tgaaatggaat 1274 >gro-RA feature: mRNA loc=3R:join(21857217..21857351,21858082..21858466, 21858602..21858696,21859397..21859460,21859531..21859713, 21860556..21860750,21860816..21860914,21861623..21861679, 21861820..21861996,21862061..21862332,21862583..21863256, 21863323..21863522, 21863585..21864999);ID=FBan0008384;gene_id=FBgn0001139;ge ne_sym=gro;sym=CG8384;scaffold=AE003754;len=3951 Length = 3951 Score = 989 bits (499), Expect = 0.0 Identities = 542/551 (98%), Gaps = 4/551 (0%) Strand = Plus / Plus Query: 6 cattatgttatgtactacgagatgtcctatggccttaacgtggagatgcacaagcagacc 65 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 668 cattatgttatgtactacgagatgtcctatggccttaacgtggagatgcacaagcagacc 727 Query: 66 gagatcgccaagcggctgaacacactgatcaaccagctacttccattccttcaggccgac 125 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 728 gagatcgccaagcggctgaacacactgatcaaccagctacttccattccttcaggccgac 787 Query: 126 caccagcagcaagtgctgcaggcggtggagcgggcgaa-caggctgaccatgcaggagct 184 |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct: 788 caccagcagcaagtgctgcaggcggtggagcgggcgaagcagg-tgaccatgcaggagct 846 Query: 185 caacctgatcattgggcaacagatccacgcccagcaggtgccaggtggaccacctcagcc 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 847 caacctgatcattgggcaacagatccacgcccagcaggtgccaggtggaccacctcagcc 906 Query: 245 gatgggcgcactgaatccgtttggcgccctggcagcc-cattgggcctgccacacggacc 303 |||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||| Sbjct: 907 gatgggcgcactgaatccgtttggcgccctgggcgccaccatgggcctgccacacggacc 966 Query: 304 gcaa-gtctgctgaacaaaccgcccgaacaccacaggccggacatcaagccgacgggtct 362 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 967 gcaaggtctgctgaacaaaccgcccgaacaccacaggccggacatcaagccgacgggtct 1026 Query: 363 agaggggccagcagccgccgaggagcgattgcgcaattcggtttcgccggccgatcgtga 422 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1027 agaggggccagcagccgccgaggagcgattgcgcaattcggtttcgccggccgatcgtga 1086 Query: 423 gaagtatcgcacacgctcgccgctggacatcgagaacgactcgaagcgtcgaaaagatga 482 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1087 gaagtatcgcacacgctcgccgctggacatcgagaacgactcgaagcgtcgaaaagatga 1146 Query: 483 gaaactgcaagaggatgaaggcgagaagagcgatcaagatttagtcgtagatgttgcaaa 542 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1147 gaaactgcaagaggatgaaggcgagaaaagcgatcaagatttagtcgtagatgttgcaaa 1206 Query: 543 tgaaatggaat 553 ||||||||||| Sbjct: 1207 tgaaatggaat 1217 >gro-RE feature: mRNA loc=3R:join(21856797..21856988,21858082..21858466, 21858602..21858696,21859397..21859460,21859531..21859713, 21860091..21860123,21860556..21860750,21860816..21860914, 21861623..21861679,21861820..21861996,21862061..21862332, 21862583..21863256,21863323..21863522, 21863585..21864999);ID=FBan0008384;gene_id=FBgn0001139;ge ne_sym=gro;sym=CG8384;scaffold=AE003754;len=4041 Length = 4041 Score = 632 bits (319), Expect = 0.0 Identities = 348/355 (98%), Gaps = 2/355 (0%) Strand = Plus / Plus Query: 201 caacagatccacgcccagcaggtgccaggtggaccacctcagccgatgggcgcactgaat 260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 953 caacagatccacgcccagcaggtgccaggtggaccacctcagccgatgggcgcactgaat 1012 Query: 261 ccgtttggcgccctggcagcc-cattgggcctgccacacggaccgcaag-tctgctgaac 318 |||||||||||||||| ||| | |||||||||||||||||||||||| |||||||||| Sbjct: 1013 ccgtttggcgccctgggcgccaccatgggcctgccacacggaccgcaaggtctgctgaac 1072 Query: 319 aaaccgcccgaacaccacaggccggacatcaagccgacgggtctagaggggccagcagcc 378 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1073 aaaccgcccgaacaccacaggccggacatcaagccgacgggtctagaggggccagcagcc 1132 Query: 379 gccgaggagcgattgcgcaattcggtttcgccggccgatcgtgagaagtatcgcacacgc 438 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1133 gccgaggagcgattgcgcaattcggtttcgccggccgatcgtgagaagtatcgcacacgc 1192 Query: 439 tcgccgctggacatcgagaacgactcgaagcgtcgaaaagatgagaaactgcaagaggat 498 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1193 tcgccgctggacatcgagaacgactcgaagcgtcgaaaagatgagaaactgcaagaggat 1252 Query: 499 gaaggcgagaagagcgatcaagatttagtcgtagatgttgcaaatgaaatggaat 553 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1253 gaaggcgagaaaagcgatcaagatttagtcgtagatgttgcaaatgaaatggaat 1307 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,838 Number of Sequences: 18737 Number of extensions: 16838 Number of successful extensions: 483 Number of sequences better than 1.0e-100: 5 Number of HSP's better than 0.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 467 Number of HSP's gapped (non-prelim): 6 length of query: 559 length of database: 41,270,998 effective HSP length: 17 effective length of query: 542 effective length of database: 40,952,469 effective search space: 22196238198 effective search space used: 22196238198 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA440503|DMAA40503 LD13774.3prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD13774 3prime, mRNA sequence. (319 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value mei-S332-RA feature: mRNA loc=2R:join(17165652..17165751,1716645... 436 e-122 >mei-S332-RA feature: mRNA loc=2R:join(17165652..17165751,17166454..17167025, 17167087..17168119);ID=FBan0005303;gene_id=FBgn0002715;ge ne_sym=mei-S332;sym=CG5303;scaffold=AE003456;len=1705 Length = 1705 Score = 436 bits (220), Expect = e-122 Identities = 240/247 (97%) Strand = Plus / Minus Query: 73 ttgggtggtgatgatgatggagtgtcctccttccgataacgccggaagaactgaatatgc 132 ||||||| |||||||||||||||||| ||||||||||| ||| ||| ||||||||||||| Sbjct: 1631 ttgggtgatgatgatgatggagtgtcttccttccgatagcgctggatgaactgaatatgc 1572 Query: 133 cctctattggaggcaaaaagtaatccgatgtcagcttntagtctataaattaaacttatc 192 ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1571 cctctattgcaggcaaaaagtaatccgatgtcagcttttagtctataaattaaacttatc 1512 Query: 193 agggcctgacgatttaaaaatattattcatattaaaaatggtaaaaagtggtattgaaaa 252 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1511 agggcctgacgatttaaaaatattattcatattaaaaatggtaaaaagtggtattgaaaa 1452 Query: 253 ccaatgaaattacagaaacaacattaaagcctattaaaaaattcgtctatctactttttg 312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1451 ccaatgaaattacagaaacaacattaaagcctattaaaaaattcgtctatctactttttg 1392 Query: 313 gccttgg 319 ||||||| Sbjct: 1391 gccttgg 1385 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7570 Number of Sequences: 18737 Number of extensions: 7570 Number of successful extensions: 655 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 653 Number of HSP's gapped (non-prelim): 1 length of query: 319 length of database: 41,270,998 effective HSP length: 16 effective length of query: 303 effective length of database: 40,971,206 effective search space: 12414275418 effective search space used: 12414275418 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA440644|DM1239842 LD15491.3prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD15491 3prime, mRNA sequence. (476 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Eno-RE feature: mRNA loc=2L:complement(1726636..1728320,1729311.... 549 e-156 Eno-RD feature: mRNA loc=2L:complement(1726636..1728320,1729311.... 549 e-156 Eno-RC feature: mRNA loc=2L:complement(1726636..1728320,1729311.... 549 e-156 Eno-RB feature: mRNA loc=2L:complement(1726636..1728320,1729311.... 549 e-156 Eno-RA feature: mRNA loc=2L:complement(1726636..1728320,1729311.... 549 e-156 >Eno-RE feature: mRNA loc=2L:complement(1726636..1728320,1729311..1729545, 1729719..1729897, 1730940..1731243);ID=FBan0017654;gene_id=FBgn0000579;gene _sym=Eno;sym=CG17654;scaffold=AE003585;len=2403 Length = 2403 Score = 549 bits (277), Expect = e-156 Identities = 277/277 (100%) Strand = Plus / Minus Query: 200 tttggtgtttgtgtagatcaatttataatttcataacgattacagcgattacattgaaga 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2403 tttggtgtttgtgtagatcaatttataatttcataacgattacagcgattacattgaaga 2344 Query: 260 tattcaaagctctcggcaactgaacgaatatcttgcacatagtgttttttattcttttgt 319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2343 tattcaaagctctcggcaactgaacgaatatcttgcacatagtgttttttattcttttgt 2284 Query: 320 ttataaataatgattagatcaaggtttagcattaattaataatgtctaagaacgaagcat 379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2283 ttataaataatgattagatcaaggtttagcattaattaataatgtctaagaacgaagcat 2224 Query: 380 agagacagcaaatgggtttggtagtttaattctgatgtatttgtgcgccagacacaagtt 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2223 agagacagcaaatgggtttggtagtttaattctgatgtatttgtgcgccagacacaagtt 2164 Query: 440 ccgaacgtaaaaggttgacgaacacgtgcaccgccgc 476 ||||||||||||||||||||||||||||||||||||| Sbjct: 2163 ccgaacgtaaaaggttgacgaacacgtgcaccgccgc 2127 >Eno-RD feature: mRNA loc=2L:complement(1726636..1728320,1729311..1729545, 1729719..1729897, 1730027..1730080);ID=FBan0017654;gene_id=FBgn0000579;gene _sym=Eno;sym=CG17654;scaffold=AE003585;len=2153 Length = 2153 Score = 549 bits (277), Expect = e-156 Identities = 277/277 (100%) Strand = Plus / Minus Query: 200 tttggtgtttgtgtagatcaatttataatttcataacgattacagcgattacattgaaga 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2153 tttggtgtttgtgtagatcaatttataatttcataacgattacagcgattacattgaaga 2094 Query: 260 tattcaaagctctcggcaactgaacgaatatcttgcacatagtgttttttattcttttgt 319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2093 tattcaaagctctcggcaactgaacgaatatcttgcacatagtgttttttattcttttgt 2034 Query: 320 ttataaataatgattagatcaaggtttagcattaattaataatgtctaagaacgaagcat 379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2033 ttataaataatgattagatcaaggtttagcattaattaataatgtctaagaacgaagcat 1974 Query: 380 agagacagcaaatgggtttggtagtttaattctgatgtatttgtgcgccagacacaagtt 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1973 agagacagcaaatgggtttggtagtttaattctgatgtatttgtgcgccagacacaagtt 1914 Query: 440 ccgaacgtaaaaggttgacgaacacgtgcaccgccgc 476 ||||||||||||||||||||||||||||||||||||| Sbjct: 1913 ccgaacgtaaaaggttgacgaacacgtgcaccgccgc 1877 >Eno-RC feature: mRNA loc=2L:complement(1726636..1728320,1729311..1729545, 1729719..1729897, 1729968..1730124);ID=FBan0017654;gene_id=FBgn0000579;gene _sym=Eno;sym=CG17654;scaffold=AE003585;len=2256 Length = 2256 Score = 549 bits (277), Expect = e-156 Identities = 277/277 (100%) Strand = Plus / Minus Query: 200 tttggtgtttgtgtagatcaatttataatttcataacgattacagcgattacattgaaga 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2256 tttggtgtttgtgtagatcaatttataatttcataacgattacagcgattacattgaaga 2197 Query: 260 tattcaaagctctcggcaactgaacgaatatcttgcacatagtgttttttattcttttgt 319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2196 tattcaaagctctcggcaactgaacgaatatcttgcacatagtgttttttattcttttgt 2137 Query: 320 ttataaataatgattagatcaaggtttagcattaattaataatgtctaagaacgaagcat 379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2136 ttataaataatgattagatcaaggtttagcattaattaataatgtctaagaacgaagcat 2077 Query: 380 agagacagcaaatgggtttggtagtttaattctgatgtatttgtgcgccagacacaagtt 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2076 agagacagcaaatgggtttggtagtttaattctgatgtatttgtgcgccagacacaagtt 2017 Query: 440 ccgaacgtaaaaggttgacgaacacgtgcaccgccgc 476 ||||||||||||||||||||||||||||||||||||| Sbjct: 2016 ccgaacgtaaaaggttgacgaacacgtgcaccgccgc 1980 >Eno-RB feature: mRNA loc=2L:complement(1726636..1728320,1729311..1729545, 1729719..1729897, 1731215..1731294);ID=FBan0017654;gene_id=FBgn0000579;gene _sym=Eno;sym=CG17654;scaffold=AE003585;len=2179 Length = 2179 Score = 549 bits (277), Expect = e-156 Identities = 277/277 (100%) Strand = Plus / Minus Query: 200 tttggtgtttgtgtagatcaatttataatttcataacgattacagcgattacattgaaga 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2179 tttggtgtttgtgtagatcaatttataatttcataacgattacagcgattacattgaaga 2120 Query: 260 tattcaaagctctcggcaactgaacgaatatcttgcacatagtgttttttattcttttgt 319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2119 tattcaaagctctcggcaactgaacgaatatcttgcacatagtgttttttattcttttgt 2060 Query: 320 ttataaataatgattagatcaaggtttagcattaattaataatgtctaagaacgaagcat 379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2059 ttataaataatgattagatcaaggtttagcattaattaataatgtctaagaacgaagcat 2000 Query: 380 agagacagcaaatgggtttggtagtttaattctgatgtatttgtgcgccagacacaagtt 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1999 agagacagcaaatgggtttggtagtttaattctgatgtatttgtgcgccagacacaagtt 1940 Query: 440 ccgaacgtaaaaggttgacgaacacgtgcaccgccgc 476 ||||||||||||||||||||||||||||||||||||| Sbjct: 1939 ccgaacgtaaaaggttgacgaacacgtgcaccgccgc 1903 >Eno-RA feature: mRNA loc=2L:complement(1726636..1728320, 1729311..1729378);ID=FBan0017654;gene_id=FBgn0000579;gene _sym=Eno;sym=CG17654;scaffold=AE003585;len=1753 Length = 1753 Score = 549 bits (277), Expect = e-156 Identities = 277/277 (100%) Strand = Plus / Minus Query: 200 tttggtgtttgtgtagatcaatttataatttcataacgattacagcgattacattgaaga 259 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1753 tttggtgtttgtgtagatcaatttataatttcataacgattacagcgattacattgaaga 1694 Query: 260 tattcaaagctctcggcaactgaacgaatatcttgcacatagtgttttttattcttttgt 319 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1693 tattcaaagctctcggcaactgaacgaatatcttgcacatagtgttttttattcttttgt 1634 Query: 320 ttataaataatgattagatcaaggtttagcattaattaataatgtctaagaacgaagcat 379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1633 ttataaataatgattagatcaaggtttagcattaattaataatgtctaagaacgaagcat 1574 Query: 380 agagacagcaaatgggtttggtagtttaattctgatgtatttgtgcgccagacacaagtt 439 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1573 agagacagcaaatgggtttggtagtttaattctgatgtatttgtgcgccagacacaagtt 1514 Query: 440 ccgaacgtaaaaggttgacgaacacgtgcaccgccgc 476 ||||||||||||||||||||||||||||||||||||| Sbjct: 1513 ccgaacgtaaaaggttgacgaacacgtgcaccgccgc 1477 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9731 Number of Sequences: 18737 Number of extensions: 9731 Number of successful extensions: 195 Number of sequences better than 1.0e-100: 5 Number of HSP's better than 0.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 190 Number of HSP's gapped (non-prelim): 5 length of query: 476 length of database: 41,270,998 effective HSP length: 17 effective length of query: 459 effective length of database: 40,952,469 effective search space: 18797183271 effective search space used: 18797183271 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA441644|DM1240842 LD16643.3prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD16643 3prime, mRNA sequence. (619 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,790 Number of Sequences: 18737 Number of extensions: 10790 Number of successful extensions: 202 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 202 Number of HSP's gapped (non-prelim): 0 length of query: 619 length of database: 41,270,998 effective HSP length: 17 effective length of query: 602 effective length of database: 40,952,469 effective search space: 24653386338 effective search space used: 24653386338 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA567100|AA567100 GM01072.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM01072 5prime, mRNA sequence. (470 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG3191-RA feature: mRNA loc=X:complement(2006911..2007159,200721... 831 0.0 >CG3191-RA feature: mRNA loc=X:complement(2006911..2007159,2007216..2007352, 2007419..2007721,2007785..2007866,2007967..2008126, 2008444..2008756);ID=FBan0003191;gene_id=FBgn0023525;gen e_sym=CG3191;sym=CG3191;scaffold=AE003423;len=1244 Length = 1244 Score = 831 bits (419), Expect = 0.0 Identities = 460/471 (97%), Gaps = 2/471 (0%) Strand = Plus / Plus Query: 1 cccaaaggtttaaaagtgattcgaaagcgtttttgaaagtgattcgaaagcgattgctgc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 13 cccaaaggtttaaaagtgattcgaaagcgtttttgaaagtgattcgaaagcgattgctgc 72 Query: 61 gtccgatagccgatagcagaccaacctggcggagggagcagcgacggagcaatcgatacc 120 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 73 gtccgatagccgatagcagaccaacctggcggagggaacagcgacggagcaatcgatacc 132 Query: 121 caggccacagcaccaatgagccgcataggtgtgagagagactgggccgagcggtacgtcc 180 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 133 caggccacagcaccaatgagccgcataggtgtgagagagactggggcgagcggtacgtcc 192 Query: 181 gagcagctgcagcgcgaacaggatagcgacacatcggaacaggcggtgcggaa-caggcc 239 |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct: 193 gagcagctgcagcgggaacaggatagcgacacatcggaacaggcggtgcggaagcagg-a 251 Query: 240 acgggatctcaaggagctcctcgagtggttccggcagaatgacaagctgcccaaggagat 299 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 252 acgggatctcaaggagctcctcgagtggttccggcaaaatgacaagctgcccaaggagat 311 Query: 300 tgatccgctgctgctccggcgcttctaccagtgcatgtttggagacgtggaggagactcg 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 312 tgatccgctgctgctccggcgcttctaccagtgcatgtttggagacgtggaggagactcg 371 Query: 360 gaagctcatcgaggtgaactacgccctggacaaccggcagcctcacctgtttatcaagag 419 |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| Sbjct: 372 gaagctcatcgaggtgaactacgccctgcgcaaccggcaccctcacctgtttatcaagag 431 Query: 420 ggatcctctagacgcggacagcaagcgcacctttgactaggcagacattct 470 ||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 432 ggatcctctagacgcggacagcaagcgcacctttgactacgcagacattct 482 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,930 Number of Sequences: 18737 Number of extensions: 13930 Number of successful extensions: 370 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 366 Number of HSP's gapped (non-prelim): 1 length of query: 470 length of database: 41,270,998 effective HSP length: 17 effective length of query: 453 effective length of database: 40,952,469 effective search space: 18551468457 effective search space used: 18551468457 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA567604|AA567604 HL01520.5prime HL Drosophila melanogaster head BlueScript Drosophila melanogaster cDNA clone HL01520 5 similar to Mhc: FBan0017927 GO:[motor protein (GO:0003774)] located on: 2L 36A8-36A9;: 08/13/2002, mRNA sequence. (777 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Mhc-RM feature: mRNA loc=2L:join(16746663..16746968,16747543..16... 938 0.0 Mhc-RL feature: mRNA loc=2L:join(16746663..16746968,16747543..16... 938 0.0 Mhc-RK feature: mRNA loc=2L:join(16746663..16746968,16747543..16... 938 0.0 Mhc-RJ feature: mRNA loc=2L:join(16746663..16746968,16747231..16... 938 0.0 Mhc-RI feature: mRNA loc=2L:join(16746663..16746968,16747543..16... 938 0.0 Mhc-RH feature: mRNA loc=2L:join(16746663..16746968,16747543..16... 938 0.0 Mhc-RG feature: mRNA loc=2L:join(16746663..16746968,16747231..16... 938 0.0 Mhc-RF feature: mRNA loc=2L:join(16746663..16746968,16747543..16... 938 0.0 Mhc-RE feature: mRNA loc=2L:join(16746663..16746968,16747231..16... 938 0.0 Mhc-RD feature: mRNA loc=2L:join(16746663..16746968,16747543..16... 938 0.0 Mhc-RC feature: mRNA loc=2L:join(16746663..16746968,16747231..16... 938 0.0 Mhc-RB feature: mRNA loc=2L:join(16746663..16746968,16747543..16... 938 0.0 Mhc-RA feature: mRNA loc=2L:join(16746663..16746968,16747543..16... 938 0.0 >Mhc-RM feature: mRNA loc=2L:join(16746663..16746968,16747543..16747686, 16748541..16748921,16748995..16749058,16749127..16749225, 16751361..16751464,16752534..16752941,16753767..16753937, 16754934..16755523,16756474..16756591,16758634..16758897, 16760428..16760637,16760859..16761745,16761917..16761995, 16762750..16763925,16763993..16764898,16765163..16765641, 16766105..16766850);ID=FBan0017927;gene_id=FBgn0002741;ge ne_sym=Mhc;sym=CG17927;scaffold=AE003652;len=7132 Length = 7132 Score = 938 bits (473), Expect = 0.0 Identities = 487/494 (98%) Strand = Plus / Minus Query: 1 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7088 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 7029 Query: 61 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7028 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 6969 Query: 121 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6968 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 6909 Query: 181 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6908 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 6849 Query: 241 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6848 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 6789 Query: 301 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6788 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 6729 Query: 361 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6728 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 6669 Query: 421 gtgatcgattgttgttatatgattttannnnnnngcctaagtgcatctggcgttgttggt 480 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 6668 gtgatcgattgttgttatatgattttatttttttgcctaagtgcatctggcgttgttggt 6609 Query: 481 ggtttgcctcccgt 494 |||||||||||||| Sbjct: 6608 ggtttgcctcccgt 6595 >Mhc-RL feature: mRNA loc=2L:join(16746663..16746968,16747543..16747686, 16748541..16748921,16748995..16749058,16749127..16749225, 16751361..16751464,16752534..16752941,16753295..16753465, 16754934..16755523,16756474..16756591,16758634..16758897, 16760428..16760637,16760859..16761745,16761917..16761995, 16762750..16763925,16763993..16764898,16765163..16765641, 16766105..16766850);ID=FBan0017927;gene_id=FBgn0002741;ge ne_sym=Mhc;sym=CG17927;scaffold=AE003652;len=7132 Length = 7132 Score = 938 bits (473), Expect = 0.0 Identities = 487/494 (98%) Strand = Plus / Minus Query: 1 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7088 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 7029 Query: 61 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7028 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 6969 Query: 121 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6968 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 6909 Query: 181 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6908 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 6849 Query: 241 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6848 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 6789 Query: 301 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6788 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 6729 Query: 361 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6728 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 6669 Query: 421 gtgatcgattgttgttatatgattttannnnnnngcctaagtgcatctggcgttgttggt 480 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 6668 gtgatcgattgttgttatatgattttatttttttgcctaagtgcatctggcgttgttggt 6609 Query: 481 ggtttgcctcccgt 494 |||||||||||||| Sbjct: 6608 ggtttgcctcccgt 6595 >Mhc-RK feature: mRNA loc=2L:join(16746663..16746968,16747543..16747686, 16748541..16748921,16748995..16749058,16749127..16749225, 16751361..16751464,16752534..16752941,16753295..16753465, 16754934..16755523,16755715..16755832,16758634..16758897, 16760428..16760637,16760859..16761745,16761917..16761995, 16762750..16763925,16763993..16764898,16765163..16765641, 16766105..16766850);ID=FBan0017927;gene_id=FBgn0002741;ge ne_sym=Mhc;sym=CG17927;scaffold=AE003652;len=7132 Length = 7132 Score = 938 bits (473), Expect = 0.0 Identities = 487/494 (98%) Strand = Plus / Minus Query: 1 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7088 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 7029 Query: 61 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7028 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 6969 Query: 121 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6968 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 6909 Query: 181 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6908 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 6849 Query: 241 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6848 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 6789 Query: 301 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6788 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 6729 Query: 361 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6728 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 6669 Query: 421 gtgatcgattgttgttatatgattttannnnnnngcctaagtgcatctggcgttgttggt 480 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 6668 gtgatcgattgttgttatatgattttatttttttgcctaagtgcatctggcgttgttggt 6609 Query: 481 ggtttgcctcccgt 494 |||||||||||||| Sbjct: 6608 ggtttgcctcccgt 6595 >Mhc-RJ feature: mRNA loc=2L:join(16746663..16746968,16747231..16747374, 16748541..16748921,16748995..16749058,16749127..16749225, 16750026..16750123,16752534..16752941,16753767..16753937, 16754934..16755523,16757812..16757929,16758634..16758897, 16760428..16760637,16760859..16761745,16762335..16762413, 16762750..16763925,16763993..16764898, 16766105..16766850);ID=FBan0017927;gene_id=FBgn0002741;ge ne_sym=Mhc;sym=CG17927;scaffold=AE003652;len=6647 Length = 6647 Score = 938 bits (473), Expect = 0.0 Identities = 487/494 (98%) Strand = Plus / Minus Query: 1 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6603 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 6544 Query: 61 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6543 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 6484 Query: 121 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6483 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 6424 Query: 181 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6423 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 6364 Query: 241 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6363 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 6304 Query: 301 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6303 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 6244 Query: 361 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6243 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 6184 Query: 421 gtgatcgattgttgttatatgattttannnnnnngcctaagtgcatctggcgttgttggt 480 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 6183 gtgatcgattgttgttatatgattttatttttttgcctaagtgcatctggcgttgttggt 6124 Query: 481 ggtttgcctcccgt 494 |||||||||||||| Sbjct: 6123 ggtttgcctcccgt 6110 >Mhc-RI feature: mRNA loc=2L:join(16746663..16746968,16747543..16747686, 16748541..16748921,16748995..16749058,16749127..16749225, 16749427..16749530,16752534..16752941,16754347..16754517, 16754934..16755523,16757177..16757294,16758634..16758897, 16760428..16760637,16760859..16761745,16762335..16762413, 16762750..16763925,16763993..16764898, 16766105..16766850);ID=FBan0017927;gene_id=FBgn0002741;ge ne_sym=Mhc;sym=CG17927;scaffold=AE003652;len=6653 Length = 6653 Score = 938 bits (473), Expect = 0.0 Identities = 487/494 (98%) Strand = Plus / Minus Query: 1 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6609 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 6550 Query: 61 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6549 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 6490 Query: 121 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6489 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 6430 Query: 181 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6429 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 6370 Query: 241 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6369 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 6310 Query: 301 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6309 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 6250 Query: 361 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6249 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 6190 Query: 421 gtgatcgattgttgttatatgattttannnnnnngcctaagtgcatctggcgttgttggt 480 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 6189 gtgatcgattgttgttatatgattttatttttttgcctaagtgcatctggcgttgttggt 6130 Query: 481 ggtttgcctcccgt 494 |||||||||||||| Sbjct: 6129 ggtttgcctcccgt 6116 >Mhc-RH feature: mRNA loc=2L:join(16746663..16746968,16747543..16747686, 16748541..16748921,16748995..16749058,16749127..16749225, 16749427..16749530,16752534..16752941,16754347..16754517, 16754934..16755523,16757812..16757929,16758634..16758897, 16760428..16760637,16760859..16761745,16762335..16762413, 16762750..16763925,16763993..16764898, 16766105..16766850);ID=FBan0017927;gene_id=FBgn0002741;ge ne_sym=Mhc;sym=CG17927;scaffold=AE003652;len=6653 Length = 6653 Score = 938 bits (473), Expect = 0.0 Identities = 487/494 (98%) Strand = Plus / Minus Query: 1 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6609 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 6550 Query: 61 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6549 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 6490 Query: 121 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6489 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 6430 Query: 181 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6429 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 6370 Query: 241 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6369 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 6310 Query: 301 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6309 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 6250 Query: 361 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6249 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 6190 Query: 421 gtgatcgattgttgttatatgattttannnnnnngcctaagtgcatctggcgttgttggt 480 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 6189 gtgatcgattgttgttatatgattttatttttttgcctaagtgcatctggcgttgttggt 6130 Query: 481 ggtttgcctcccgt 494 |||||||||||||| Sbjct: 6129 ggtttgcctcccgt 6116 >Mhc-RG feature: mRNA loc=2L:join(16746663..16746968,16747231..16747374, 16748541..16748921,16748995..16749058,16749127..16749225, 16749427..16749530,16752534..16752941,16753767..16753937, 16754934..16755523,16757812..16757929,16758634..16758897, 16760428..16760637,16760859..16761745,16762335..16762413, 16762750..16763925,16763993..16764898, 16766105..16766850);ID=FBan0017927;gene_id=FBgn0002741;ge ne_sym=Mhc;sym=CG17927;scaffold=AE003652;len=6653 Length = 6653 Score = 938 bits (473), Expect = 0.0 Identities = 487/494 (98%) Strand = Plus / Minus Query: 1 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6609 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 6550 Query: 61 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6549 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 6490 Query: 121 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6489 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 6430 Query: 181 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6429 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 6370 Query: 241 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6369 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 6310 Query: 301 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6309 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 6250 Query: 361 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6249 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 6190 Query: 421 gtgatcgattgttgttatatgattttannnnnnngcctaagtgcatctggcgttgttggt 480 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 6189 gtgatcgattgttgttatatgattttatttttttgcctaagtgcatctggcgttgttggt 6130 Query: 481 ggtttgcctcccgt 494 |||||||||||||| Sbjct: 6129 ggtttgcctcccgt 6116 >Mhc-RF feature: mRNA loc=2L:join(16746663..16746968,16747543..16747686, 16748541..16748921,16748995..16749058,16749127..16749225, 16749427..16749530,16752534..16752941,16753767..16753937, 16754934..16755523,16756089..16756206,16758634..16758897, 16760428..16760637,16760859..16761745,16762335..16762413, 16762750..16763925,16763993..16764898, 16766105..16766850);ID=FBan0017927;gene_id=FBgn0002741;ge ne_sym=Mhc;sym=CG17927;scaffold=AE003652;len=6653 Length = 6653 Score = 938 bits (473), Expect = 0.0 Identities = 487/494 (98%) Strand = Plus / Minus Query: 1 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6609 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 6550 Query: 61 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6549 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 6490 Query: 121 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6489 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 6430 Query: 181 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6429 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 6370 Query: 241 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6369 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 6310 Query: 301 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6309 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 6250 Query: 361 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6249 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 6190 Query: 421 gtgatcgattgttgttatatgattttannnnnnngcctaagtgcatctggcgttgttggt 480 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 6189 gtgatcgattgttgttatatgattttatttttttgcctaagtgcatctggcgttgttggt 6130 Query: 481 ggtttgcctcccgt 494 |||||||||||||| Sbjct: 6129 ggtttgcctcccgt 6116 >Mhc-RE feature: mRNA loc=2L:join(16746663..16746968,16747231..16747374, 16748541..16748921,16748995..16749058,16749127..16749225, 16749427..16749530,16752534..16752941,16754347..16754517, 16754934..16755523,16757812..16757929,16758634..16758897, 16760428..16760637,16760859..16761745,16762335..16762413, 16762750..16763925,16763993..16764898, 16766105..16766850);ID=FBan0017927;gene_id=FBgn0002741;ge ne_sym=Mhc;sym=CG17927;scaffold=AE003652;len=6653 Length = 6653 Score = 938 bits (473), Expect = 0.0 Identities = 487/494 (98%) Strand = Plus / Minus Query: 1 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6609 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 6550 Query: 61 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6549 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 6490 Query: 121 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6489 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 6430 Query: 181 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6429 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 6370 Query: 241 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6369 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 6310 Query: 301 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6309 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 6250 Query: 361 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6249 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 6190 Query: 421 gtgatcgattgttgttatatgattttannnnnnngcctaagtgcatctggcgttgttggt 480 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 6189 gtgatcgattgttgttatatgattttatttttttgcctaagtgcatctggcgttgttggt 6130 Query: 481 ggtttgcctcccgt 494 |||||||||||||| Sbjct: 6129 ggtttgcctcccgt 6116 >Mhc-RD feature: mRNA loc=2L:join(16746663..16746968,16747543..16747686, 16748541..16748921,16748995..16749058,16749127..16749225, 16749427..16749530,16752534..16752941,16753767..16753937, 16754934..16755523,16757177..16757294,16758634..16758897, 16760428..16760637,16760859..16761745,16762335..16762413, 16762750..16763925,16763993..16764898, 16766105..16766850);ID=FBan0017927;gene_id=FBgn0002741;ge ne_sym=Mhc;sym=CG17927;scaffold=AE003652;len=6653 Length = 6653 Score = 938 bits (473), Expect = 0.0 Identities = 487/494 (98%) Strand = Plus / Minus Query: 1 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6609 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 6550 Query: 61 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6549 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 6490 Query: 121 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6489 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 6430 Query: 181 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6429 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 6370 Query: 241 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6369 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 6310 Query: 301 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6309 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 6250 Query: 361 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6249 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 6190 Query: 421 gtgatcgattgttgttatatgattttannnnnnngcctaagtgcatctggcgttgttggt 480 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 6189 gtgatcgattgttgttatatgattttatttttttgcctaagtgcatctggcgttgttggt 6130 Query: 481 ggtttgcctcccgt 494 |||||||||||||| Sbjct: 6129 ggtttgcctcccgt 6116 >Mhc-RC feature: mRNA loc=2L:join(16746663..16746968,16747231..16747374, 16748541..16748921,16748995..16749058,16749127..16749225, 16749427..16749530,16752534..16752941,16753767..16753937, 16754934..16755523,16757177..16757294,16758634..16758897, 16760428..16760637,16760859..16761745,16762335..16762413, 16762750..16763925,16763993..16764898, 16766105..16766850);ID=FBan0017927;gene_id=FBgn0002741;ge ne_sym=Mhc;sym=CG17927;scaffold=AE003652;len=6653 Length = 6653 Score = 938 bits (473), Expect = 0.0 Identities = 487/494 (98%) Strand = Plus / Minus Query: 1 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6609 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 6550 Query: 61 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6549 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 6490 Query: 121 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6489 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 6430 Query: 181 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6429 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 6370 Query: 241 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6369 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 6310 Query: 301 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6309 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 6250 Query: 361 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6249 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 6190 Query: 421 gtgatcgattgttgttatatgattttannnnnnngcctaagtgcatctggcgttgttggt 480 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 6189 gtgatcgattgttgttatatgattttatttttttgcctaagtgcatctggcgttgttggt 6130 Query: 481 ggtttgcctcccgt 494 |||||||||||||| Sbjct: 6129 ggtttgcctcccgt 6116 >Mhc-RB feature: mRNA loc=2L:join(16746663..16746968,16747543..16747686, 16748541..16748921,16748995..16749058,16749127..16749225, 16751361..16751464,16752534..16752941,16753767..16753937, 16754934..16755523,16756474..16756591,16758634..16758897, 16760428..16760637,16760859..16761745,16761917..16761995, 16762750..16763925,16763993..16764898, 16766105..16766850);ID=FBan0017927;gene_id=FBgn0002741;ge ne_sym=Mhc;sym=CG17927;scaffold=AE003652;len=6653 Length = 6653 Score = 938 bits (473), Expect = 0.0 Identities = 487/494 (98%) Strand = Plus / Minus Query: 1 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6609 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 6550 Query: 61 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6549 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 6490 Query: 121 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6489 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 6430 Query: 181 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6429 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 6370 Query: 241 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6369 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 6310 Query: 301 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6309 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 6250 Query: 361 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6249 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 6190 Query: 421 gtgatcgattgttgttatatgattttannnnnnngcctaagtgcatctggcgttgttggt 480 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 6189 gtgatcgattgttgttatatgattttatttttttgcctaagtgcatctggcgttgttggt 6130 Query: 481 ggtttgcctcccgt 494 |||||||||||||| Sbjct: 6129 ggtttgcctcccgt 6116 >Mhc-RA feature: mRNA loc=2L:join(16746663..16746968,16747543..16747686, 16748541..16748921,16748995..16749058,16749127..16749225, 16749427..16749530,16752534..16752941,16753767..16753937, 16754934..16755523,16757812..16757929,16758634..16758897, 16760428..16760637,16760859..16761745,16762335..16762413, 16762750..16763925,16763993..16764898, 16766105..16766850);ID=FBan0017927;gene_id=FBgn0002741;ge ne_sym=Mhc;sym=CG17927;scaffold=AE003652;len=6653 Length = 6653 Score = 938 bits (473), Expect = 0.0 Identities = 487/494 (98%) Strand = Plus / Minus Query: 1 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6609 tttagtgtcaagtgatgatcttatctccctatcattgttagatagagtcagagttaaaca 6550 Query: 61 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6549 taaacataagcgcagtgtgtagctcgtgtcgtccgtaagtcttgtctggtctgcatgaca 6490 Query: 121 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6489 aacaatattgggagtacatatagagcaaaatattcgaactgcgggcgacatttaccggcg 6430 Query: 181 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6429 gacacctccgcggggccttcattttgacggggctcacgtttcgcgattattctcatgttg 6370 Query: 241 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6369 ttcggttgagagtcgatggttctttcatagttagttggttgaatgcatttcgaaagttgt 6310 Query: 301 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6309 ataaaaatatataaatacaaatacaaatacaggtccagcgagcagtgtccccatggcaaa 6250 Query: 361 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6249 tgtcgcgcttacacaatagcctgttactgatcacttatgtattatgtatgctaatcgatg 6190 Query: 421 gtgatcgattgttgttatatgattttannnnnnngcctaagtgcatctggcgttgttggt 480 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 6189 gtgatcgattgttgttatatgattttatttttttgcctaagtgcatctggcgttgttggt 6130 Query: 481 ggtttgcctcccgt 494 |||||||||||||| Sbjct: 6129 ggtttgcctcccgt 6116 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,993 Number of Sequences: 18737 Number of extensions: 13993 Number of successful extensions: 504 Number of sequences better than 1.0e-100: 13 Number of HSP's better than 0.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 462 Number of HSP's gapped (non-prelim): 29 length of query: 777 length of database: 41,270,998 effective HSP length: 17 effective length of query: 760 effective length of database: 40,952,469 effective search space: 31123876440 effective search space used: 31123876440 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA567992|AA567992 HL02093..5prime HL Drosophila Head Drosophila melanogaster cDNA clone HL02093 5', mRNA sequence. (814 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,973 Number of Sequences: 18737 Number of extensions: 13973 Number of successful extensions: 234 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 234 Number of HSP's gapped (non-prelim): 0 length of query: 814 length of database: 41,270,998 effective HSP length: 17 effective length of query: 797 effective length of database: 40,952,469 effective search space: 32639117793 effective search space used: 32639117793 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA694807|AA694807 GM01575.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM01575 5prime similar to M20571: gro FBgn0001139 PID:g157365 SWISS-PROT:P16371, mRNA sequence. (585 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value gro-RE feature: mRNA loc=3R:join(21856797..21856988,21858082..21... 983 0.0 gro-RD feature: mRNA loc=3R:join(21857217..21857271,21858082..21... 555 e-157 gro-RC feature: mRNA loc=3R:join(21857907..21857990,21858082..21... 555 e-157 gro-RB feature: mRNA loc=3R:join(21856797..21856988,21858082..21... 555 e-157 gro-RA feature: mRNA loc=3R:join(21857217..21857351,21858082..21... 555 e-157 >gro-RE feature: mRNA loc=3R:join(21856797..21856988,21858082..21858466, 21858602..21858696,21859397..21859460,21859531..21859713, 21860091..21860123,21860556..21860750,21860816..21860914, 21861623..21861679,21861820..21861996,21862061..21862332, 21862583..21863256,21863323..21863522, 21863585..21864999);ID=FBan0008384;gene_id=FBgn0001139;ge ne_sym=gro;sym=CG8384;scaffold=AE003754;len=4041 Length = 4041 Score = 983 bits (496), Expect = 0.0 Identities = 567/587 (96%), Gaps = 3/587 (0%) Strand = Plus / Plus Query: 1 gagatgcagcccaattaggtaatgtactacgagatgtcctatggccttaacgtggagatg 60 |||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||| Sbjct: 713 gagatgcagcgccattatgttatgtactacgagatgtcctatggccttaacgtggagatg 772 Query: 61 cacaagcagaccgagatcgccaagcggctgaacacactgatcaaccagctacttccattc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 773 cacaagcagaccgagatcgccaagcggctgaacacactgatcaaccagctacttccattc 832 Query: 121 cttcaggccgaccaccagcagcaagtgctgcaggcggtggagcgggcgaacgaggtgacc 180 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 833 cttcaggccgaccaccagcagcaagtgctgcaggcggtggagcgggcgaagcaggtgacc 892 Query: 181 atgcaggagctcaacctgatcattgggcatcagcagcaacatggaattcagcaactttta 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 893 atgcaggagctcaacctgatcattgggcatcagcagcaacatggaattcagcaactttta 952 Query: 241 caacagatccacgcccagcaagtgccaggtggaccacctcagccgatgggcgcactgaat 300 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 953 caacagatccacgcccagcaggtgccaggtggaccacctcagccgatgggcgcactgaat 1012 Query: 301 ccgtttggcgccct-ggcaccccantgtggcctgccacacggaccgcaagctgt-ctgaa 358 |||||||||||||| ||| || | || |||||||||||||||||||||| | | ||||| Sbjct: 1013 ccgtttggcgccctgggcgccaccatg-ggcctgccacacggaccgcaaggtctgctgaa 1071 Query: 359 caaaccgcccgaacaccacaggccggacatcaagccgacgggtctagaggggccagcagc 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1072 caaaccgcccgaacaccacaggccggacatcaagccgacgggtctagaggggccagcagc 1131 Query: 419 cgccgaggagcgattgcgccattcggtttcgccggccgatcgtgagaagtatcgcacacg 478 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 1132 cgccgaggagcgattgcgcaattcggtttcgccggccgatcgtgagaagtatcgcacacg 1191 Query: 479 ctcgcagctggacatcgagaacgactcgaagcgtcgacaagatgagaaactgcaagagga 538 ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1192 ctcgccgctggacatcgagaacgactcgaagcgtcgaaaagatgagaaactgcaagagga 1251 Query: 539 tgaaggcgacaaaagcgatcaagatttagtcgtagatgttgcaaatg 585 ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1252 tgaaggcgagaaaagcgatcaagatttagtcgtagatgttgcaaatg 1298 >gro-RD feature: mRNA loc=3R:join(21857217..21857271,21858082..21858466, 21858602..21858696,21859397..21859460,21859531..21859713, 21860556..21860750,21860816..21860914,21861623..21861679, 21861820..21861996,21862061..21862332,21862583..21863256, 21863323..21863522, 21863585..21864999);ID=FBan0008384;gene_id=FBgn0001139;ge ne_sym=gro;sym=CG8384;scaffold=AE003754;len=3871 Length = 3871 Score = 555 bits (280), Expect = e-157 Identities = 333/347 (95%), Gaps = 3/347 (0%) Strand = Plus / Plus Query: 241 caacagatccacgcccagcaagtgccaggtggaccacctcagccgatgggcgcactgaat 300 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 783 caacagatccacgcccagcaggtgccaggtggaccacctcagccgatgggcgcactgaat 842 Query: 301 ccgtttggcgccctgg-caccccantgtggcctgccacacggaccgcaagctgt-ctgaa 358 |||||||||||||||| | || | || |||||||||||||||||||||| | | ||||| Sbjct: 843 ccgtttggcgccctgggcgccaccatg-ggcctgccacacggaccgcaaggtctgctgaa 901 Query: 359 caaaccgcccgaacaccacaggccggacatcaagccgacgggtctagaggggccagcagc 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 902 caaaccgcccgaacaccacaggccggacatcaagccgacgggtctagaggggccagcagc 961 Query: 419 cgccgaggagcgattgcgccattcggtttcgccggccgatcgtgagaagtatcgcacacg 478 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 962 cgccgaggagcgattgcgcaattcggtttcgccggccgatcgtgagaagtatcgcacacg 1021 Query: 479 ctcgcagctggacatcgagaacgactcgaagcgtcgacaagatgagaaactgcaagagga 538 ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1022 ctcgccgctggacatcgagaacgactcgaagcgtcgaaaagatgagaaactgcaagagga 1081 Query: 539 tgaaggcgacaaaagcgatcaagatttagtcgtagatgttgcaaatg 585 ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1082 tgaaggcgagaaaagcgatcaagatttagtcgtagatgttgcaaatg 1128 Score = 367 bits (185), Expect = e-101 Identities = 203/209 (97%) Strand = Plus / Plus Query: 1 gagatgcagcccaattaggtaatgtactacgagatgtcctatggccttaacgtggagatg 60 |||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||| Sbjct: 576 gagatgcagcgccattatgttatgtactacgagatgtcctatggccttaacgtggagatg 635 Query: 61 cacaagcagaccgagatcgccaagcggctgaacacactgatcaaccagctacttccattc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 636 cacaagcagaccgagatcgccaagcggctgaacacactgatcaaccagctacttccattc 695 Query: 121 cttcaggccgaccaccagcagcaagtgctgcaggcggtggagcgggcgaacgaggtgacc 180 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 696 cttcaggccgaccaccagcagcaagtgctgcaggcggtggagcgggcgaagcaggtgacc 755 Query: 181 atgcaggagctcaacctgatcattgggca 209 ||||||||||||||||||||||||||||| Sbjct: 756 atgcaggagctcaacctgatcattgggca 784 >gro-RC feature: mRNA loc=3R:join(21857907..21857990,21858082..21858466, 21858602..21858696,21859397..21859460,21859531..21859713, 21860556..21860750,21860816..21860914,21861623..21861679, 21861820..21861996,21862061..21862332,21862583..21863256, 21863323..21863522, 21863585..21864999);ID=FBan0008384;gene_id=FBgn0001139;ge ne_sym=gro;sym=CG8384;scaffold=AE003754;len=3900 Length = 3900 Score = 555 bits (280), Expect = e-157 Identities = 333/347 (95%), Gaps = 3/347 (0%) Strand = Plus / Plus Query: 241 caacagatccacgcccagcaagtgccaggtggaccacctcagccgatgggcgcactgaat 300 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 812 caacagatccacgcccagcaggtgccaggtggaccacctcagccgatgggcgcactgaat 871 Query: 301 ccgtttggcgccctgg-caccccantgtggcctgccacacggaccgcaagctgt-ctgaa 358 |||||||||||||||| | || | || |||||||||||||||||||||| | | ||||| Sbjct: 872 ccgtttggcgccctgggcgccaccatg-ggcctgccacacggaccgcaaggtctgctgaa 930 Query: 359 caaaccgcccgaacaccacaggccggacatcaagccgacgggtctagaggggccagcagc 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 931 caaaccgcccgaacaccacaggccggacatcaagccgacgggtctagaggggccagcagc 990 Query: 419 cgccgaggagcgattgcgccattcggtttcgccggccgatcgtgagaagtatcgcacacg 478 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 991 cgccgaggagcgattgcgcaattcggtttcgccggccgatcgtgagaagtatcgcacacg 1050 Query: 479 ctcgcagctggacatcgagaacgactcgaagcgtcgacaagatgagaaactgcaagagga 538 ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1051 ctcgccgctggacatcgagaacgactcgaagcgtcgaaaagatgagaaactgcaagagga 1110 Query: 539 tgaaggcgacaaaagcgatcaagatttagtcgtagatgttgcaaatg 585 ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1111 tgaaggcgagaaaagcgatcaagatttagtcgtagatgttgcaaatg 1157 Score = 367 bits (185), Expect = e-101 Identities = 203/209 (97%) Strand = Plus / Plus Query: 1 gagatgcagcccaattaggtaatgtactacgagatgtcctatggccttaacgtggagatg 60 |||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||| Sbjct: 605 gagatgcagcgccattatgttatgtactacgagatgtcctatggccttaacgtggagatg 664 Query: 61 cacaagcagaccgagatcgccaagcggctgaacacactgatcaaccagctacttccattc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 665 cacaagcagaccgagatcgccaagcggctgaacacactgatcaaccagctacttccattc 724 Query: 121 cttcaggccgaccaccagcagcaagtgctgcaggcggtggagcgggcgaacgaggtgacc 180 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 725 cttcaggccgaccaccagcagcaagtgctgcaggcggtggagcgggcgaagcaggtgacc 784 Query: 181 atgcaggagctcaacctgatcattgggca 209 ||||||||||||||||||||||||||||| Sbjct: 785 atgcaggagctcaacctgatcattgggca 813 >gro-RB feature: mRNA loc=3R:join(21856797..21856988,21858082..21858466, 21858602..21858696,21859397..21859460,21859531..21859713, 21860556..21860750,21860816..21860914,21861623..21861679, 21861820..21861996,21862061..21862332,21862583..21863256, 21863323..21863522, 21863585..21864999);ID=FBan0008384;gene_id=FBgn0001139;ge ne_sym=gro;sym=CG8384;scaffold=AE003754;len=4008 Length = 4008 Score = 555 bits (280), Expect = e-157 Identities = 333/347 (95%), Gaps = 3/347 (0%) Strand = Plus / Plus Query: 241 caacagatccacgcccagcaagtgccaggtggaccacctcagccgatgggcgcactgaat 300 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 920 caacagatccacgcccagcaggtgccaggtggaccacctcagccgatgggcgcactgaat 979 Query: 301 ccgtttggcgccctgg-caccccantgtggcctgccacacggaccgcaagctgt-ctgaa 358 |||||||||||||||| | || | || |||||||||||||||||||||| | | ||||| Sbjct: 980 ccgtttggcgccctgggcgccaccatg-ggcctgccacacggaccgcaaggtctgctgaa 1038 Query: 359 caaaccgcccgaacaccacaggccggacatcaagccgacgggtctagaggggccagcagc 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1039 caaaccgcccgaacaccacaggccggacatcaagccgacgggtctagaggggccagcagc 1098 Query: 419 cgccgaggagcgattgcgccattcggtttcgccggccgatcgtgagaagtatcgcacacg 478 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 1099 cgccgaggagcgattgcgcaattcggtttcgccggccgatcgtgagaagtatcgcacacg 1158 Query: 479 ctcgcagctggacatcgagaacgactcgaagcgtcgacaagatgagaaactgcaagagga 538 ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1159 ctcgccgctggacatcgagaacgactcgaagcgtcgaaaagatgagaaactgcaagagga 1218 Query: 539 tgaaggcgacaaaagcgatcaagatttagtcgtagatgttgcaaatg 585 ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1219 tgaaggcgagaaaagcgatcaagatttagtcgtagatgttgcaaatg 1265 Score = 367 bits (185), Expect = e-101 Identities = 203/209 (97%) Strand = Plus / Plus Query: 1 gagatgcagcccaattaggtaatgtactacgagatgtcctatggccttaacgtggagatg 60 |||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||| Sbjct: 713 gagatgcagcgccattatgttatgtactacgagatgtcctatggccttaacgtggagatg 772 Query: 61 cacaagcagaccgagatcgccaagcggctgaacacactgatcaaccagctacttccattc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 773 cacaagcagaccgagatcgccaagcggctgaacacactgatcaaccagctacttccattc 832 Query: 121 cttcaggccgaccaccagcagcaagtgctgcaggcggtggagcgggcgaacgaggtgacc 180 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 833 cttcaggccgaccaccagcagcaagtgctgcaggcggtggagcgggcgaagcaggtgacc 892 Query: 181 atgcaggagctcaacctgatcattgggca 209 ||||||||||||||||||||||||||||| Sbjct: 893 atgcaggagctcaacctgatcattgggca 921 >gro-RA feature: mRNA loc=3R:join(21857217..21857351,21858082..21858466, 21858602..21858696,21859397..21859460,21859531..21859713, 21860556..21860750,21860816..21860914,21861623..21861679, 21861820..21861996,21862061..21862332,21862583..21863256, 21863323..21863522, 21863585..21864999);ID=FBan0008384;gene_id=FBgn0001139;ge ne_sym=gro;sym=CG8384;scaffold=AE003754;len=3951 Length = 3951 Score = 555 bits (280), Expect = e-157 Identities = 333/347 (95%), Gaps = 3/347 (0%) Strand = Plus / Plus Query: 241 caacagatccacgcccagcaagtgccaggtggaccacctcagccgatgggcgcactgaat 300 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 863 caacagatccacgcccagcaggtgccaggtggaccacctcagccgatgggcgcactgaat 922 Query: 301 ccgtttggcgccctgg-caccccantgtggcctgccacacggaccgcaagctgt-ctgaa 358 |||||||||||||||| | || | || |||||||||||||||||||||| | | ||||| Sbjct: 923 ccgtttggcgccctgggcgccaccatg-ggcctgccacacggaccgcaaggtctgctgaa 981 Query: 359 caaaccgcccgaacaccacaggccggacatcaagccgacgggtctagaggggccagcagc 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 982 caaaccgcccgaacaccacaggccggacatcaagccgacgggtctagaggggccagcagc 1041 Query: 419 cgccgaggagcgattgcgccattcggtttcgccggccgatcgtgagaagtatcgcacacg 478 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 1042 cgccgaggagcgattgcgcaattcggtttcgccggccgatcgtgagaagtatcgcacacg 1101 Query: 479 ctcgcagctggacatcgagaacgactcgaagcgtcgacaagatgagaaactgcaagagga 538 ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1102 ctcgccgctggacatcgagaacgactcgaagcgtcgaaaagatgagaaactgcaagagga 1161 Query: 539 tgaaggcgacaaaagcgatcaagatttagtcgtagatgttgcaaatg 585 ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1162 tgaaggcgagaaaagcgatcaagatttagtcgtagatgttgcaaatg 1208 Score = 367 bits (185), Expect = e-101 Identities = 203/209 (97%) Strand = Plus / Plus Query: 1 gagatgcagcccaattaggtaatgtactacgagatgtcctatggccttaacgtggagatg 60 |||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||| Sbjct: 656 gagatgcagcgccattatgttatgtactacgagatgtcctatggccttaacgtggagatg 715 Query: 61 cacaagcagaccgagatcgccaagcggctgaacacactgatcaaccagctacttccattc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 716 cacaagcagaccgagatcgccaagcggctgaacacactgatcaaccagctacttccattc 775 Query: 121 cttcaggccgaccaccagcagcaagtgctgcaggcggtggagcgggcgaacgaggtgacc 180 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 776 cttcaggccgaccaccagcagcaagtgctgcaggcggtggagcgggcgaagcaggtgacc 835 Query: 181 atgcaggagctcaacctgatcattgggca 209 ||||||||||||||||||||||||||||| Sbjct: 836 atgcaggagctcaacctgatcattgggca 864 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 23,299 Number of Sequences: 18737 Number of extensions: 23299 Number of successful extensions: 737 Number of sequences better than 1.0e-100: 5 Number of HSP's better than 0.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 718 Number of HSP's gapped (non-prelim): 14 length of query: 585 length of database: 41,270,998 effective HSP length: 17 effective length of query: 568 effective length of database: 40,952,469 effective search space: 23261002392 effective search space used: 23261002392 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA694947|AA694947 GM01832.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM01832 5, mRNA sequence. (650 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG3861-RB feature: mRNA loc=X:join(6091005..6091330,6099278..610... 511 e-144 CG3861-RA feature: mRNA loc=X:join(6092657..6092857,6099278..610... 511 e-144 >CG3861-RB feature: mRNA loc=X:join(6091005..6091330,6099278..6100255, 6100368..6101569);ID=FBan0003861;gene_id=FBgn0029869;gene _sym=CG3861;sym=CG3861;scaffold=AE003437;len=2506 Length = 2506 Score = 511 bits (258), Expect = e-144 Identities = 278/288 (96%) Strand = Plus / Plus Query: 299 gggacaggcagagagagtaaaatgtttgcgcctattgtttatgttcagcatttcccccac 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2146 gggacaggcagagagagtaaaatgtttgcgcctattgtttatgttcagcatttcccccac 2205 Query: 359 ccgaaaccgcccacgatacccactctttattaagtttgttatgtttatattttgttcatc 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2206 ccgaaaccgcccacgatacccactctttattaagtttgttatgtttatattttgttcatc 2265 Query: 419 ttagccgatcgatggactaaccacgacacgaccttaatgatttatcccccaaaaagcccg 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2266 ttagccgatcgatggactaaccacgacacgaccttaatgatttatcccccaaaaagcccg 2325 Query: 479 cccgacccaccagcacccaccccgcctgaaaaacctnnnnnnnnnttactaacttgataa 538 |||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 2326 cccgacccaccagcacccaccccgcctgaaaaacctaaaaaaaaattactaacttgataa 2385 Query: 539 cattttacttttaatttaactataatttattatgcanacaagatacaa 586 |||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 2386 cattttacttttaatttaactataatttattatgcaaacaagatacaa 2433 Score = 460 bits (232), Expect = e-129 Identities = 232/232 (100%) Strand = Plus / Plus Query: 1 attggatggatatcgatatgacgacgctgatattgagggagttggagatgtgtagttgag 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1850 attggatggatatcgatatgacgacgctgatattgagggagttggagatgtgtagttgag 1909 Query: 61 gagaagagcaaccaaatacgaaccaataggacaaaaacgaaaaccagaagaaaactgcaa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1910 gagaagagcaaccaaatacgaaccaataggacaaaaacgaaaaccagaagaaaactgcaa 1969 Query: 121 cacactgcaactgcaaaacaataagttggaaataaggcagaaacatatttttagtagtaa 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1970 cacactgcaactgcaaaacaataagttggaaataaggcagaaacatatttttagtagtaa 2029 Query: 181 aataattaacgaagggcaaccgacaagcaaccacttaattatttgtataagc 232 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2030 aataattaacgaagggcaaccgacaagcaaccacttaattatttgtataagc 2081 >CG3861-RA feature: mRNA loc=X:join(6092657..6092857,6099278..6100255, 6100368..6101569);ID=FBan0003861;gene_id=FBgn0029869;gene _sym=CG3861;sym=CG3861;scaffold=AE003437;len=2381 Length = 2381 Score = 511 bits (258), Expect = e-144 Identities = 278/288 (96%) Strand = Plus / Plus Query: 299 gggacaggcagagagagtaaaatgtttgcgcctattgtttatgttcagcatttcccccac 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2021 gggacaggcagagagagtaaaatgtttgcgcctattgtttatgttcagcatttcccccac 2080 Query: 359 ccgaaaccgcccacgatacccactctttattaagtttgttatgtttatattttgttcatc 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2081 ccgaaaccgcccacgatacccactctttattaagtttgttatgtttatattttgttcatc 2140 Query: 419 ttagccgatcgatggactaaccacgacacgaccttaatgatttatcccccaaaaagcccg 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2141 ttagccgatcgatggactaaccacgacacgaccttaatgatttatcccccaaaaagcccg 2200 Query: 479 cccgacccaccagcacccaccccgcctgaaaaacctnnnnnnnnnttactaacttgataa 538 |||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 2201 cccgacccaccagcacccaccccgcctgaaaaacctaaaaaaaaattactaacttgataa 2260 Query: 539 cattttacttttaatttaactataatttattatgcanacaagatacaa 586 |||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 2261 cattttacttttaatttaactataatttattatgcaaacaagatacaa 2308 Score = 460 bits (232), Expect = e-129 Identities = 232/232 (100%) Strand = Plus / Plus Query: 1 attggatggatatcgatatgacgacgctgatattgagggagttggagatgtgtagttgag 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1725 attggatggatatcgatatgacgacgctgatattgagggagttggagatgtgtagttgag 1784 Query: 61 gagaagagcaaccaaatacgaaccaataggacaaaaacgaaaaccagaagaaaactgcaa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1785 gagaagagcaaccaaatacgaaccaataggacaaaaacgaaaaccagaagaaaactgcaa 1844 Query: 121 cacactgcaactgcaaaacaataagttggaaataaggcagaaacatatttttagtagtaa 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1845 cacactgcaactgcaaaacaataagttggaaataaggcagaaacatatttttagtagtaa 1904 Query: 181 aataattaacgaagggcaaccgacaagcaaccacttaattatttgtataagc 232 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1905 aataattaacgaagggcaaccgacaagcaaccacttaattatttgtataagc 1956 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,057 Number of Sequences: 18737 Number of extensions: 12057 Number of successful extensions: 253 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 247 Number of HSP's gapped (non-prelim): 6 length of query: 650 length of database: 41,270,998 effective HSP length: 17 effective length of query: 633 effective length of database: 40,952,469 effective search space: 25922912877 effective search space used: 25922912877 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA695190|AA695190 GM02380.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM02380 5prime, mRNA sequence. (342 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4865 Number of Sequences: 18737 Number of extensions: 4865 Number of successful extensions: 428 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 428 Number of HSP's gapped (non-prelim): 0 length of query: 342 length of database: 41,270,998 effective HSP length: 16 effective length of query: 326 effective length of database: 40,971,206 effective search space: 13356613156 effective search space used: 13356613156 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA695384|AA695384 GM02731.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM02731 5prime, mRNA sequence. (630 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG18811-RA feature: mRNA loc=3L:complement(18617198..18620067,18... 1168 0.0 >CG18811-RA feature: mRNA loc=3L:complement(18617198..18620067,18620147..18620313, 18620369..18620551, 18621510..18622068);ID=FBan0018811;gene_id=FBgn0042134;ge ne_sym=CG18811;sym=CG18811;scaffold=AE003519;len=3779 Length = 3779 Score = 1168 bits (589), Expect = 0.0 Identities = 615/621 (99%), Gaps = 2/621 (0%) Strand = Plus / Minus Query: 11 ttgatttgtgtgtcggcttcattttcggattcccaagttgcgttataaaggattcttttt 70 ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| Sbjct: 3299 ttgatttgtgtgtcggcttcattttcg-attccctagttgcgttataaaggattcttttt 3241 Query: 71 gatagatttccatttcttatggttgagagtggtttgcgtaacaataattgtacgtctacg 130 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3240 gatagatttccatttcttatggttgagagtggtttgcgtaacaataattgtacgtctacg 3181 Query: 131 tggccattacttgcatgttgatgattggtttccttgttttctgtatggaggttgtgttta 190 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3180 tggccattacttgcatgttgatgattggtttccttgttttctgtatggaggttgtgttta 3121 Query: 191 tggtttgcatgaattgtatgtgtgttttgtttgcggggttaatacgtattgtatgctcag 250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3120 tggtttgcatgaattgtatgtgtgttttgtttgcggggttaatacgtattgtatgctcag 3061 Query: 251 tttttgttctccagcccgagtggcatgcgttgcgactggttctgacggtttatgtagcca 310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3060 tttttgttctccagcccgagtggcatgcgttgcgactggttctgacggtttatgtagcca 3001 Query: 311 ccaccaccacctccctggttgcccgctccgccacgaccacgatcgcccatgggcctgccg 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3000 ccaccaccacctccctggttgcccgctccgccacgaccacgatcgcccatgggcctgccg 2941 Query: 371 ccgccatacgagccattcacattacgctgctggttgccaccgcgctggcctcgatagctt 430 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2940 ccgccatacgagccatttacattacgctgctggttgccaccgcgctggcctcgatagctt 2881 Query: 431 ccaccgccgccgccggaggattcgtagcgcgactccttgttgtaggtgccaccgccacct 490 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2880 ccaccgccgccgccggaggattcgtagcgcgactccttgttgtaggtgccaccgccacct 2821 Query: 491 cctccgttctggtagtagttgttgcct-caccattgctcgactcattgttgcggaagtac 549 ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| Sbjct: 2820 cctccgttctggtagtagttgttgcctccaccattgcccgactcattgttgcggaagtac 2761 Query: 550 acaccgctcgaattgcccgaattgcgtccgttcgtgttagatgagttgccgtattgacgc 609 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2760 acaccgctcgaattgcccgaattgcgtccgttcgtgttagatgagttgccgtattgacgc 2701 Query: 610 gacgggtagttgcccctgtcg 630 ||| ||||||||||||||||| Sbjct: 2700 gaccggtagttgcccctgtcg 2680 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 21,954 Number of Sequences: 18737 Number of extensions: 21954 Number of successful extensions: 1335 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1332 Number of HSP's gapped (non-prelim): 1 length of query: 630 length of database: 41,270,998 effective HSP length: 17 effective length of query: 613 effective length of database: 40,952,469 effective search space: 25103863497 effective search space used: 25103863497 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA695906|AA695906 GM04752.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM04752 5prime similar to M21017: D.melanogaster 18S, 5.8S 2S and 28S rRNA genes, complete, and 18S rRNA gene, 5' end, clone pDm238, mRNA sequence. (717 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,539 Number of Sequences: 18737 Number of extensions: 12539 Number of successful extensions: 196 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 196 Number of HSP's gapped (non-prelim): 0 length of query: 717 length of database: 41,270,998 effective HSP length: 17 effective length of query: 700 effective length of database: 40,952,469 effective search space: 28666728300 effective search space used: 28666728300 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA696493|AA696493 GM07780.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM07780 5prime, mRNA sequence. (479 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value robo-RA feature: mRNA loc=2R:complement(17736074..17738862,17738... 918 0.0 robo-RB feature: mRNA loc=2R:complement(17736074..17738862,17738... 779 0.0 >robo-RA feature: mRNA loc=2R:complement(17736074..17738862,17738938..17739269, 17739327..17739559,17739622..17739913, 17739969..17740243,17740302..17740500, 17740565..17740657,17740716..17740886, 17740952..17741033,17741095..17741255, 17741322..17741404,17741462..17741941, 17742002..17742455,17742516..17742634, 17742746..17742926,17743163..17743284, 17743352..17743584, 17744428..17744512);ID=FBan0013521;gene_id=FBgn0005631;g ene_sym=robo;sym=CG13521;scaffold=AE003458;len=6384 Length = 6384 Score = 918 bits (463), Expect = 0.0 Identities = 476/479 (99%), Gaps = 1/479 (0%) Strand = Plus / Plus Query: 1 acccacgtccaattgtgaattttcggctgcgcggtgaatcgcactaaagagcaggaaaat 60 |||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||| Sbjct: 1 acccacgtccaattgtgagttttcg-ctgcgccgtgaatcgcactaaagagcaggaaaat 59 Query: 61 agttaatttccaacagttaaattggagacccaaaaacaacgccaaaatgatcgccgctgc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 60 agttaatttccaacagttaaattggagacccaaaaacaacgccaaaatgatcgccgctgc 119 Query: 121 attgggtcatctgtagagtcgtcattgcaacagcaccaacaccataaaatgcatcccatg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 120 attgggtcatctgtagagtcgtcattgcaacagcaccaacaccataaaatgcatcccatg 179 Query: 181 catcccgaaaaccacgccatcgcccggagcacgagcaccactaataacccatctcgcagt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 180 catcccgaaaaccacgccatcgcccggagcacgagcaccactaataacccatctcgcagt 239 Query: 241 cggagcagcaggatgtggctcctgcccgcctggctgctcctcgtcctggtggccagcaat 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 240 cggagcagcaggatgtggctcctgcccgcctggctgctcctcgtcctggtggccagcaat 299 Query: 301 ggcctgccagcagtcagaggccagtaccaatcgccacgtatcatcgagcatcccacggat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 300 ggcctgccagcagtcagaggccagtaccaatcgccacgtatcatcgagcatcccacggat 359 Query: 361 ctggtcgttaagaagaatgaacccgccacgctcaactgcaaagtggagggcaagccggaa 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 360 ctggtcgttaagaagaatgaacccgccacgctcaactgcaaagtggagggcaagccggaa 419 Query: 421 cccaccattgagtggtttaaggatggcgaacccgtcagcaccaacgaaaagaaatcgca 479 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 420 cccaccattgagtggtttaaggatggcgaacccgtcagcaccaacgaaaagaaatcgca 478 >robo-RB feature: mRNA loc=2R:complement(17736074..17738862,17738938..17739269, 17739327..17739559,17739622..17739913, 17739969..17740243,17740302..17740500, 17740565..17740657,17740716..17740886, 17740952..17741033,17741095..17741255, 17741322..17741404,17741462..17741941, 17742002..17742455,17742516..17742634, 17742746..17742926,17743163..17743284, 17743352..17743584, 17743641..17743898);ID=FBan0013521;gene_id=FBgn0005631;g ene_sym=robo;sym=CG13521;scaffold=AE003458;len=6557 Length = 6557 Score = 779 bits (393), Expect = 0.0 Identities = 393/393 (100%) Strand = Plus / Plus Query: 87 gacccaaaaacaacgccaaaatgatcgccgctgcattgggtcatctgtagagtcgtcatt 146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 259 gacccaaaaacaacgccaaaatgatcgccgctgcattgggtcatctgtagagtcgtcatt 318 Query: 147 gcaacagcaccaacaccataaaatgcatcccatgcatcccgaaaaccacgccatcgcccg 206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 319 gcaacagcaccaacaccataaaatgcatcccatgcatcccgaaaaccacgccatcgcccg 378 Query: 207 gagcacgagcaccactaataacccatctcgcagtcggagcagcaggatgtggctcctgcc 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 379 gagcacgagcaccactaataacccatctcgcagtcggagcagcaggatgtggctcctgcc 438 Query: 267 cgcctggctgctcctcgtcctggtggccagcaatggcctgccagcagtcagaggccagta 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 439 cgcctggctgctcctcgtcctggtggccagcaatggcctgccagcagtcagaggccagta 498 Query: 327 ccaatcgccacgtatcatcgagcatcccacggatctggtcgttaagaagaatgaacccgc 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 499 ccaatcgccacgtatcatcgagcatcccacggatctggtcgttaagaagaatgaacccgc 558 Query: 387 cacgctcaactgcaaagtggagggcaagccggaacccaccattgagtggtttaaggatgg 446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 559 cacgctcaactgcaaagtggagggcaagccggaacccaccattgagtggtttaaggatgg 618 Query: 447 cgaacccgtcagcaccaacgaaaagaaatcgca 479 ||||||||||||||||||||||||||||||||| Sbjct: 619 cgaacccgtcagcaccaacgaaaagaaatcgca 651 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,278 Number of Sequences: 18737 Number of extensions: 15278 Number of successful extensions: 446 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 443 Number of HSP's gapped (non-prelim): 2 length of query: 479 length of database: 41,270,998 effective HSP length: 17 effective length of query: 462 effective length of database: 40,952,469 effective search space: 18920040678 effective search space used: 18920040678 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA696584|AA696584 GM07940.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM07940 5, mRNA sequence. (612 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG9924-RB feature: mRNA loc=3R:complement(9793693..9795071,97951... 759 0.0 >CG9924-RB feature: mRNA loc=3R:complement(9793693..9795071,9795138..9795280, 9795349..9795527,9795650..9795945,9796019..9796180, 9796249..9796370,9796693..9796843,9852619..9852685, 9857314..9857796);ID=FBan0009924;gene_id=FBgn0038192;gen e_sym=CG9924;sym=CG9924;scaffold=AE003702;len=2982 Length = 2982 Score = 759 bits (383), Expect = 0.0 Identities = 383/383 (100%) Strand = Plus / Plus Query: 230 gcgcagttcacacaacttggcctggaaaaagtgaaagagtattttttcggccatattgtg 289 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 262 gcgcagttcacacaacttggcctggaaaaagtgaaagagtattttttcggccatattgtg 321 Query: 290 ttgtcatagctggaaaaagtgcatttcccggccatatggagattcagatcatatgcgaat 349 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 322 ttgtcatagctggaaaaagtgcatttcccggccatatggagattcagatcatatgcgaat 381 Query: 350 aaatattcgctgagccaaagtttactcagaatccccccaatttcgagtaaatagggcgac 409 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 382 aaatattcgctgagccaaagtttactcagaatccccccaatttcgagtaaatagggcgac 441 Query: 410 ttatgtaaagcggagaacgagaaactatttacatttacaaagaaatcttgactcgcttgg 469 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 442 ttatgtaaagcggagaacgagaaactatttacatttacaaagaaatcttgactcgcttgg 501 Query: 470 ctttggcttgtaaattacaggaaggaacagcagtaataacttaaacaagattgccggtga 529 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 502 ctttggcttgtaaattacaggaaggaacagcagtaataacttaaacaagattgccggtga 561 Query: 530 acgaatgtcaggcaagccaaacagctagagtcacctcgaacctgcacgcatccagtagca 589 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 562 acgaatgtcaggcaagccaaacagctagagtcacctcgaacctgcacgcatccagtagca 621 Query: 590 cgatggcggtcagccgtgtacca 612 ||||||||||||||||||||||| Sbjct: 622 cgatggcggtcagccgtgtacca 644 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,366 Number of Sequences: 18737 Number of extensions: 10366 Number of successful extensions: 186 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 184 Number of HSP's gapped (non-prelim): 2 length of query: 612 length of database: 41,270,998 effective HSP length: 17 effective length of query: 595 effective length of database: 40,952,469 effective search space: 24366719055 effective search space used: 24366719055 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA697356|AA697356 HL02313.5prime HL Drosophila melanogaster head BlueScript Drosophila melanogaster cDNA clone HL02313 5prime, mRNA sequence. (781 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,497 Number of Sequences: 18737 Number of extensions: 14497 Number of successful extensions: 214 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 214 Number of HSP's gapped (non-prelim): 0 length of query: 781 length of database: 41,270,998 effective HSP length: 17 effective length of query: 764 effective length of database: 40,952,469 effective search space: 31287686316 effective search space used: 31287686316 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA697659|AA697659 HL02945.5prime HL Drosophila melanogaster head BlueScript Drosophila melanogaster cDNA clone HL02945 5prime, mRNA sequence. (660 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,710 Number of Sequences: 18737 Number of extensions: 13710 Number of successful extensions: 278 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 278 Number of HSP's gapped (non-prelim): 0 length of query: 660 length of database: 41,270,998 effective HSP length: 17 effective length of query: 643 effective length of database: 40,952,469 effective search space: 26332437567 effective search space used: 26332437567 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA697681|AA697681 HL02977.5prime HL Drosophila melanogaster head BlueScript Drosophila melanogaster cDNA clone HL02977 5prime similar to K01581: d.melanogaster 28s rrna gene, clone pdm238, mRNA sequence. (599 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9309 Number of Sequences: 18737 Number of extensions: 9309 Number of successful extensions: 185 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 185 Number of HSP's gapped (non-prelim): 0 length of query: 599 length of database: 41,270,998 effective HSP length: 17 effective length of query: 582 effective length of database: 40,952,469 effective search space: 23834336958 effective search space used: 23834336958 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA697897|AA697897 HL03427.5prime HL Drosophila melanogaster head BlueScript Drosophila melanogaster cDNA clone HL03427 5prime similar to M21017: D.melanogaster 18S, 5.8S 2S and 28S rRNA genes, complete, and 18S rRNA gene, 5' end, clone pDm238, mRNA sequence. (718 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,876 Number of Sequences: 18737 Number of extensions: 12876 Number of successful extensions: 218 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 218 Number of HSP's gapped (non-prelim): 0 length of query: 718 length of database: 41,270,998 effective HSP length: 17 effective length of query: 701 effective length of database: 40,952,469 effective search space: 28707680769 effective search space used: 28707680769 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA699178|AA699178 HL07869.5prime HL Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone HL07869 5 similar to CG1583: FBan0001583 'phospholipase A2' located on: X 7D14-7D14;: 04/10/2001, mRNA sequence. (449 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG1583-RA feature: mRNA loc=X:join(7896493..7897332,7897511..789... 559 e-159 >CG1583-RA feature: mRNA loc=X:join(7896493..7897332, 7897511..7897985);ID=FBan0001583;gene_id=FBgn0030013;gene _sym=CG1583;sym=CG1583;scaffold=AE003443;len=1315 Length = 1315 Score = 559 bits (282), Expect = e-159 Identities = 282/282 (100%) Strand = Plus / Plus Query: 1 aaggccgagaccgtttgcgttcagcggggcggctccggaaaggagaccgatccgtgcctc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 721 aaggccgagaccgtttgcgttcagcggggcggctccggaaaggagaccgatccgtgcctc 780 Query: 61 aaggaggaggtgcgtcacaaggccttcctgcgcgacaacaagcggttctaagagacctag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 781 aaggaggaggtgcgtcacaaggccttcctgcgcgacaacaagcggttctaagagacctag 840 Query: 121 ttggcccacgacgaccggcaggaatttgtgtatcccaaagtcgcctgcccgcaaaaggag 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 841 ttggcccacgacgaccggcaggaatttgtgtatcccaaagtcgcctgcccgcaaaaggag 900 Query: 181 ctaaccaaacataccgccacatagtgctgcaattgggtttgaaactcaatgggagagcat 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 901 ctaaccaaacataccgccacatagtgctgcaattgggtttgaaactcaatgggagagcat 960 Query: 241 ggcaaaacaccatcatcatccgtacttagatgaacagattgt 282 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 961 ggcaaaacaccatcatcatccgtacttagatgaacagattgt 1002 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8516 Number of Sequences: 18737 Number of extensions: 8516 Number of successful extensions: 710 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 708 Number of HSP's gapped (non-prelim): 2 length of query: 449 length of database: 41,270,998 effective HSP length: 17 effective length of query: 432 effective length of database: 40,952,469 effective search space: 17691466608 effective search space used: 17691466608 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA735228|AA735228 LD01639.5prime LD Drosophila melanogaster embryo BlueScript Drosophila melanogaster cDNA clone LD01639 5prime, mRNA sequence. (510 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG9328-RB feature: mRNA loc=2L:join(20767473..20768256,20782898.... 842 0.0 >CG9328-RB feature: mRNA loc=2L:join(20767473..20768256,20782898..20783099, 20783175..20783792);ID=FBan0009328;gene_id=FBgn0032886;g ene_sym=CG9328;sym=CG9328;scaffold=AE003668;len=1604 Length = 1604 Score = 842 bits (425), Expect = 0.0 Identities = 439/446 (98%) Strand = Plus / Plus Query: 2 agcgtgcgcgtacggtgctttcctcgcatgaagagtaaaaacaaattaaataccactgtg 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 agcgtgcgcgtacggtgctttcctcgcatgaagagtaaaaacaaattaaataccactgtg 60 Query: 62 gaataacatctcagcgaacgagtatacgtcggaaaccgatttgtcgcgctaagtaacacg 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gaataacatctcagcgaacgagtatacgtcggaaaccgatttgtcgcgctaagtaacacg 120 Query: 122 agatgcttttgggattcnnnnnnncccatatttatgtgatgatatattaatgtaaaccca 181 ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 121 agatgcttttgggattcaaaaaaacccatatttatgtgatgatatattaatgtaaaccca 180 Query: 182 ctgtttcgtttacattttcgtttttgaatgactggctgcggaaataactatagattcgcg 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 ctgtttcgtttacattttcgtttttgaatgactggctgcggaaataactatagattcgcg 240 Query: 242 aaagtacactaaatcaggcagtaaaatcggattggcaatcttgggaaaaaatcgaaggaa 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 aaagtacactaaatcaggcagtaaaatcggattggcaatcttgggaaaaaatcgaaggaa 300 Query: 302 aagagacgccagcagcttcctcggattgttttgttgttttcagttcgttagtgtgtggcc 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 aagagacgccagcagcttcctcggattgttttgttgttttcagttcgttagtgtgtggcc 360 Query: 362 gtttttccgcctgtgtttgtgcaacaaagtcaaagtcgtcgaagctgctgcaaaaatacg 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 gtttttccgcctgtgtttgtgcaacaaagtcaaagtcgtcgaagctgctgcaaaaatacg 420 Query: 422 tgaaatgcaaattgtgaaaaagttgc 447 |||||||||||||||||||||||||| Sbjct: 421 tgaaatgcaaattgtgaaaaagttgc 446 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,321 Number of Sequences: 18737 Number of extensions: 11321 Number of successful extensions: 259 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 256 Number of HSP's gapped (non-prelim): 2 length of query: 510 length of database: 41,270,998 effective HSP length: 17 effective length of query: 493 effective length of database: 40,952,469 effective search space: 20189567217 effective search space used: 20189567217 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA802741|AA802741 GM06241.5prime GM Drosophila melanogaster ovary BlueScript Drosophila melanogaster cDNA clone GM06241 5prime, mRNA sequence. (521 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG3800-RA feature: mRNA loc=2R:complement(17978141..17980498);ID... 930 0.0 >CG3800-RA feature: mRNA loc=2R:complement(17978141..17980498);ID=FBan0003800;gene _id=FBgn0034802;gene_sym=CG3800;sym=CG3800;scaffold=AE003 459;len=2358 Length = 2358 Score = 930 bits (469), Expect = 0.0 Identities = 472/473 (99%) Strand = Plus / Plus Query: 29 gcagctgtgcagccgagagagcagatgacaccgacgacgaggaagaggatgaggtagaag 88 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1401 gcagctgtgcagccgagagagcagatgacaccgacgacgaggaagaggatgaggtagaag 1460 Query: 89 atgaggaagaagacacgacgacccaatttgtaagatgagactaaaccacaacagcaacaa 148 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1461 atgaggaagaagacacgacgacccaatttgtaagatgagactaaaccacaacagcaacaa 1520 Query: 149 caaaagaaatcaccaagcaaaccactctactataattatacctatatgattatatgatta 208 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1521 caaaagaaatcaccaagcaaaccactctactataattatacctatatgattatatgatta 1580 Query: 209 tgctgcaagtgtttgaatttactaattacattataacgaatggaatgaaactatataaga 268 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1581 tgctgcaagtgtttgaatttactaattacattataacgaatggaatgaaactatataaga 1640 Query: 269 ttatataaagaaaaataccttaaagaatactatttaaagcaaatgatcctattaggagtt 328 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1641 ttatataaagaaaaataccttaaagaatactatttaaagcaaatgatcctattaggagtt 1700 Query: 329 ccacagccagaaacaaccgaaagaaaaacgtaaataagaattataaaaaccaatgaaaaa 388 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1701 ccacagccagaaacaaccgaaagaaaaacgtaaataaaaattataaaaaccaatgaaaaa 1760 Query: 389 gcgaagaatcaggcggctagaagatcaggccacgttaccactcgactccactcaactcca 448 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1761 gcgaagaatcaggcggctagaagatcaggccacgttaccactcgactccactcaactcca 1820 Query: 449 ctccatccagctgctgccggcgagccttgggaattatccaggatctaagactg 501 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1821 ctccatccagctgctgccggcgagccttgggaattatccaggatctaagactg 1873 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 19,053 Number of Sequences: 18737 Number of extensions: 19053 Number of successful extensions: 1070 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 1066 Number of HSP's gapped (non-prelim): 4 length of query: 521 length of database: 41,270,998 effective HSP length: 17 effective length of query: 504 effective length of database: 40,952,469 effective search space: 20640044376 effective search space used: 20640044376 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AA821174|AA821174 GM14784.5prime GM Drosophila melanogaster ovary pOT2 Drosophila melanogaster cDNA clone GM14784 5 similar to CG2803: FBan0002803 'ligand binding or carrier' located on: 2R 60E5-60E5;: 04/10/2001, mRNA sequence. (585 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Tina-1-RA feature: mRNA loc=2R:complement(19984192..19984624,199... 1144 0.0 >Tina-1-RA feature: mRNA loc=2R:complement(19984192..19984624,19984692..19985011, 19985820..19985979);ID=FBan0002803;gene_id=FBgn0035083;g ene_sym=Tina-1;sym=CG2803;scaffold=AE003465;len=913 Length = 913 Score = 1144 bits (577), Expect = 0.0 Identities = 583/585 (99%) Strand = Plus / Plus Query: 1 cgcggttgtatctctgctggagctcgtgcgcactatcctatccaatcccgaagagctctc 60 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 25 cgcggttgtatctctgctggagctcgtgcacactatcctatccaatcccgaagagctctc 84 Query: 61 tcgcctttgcttagtgcagcaatttgcaattttaattatctgcaggcggttcgacaagaa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 85 tcgcctttgcttagtgcagcaatttgcaattttaattatctgcaggcggttcgacaagaa 144 Query: 121 aatgggccaagcaaagaaagtctcctccgccttgagcaagctcttcgtgtacggcgccct 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 145 aatgggccaagcaaagaaagtctcctccgccttgagcaagctcttcgtgtacggcgccct 204 Query: 181 caagtacggacagcccagcaactcaatcctggccagctctggcaacggcttcgctaagtt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 205 caagtacggacagcccagcaactcaatcctggccagctctggcaacggcttcgctaagtt 264 Query: 241 ctggtgcaaggcgaccaccacccaaaagctgccgctagtgatcgccacccgctacaacat 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 265 ctggtgcaaggcgaccaccacccaaaagctgccgctagtgatcgccacccgctacaacat 324 Query: 301 tcccttcctgctgaacaagcccggagtgggatattacgtaacaggggagatctacgaggt 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 325 tcccttcctgctgaacaagcccggagtgggatattacgtaacaggggagatctacgaggt 384 Query: 361 ggacgatcgaatgctgaattccctggacaacctggaggattgcgaggagatctacactcg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 385 ggacgatcgaatgctgaattccctggacaacctggaggattgcgaggagatctacactcg 444 Query: 421 cgagatgcacgatatgaacattggcgttggagaaggaaccgttccatgctgggtgtacct 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 445 cgagatgcacgatatgaacattggcgttggagaaggaaccgttccatgctgggtgtacct 504 Query: 481 gctgcagaagtacccggagaacctacttagtctgcgctacttgtccagctacgagaactc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 505 gctgcagaagtacccggagaacctacttagtctgcgctacttgtccagctacgagaactc 564 Query: 541 aaccacccatccatacattatgcgccatcgccggacccacaagca 585 ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 565 aaccacccatccatacattatgcgccatcgccgcacccacaagca 609 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,706 Number of Sequences: 18737 Number of extensions: 14706 Number of successful extensions: 320 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 319 Number of HSP's gapped (non-prelim): 1 length of query: 585 length of database: 41,270,998 effective HSP length: 17 effective length of query: 568 effective length of database: 40,952,469 effective search space: 23261002392 effective search space used: 23261002392 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI294235|AI294235 LP07557.5prime LP Drosophila melanogaster larval-early pupal pOT2 Drosophila melanogaster cDNA clone LP07557 5, mRNA sequence. (705 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31997-RA feature: mRNA loc=4:complement(174959..175215,175277.... 1275 0.0 >CG31997-RA feature: mRNA loc=4:complement(174959..175215,175277..175397, 176015..176302);ID=FBan0031997;gene_id=FBgn0051997;gene_ sym=CG31997;sym=CG31997;scaffold=AE003844;len=666 Length = 666 Score = 1275 bits (643), Expect = 0.0 Identities = 643/643 (100%) Strand = Plus / Plus Query: 1 cttcatttaggctggttaggtggttaattccatttgtcttcgttcttttgtattattttt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 16 cttcatttaggctggttaggtggttaattccatttgtcttcgttcttttgtattattttt 75 Query: 61 acaaagcgataatattttaatcgtttatgattattacaatataacaaaaagttaacatct 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 76 acaaagcgataatattttaatcgtttatgattattacaatataacaaaaagttaacatct 135 Query: 121 ttggaatcttaaaaatgagttttcattttgctgtactgacccttattttaacagccttca 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 136 ttggaatcttaaaaatgagttttcattttgctgtactgacccttattttaacagccttca 195 Query: 181 cagtttctctgtgtgctgaacaaaaaattacaaagagtgacgcaggtgaaatacgaattt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 196 cagtttctctgtgtgctgaacaaaaaattacaaagagtgacgcaggtgaaatacgaattt 255 Query: 241 tcaaacgtcttattcctgccgatgttctacgagattttccgggaatgtgctttgcttcaa 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 256 tcaaacgtcttattcctgccgatgttctacgagattttccgggaatgtgctttgcttcaa 315 Query: 301 ctcgatgtgccactgttgagcctggaaagtcgtgggaccttactccattctgcggtcgat 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 316 ctcgatgtgccactgttgagcctggaaagtcgtgggaccttactccattctgcggtcgat 375 Query: 361 ctacttgtgttcaaaatgaggaaaatgatgcaaagctattcgaactcgtagaagactgcg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 376 ctacttgtgttcaaaatgaggaaaatgatgcaaagctattcgaactcgtagaagactgcg 435 Query: 421 gcccattgccactggcgaatgacaaatgtaaattggacacagagaagactaataaaaccg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 436 gcccattgccactggcgaatgacaaatgtaaattggacacagagaagactaataaaaccg 495 Query: 481 catcgtttccttattgctgccccatctttacatgtgaccccggtgttaaattggaatacc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 496 catcgtttccttattgctgccccatctttacatgtgaccccggtgttaaattggaatacc 555 Query: 541 ccgagatcggaaaggataatgacaaaaagaattctgagtgattcaaaacaaatatattat 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 556 ccgagatcggaaaggataatgacaaaaagaattctgagtgattcaaaacaaatatattat 615 Query: 601 gaaaacgtctgtcaatacaataaaaacatttgttgctttagtc 643 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 616 gaaaacgtctgtcaatacaataaaaacatttgttgctttagtc 658 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,326 Number of Sequences: 18737 Number of extensions: 14326 Number of successful extensions: 327 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 326 Number of HSP's gapped (non-prelim): 1 length of query: 705 length of database: 41,270,998 effective HSP length: 17 effective length of query: 688 effective length of database: 40,952,469 effective search space: 28175298672 effective search space used: 28175298672 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI388468|AI388468 GH19401.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH19401 5prime, mRNA sequence. (600 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value BEST:LD22483-RA feature: mRNA loc=2L:join(9996220..9996535,99969... 1086 0.0 >BEST:LD22483-RA feature: mRNA loc=2L:join(9996220..9996535,9996944..9996980, 9997833..9997915,9997977..9998826,9998884..9998994, 9999317..9999587,9999664..9999750,9999823..9999912, 9999976..10000350);ID=FBan0004747;gene_id=FBgn0043456;ge ne_sym=BEST:LD22483;sym=CG4747;scaffold=AE003627;len=222 0 Length = 2220 Score = 1086 bits (548), Expect = 0.0 Identities = 554/556 (99%) Strand = Plus / Plus Query: 45 tacgggtggcctgcaagcgaatatctgcgaaattcattgaatcccgacgccgagatttgt 104 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 89 tacgggtggcctgcaagcgaatatctccgaaattcattgaatcccgacgccgagatttgt 148 Query: 105 gttccgatccgagaaacccattagcttccgtgcaccgtccgcccaagccagcaaaataac 164 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 149 gctccgatccgagaaacccattagcttccgtgcaccgtccgcccaagccagcaaaataac 208 Query: 165 caagttcaacatacgcctggacaacataatgtcgaagaataaaaaactgtcgctgtcggg 224 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 209 caagttcaacatacgcctggacaacataatgtcgaagaataaaaaactgtcgctgtcggg 268 Query: 225 cggcgatacgacggagaaatttatttacaaacccaaggatctgatatgggccaaaatgaa 284 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 269 cggcgatacgacggagaaatttatttacaaacccaaggatctgatatgggccaaaatgaa 328 Query: 285 gggcttcactccgtggccaggaatgattgtcgatcctccacttgatctgctcagccagca 344 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 329 gggcttcactccgtggccaggaatgattgtcgatcctccacttgatctgctcagccagca 388 Query: 345 gcgtcgggcgaataccaaatgcgtgtttttctttggatctaggaattttgcctggattga 404 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 389 gcgtcgggcgaataccaaatgcgtgtttttctttggatctaggaattttgcctggattga 448 Query: 405 ggagaacaacatcaagcccttcgaaggaccgtggaaggaggaactggccaaggtgagcaa 464 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 449 ggagaacaacatcaagcccttcgaaggaccgtggaaggaggaactggccaaggtgagcaa 508 Query: 465 gcccgctgctttccgacacgccatgacggatatcgaaaagtacatcgacgaccccgccga 524 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 509 gcccgctgctttccgacacgccatgacggatatcgaaaagtacatcgacgaccccgccga 568 Query: 525 ggtggacgagcaggtgaacaaaagctgcggtgcgccgaatcacgcaaccgaggctgattt 584 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 569 ggtggacgagcaggtgaacaaaagctgcggtgcgccgaatcacgcaaccgaggctgattt 628 Query: 585 tgacaagatccgggat 600 |||||||||||||||| Sbjct: 629 tgacaagatccgggat 644 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,876 Number of Sequences: 18737 Number of extensions: 15876 Number of successful extensions: 423 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 421 Number of HSP's gapped (non-prelim): 2 length of query: 600 length of database: 41,270,998 effective HSP length: 17 effective length of query: 583 effective length of database: 40,952,469 effective search space: 23875289427 effective search space used: 23875289427 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI388507|AI388507 GH19447.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH19447 5 similar to GRHR: FBan0011325 'G protein linked receptor' located on: 2L 27A1-27A1;: 04/10/2001, mRNA sequence. (664 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value GRHR-RC feature: mRNA loc=2L:complement(6703498..6703958,6704563... 1316 0.0 GRHR-RB feature: mRNA loc=2L:complement(6703508..6704891,6704956... 1316 0.0 GRHR-RA feature: mRNA loc=2L:complement(6703498..6703958,6704554... 1316 0.0 >GRHR-RC feature: mRNA loc=2L:complement(6703498..6703958,6704563..6704891, 6704956..6705444,6705582..6705681,6705791..6706063, 6706771..6706983, 6708242..6708399);ID=FBan0011325;gene_id=FBgn0025595;gen e_sym=GRHR;sym=CG11325;scaffold=AE003614;len=2023 Length = 2023 Score = 1316 bits (664), Expect = 0.0 Identities = 664/664 (100%) Strand = Plus / Plus Query: 1 tcgatcggtgtgagtgtggatctggagtaccgttagtcgtagtcgtgtgtgccgttaaga 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18 tcgatcggtgtgagtgtggatctggagtaccgttagtcgtagtcgtgtgtgccgttaaga 77 Query: 61 agctctcgcatcgtcgatagcgataactacgcgcgtgggcggtgggcagtgtgaacggtg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 78 agctctcgcatcgtcgatagcgataactacgcgcgtgggcggtgggcagtgtgaacggtg 137 Query: 121 tattttcgtcgctgctgggagaataaaagacgttatctttgaggcaaatccttgatgcag 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 138 tattttcgtcgctgctgggagaataaaagacgttatctttgaggcaaatccttgatgcag 197 Query: 181 ttgcattcagatacaatttattagcttgtcccaaaaaatggcaaaagtagctgaggagaa 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 198 ttgcattcagatacaatttattagcttgtcccaaaaaatggcaaaagtagctgaggagaa 257 Query: 241 tgatcatcgtgatctaagtaattggtcgaatgtgaacgacaccaatggcaccattcacct 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 258 tgatcatcgtgatctaagtaattggtcgaatgtgaacgacaccaatggcaccattcacct 317 Query: 301 gaccaaggatatggtcttcaatgatggccaccgattgtccatcaccgtgtacagcatact 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 318 gaccaaggatatggtcttcaatgatggccaccgattgtccatcaccgtgtacagcatact 377 Query: 361 gtttgtgatctcaacaattggcaacagcaccgtgctgtatctgctgaccaagcggcgact 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 378 gtttgtgatctcaacaattggcaacagcaccgtgctgtatctgctgaccaagcggcgact 437 Query: 421 gcgcggtcccttgcgtattgatatcatgctaatgcatctggccatcgccgatctaatggt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 438 gcgcggtcccttgcgtattgatatcatgctaatgcatctggccatcgccgatctaatggt 497 Query: 481 gacgctgctcctgatgccaatggagatcgtgtgggcctggacggtgcagtggctatccac 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 498 gacgctgctcctgatgccaatggagatcgtgtgggcctggacggtgcagtggctatccac 557 Query: 541 ggacctgatgtgccgcctgatgagctttttccgcgtctttggcctgtatctgtccagcta 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 558 ggacctgatgtgccgcctgatgagctttttccgcgtctttggcctgtatctgtccagcta 617 Query: 601 cgtgatggtctgcatatcgctcgacagatactttgccatactgaagccgctcaagcggtc 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 618 cgtgatggtctgcatatcgctcgacagatactttgccatactgaagccgctcaagcggtc 677 Query: 661 ctac 664 |||| Sbjct: 678 ctac 681 >GRHR-RB feature: mRNA loc=2L:complement(6703508..6704891,6704956..6705444, 6705582..6705681,6705791..6706063,6706771..6706983, 6708242..6708399);ID=FBan0011325;gene_id=FBgn0025595;gen e_sym=GRHR;sym=CG11325;scaffold=AE003614;len=2617 Length = 2617 Score = 1316 bits (664), Expect = 0.0 Identities = 664/664 (100%) Strand = Plus / Plus Query: 1 tcgatcggtgtgagtgtggatctggagtaccgttagtcgtagtcgtgtgtgccgttaaga 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18 tcgatcggtgtgagtgtggatctggagtaccgttagtcgtagtcgtgtgtgccgttaaga 77 Query: 61 agctctcgcatcgtcgatagcgataactacgcgcgtgggcggtgggcagtgtgaacggtg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 78 agctctcgcatcgtcgatagcgataactacgcgcgtgggcggtgggcagtgtgaacggtg 137 Query: 121 tattttcgtcgctgctgggagaataaaagacgttatctttgaggcaaatccttgatgcag 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 138 tattttcgtcgctgctgggagaataaaagacgttatctttgaggcaaatccttgatgcag 197 Query: 181 ttgcattcagatacaatttattagcttgtcccaaaaaatggcaaaagtagctgaggagaa 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 198 ttgcattcagatacaatttattagcttgtcccaaaaaatggcaaaagtagctgaggagaa 257 Query: 241 tgatcatcgtgatctaagtaattggtcgaatgtgaacgacaccaatggcaccattcacct 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 258 tgatcatcgtgatctaagtaattggtcgaatgtgaacgacaccaatggcaccattcacct 317 Query: 301 gaccaaggatatggtcttcaatgatggccaccgattgtccatcaccgtgtacagcatact 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 318 gaccaaggatatggtcttcaatgatggccaccgattgtccatcaccgtgtacagcatact 377 Query: 361 gtttgtgatctcaacaattggcaacagcaccgtgctgtatctgctgaccaagcggcgact 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 378 gtttgtgatctcaacaattggcaacagcaccgtgctgtatctgctgaccaagcggcgact 437 Query: 421 gcgcggtcccttgcgtattgatatcatgctaatgcatctggccatcgccgatctaatggt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 438 gcgcggtcccttgcgtattgatatcatgctaatgcatctggccatcgccgatctaatggt 497 Query: 481 gacgctgctcctgatgccaatggagatcgtgtgggcctggacggtgcagtggctatccac 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 498 gacgctgctcctgatgccaatggagatcgtgtgggcctggacggtgcagtggctatccac 557 Query: 541 ggacctgatgtgccgcctgatgagctttttccgcgtctttggcctgtatctgtccagcta 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 558 ggacctgatgtgccgcctgatgagctttttccgcgtctttggcctgtatctgtccagcta 617 Query: 601 cgtgatggtctgcatatcgctcgacagatactttgccatactgaagccgctcaagcggtc 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 618 cgtgatggtctgcatatcgctcgacagatactttgccatactgaagccgctcaagcggtc 677 Query: 661 ctac 664 |||| Sbjct: 678 ctac 681 >GRHR-RA feature: mRNA loc=2L:complement(6703498..6703958,6704554..6704891, 6704956..6705444,6705582..6705681,6705791..6706063, 6706771..6706983, 6708242..6708399);ID=FBan0011325;gene_id=FBgn0025595;gen e_sym=GRHR;sym=CG11325;scaffold=AE003614;len=2032 Length = 2032 Score = 1316 bits (664), Expect = 0.0 Identities = 664/664 (100%) Strand = Plus / Plus Query: 1 tcgatcggtgtgagtgtggatctggagtaccgttagtcgtagtcgtgtgtgccgttaaga 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18 tcgatcggtgtgagtgtggatctggagtaccgttagtcgtagtcgtgtgtgccgttaaga 77 Query: 61 agctctcgcatcgtcgatagcgataactacgcgcgtgggcggtgggcagtgtgaacggtg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 78 agctctcgcatcgtcgatagcgataactacgcgcgtgggcggtgggcagtgtgaacggtg 137 Query: 121 tattttcgtcgctgctgggagaataaaagacgttatctttgaggcaaatccttgatgcag 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 138 tattttcgtcgctgctgggagaataaaagacgttatctttgaggcaaatccttgatgcag 197 Query: 181 ttgcattcagatacaatttattagcttgtcccaaaaaatggcaaaagtagctgaggagaa 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 198 ttgcattcagatacaatttattagcttgtcccaaaaaatggcaaaagtagctgaggagaa 257 Query: 241 tgatcatcgtgatctaagtaattggtcgaatgtgaacgacaccaatggcaccattcacct 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 258 tgatcatcgtgatctaagtaattggtcgaatgtgaacgacaccaatggcaccattcacct 317 Query: 301 gaccaaggatatggtcttcaatgatggccaccgattgtccatcaccgtgtacagcatact 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 318 gaccaaggatatggtcttcaatgatggccaccgattgtccatcaccgtgtacagcatact 377 Query: 361 gtttgtgatctcaacaattggcaacagcaccgtgctgtatctgctgaccaagcggcgact 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 378 gtttgtgatctcaacaattggcaacagcaccgtgctgtatctgctgaccaagcggcgact 437 Query: 421 gcgcggtcccttgcgtattgatatcatgctaatgcatctggccatcgccgatctaatggt 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 438 gcgcggtcccttgcgtattgatatcatgctaatgcatctggccatcgccgatctaatggt 497 Query: 481 gacgctgctcctgatgccaatggagatcgtgtgggcctggacggtgcagtggctatccac 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 498 gacgctgctcctgatgccaatggagatcgtgtgggcctggacggtgcagtggctatccac 557 Query: 541 ggacctgatgtgccgcctgatgagctttttccgcgtctttggcctgtatctgtccagcta 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 558 ggacctgatgtgccgcctgatgagctttttccgcgtctttggcctgtatctgtccagcta 617 Query: 601 cgtgatggtctgcatatcgctcgacagatactttgccatactgaagccgctcaagcggtc 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 618 cgtgatggtctgcatatcgctcgacagatactttgccatactgaagccgctcaagcggtc 677 Query: 661 ctac 664 |||| Sbjct: 678 ctac 681 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,448 Number of Sequences: 18737 Number of extensions: 16448 Number of successful extensions: 369 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 366 Number of HSP's gapped (non-prelim): 3 length of query: 664 length of database: 41,270,998 effective HSP length: 17 effective length of query: 647 effective length of database: 40,952,469 effective search space: 26496247443 effective search space used: 26496247443 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI388523|AI388523 GH19464.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH19464 3prime, mRNA sequence. (545 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG32332-RE feature: mRNA loc=3L:join(1232641..1233861,1233933..1... 490 e-138 CG32332-RD feature: mRNA loc=3L:join(1232641..1233861,1233933..1... 490 e-138 CG32332-RC feature: mRNA loc=3L:join(1232641..1233861,1233933..1... 490 e-138 CG32332-RB feature: mRNA loc=3L:join(1232641..1233861,1233933..1... 490 e-138 CG32332-RA feature: mRNA loc=3L:join(1234482..1234622,1234705..1... 490 e-138 >CG32332-RE feature: mRNA loc=3L:join(1232641..1233861,1233933..1234352, 1234705..1235673, 1236117..1236617);ID=FBan0032332;gene_id=FBgn0052332;gene _sym=CG32332;sym=CG32332;scaffold=AE003471;len=3111 Length = 3111 Score = 490 bits (247), Expect = e-138 Identities = 247/247 (100%) Strand = Plus / Minus Query: 299 accggttagcatctcctcggaaacataggtctccgtggtcaccttgctgatcggaagggt 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2796 accggttagcatctcctcggaaacataggtctccgtggtcaccttgctgatcggaagggt 2737 Query: 359 tacgggctgcttgggcgtccgcagctcgatctcgatggtattcttcttgtgctgcgactt 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2736 tacgggctgcttgggcgtccgcagctcgatctcgatggtattcttcttgtgctgcgactt 2677 Query: 419 ggccttacttcccagttttactaggaacacgtcgctgtcggtctcctcgcaggtcttgta 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2676 ggccttacttcccagttttactaggaacacgtcgctgtcggtctcctcgcaggtcttgta 2617 Query: 479 gcaaacctcgatacccttgcgccttgtgtccaaattgacacccttcatggtgtccatgat 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2616 gcaaacctcgatacccttgcgccttgtgtccaaattgacacccttcatggtgtccatgat 2557 Query: 539 gtccttc 545 ||||||| Sbjct: 2556 gtccttc 2550 Score = 466 bits (235), Expect = e-131 Identities = 235/235 (100%) Strand = Plus / Minus Query: 1 cttaattttaattcaatcaaaagcatacatttacgtaactagtcgaaaaagtgagtgttc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3094 cttaattttaattcaatcaaaagcatacatttacgtaactagtcgaaaaagtgagtgttc 3035 Query: 61 gtgcatcttactggacgggttaatatgaatgggttagtaccagagccaaatttcaataat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3034 gtgcatcttactggacgggttaatatgaatgggttagtaccagagccaaatttcaataat 2975 Query: 121 tgctgctgtgaattttcaaagagtcgcttccaaaatgccaaaggatgtgttccgaaaggg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2974 tgctgctgtgaattttcaaagagtcgcttccaaaatgccaaaggatgtgttccgaaaggg 2915 Query: 181 taagcgtcaagtccggtcgatgggaatgggatccgcctacggatctcttggtcta 235 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2914 taagcgtcaagtccggtcgatgggaatgggatccgcctacggatctcttggtcta 2860 >CG32332-RD feature: mRNA loc=3L:join(1232641..1233861,1233933..1234352, 1234705..1235673, 1236117..1236617);ID=FBan0032332;gene_id=FBgn0052332;gene _sym=CG32332;sym=CG32332;scaffold=AE003471;len=3111 Length = 3111 Score = 490 bits (247), Expect = e-138 Identities = 247/247 (100%) Strand = Plus / Minus Query: 299 accggttagcatctcctcggaaacataggtctccgtggtcaccttgctgatcggaagggt 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2796 accggttagcatctcctcggaaacataggtctccgtggtcaccttgctgatcggaagggt 2737 Query: 359 tacgggctgcttgggcgtccgcagctcgatctcgatggtattcttcttgtgctgcgactt 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2736 tacgggctgcttgggcgtccgcagctcgatctcgatggtattcttcttgtgctgcgactt 2677 Query: 419 ggccttacttcccagttttactaggaacacgtcgctgtcggtctcctcgcaggtcttgta 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2676 ggccttacttcccagttttactaggaacacgtcgctgtcggtctcctcgcaggtcttgta 2617 Query: 479 gcaaacctcgatacccttgcgccttgtgtccaaattgacacccttcatggtgtccatgat 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2616 gcaaacctcgatacccttgcgccttgtgtccaaattgacacccttcatggtgtccatgat 2557 Query: 539 gtccttc 545 ||||||| Sbjct: 2556 gtccttc 2550 Score = 466 bits (235), Expect = e-131 Identities = 235/235 (100%) Strand = Plus / Minus Query: 1 cttaattttaattcaatcaaaagcatacatttacgtaactagtcgaaaaagtgagtgttc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3094 cttaattttaattcaatcaaaagcatacatttacgtaactagtcgaaaaagtgagtgttc 3035 Query: 61 gtgcatcttactggacgggttaatatgaatgggttagtaccagagccaaatttcaataat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3034 gtgcatcttactggacgggttaatatgaatgggttagtaccagagccaaatttcaataat 2975 Query: 121 tgctgctgtgaattttcaaagagtcgcttccaaaatgccaaaggatgtgttccgaaaggg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2974 tgctgctgtgaattttcaaagagtcgcttccaaaatgccaaaggatgtgttccgaaaggg 2915 Query: 181 taagcgtcaagtccggtcgatgggaatgggatccgcctacggatctcttggtcta 235 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2914 taagcgtcaagtccggtcgatgggaatgggatccgcctacggatctcttggtcta 2860 >CG32332-RC feature: mRNA loc=3L:join(1232641..1233861,1233933..1234352, 1234705..1234953,1235027..1235673, 1236117..1236617);ID=FBan0032332;gene_id=FBgn0052332;gene _sym=CG32332;sym=CG32332;scaffold=AE003471;len=3038 Length = 3038 Score = 490 bits (247), Expect = e-138 Identities = 247/247 (100%) Strand = Plus / Minus Query: 299 accggttagcatctcctcggaaacataggtctccgtggtcaccttgctgatcggaagggt 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2723 accggttagcatctcctcggaaacataggtctccgtggtcaccttgctgatcggaagggt 2664 Query: 359 tacgggctgcttgggcgtccgcagctcgatctcgatggtattcttcttgtgctgcgactt 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2663 tacgggctgcttgggcgtccgcagctcgatctcgatggtattcttcttgtgctgcgactt 2604 Query: 419 ggccttacttcccagttttactaggaacacgtcgctgtcggtctcctcgcaggtcttgta 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2603 ggccttacttcccagttttactaggaacacgtcgctgtcggtctcctcgcaggtcttgta 2544 Query: 479 gcaaacctcgatacccttgcgccttgtgtccaaattgacacccttcatggtgtccatgat 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2543 gcaaacctcgatacccttgcgccttgtgtccaaattgacacccttcatggtgtccatgat 2484 Query: 539 gtccttc 545 ||||||| Sbjct: 2483 gtccttc 2477 Score = 466 bits (235), Expect = e-131 Identities = 235/235 (100%) Strand = Plus / Minus Query: 1 cttaattttaattcaatcaaaagcatacatttacgtaactagtcgaaaaagtgagtgttc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3021 cttaattttaattcaatcaaaagcatacatttacgtaactagtcgaaaaagtgagtgttc 2962 Query: 61 gtgcatcttactggacgggttaatatgaatgggttagtaccagagccaaatttcaataat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2961 gtgcatcttactggacgggttaatatgaatgggttagtaccagagccaaatttcaataat 2902 Query: 121 tgctgctgtgaattttcaaagagtcgcttccaaaatgccaaaggatgtgttccgaaaggg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2901 tgctgctgtgaattttcaaagagtcgcttccaaaatgccaaaggatgtgttccgaaaggg 2842 Query: 181 taagcgtcaagtccggtcgatgggaatgggatccgcctacggatctcttggtcta 235 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2841 taagcgtcaagtccggtcgatgggaatgggatccgcctacggatctcttggtcta 2787 >CG32332-RB feature: mRNA loc=3L:join(1232641..1233861,1233933..1234352, 1234705..1234953,1235027..1235673, 1236117..1236617);ID=FBan0032332;gene_id=FBgn0052332;gene _sym=CG32332;sym=CG32332;scaffold=AE003471;len=3038 Length = 3038 Score = 490 bits (247), Expect = e-138 Identities = 247/247 (100%) Strand = Plus / Minus Query: 299 accggttagcatctcctcggaaacataggtctccgtggtcaccttgctgatcggaagggt 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2723 accggttagcatctcctcggaaacataggtctccgtggtcaccttgctgatcggaagggt 2664 Query: 359 tacgggctgcttgggcgtccgcagctcgatctcgatggtattcttcttgtgctgcgactt 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2663 tacgggctgcttgggcgtccgcagctcgatctcgatggtattcttcttgtgctgcgactt 2604 Query: 419 ggccttacttcccagttttactaggaacacgtcgctgtcggtctcctcgcaggtcttgta 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2603 ggccttacttcccagttttactaggaacacgtcgctgtcggtctcctcgcaggtcttgta 2544 Query: 479 gcaaacctcgatacccttgcgccttgtgtccaaattgacacccttcatggtgtccatgat 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2543 gcaaacctcgatacccttgcgccttgtgtccaaattgacacccttcatggtgtccatgat 2484 Query: 539 gtccttc 545 ||||||| Sbjct: 2483 gtccttc 2477 Score = 466 bits (235), Expect = e-131 Identities = 235/235 (100%) Strand = Plus / Minus Query: 1 cttaattttaattcaatcaaaagcatacatttacgtaactagtcgaaaaagtgagtgttc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3021 cttaattttaattcaatcaaaagcatacatttacgtaactagtcgaaaaagtgagtgttc 2962 Query: 61 gtgcatcttactggacgggttaatatgaatgggttagtaccagagccaaatttcaataat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2961 gtgcatcttactggacgggttaatatgaatgggttagtaccagagccaaatttcaataat 2902 Query: 121 tgctgctgtgaattttcaaagagtcgcttccaaaatgccaaaggatgtgttccgaaaggg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2901 tgctgctgtgaattttcaaagagtcgcttccaaaatgccaaaggatgtgttccgaaaggg 2842 Query: 181 taagcgtcaagtccggtcgatgggaatgggatccgcctacggatctcttggtcta 235 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2841 taagcgtcaagtccggtcgatgggaatgggatccgcctacggatctcttggtcta 2787 >CG32332-RA feature: mRNA loc=3L:join(1234482..1234622,1234705..1234953, 1235027..1235673, 1236117..1236617);ID=FBan0032332;gene_id=FBgn0052332;gene _sym=CG32332;sym=CG32332;scaffold=AE003471;len=1538 Length = 1538 Score = 490 bits (247), Expect = e-138 Identities = 247/247 (100%) Strand = Plus / Minus Query: 299 accggttagcatctcctcggaaacataggtctccgtggtcaccttgctgatcggaagggt 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1223 accggttagcatctcctcggaaacataggtctccgtggtcaccttgctgatcggaagggt 1164 Query: 359 tacgggctgcttgggcgtccgcagctcgatctcgatggtattcttcttgtgctgcgactt 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1163 tacgggctgcttgggcgtccgcagctcgatctcgatggtattcttcttgtgctgcgactt 1104 Query: 419 ggccttacttcccagttttactaggaacacgtcgctgtcggtctcctcgcaggtcttgta 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1103 ggccttacttcccagttttactaggaacacgtcgctgtcggtctcctcgcaggtcttgta 1044 Query: 479 gcaaacctcgatacccttgcgccttgtgtccaaattgacacccttcatggtgtccatgat 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1043 gcaaacctcgatacccttgcgccttgtgtccaaattgacacccttcatggtgtccatgat 984 Query: 539 gtccttc 545 ||||||| Sbjct: 983 gtccttc 977 Score = 466 bits (235), Expect = e-131 Identities = 235/235 (100%) Strand = Plus / Minus Query: 1 cttaattttaattcaatcaaaagcatacatttacgtaactagtcgaaaaagtgagtgttc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1521 cttaattttaattcaatcaaaagcatacatttacgtaactagtcgaaaaagtgagtgttc 1462 Query: 61 gtgcatcttactggacgggttaatatgaatgggttagtaccagagccaaatttcaataat 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1461 gtgcatcttactggacgggttaatatgaatgggttagtaccagagccaaatttcaataat 1402 Query: 121 tgctgctgtgaattttcaaagagtcgcttccaaaatgccaaaggatgtgttccgaaaggg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1401 tgctgctgtgaattttcaaagagtcgcttccaaaatgccaaaggatgtgttccgaaaggg 1342 Query: 181 taagcgtcaagtccggtcgatgggaatgggatccgcctacggatctcttggtcta 235 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1341 taagcgtcaagtccggtcgatgggaatgggatccgcctacggatctcttggtcta 1287 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,481 Number of Sequences: 18737 Number of extensions: 10481 Number of successful extensions: 267 Number of sequences better than 1.0e-100: 5 Number of HSP's better than 0.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 257 Number of HSP's gapped (non-prelim): 10 length of query: 545 length of database: 41,270,998 effective HSP length: 17 effective length of query: 528 effective length of database: 40,952,469 effective search space: 21622903632 effective search space used: 21622903632 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI388590|AI388590 GH19547.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH19547 3prime, mRNA sequence. (598 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG4847-RE feature: mRNA loc=2R:join(12575955..12575988,12576182.... 793 0.0 CG4847-RD feature: mRNA loc=2R:join(12575960..12576440,12576501.... 793 0.0 CG4847-RC feature: mRNA loc=2R:join(12575955..12575988,12576177.... 793 0.0 CG4847-RB feature: mRNA loc=2R:join(12576151..12576440,12576501.... 793 0.0 CG4847-RA feature: mRNA loc=2R:join(12575248..12575269,12576177.... 793 0.0 Pof-RA feature: mRNA loc=2R:join(19712984..19713415,19713470..19... 369 e-101 >CG4847-RE feature: mRNA loc=2R:join(12575955..12575988,12576182..12576440, 12576501..12576709, 12576775..12577584);ID=FBan0004847;gene_id=FBgn0034229;ge ne_sym=CG4847;sym=CG4847;scaffold=AE003803;len=1312 Length = 1312 Score = 793 bits (400), Expect = 0.0 Identities = 400/400 (100%) Strand = Plus / Minus Query: 1 ataattaagaaaagacttttatttaagaaatggacgcaaccaacgccaagtccacatcac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1310 ataattaagaaaagacttttatttaagaaatggacgcaaccaacgccaagtccacatcac 1251 Query: 61 aaactgcacagtaaattttgccataaatttcggattccccgcttaaaccacgggatagga 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1250 aaactgcacagtaaattttgccataaatttcggattccccgcttaaaccacgggatagga 1191 Query: 121 gcactcctcagcaatgaagcagtagtttttgccgcgaggcaggcggaagtagcccttttc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1190 gcactcctcagcaatgaagcagtagtttttgccgcgaggcaggcggaagtagcccttttc 1131 Query: 181 gccccaggtgtcgtcccaggagttcttgacgatccagtaatcctgtcctttctccgatcc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1130 gccccaggtgtcgtcccaggagttcttgacgatccagtaatcctgtcctttctccgatcc 1071 Query: 241 gtaaccgacgaccagaatggagtggttcggctcgcccttgttgcactcatcgtcgttata 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1070 gtaaccgacgaccagaatggagtggttcggctcgcccttgttgcactcatcgtcgttata 1011 Query: 301 gatgccaccggcgtagttcttaagagtctccaaaccattcaccgaacaggcaactggtcc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1010 gatgccaccggcgtagttcttaagagtctccaaaccattcaccgaacaggcaactggtcc 951 Query: 361 cagagtggccaccaccttcttcagctgctcctcgtccttg 400 |||||||||||||||||||||||||||||||||||||||| Sbjct: 950 cagagtggccaccaccttcttcagctgctcctcgtccttg 911 >CG4847-RD feature: mRNA loc=2R:join(12575960..12576440,12576501..12576709, 12576775..12577584);ID=FBan0004847;gene_id=FBgn0034229;ge ne_sym=CG4847;sym=CG4847;scaffold=AE003803;len=1500 Length = 1500 Score = 793 bits (400), Expect = 0.0 Identities = 400/400 (100%) Strand = Plus / Minus Query: 1 ataattaagaaaagacttttatttaagaaatggacgcaaccaacgccaagtccacatcac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1498 ataattaagaaaagacttttatttaagaaatggacgcaaccaacgccaagtccacatcac 1439 Query: 61 aaactgcacagtaaattttgccataaatttcggattccccgcttaaaccacgggatagga 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1438 aaactgcacagtaaattttgccataaatttcggattccccgcttaaaccacgggatagga 1379 Query: 121 gcactcctcagcaatgaagcagtagtttttgccgcgaggcaggcggaagtagcccttttc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1378 gcactcctcagcaatgaagcagtagtttttgccgcgaggcaggcggaagtagcccttttc 1319 Query: 181 gccccaggtgtcgtcccaggagttcttgacgatccagtaatcctgtcctttctccgatcc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1318 gccccaggtgtcgtcccaggagttcttgacgatccagtaatcctgtcctttctccgatcc 1259 Query: 241 gtaaccgacgaccagaatggagtggttcggctcgcccttgttgcactcatcgtcgttata 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1258 gtaaccgacgaccagaatggagtggttcggctcgcccttgttgcactcatcgtcgttata 1199 Query: 301 gatgccaccggcgtagttcttaagagtctccaaaccattcaccgaacaggcaactggtcc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1198 gatgccaccggcgtagttcttaagagtctccaaaccattcaccgaacaggcaactggtcc 1139 Query: 361 cagagtggccaccaccttcttcagctgctcctcgtccttg 400 |||||||||||||||||||||||||||||||||||||||| Sbjct: 1138 cagagtggccaccaccttcttcagctgctcctcgtccttg 1099 >CG4847-RC feature: mRNA loc=2R:join(12575955..12575988,12576177..12576440, 12576501..12576709, 12576775..12577584);ID=FBan0004847;gene_id=FBgn0034229;ge ne_sym=CG4847;sym=CG4847;scaffold=AE003803;len=1317 Length = 1317 Score = 793 bits (400), Expect = 0.0 Identities = 400/400 (100%) Strand = Plus / Minus Query: 1 ataattaagaaaagacttttatttaagaaatggacgcaaccaacgccaagtccacatcac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1315 ataattaagaaaagacttttatttaagaaatggacgcaaccaacgccaagtccacatcac 1256 Query: 61 aaactgcacagtaaattttgccataaatttcggattccccgcttaaaccacgggatagga 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1255 aaactgcacagtaaattttgccataaatttcggattccccgcttaaaccacgggatagga 1196 Query: 121 gcactcctcagcaatgaagcagtagtttttgccgcgaggcaggcggaagtagcccttttc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1195 gcactcctcagcaatgaagcagtagtttttgccgcgaggcaggcggaagtagcccttttc 1136 Query: 181 gccccaggtgtcgtcccaggagttcttgacgatccagtaatcctgtcctttctccgatcc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1135 gccccaggtgtcgtcccaggagttcttgacgatccagtaatcctgtcctttctccgatcc 1076 Query: 241 gtaaccgacgaccagaatggagtggttcggctcgcccttgttgcactcatcgtcgttata 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1075 gtaaccgacgaccagaatggagtggttcggctcgcccttgttgcactcatcgtcgttata 1016 Query: 301 gatgccaccggcgtagttcttaagagtctccaaaccattcaccgaacaggcaactggtcc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1015 gatgccaccggcgtagttcttaagagtctccaaaccattcaccgaacaggcaactggtcc 956 Query: 361 cagagtggccaccaccttcttcagctgctcctcgtccttg 400 |||||||||||||||||||||||||||||||||||||||| Sbjct: 955 cagagtggccaccaccttcttcagctgctcctcgtccttg 916 >CG4847-RB feature: mRNA loc=2R:join(12576151..12576440,12576501..12576709, 12576775..12577584);ID=FBan0004847;gene_id=FBgn0034229;ge ne_sym=CG4847;sym=CG4847;scaffold=AE003803;len=1309 Length = 1309 Score = 793 bits (400), Expect = 0.0 Identities = 400/400 (100%) Strand = Plus / Minus Query: 1 ataattaagaaaagacttttatttaagaaatggacgcaaccaacgccaagtccacatcac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1307 ataattaagaaaagacttttatttaagaaatggacgcaaccaacgccaagtccacatcac 1248 Query: 61 aaactgcacagtaaattttgccataaatttcggattccccgcttaaaccacgggatagga 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1247 aaactgcacagtaaattttgccataaatttcggattccccgcttaaaccacgggatagga 1188 Query: 121 gcactcctcagcaatgaagcagtagtttttgccgcgaggcaggcggaagtagcccttttc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1187 gcactcctcagcaatgaagcagtagtttttgccgcgaggcaggcggaagtagcccttttc 1128 Query: 181 gccccaggtgtcgtcccaggagttcttgacgatccagtaatcctgtcctttctccgatcc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1127 gccccaggtgtcgtcccaggagttcttgacgatccagtaatcctgtcctttctccgatcc 1068 Query: 241 gtaaccgacgaccagaatggagtggttcggctcgcccttgttgcactcatcgtcgttata 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1067 gtaaccgacgaccagaatggagtggttcggctcgcccttgttgcactcatcgtcgttata 1008 Query: 301 gatgccaccggcgtagttcttaagagtctccaaaccattcaccgaacaggcaactggtcc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1007 gatgccaccggcgtagttcttaagagtctccaaaccattcaccgaacaggcaactggtcc 948 Query: 361 cagagtggccaccaccttcttcagctgctcctcgtccttg 400 |||||||||||||||||||||||||||||||||||||||| Sbjct: 947 cagagtggccaccaccttcttcagctgctcctcgtccttg 908 >CG4847-RA feature: mRNA loc=2R:join(12575248..12575269,12576177..12576440, 12576501..12576709, 12576775..12577584);ID=FBan0004847;gene_id=FBgn0034229;ge ne_sym=CG4847;sym=CG4847;scaffold=AE003803;len=1305 Length = 1305 Score = 793 bits (400), Expect = 0.0 Identities = 400/400 (100%) Strand = Plus / Minus Query: 1 ataattaagaaaagacttttatttaagaaatggacgcaaccaacgccaagtccacatcac 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1303 ataattaagaaaagacttttatttaagaaatggacgcaaccaacgccaagtccacatcac 1244 Query: 61 aaactgcacagtaaattttgccataaatttcggattccccgcttaaaccacgggatagga 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1243 aaactgcacagtaaattttgccataaatttcggattccccgcttaaaccacgggatagga 1184 Query: 121 gcactcctcagcaatgaagcagtagtttttgccgcgaggcaggcggaagtagcccttttc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1183 gcactcctcagcaatgaagcagtagtttttgccgcgaggcaggcggaagtagcccttttc 1124 Query: 181 gccccaggtgtcgtcccaggagttcttgacgatccagtaatcctgtcctttctccgatcc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1123 gccccaggtgtcgtcccaggagttcttgacgatccagtaatcctgtcctttctccgatcc 1064 Query: 241 gtaaccgacgaccagaatggagtggttcggctcgcccttgttgcactcatcgtcgttata 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1063 gtaaccgacgaccagaatggagtggttcggctcgcccttgttgcactcatcgtcgttata 1004 Query: 301 gatgccaccggcgtagttcttaagagtctccaaaccattcaccgaacaggcaactggtcc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1003 gatgccaccggcgtagttcttaagagtctccaaaccattcaccgaacaggcaactggtcc 944 Query: 361 cagagtggccaccaccttcttcagctgctcctcgtccttg 400 |||||||||||||||||||||||||||||||||||||||| Sbjct: 943 cagagtggccaccaccttcttcagctgctcctcgtccttg 904 >Pof-RA feature: mRNA loc=2R:join(19712984..19713415,19713470..19714354, 19714416..19714607, 19714666..19715086);ID=FBan0003691;gene_id=FBgn0035047;g ene_sym=Pof;sym=CG3691;scaffold=AE003464;len=1930 Length = 1930 Score = 369 bits (186), Expect = e-101 Identities = 195/198 (98%) Strand = Plus / Plus Query: 401 tatagaacagacttttccagtttccacaactttagctaggaacacgttccacatttttcc 460 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 74 tatagaacagacttttccagtttccacaactttagctaggaacacgttccacatttttcc 133 Query: 461 acatttttgataccttaacaaaatggattcaaaacgcgcggcccttgaatccggcgacgg 520 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 134 acatttttgataccttaacaaaatggattcaaaacgcgcggcccttgaatccggcgacgg 193 Query: 521 tccggacgccaagcgccttgataccaccgatgatcaagacaaatatacgtcggggggcga 580 ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct: 194 tccggacgccaagcgccttgataccaccgatgatcaagacaaagaagcgtcggggggcga 253 Query: 581 cggcagtcaggttatgct 598 |||||||||||||||||| Sbjct: 254 cggcagtcaggttatgct 271 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,444 Number of Sequences: 18737 Number of extensions: 14444 Number of successful extensions: 378 Number of sequences better than 1.0e-100: 6 Number of HSP's better than 0.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 372 Number of HSP's gapped (non-prelim): 6 length of query: 598 length of database: 41,270,998 effective HSP length: 17 effective length of query: 581 effective length of database: 40,952,469 effective search space: 23793384489 effective search space used: 23793384489 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI388726|AI388726 GH19718.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH19718 5, mRNA sequence. (698 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done ***** No hits found ****** Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,762 Number of Sequences: 18737 Number of extensions: 15762 Number of successful extensions: 438 Number of sequences better than 1.0e-100: 0 Number of HSP's better than 0.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 438 Number of HSP's gapped (non-prelim): 0 length of query: 698 length of database: 41,270,998 effective HSP length: 17 effective length of query: 681 effective length of database: 40,952,469 effective search space: 27888631389 effective search space used: 27888631389 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI388952|AI388952 GH20014.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH20014 5, mRNA sequence. (559 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31538-RA feature: mRNA loc=3R:complement(1101391..1103554);ID=... 1108 0.0 >CG31538-RA feature: mRNA loc=3R:complement(1101391..1103554);ID=FBan0031538;gene_ id=FBgn0051538;gene_sym=CG31538;sym=CG31538;scaffold=AE0 03603;len=2164 Length = 2164 Score = 1108 bits (559), Expect = 0.0 Identities = 559/559 (100%) Strand = Plus / Plus Query: 1 agctctccaaaatagaaaattcgaatttatttattcagtgttttgttggtcttacgagtc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 91 agctctccaaaatagaaaattcgaatttatttattcagtgttttgttggtcttacgagtc 150 Query: 61 cgtgaaatcgagttctttagtccgtgaagaaacgtgcttcgttttcgcaggtttttgcta 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 151 cgtgaaatcgagttctttagtccgtgaagaaacgtgcttcgttttcgcaggtttttgcta 210 Query: 121 aattgttcgtgtatccattggttcacattatgagtactcatcagtatagcctggggaggc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 211 aattgttcgtgtatccattggttcacattatgagtactcatcagtatagcctggggaggc 270 Query: 181 tggcccgccgaggcttcagcctgcggatgaatccgctggccggcacactgcaaaggcttt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 271 tggcccgccgaggcttcagcctgcggatgaatccgctggccggcacactgcaaaggcttt 330 Query: 241 accacacccgtagcaggccatgtgtggcccagagtgtgagccaggtgggtgaacggtcca 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 331 accacacccgtagcaggccatgtgtggcccagagtgtgagccaggtgggtgaacggtcca 390 Query: 301 agccaacgttgcagccctacgacttcgaccgaagccgggtgcgtaaaattgccggcgaga 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 391 agccaacgttgcagccctacgacttcgaccgaagccgggtgcgtaaaattgccggcgaga 450 Query: 361 ggaagacgctggtcgaccaggtgcggggcatgagcacaagcctgggacatgccaagttgg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 451 ggaagacgctggtcgaccaggtgcggggcatgagcacaagcctgggacatgccaagttgg 510 Query: 421 tgccccaaaagatgtacggcaagacgaggctgttctcctccggaagcaccctctacagtc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 511 tgccccaaaagatgtacggcaagacgaggctgttctcctccggaagcaccctctacagtc 570 Query: 481 gcttgcagcatctggaacagcagaacgaggaatattcgagtcgagagtcccagccgacgc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 571 gcttgcagcatctggaacagcagaacgaggaatattcgagtcgagagtcccagccgacgc 630 Query: 541 acaccacagcctcattgtc 559 ||||||||||||||||||| Sbjct: 631 acaccacagcctcattgtc 649 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,969 Number of Sequences: 18737 Number of extensions: 11969 Number of successful extensions: 194 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 193 Number of HSP's gapped (non-prelim): 1 length of query: 559 length of database: 41,270,998 effective HSP length: 17 effective length of query: 542 effective length of database: 40,952,469 effective search space: 22196238198 effective search space used: 22196238198 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI389134|AI389134 GH20229.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH20229 3prime, mRNA sequence. (535 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG4286-RA feature: mRNA loc=2R:complement(16221290..16221677,162... 957 0.0 >CG4286-RA feature: mRNA loc=2R:complement(16221290..16221677, 16221740..16222180);ID=FBan0004286;gene_id=FBgn0034601;g ene_sym=CG4286;sym=CG4286;scaffold=AE003453;len=829 Length = 829 Score = 957 bits (483), Expect = 0.0 Identities = 522/535 (97%) Strand = Plus / Plus Query: 1 aaacattccactcgaaacgagctactcccccaaattcgaacccccttccaaccatccgcc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 12 aaacattccactcgaaacgagctactcccccaaattcgaacccccttccaaccatccgcc 71 Query: 61 cctccattcattttggagaaccaaagtcatggggcaccgcctccagctccgtagcgatga 120 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 72 cctccattcatcttggagaaccaaagtcatggcgcaccgcctccagctccgtagcgatga 131 Query: 121 cttcgacgttatcggcgccgggccccgcaatctgtccgtgatcaaaaacttcctgaagcg 180 |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct: 132 cttcgacgttatcggcgccgtgccccgcaatctgtccgtgatcaagaacttcctgaagcg 191 Query: 181 ggactgggccatcaagaaactgatcgacatcgaggaagagttcctgcaggaatgcgtatt 240 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 192 ggactgtgccatcaagaaactgatcgacatcgaggaagagttcctgcaggaatgcgtatt 251 Query: 241 gcgcggccaggatcccatgaatccgaagggtaaacgtgacagtgacagggggccacatgg 300 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 252 gcgcggccaggatcccatgaatccgaagggtaaacgtgacagtgacagtgggccacatgg 311 Query: 301 taggggtttgggatccaatgggcccgaacccaagccggatccatgtgctaccaagacacc 360 ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 312 tagtggtttgggatccaatgtgcccgaacccaagccggatccatgtgctaccaagacacc 371 Query: 361 ggagaacacattggcctccgactactgtgatccctgtcgccgactcaagacctccggggg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 372 ggagaacacattggcctccgactactgtgatccctgtcgccgactcaagacctccgtggt 431 Query: 421 tcccgaagagctaaccaagccggccatcacaaatccgggtttcaacaaatccctgccgcc 480 || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 432 tctcgaagagctaaccaagccggccatcacaaatccggctttcaacaaatccctgccgcc 491 Query: 481 gtacttcgatgaagagagcgtgatgggcaactcgttgcccgtgaagatccgtttc 535 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 492 gtacttcgatgaagagagcgtgatgggcaactcgttgcccgtgaagttccgtttc 546 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 11,019 Number of Sequences: 18737 Number of extensions: 11019 Number of successful extensions: 230 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 229 Number of HSP's gapped (non-prelim): 1 length of query: 535 length of database: 41,270,998 effective HSP length: 17 effective length of query: 518 effective length of database: 40,952,469 effective search space: 21213378942 effective search space used: 21213378942 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI389148|AI389148 GH20248.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH20248 5 similar to CG5839: FBan0005839 'peptidase' located on: 3R 93F4-93F6;: 04/10/2001, mRNA sequence. (683 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31343-RA feature: mRNA loc=3R:join(17561955..17562541,17562872... 1354 0.0 >CG31343-RA feature: mRNA loc=3R:join(17561955..17562541,17562872..17563027, 17563160..17563873,17564076..17565303, 17565374..17565687);ID=FBan0031343;gene_id=FBgn0051343;ge ne_sym=CG31343;sym=CG31343;scaffold=AE003736;len=2999 Length = 2999 Score = 1354 bits (683), Expect = 0.0 Identities = 683/683 (100%) Strand = Plus / Plus Query: 1 ctgtacgatacgtacatctttgtcagcaccgatcgcctgagccacagcatcctgctggag 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1933 ctgtacgatacgtacatctttgtcagcaccgatcgcctgagccacagcatcctgctggag 1992 Query: 61 ctgctgggttacctgactaatgagcagcagtatgctccttggtccactgccaacactatt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1993 ctgctgggttacctgactaatgagcagcagtatgctccttggtccactgccaacactatt 2052 Query: 121 ctgaccgtctacgatcgttacttgcgtggcgatgattcttactacaacttccaagatttc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2053 ctgaccgtctacgatcgttacttgcgtggcgatgattcttactacaacttccaagatttc 2112 Query: 181 gtgaagcgcctgatcgatcccatcttcgataaaatcggtgtaaacgagattcccggcgag 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2113 gtgaagcgcctgatcgatcccatcttcgataaaatcggtgtaaacgagattcccggcgag 2172 Query: 241 cattatctgaacaactatctgcgcatcgtgctggtcagcttggcctgccaggtgggatcc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2173 cattatctgaacaactatctgcgcatcgtgctggtcagcttggcctgccaggtgggatcc 2232 Query: 301 gatgattgctataaccagtcggccaataaattatccgagtacctatacaatggcacagcc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2233 gatgattgctataaccagtcggccaataaattatccgagtacctatacaatggcacagcc 2292 Query: 361 attgaggccactctaaagactcaagcctactgtgctggtctccgatcgactaccaatgaa 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2293 attgaggccactctaaagactcaagcctactgtgctggtctccgatcgactaccaatgaa 2352 Query: 421 atctatagcagagtgcagtccgatttgctcagttcctcagattccaccgatcgcagcctg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2353 atctatagcagagtgcagtccgatttgctcagttcctcagattccaccgatcgcagcctg 2412 Query: 481 ttcatctcctcgttgggctgctctggaagtacgagccagctgcttgatttcttgagacta 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2413 ttcatctcctcgttgggctgctctggaagtacgagccagctgcttgatttcttgagacta 2472 Query: 541 tccctggacaccaacaatagcttgagctactcggagcgcacttcccttctaaactcggcc 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2473 tccctggacaccaacaatagcttgagctactcggagcgcacttcccttctaaactcggcc 2532 Query: 601 tattcccgcagtgaaatcggtcttaccgctagtttggaattcctggagagcaactgggag 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2533 tattcccgcagtgaaatcggtcttaccgctagtttggaattcctggagagcaactgggag 2592 Query: 661 gcatatgccaacctttcagactc 683 ||||||||||||||||||||||| Sbjct: 2593 gcatatgccaacctttcagactc 2615 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,048 Number of Sequences: 18737 Number of extensions: 16048 Number of successful extensions: 403 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 402 Number of HSP's gapped (non-prelim): 1 length of query: 683 length of database: 41,270,998 effective HSP length: 17 effective length of query: 666 effective length of database: 40,952,469 effective search space: 27274344354 effective search space used: 27274344354 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI389169|AI389169 GH20274.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH20274 5, mRNA sequence. (208 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CCR4-RD feature: mRNA loc=3R:complement(20013967..20015592,20015... 412 e-115 >CCR4-RD feature: mRNA loc=3R:complement(20013967..20015592,20015654..20015966, 20016262..20016330, 20016921..20017381);ID=FBan0031137;gene_id=FBgn0039168;g ene_sym=CCR4;sym=CG31137;scaffold=AE003746;len=2469 Length = 2469 Score = 412 bits (208), Expect = e-115 Identities = 208/208 (100%) Strand = Plus / Plus Query: 1 ccgcttcgtgttcatagcgtcagagaggagtccgaaccgctggccatcggagagattagg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ccgcttcgtgttcatagcgtcagagaggagtccgaaccgctggccatcggagagattagg 60 Query: 61 ttccacattcccactgccactgtatcgctgtatcgccgagcggtgcacccagttcgtttg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ttccacattcccactgccactgtatcgctgtatcgccgagcggtgcacccagttcgtttg 120 Query: 121 caagccgtggcgccctttgctgcggcacaatgttgtaagcaacggcccagtcacggctac 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 caagccgtggcgccctttgctgcggcacaatgttgtaagcaacggcccagtcacggctac 180 Query: 181 caattcgagaaacggtggcgcgggtgtg 208 |||||||||||||||||||||||||||| Sbjct: 181 caattcgagaaacggtggcgcgggtgtg 208 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4092 Number of Sequences: 18737 Number of extensions: 4092 Number of successful extensions: 271 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 270 Number of HSP's gapped (non-prelim): 1 length of query: 208 length of database: 41,270,998 effective HSP length: 16 effective length of query: 192 effective length of database: 40,971,206 effective search space: 7866471552 effective search space used: 7866471552 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 184 (365.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI389231|AI389231 GH20356.3prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH20356 3prime, mRNA sequence. (352 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CR32657-RA feature: ncRNA loc=X:join(11817871..11817936,11818011... 678 0.0 >CR32657-RA feature: ncRNA loc=X:join(11817871..11817936,11818011..11818099, 11818158..11818355);ID=FBan0032657;gene_id=FBgn0052657;g ene_sym=CR32657;sym=CR32657;type=ncRNA;scaffold=AE003488 ;len=353 Length = 353 Score = 678 bits (342), Expect = 0.0 Identities = 342/342 (100%) Strand = Plus / Minus Query: 2 gatttaacaatattttatttttaatccatataagcgcacattaagccatataaacccata 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 353 gatttaacaatattttatttttaatccatataagcgcacattaagccatataaacccata 294 Query: 62 tatgatattagtatgtagtttttagccgatttgtgtatcacatgttagaatcgatgcaag 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 293 tatgatattagtatgtagtttttagccgatttgtgtatcacatgttagaatcgatgcaag 234 Query: 122 ctactcgtccaacgggaccggttccatcgattcgattgtattgtaattagtgtagtccag 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 233 ctactcgtccaacgggaccggttccatcgattcgattgtattgtaattagtgtagtccag 174 Query: 182 tcatggaattgtcaggtgttttttcgtgttgccggagctataaaaccacttgccattgct 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 173 tcatggaattgtcaggtgttttttcgtgttgccggagctataaaaccacttgccattgct 114 Query: 242 ttacaaaaagcaatggcgagtatttaagttatcaaaagggtgaaactcaattacacaata 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 113 ttacaaaaagcaatggcgagtatttaagttatcaaaagggtgaaactcaattacacaata 54 Query: 302 atttggaaatttttacattttttgttacgaaacgagttgtgc 343 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 53 atttggaaatttttacattttttgttacgaaacgagttgtgc 12 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7741 Number of Sequences: 18737 Number of extensions: 7741 Number of successful extensions: 667 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 666 Number of HSP's gapped (non-prelim): 1 length of query: 352 length of database: 41,270,998 effective HSP length: 17 effective length of query: 335 effective length of database: 40,952,469 effective search space: 13719077115 effective search space used: 13719077115 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI389333|AI389333 GH20473.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH20473 5prime, mRNA sequence. (593 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG9920-RA feature: mRNA loc=3R:complement(9923027..9923651,99237... 1114 0.0 >CG9920-RA feature: mRNA loc=3R:complement(9923027..9923651, 9923726..9923821);ID=FBan0009920;gene_id=FBgn0038200;gen e_sym=CG9920;sym=CG9920;scaffold=AE003703;len=721 Length = 721 Score = 1114 bits (562), Expect = 0.0 Identities = 583/593 (98%) Strand = Plus / Plus Query: 1 aacaacatcgttcttccaaaattnnnnnnnnnttatataataattataaaaagtgaaaaa 60 ||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 13 aacaacatcgttcttccaaaattaaaaaaaaattatataataattataaaaagtgaaaaa 72 Query: 61 catagtaaaactctcacaaacaagaaacgatgtccaacgttattaagaaggtgattccca 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 73 catagtaaaactctcacaaacaagaaacgatgtccaacgttattaagaaggtgattccca 132 Query: 121 tgctggaccgcattctaatccagcgtttcgaggtgaagaccaccaccgcgggcggcatcc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 133 tgctggaccgcattctaatccagcgtttcgaggtgaagaccaccaccgcgggcggcatcc 192 Query: 181 tgctgcccgaggagtcggtgcccaaggagatgcagggcgtggtggttgccgtcggacccg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 193 tgctgcccgaggagtcggtgcccaaggagatgcagggcgtggtggttgccgtcggacccg 252 Query: 241 gagcccgcaatcctgctggagctggacacttgtccgttggcgtcaaggagggcgatcgcg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 253 gagcccgcaatcctgctggagctggacacttgtccgttggcgtcaaggagggcgatcgcg 312 Query: 301 tgctgttgcccaaatacggtggaactaaggtcgatatggacgacaagcgcgagtatgttc 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 313 tgctgttgcccaaatacggtggaactaaggtcgatatggacgacaagcgcgagtatgttc 372 Query: 361 tgttccgcgagagcgatatccttgctaaactggaatagatttgcaacactttccgaaaca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 373 tgttccgcgagagcgatatccttgctaaactggaatagatttgcaacactttccgaaaca 432 Query: 421 tcaaagccgatatacacgatatacatataatgctccaagcaatactcatcctcctatctc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 433 tcaaagccgatatacacgatatacatataatgctccaagcaatactcatcctcctatctc 492 Query: 481 gtcacttatcttcggtggagactgtcattttgcttccgaattgcgttcgaaactaaatga 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 493 gtcacttatcttcggtggagactgtcattttgcttccgaattgcgttcgaaactaaatga 552 Query: 541 ttataatgaaatgttatatttgggaaatggccaatctacacactccacacact 593 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 553 ttataatgaaatgttatatttggtaaatggccaatctacacactccacacact 605 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 16,350 Number of Sequences: 18737 Number of extensions: 16350 Number of successful extensions: 394 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 392 Number of HSP's gapped (non-prelim): 2 length of query: 593 length of database: 41,270,998 effective HSP length: 17 effective length of query: 576 effective length of database: 40,952,469 effective search space: 23588622144 effective search space used: 23588622144 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI402299|AI402299 GH21304.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH21304 5prime, mRNA sequence. (566 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value rab3-GEF-RA feature: mRNA loc=X:join(14824267..14824389,14824570... 1051 0.0 >rab3-GEF-RA feature: mRNA loc=X:join(14824267..14824389,14824570..14824903, 14825128..14825627,14825681..14826042,14826101..14826258, 14828653..14829779,14829848..14830051,14830263..14830313, 14830827..14831196,14831257..14831642,14831704..14832186, 14832614..14832709,14833027..14833284,14833343..14833582, 14833647..14833919,14833991..14834158,14840711..14840783, 14840861..14840907, 14842082..14844776);ID=FBan0005627;gene_id=FBgn0030613;ge ne_sym=rab3-GEF;sym=CG5627;scaffold=AE003498;len=7948 Length = 7948 Score = 1051 bits (530), Expect = 0.0 Identities = 556/566 (98%), Gaps = 9/566 (1%) Strand = Plus / Plus Query: 1 cctccttggaaagagtcatattggcttggtgtactcccaggatgtgcacaatgtggtcga 60 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 4617 cctccttggaaagagtcatattggcttggtgtactcccaggaggtgcacaatgtggtcga 4676 Query: 61 tcagataaacaatctgaatggaaatgacattgatctaaagcccttgggttcacgattgct 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4677 tcagataaacaatctgaatggaaatgacattgatctaaagcccttgggttcacgattgct 4736 Query: 121 gcaccgccagagcttcaccgtccaccagggcacagatgtgaacggaccactacgatttat 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4737 gcaccgccagagcttcaccgtccaccagggcacagatgtgaacggaccactacgatttat 4796 Query: 181 ggaggtgcgggacgatggtctggtactccgatcagtggatggcaccattgtggagcgctg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4797 ggaggtgcgggacgatggtctggtactccgatcagtggatggcaccattgtggagcgctg 4856 Query: 241 gtggtacgagcggctggtcaacatgacctattcacccaagaccaagctgctctgcctgtg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4857 gtggtacgagcggctggtcaacatgacctattcacccaagaccaagctgctctgcctgtg 4916 Query: 301 gcgccgcaatggcggtcagacgcaattgcacaaatactacacacgaaagtgcaaggagct 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4917 gcgccgcaatggcggtcagacgcaattgcacaaatactacacacgaaagtgcaaggagct 4976 Query: 361 gtacaattgcatcaaggaggccatggaacggggcggcacgcccaccaatgtacccgagct 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4977 gtacaattgcatcaaggaggccatggaacggggcggcacgcccaccaatgtacccgagct 5036 Query: 421 gggcggcgagtttcccgttcaggacatgaacacaggcgagggcggcctgctgcaggtgtg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5037 gggcggcgagtttcccgttcaggacatgaacacaggcgagggcggcctgctgcaggtgtg 5096 Query: 481 cctcgagggtgtcggtttgttgttctccaacagcaaggatttcgagtttttcgtccgatt 540 ||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 5097 cctcgagggtgtcggtttgttgttctccaacagca---------agtttttcgtccgatt 5147 Query: 541 ggaccacatccgcaagtgcttcaccc 566 |||||||||||||||||||||||||| Sbjct: 5148 ggaccacatccgcaagtgcttcaccc 5173 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,668 Number of Sequences: 18737 Number of extensions: 15668 Number of successful extensions: 425 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 423 Number of HSP's gapped (non-prelim): 2 length of query: 566 length of database: 41,270,998 effective HSP length: 17 effective length of query: 549 effective length of database: 40,952,469 effective search space: 22482905481 effective search space used: 22482905481 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI402611|AI402611 GH21860.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH21860 5 similar to EG:4F1.1: FBan0014808 'cell adhesion' located on: X 1F4-1F4;: 04/10/2001, mRNA sequence. (549 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Scgdelta-RA feature: mRNA loc=X:complement(1503163..1503351,1503... 888 0.0 >Scgdelta-RA feature: mRNA loc=X:complement(1503163..1503351,1503459..1503582, 1504804..1505065,1506469..1506589,1506667..1507256, 1510488..1510811);ID=FBan0014808;gene_id=FBgn0025391;gen e_sym=Scgdelta;sym=CG14808;scaffold=AE003421;len=1610 Length = 1610 Score = 888 bits (448), Expect = 0.0 Identities = 468/478 (97%) Strand = Plus / Plus Query: 72 tgttccaagatttcccaattcaatagtttcgaaaaatcgttttcgagtgnnnnnnnnnng 131 ||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 72 tgttccaagatttcccaattcaatagtttcgaaaaatcgttttcgagtgttttttttttg 131 Query: 132 tctgtgctttctggttttcgctgcctgctgagccatctgactagcgcgcctcccgttcat 191 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 132 tctgtgctttctggttttcgctgcctgctgagccatctgactagcgcgcctcccgttcat 191 Query: 192 ggctggcgtttggaattgtgaaggtcagcgcgtcgtcgcgatcggactcccatttcagtg 251 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 192 ggctggcgtttggaattgtgaaggtcagcgcgtcgtcgcgatcggactcccatttcagtg 251 Query: 252 tgtgtcgtaatccggccaagagatcgcgtttgtaaaagatacgaaatctgtttgctcaag 311 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 252 tgtgtcgtaatccggccaagagatcgcgtttgtaaaagatacgaaatctgtttgctcaag 311 Query: 312 acatagtgtaagagatacaggatacgcaaccggagagtcatgcacttcccatgcatccac 371 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 312 acatagtgtaagagatacaggatacgcaaccggagagtcatgcacttcccatgcatccac 371 Query: 372 tagctgcagtgcagcagcgccggaatgttggccgctggcagcagtgagatcactgacttt 431 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 372 tagctgcagtgcagcagcgccggaatgttggccgctggcagcagtgagatcactgacttt 431 Query: 432 gggccacactcgcgccaactaacggctggcaacacgcccaagcgacccaacaaggccagc 491 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 432 gggccacactcgcgccaactaacggctggcaacacgcccaagcgacccaacaaggccagc 491 Query: 492 agccaccgtcctggttctggttctggtcctggcccaatgacaactggtggcaccagct 549 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 492 agccaccgtcctggttctggttctggtcctggcccaatgacaactggtggcaccagct 549 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 12,408 Number of Sequences: 18737 Number of extensions: 12408 Number of successful extensions: 349 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 346 Number of HSP's gapped (non-prelim): 3 length of query: 549 length of database: 41,270,998 effective HSP length: 17 effective length of query: 532 effective length of database: 40,952,469 effective search space: 21786713508 effective search space used: 21786713508 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI403135|AI403135 GH22513.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH22513 5prime, mRNA sequence. (684 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG31740-RA feature: mRNA loc=2L:join(17987011..17987181,17987318... 1033 0.0 >CG31740-RA feature: mRNA loc=2L:join(17987011..17987181, 17987318..17987785);ID=FBan0031740;gene_id=FBgn0051740;g ene_sym=CG31740;sym=CG31740;scaffold=AE003657;len=639 Length = 639 Score = 1033 bits (521), Expect = 0.0 Identities = 537/545 (98%) Strand = Plus / Plus Query: 40 caatatgaaaaattgaacaaaaattctaaattcgtagccaaggattaacttcaacgtatt 99 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 87 caatatgaaaaattgaacaaaaattctaaattcgtagccaaggattaacttcaacgtatt 146 Query: 100 tcttcagcaggnnnnnnnntcccagccgtaccttttgagcccctcctgcagattttagaa 159 ||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 147 tcttcagcaggaaaaaaaatcccagccgtaccttttgagcccctcctgcagattttagaa 206 Query: 160 gagattccagtgtcctttaccaaatccaaactttcaagatggttctgatgctttgctgca 219 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 207 gagattccagtgtcctttaccaaatccaaactttcaagatggttctgatgctttgctgca 266 Query: 220 gcttcgatcccttctacgttggaccctgcccacccggctgcctggctcctttgatgggag 279 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 267 gcttcgatcccttctacgttggaccctgcccacccggctgcctggctcctttgatgggag 326 Query: 280 gaactccctattgcggatgtggtccctgtggaggttgctgtagtccttgctgtggtccat 339 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 327 gaactccctattgcggatgtggtccctgtggaggttgctgtagtccttgctgtggtccat 386 Query: 340 gtggtccttgtggtggctgcagctcgtgtccttgcggctggtgaagcgcccgctatcata 399 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 387 gtggtccttgtggtggctgcagctcgtgtccttgcggctggtgaagcgcccgctatcata 446 Query: 400 ggcattaatacggcagcaagcggtaacaagtcaatttaaagatcaaccttctggaaaaga 459 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 447 ggcattaatacggcagcaagcggtaacaagtcaatttaaagatcaaccttctggaaaaga 506 Query: 460 ctgctggagaaatatgttgctgttcgaattcctttttgccttggccggggctaaaccaac 519 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 507 ctgctggagaaatatgttgctgttcgaattcctttttgccttggccggggctaaaccaac 566 Query: 520 taagctctcgtatacataaagaatttttattataagctgttcagtaataaaatgaattaa 579 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 567 taagctctcgtatacataaagaatttttattataagctgttcagtaataaaatgaattaa 626 Query: 580 agtac 584 ||||| Sbjct: 627 agtac 631 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 15,311 Number of Sequences: 18737 Number of extensions: 15311 Number of successful extensions: 343 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 340 Number of HSP's gapped (non-prelim): 3 length of query: 684 length of database: 41,270,998 effective HSP length: 17 effective length of query: 667 effective length of database: 40,952,469 effective search space: 27315296823 effective search space used: 27315296823 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI403150|AI403150 GH22533.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH22533 5prime, mRNA sequence. (550 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG8069-RA feature: mRNA loc=2R:join(4175010..4175139,4175198..41... 1035 0.0 CG8069-RB feature: mRNA loc=2R:join(4175022..4175930,4175986..41... 944 0.0 >CG8069-RA feature: mRNA loc=2R:join(4175010..4175139,4175198..4175930, 4175986..4176077,4176131..4176407, 4176466..4176784);ID=FBan0008069;gene_id=FBgn0033380;gen e_sym=CG8069;sym=CG8069;scaffold=AE003834;len=1551 Length = 1551 Score = 1035 bits (522), Expect = 0.0 Identities = 541/550 (98%) Strand = Plus / Plus Query: 1 attttctctcgactcgccatnnnnnnnntgatggaactgcacgcaaatgacgttgacctg 60 |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 59 attttctctcgactcgccataaaaaaaatgatggaactgcacgcaaatgacgttgacctg 118 Query: 61 gaggacggcgagctatcggagagcgacgatgatggcgtttacacgccgttgcagcgacct 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 119 gaggacggcgagctatcggagagcgacgatgatggcgtttacacgccgttgcagcgacct 178 Query: 121 gacggtgcggagaaggtggccagtccccttaccacctgccatcagatccagactgcgtta 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 179 gacggtgcggagaaggtggccagtccccttaccacctgccatcagatccagactgcgtta 238 Query: 181 gaggacgagtcacaaagcaacagcgactcctcgactgccgaatcctccgaggacgggtgc 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 239 gaggacgagtcacaaagcaacagcgactcctcgactgccgaatcctccgaggacgggtgc 298 Query: 241 atcaagaagcttcgtacggaatccaccggacccgacggccacaagaagcggaaaaagcgc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 299 atcaagaagcttcgtacggaatccaccggacccgacggccacaagaagcggaaaaagcgc 358 Query: 301 attcggcgcacggtaatgcggcgcgttccgcccacggatgctgaaatgcaaccgaatcga 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 359 attcggcgcacggtaatgcggcgcgttccgcccacggatgctgaaatgcaaccgaatcga 418 Query: 361 gcccgtttcaagaagtacaacgtgtgggcttctgccctgcaagaggatgcgctcagcgag 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 419 gcccgtttcaagaagtacaacgtgtgggcttctgccctgcaagaggatgcgctcagcgag 478 Query: 421 aatatgcgtggctgctacgttacccgaagcggtcgggatcgaaatgttgaaaactacgac 480 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 479 aatatgcgtggctgcgacgttacccgaagcggtcgggatcgaaatgttgaaaactacgac 538 Query: 481 ttctcattgcgataccggctgaacggcgagaacactctaaagcgacgactctcaaactct 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 539 ttctcattgcgataccggctgaacggcgagaacactctaaagcgacgactctcaaactct 598 Query: 541 tcggaggacg 550 |||||||||| Sbjct: 599 tcggaggacg 608 >CG8069-RB feature: mRNA loc=2R:join(4175022..4175930,4175986..4176077, 4176131..4176407, 4176466..4176784);ID=FBan0008069;gene_id=FBgn0033380;gen e_sym=CG8069;sym=CG8069;scaffold=AE003834;len=1597 Length = 1597 Score = 944 bits (476), Expect = 0.0 Identities = 479/480 (99%) Strand = Plus / Plus Query: 71 agctatcggagagcgacgatgatggcgtttacacgccgttgcagcgacctgacggtgcgg 130 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 175 agctatcggagagcgacgatgatggcgtttacacgccgttgcagcgacctgacggtgcgg 234 Query: 131 agaaggtggccagtccccttaccacctgccatcagatccagactgcgttagaggacgagt 190 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 235 agaaggtggccagtccccttaccacctgccatcagatccagactgcgttagaggacgagt 294 Query: 191 cacaaagcaacagcgactcctcgactgccgaatcctccgaggacgggtgcatcaagaagc 250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 295 cacaaagcaacagcgactcctcgactgccgaatcctccgaggacgggtgcatcaagaagc 354 Query: 251 ttcgtacggaatccaccggacccgacggccacaagaagcggaaaaagcgcattcggcgca 310 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 355 ttcgtacggaatccaccggacccgacggccacaagaagcggaaaaagcgcattcggcgca 414 Query: 311 cggtaatgcggcgcgttccgcccacggatgctgaaatgcaaccgaatcgagcccgtttca 370 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 415 cggtaatgcggcgcgttccgcccacggatgctgaaatgcaaccgaatcgagcccgtttca 474 Query: 371 agaagtacaacgtgtgggcttctgccctgcaagaggatgcgctcagcgagaatatgcgtg 430 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 475 agaagtacaacgtgtgggcttctgccctgcaagaggatgcgctcagcgagaatatgcgtg 534 Query: 431 gctgctacgttacccgaagcggtcgggatcgaaatgttgaaaactacgacttctcattgc 490 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 535 gctgcgacgttacccgaagcggtcgggatcgaaatgttgaaaactacgacttctcattgc 594 Query: 491 gataccggctgaacggcgagaacactctaaagcgacgactctcaaactcttcggaggacg 550 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 595 gataccggctgaacggcgagaacactctaaagcgacgactctcaaactcttcggaggacg 654 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,961 Number of Sequences: 18737 Number of extensions: 10961 Number of successful extensions: 226 Number of sequences better than 1.0e-100: 2 Number of HSP's better than 0.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 221 Number of HSP's gapped (non-prelim): 5 length of query: 550 length of database: 41,270,998 effective HSP length: 17 effective length of query: 533 effective length of database: 40,952,469 effective search space: 21827665977 effective search space used: 21827665977 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI403160|AI403160 GH22543.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH22543 5prime similar to D89663: Fruitfly mRNA for myosin light chain kinase isoform-II, partial cds, mRNA sequence. (687 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Strn-Mlck-RF feature: mRNA loc=2R:complement(11010650..11011331,... 1352 0.0 Strn-Mlck-RC feature: mRNA loc=2R:complement(11010650..11011331,... 1352 0.0 Strn-Mlck-RB feature: mRNA loc=2R:complement(11010650..11011331,... 1352 0.0 Strn-Mlck-RA feature: mRNA loc=2R:complement(11010650..11011331,... 1352 0.0 Strn-Mlck-RG feature: mRNA loc=2R:complement(11010650..11011331,... 928 0.0 >Strn-Mlck-RF feature: mRNA loc=2R:complement(11010650..11011331,11011730..11012435, 11012533..11012710,11012766..11012867,11012929..11013270, 11013331..11013849,11013916..11014190,11014883..11015191, 11016561..11016945,11017151..11017562,11017627..11018498, 11018558..11019019);ID=FBan0018255;gene_id=FBgn0013988;ge ne_sym=Strn-Mlck;sym=CG18255;scaffold=AE003808;len=5244 Length = 5244 Score = 1352 bits (682), Expect = 0.0 Identities = 685/686 (99%) Strand = Plus / Plus Query: 1 cccaggcggagttccgtcgaattccgaccacacgcacctacaccagcctcctggtactgc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2226 cccaggcggagttccgtcgaattccgaccacacgcacctacaccagcctcctggtactgc 2285 Query: 61 ccgccatccgtggcaacagctccagttcctcgctggcggccagaagctgcattttgacac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2286 ccgccatccgtggcaacagctccagttcctcgctggcggccagaagctgcattttgacac 2345 Query: 121 gccccgaggactgcaccgccttgatcggtggacatgttcggctgagcgttcgctacgagc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2346 gccccgaggactgcaccgccttgatcggtggacatgttcggctgagcgttcgctacgagc 2405 Query: 181 cattcccgggcaccaaagtcatctggtacaaggcgtgtcatcccattgtggaaagctcca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2406 cattcccgggcaccaaagtcatctggtacaaggcgtgtcatcccattgtggaaagctcca 2465 Query: 241 atgtgacgatccggacgacgagccaacagtcgacgctctacatcacggacatctcggcgg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2466 atgtgacgatccggacgacgagccaacagtcgacgctctacatcacggacatctcggcgg 2525 Query: 301 acgacagcggcaagtatacggttgaggtgatgaacgactatggcgtggaggcagccgctg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2526 acgacagcggcaagtatacggttgaggtgatgaacgactatggcgtggaggcagccgctg 2585 Query: 361 cctcggtggcagtggaaggtcctccggagccaccaagtggccagcccagtgtatcgctgg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2586 cctcggtggcagtggaaggtcctccggagccaccaagtggccagcccagtgtatcgctgg 2645 Query: 421 gtccagatcgcgtggcagtggcctggtgtggtccaccctacgacggtggctgtatgatca 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2646 gtccagatcgcgtggcagtggcctggtgtggtccaccctacgacggtggctgtatgatca 2705 Query: 481 caggttttatcattgagatgcagaccattggcgatgagaactgcgatgaggacagctggc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2706 caggttttatcattgagatgcagaccattggcgatgagaactgcgatgaggacagctggc 2765 Query: 541 agcaggttacccgagtggtggacagcttagcgtacaccgtcaaaaacctccagccggaga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2766 agcaggttacccgagtggtggacagcttagcgtacaccgtcaaaaacctccagccggaga 2825 Query: 601 ggcagtaccgattcagagtgcgtgccgagaatatccatggacgcagtgcacccggccagg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2826 ggcagtaccgattcagagtgcgtgccgagaatatccatggacgcagtgcacccggccagg 2885 Query: 661 ccagcgaactggtacagaataccaat 686 |||||||||||||||||| ||||||| Sbjct: 2886 ccagcgaactggtacagattaccaat 2911 >Strn-Mlck-RC feature: mRNA loc=2R:complement(11010650..11011331,11011730..11012435, 11012533..11012710,11012766..11012867,11012929..11013270, 11013331..11013849,11013916..11014190,11014883..11015191, 11016561..11016945,11017151..11017562,11017627..11018498, 11018558..11018603,11020364..11020532,11021534..11021666, 11021719..11023042,11023514..11023601,11023970..11024142, 11024206..11024913,11025038..11025781,11025842..11026552, 11026762..11028381,11028537..11029295,11029473..11030255, 11030319..11032025);ID=FBan0018255;gene_id=FBgn0013988;gen e_sym=Strn-Mlck;sym=CG18255;scaffold=AE003808;len=13747 Length = 13747 Score = 1352 bits (682), Expect = 0.0 Identities = 685/686 (99%) Strand = Plus / Plus Query: 1 cccaggcggagttccgtcgaattccgaccacacgcacctacaccagcctcctggtactgc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10729 cccaggcggagttccgtcgaattccgaccacacgcacctacaccagcctcctggtactgc 10788 Query: 61 ccgccatccgtggcaacagctccagttcctcgctggcggccagaagctgcattttgacac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10789 ccgccatccgtggcaacagctccagttcctcgctggcggccagaagctgcattttgacac 10848 Query: 121 gccccgaggactgcaccgccttgatcggtggacatgttcggctgagcgttcgctacgagc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10849 gccccgaggactgcaccgccttgatcggtggacatgttcggctgagcgttcgctacgagc 10908 Query: 181 cattcccgggcaccaaagtcatctggtacaaggcgtgtcatcccattgtggaaagctcca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10909 cattcccgggcaccaaagtcatctggtacaaggcgtgtcatcccattgtggaaagctcca 10968 Query: 241 atgtgacgatccggacgacgagccaacagtcgacgctctacatcacggacatctcggcgg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10969 atgtgacgatccggacgacgagccaacagtcgacgctctacatcacggacatctcggcgg 11028 Query: 301 acgacagcggcaagtatacggttgaggtgatgaacgactatggcgtggaggcagccgctg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11029 acgacagcggcaagtatacggttgaggtgatgaacgactatggcgtggaggcagccgctg 11088 Query: 361 cctcggtggcagtggaaggtcctccggagccaccaagtggccagcccagtgtatcgctgg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11089 cctcggtggcagtggaaggtcctccggagccaccaagtggccagcccagtgtatcgctgg 11148 Query: 421 gtccagatcgcgtggcagtggcctggtgtggtccaccctacgacggtggctgtatgatca 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11149 gtccagatcgcgtggcagtggcctggtgtggtccaccctacgacggtggctgtatgatca 11208 Query: 481 caggttttatcattgagatgcagaccattggcgatgagaactgcgatgaggacagctggc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11209 caggttttatcattgagatgcagaccattggcgatgagaactgcgatgaggacagctggc 11268 Query: 541 agcaggttacccgagtggtggacagcttagcgtacaccgtcaaaaacctccagccggaga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11269 agcaggttacccgagtggtggacagcttagcgtacaccgtcaaaaacctccagccggaga 11328 Query: 601 ggcagtaccgattcagagtgcgtgccgagaatatccatggacgcagtgcacccggccagg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11329 ggcagtaccgattcagagtgcgtgccgagaatatccatggacgcagtgcacccggccagg 11388 Query: 661 ccagcgaactggtacagaataccaat 686 |||||||||||||||||| ||||||| Sbjct: 11389 ccagcgaactggtacagattaccaat 11414 >Strn-Mlck-RB feature: mRNA loc=2R:complement(11010650..11011331,11011730..11012435, 11012533..11012710,11012766..11012867, 11012929..11013270,11013331..11013849, 11013916..11014190,11014883..11015191, 11016073..11016243);ID=FBan0018255;gene_id=FBgn0013988;g ene_sym=Strn-Mlck;sym=CG18255;scaffold=AE003808;len=3284 Length = 3284 Score = 1352 bits (682), Expect = 0.0 Identities = 685/686 (99%) Strand = Plus / Plus Query: 1 cccaggcggagttccgtcgaattccgaccacacgcacctacaccagcctcctggtactgc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 266 cccaggcggagttccgtcgaattccgaccacacgcacctacaccagcctcctggtactgc 325 Query: 61 ccgccatccgtggcaacagctccagttcctcgctggcggccagaagctgcattttgacac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 326 ccgccatccgtggcaacagctccagttcctcgctggcggccagaagctgcattttgacac 385 Query: 121 gccccgaggactgcaccgccttgatcggtggacatgttcggctgagcgttcgctacgagc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 386 gccccgaggactgcaccgccttgatcggtggacatgttcggctgagcgttcgctacgagc 445 Query: 181 cattcccgggcaccaaagtcatctggtacaaggcgtgtcatcccattgtggaaagctcca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 446 cattcccgggcaccaaagtcatctggtacaaggcgtgtcatcccattgtggaaagctcca 505 Query: 241 atgtgacgatccggacgacgagccaacagtcgacgctctacatcacggacatctcggcgg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 506 atgtgacgatccggacgacgagccaacagtcgacgctctacatcacggacatctcggcgg 565 Query: 301 acgacagcggcaagtatacggttgaggtgatgaacgactatggcgtggaggcagccgctg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 566 acgacagcggcaagtatacggttgaggtgatgaacgactatggcgtggaggcagccgctg 625 Query: 361 cctcggtggcagtggaaggtcctccggagccaccaagtggccagcccagtgtatcgctgg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 626 cctcggtggcagtggaaggtcctccggagccaccaagtggccagcccagtgtatcgctgg 685 Query: 421 gtccagatcgcgtggcagtggcctggtgtggtccaccctacgacggtggctgtatgatca 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 686 gtccagatcgcgtggcagtggcctggtgtggtccaccctacgacggtggctgtatgatca 745 Query: 481 caggttttatcattgagatgcagaccattggcgatgagaactgcgatgaggacagctggc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 746 caggttttatcattgagatgcagaccattggcgatgagaactgcgatgaggacagctggc 805 Query: 541 agcaggttacccgagtggtggacagcttagcgtacaccgtcaaaaacctccagccggaga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 806 agcaggttacccgagtggtggacagcttagcgtacaccgtcaaaaacctccagccggaga 865 Query: 601 ggcagtaccgattcagagtgcgtgccgagaatatccatggacgcagtgcacccggccagg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 866 ggcagtaccgattcagagtgcgtgccgagaatatccatggacgcagtgcacccggccagg 925 Query: 661 ccagcgaactggtacagaataccaat 686 |||||||||||||||||| ||||||| Sbjct: 926 ccagcgaactggtacagattaccaat 951 >Strn-Mlck-RA feature: mRNA loc=2R:complement(11010650..11011331,11011730..11012435, 11012533..11012710,11012766..11012867,11012929..11013270, 11013331..11013849,11013916..11014190,11014883..11015191, 11016561..11016945,11017151..11017562,11017627..11018498, 11018558..11018603,11020364..11020532,11021534..11021666, 11021719..11023042,11023514..11023601,11023970..11024142, 11024206..11024913,11025038..11025781,11025842..11026552, 11026762..11028381,11028537..11029295,11029473..11030255, 11032801..11047731,11047799..11048011,11048379..11048470, 11048608..11049092,11049199..11049490, 11049587..11049678);ID=FBan0018255;gene_id=FBgn0013988;gen e_sym=Strn-Mlck;sym=CG18255;scaffold=AE003808;len=28145 Length = 28145 Score = 1352 bits (682), Expect = 0.0 Identities = 685/686 (99%) Strand = Plus / Plus Query: 1 cccaggcggagttccgtcgaattccgaccacacgcacctacaccagcctcctggtactgc 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 25127 cccaggcggagttccgtcgaattccgaccacacgcacctacaccagcctcctggtactgc 25186 Query: 61 ccgccatccgtggcaacagctccagttcctcgctggcggccagaagctgcattttgacac 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 25187 ccgccatccgtggcaacagctccagttcctcgctggcggccagaagctgcattttgacac 25246 Query: 121 gccccgaggactgcaccgccttgatcggtggacatgttcggctgagcgttcgctacgagc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 25247 gccccgaggactgcaccgccttgatcggtggacatgttcggctgagcgttcgctacgagc 25306 Query: 181 cattcccgggcaccaaagtcatctggtacaaggcgtgtcatcccattgtggaaagctcca 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 25307 cattcccgggcaccaaagtcatctggtacaaggcgtgtcatcccattgtggaaagctcca 25366 Query: 241 atgtgacgatccggacgacgagccaacagtcgacgctctacatcacggacatctcggcgg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 25367 atgtgacgatccggacgacgagccaacagtcgacgctctacatcacggacatctcggcgg 25426 Query: 301 acgacagcggcaagtatacggttgaggtgatgaacgactatggcgtggaggcagccgctg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 25427 acgacagcggcaagtatacggttgaggtgatgaacgactatggcgtggaggcagccgctg 25486 Query: 361 cctcggtggcagtggaaggtcctccggagccaccaagtggccagcccagtgtatcgctgg 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 25487 cctcggtggcagtggaaggtcctccggagccaccaagtggccagcccagtgtatcgctgg 25546 Query: 421 gtccagatcgcgtggcagtggcctggtgtggtccaccctacgacggtggctgtatgatca 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 25547 gtccagatcgcgtggcagtggcctggtgtggtccaccctacgacggtggctgtatgatca 25606 Query: 481 caggttttatcattgagatgcagaccattggcgatgagaactgcgatgaggacagctggc 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 25607 caggttttatcattgagatgcagaccattggcgatgagaactgcgatgaggacagctggc 25666 Query: 541 agcaggttacccgagtggtggacagcttagcgtacaccgtcaaaaacctccagccggaga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 25667 agcaggttacccgagtggtggacagcttagcgtacaccgtcaaaaacctccagccggaga 25726 Query: 601 ggcagtaccgattcagagtgcgtgccgagaatatccatggacgcagtgcacccggccagg 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 25727 ggcagtaccgattcagagtgcgtgccgagaatatccatggacgcagtgcacccggccagg 25786 Query: 661 ccagcgaactggtacagaataccaat 686 |||||||||||||||||| ||||||| Sbjct: 25787 ccagcgaactggtacagattaccaat 25812 >Strn-Mlck-RG feature: mRNA loc=2R:complement(11010650..11011331,11011730..11012435, 11012533..11012710,11012766..11012867,11012929..11013270, 11013331..11013849,11013916..11014190, 11014333..11014873);ID=FBan0018255;gene_id=FBgn0013988;ge ne_sym=Strn-Mlck;sym=CG18255;scaffold=AE003808;len=3345 Length = 3345 Score = 928 bits (468), Expect = 0.0 Identities = 471/472 (99%) Strand = Plus / Plus Query: 215 gtgtcatcccattgtggaaagctccaatgtgacgatccggacgacgagccaacagtcgac 274 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 gtgtcatcccattgtggaaagctccaatgtgacgatccggacgacgagccaacagtcgac 600 Query: 275 gctctacatcacggacatctcggcggacgacagcggcaagtatacggttgaggtgatgaa 334 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 601 gctctacatcacggacatctcggcggacgacagcggcaagtatacggttgaggtgatgaa 660 Query: 335 cgactatggcgtggaggcagccgctgcctcggtggcagtggaaggtcctccggagccacc 394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 661 cgactatggcgtggaggcagccgctgcctcggtggcagtggaaggtcctccggagccacc 720 Query: 395 aagtggccagcccagtgtatcgctgggtccagatcgcgtggcagtggcctggtgtggtcc 454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 721 aagtggccagcccagtgtatcgctgggtccagatcgcgtggcagtggcctggtgtggtcc 780 Query: 455 accctacgacggtggctgtatgatcacaggttttatcattgagatgcagaccattggcga 514 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 781 accctacgacggtggctgtatgatcacaggttttatcattgagatgcagaccattggcga 840 Query: 515 tgagaactgcgatgaggacagctggcagcaggttacccgagtggtggacagcttagcgta 574 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 841 tgagaactgcgatgaggacagctggcagcaggttacccgagtggtggacagcttagcgta 900 Query: 575 caccgtcaaaaacctccagccggagaggcagtaccgattcagagtgcgtgccgagaatat 634 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 901 caccgtcaaaaacctccagccggagaggcagtaccgattcagagtgcgtgccgagaatat 960 Query: 635 ccatggacgcagtgcacccggccaggccagcgaactggtacagaataccaat 686 |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 961 ccatggacgcagtgcacccggccaggccagcgaactggtacagattaccaat 1012 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 17,547 Number of Sequences: 18737 Number of extensions: 17547 Number of successful extensions: 386 Number of sequences better than 1.0e-100: 5 Number of HSP's better than 0.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 379 Number of HSP's gapped (non-prelim): 7 length of query: 687 length of database: 41,270,998 effective HSP length: 17 effective length of query: 670 effective length of database: 40,952,469 effective search space: 27438154230 effective search space used: 27438154230 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI403373|AI403373 GH22794.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH22794 5 similar to CG10311: FBan0010311 located on: 3R 89B22-89B22;: 04/10/2001, mRNA sequence. (849 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG10311-RA feature: mRNA loc=3R:complement(12176645..12176970,12... 1667 0.0 >CG10311-RA feature: mRNA loc=3R:complement(12176645..12176970,12177618..12177771, 12177829..12178099, 12182540..12182751);ID=FBan0010311;gene_id=FBgn0038420;g ene_sym=CG10311;sym=CG10311;scaffold=AE003713;len=963 Length = 963 Score = 1667 bits (841), Expect = 0.0 Identities = 847/849 (99%) Strand = Plus / Plus Query: 1 ccgtcgcactcacatcgaaatcgcgcgcaagtcgtcggatccaaatcgcctcgaaacgct 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 17 ccgtcgcactcacatcgaaatcgcgcgcaagtcgtcggatccaaatcgcctcgaaacgct 76 Query: 61 acgcacttggaggaggcaaatatcaaatatatgagaataattagttaggaggcagccgaa 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 77 acgcacttggaggaggcaaatatcaaatatatgagaataattagttaggaggcagccgaa 136 Query: 121 tcagcggaatcaaatcgatttccctcgactgcatttagcagtgctgcaccatcaaatcaa 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 137 tcagcggaatcaaatcgatttccctcgactgcatttagcagtgctgcaccatcaaatcaa 196 Query: 181 aaataaattagaaagtctggtaatcacaatatagatttgccaaaatgccgaagccactgt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 197 aaataaattagaaagtctggtaatcacaatatagatttgccaaaatgccgaagccactgt 256 Query: 241 taaattcgtgctgtctgtgccaatcgacccggaatggctccgttatctcgggcatactgg 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 257 taaattcgtgctgtctgtgccaatcgacccggaatggctccgttatctcgggcatactgg 316 Query: 301 cgatagtcctgtcgatcatcaccatcgtggtgatcttcacgacgcgggtgcacttcaaga 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 317 cgatagtcctgtcgatcatcaccatcgtggtgatcttcacgacgcgggtgcacttcaaga 376 Query: 361 cgataatctttgacttcatccccaatgacattgttaagataattctagtcatcaatttgt 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 377 cgataatctttgacttcatccccaatgacattgttaagataattctagtcatcaatttgt 436 Query: 421 gcatgacgatcttgatatcgctgctcatgatcattggtgccctgaagcggaaccactacc 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 437 gcatgacgatcttgatatcgctgctcatgatcattggtgccctgaagcggaaccactacc 496 Query: 481 tgatggttccatgggtggtcctcggcattatgattgccatcggtctgctgatctccgtca 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 497 tgatggttccatgggtggtcctcggcattatgattgccatcggtctgctgatctccgtca 556 Query: 541 tctacacgggcatcgtcttcttcatcgacggctacgtgctgacgggagtcctctggctga 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 557 tctacacgggcatcgtcttcttcatcgacggctacgtgctgacgggagtcctctggctga 616 Query: 601 tcttcggcctaattgtctgcgcgattatgacctattgctggtgcgtggtctatagtgaat 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 617 tcttcggcctaattgtctgcgcgattatgacctattgctggtgcgtggtctatagtgaat 676 Query: 661 acgccaacctgtccgaggagaacgagcgcggtcgttacaacaagcagccgtaccgtcgct 720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 677 acgccaacctgtccgaggagaacgagcgcggtcgttacaacaagcagccgtaccgtcgct 736 Query: 721 agaatctccaggggcactattcatcagaaattgcattcaagaagctgaatccaccaccca 780 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 737 agaatctccaggagcactattcatcagaaattgcattcaagaagctgaatccaccaccca 796 Query: 781 cacatcttcatcctagcttcctatgttcgtttttagtgattatgtctaactaataattat 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 797 cacatcttcatcctagcttcctatgttcgtttttagtgattatgtctaactaataattat 856 Query: 841 aagttagtt 849 || |||||| Sbjct: 857 aatttagtt 865 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 19,281 Number of Sequences: 18737 Number of extensions: 19281 Number of successful extensions: 468 Number of sequences better than 1.0e-100: 1 Number of HSP's better than 0.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 467 Number of HSP's gapped (non-prelim): 1 length of query: 849 length of database: 41,270,998 effective HSP length: 17 effective length of query: 832 effective length of database: 40,952,469 effective search space: 34072454208 effective search space used: 34072454208 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI403422|AI403422 GH22856.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH22856 5 similar to CG9485: FBan0009485 'enzyme' located on: 2R 57D4-57D5;: 04/10/2001, mRNA sequence. (718 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value CG9485-RC feature: mRNA loc=2R:join(16357449..16357530,16357975.... 1415 0.0 CG9485-RB feature: mRNA loc=2R:join(16356972..16357267,16357975.... 1415 0.0 CG9485-RA feature: mRNA loc=2R:join(16356231..16356334,16357975.... 1415 0.0 >CG9485-RC feature: mRNA loc=2R:join(16357449..16357530,16357975..16358315, 16358379..16358736,16358787..16360190,16360248..16361103, 16361160..16361337,16361398..16361567, 16361632..16363120);ID=FBan0009485;gene_id=FBgn0034618;ge ne_sym=CG9485;sym=CG9485;scaffold=AE003453;len=4878 Length = 4878 Score = 1415 bits (714), Expect = 0.0 Identities = 717/718 (99%) Strand = Plus / Plus Query: 1 gtcagacccttcgacacggactcattccgaatcttttggacagcggcagcaagccgagat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3492 gtcagacccttcgacacggactcattccgaatcttttggacagcggcagcaagccgagat 3551 Query: 61 tcaactgccgcgatgctatctggtggtggatgtactgcatcaagcagtatgtggaggatg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3552 tcaactgccgcgatgctatctggtggtggatgtactgcatcaagcagtatgtggaggatg 3611 Query: 121 cccccaagggtgccgagatcctgaaggacaaggtgtcccgcatatttccgtacgacgatg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3612 cccccaagggtgccgagatcctgaaggacaaggtgtcccgcatatttccgtacgacgatg 3671 Query: 181 ccgatgcccatgctccaggtgccttcgaccaacttctcttcgacgtgatgcaggaggcac 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3672 ccgatgcccatgctccaggtgccttcgaccaacttctcttcgacgtgatgcaggaggcac 3731 Query: 241 tgcaggtgcattttcagggcttgcagtatagggggcgcaatgcaggctatgagatcgatg 300 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 3732 tgcaggtgcattttcagggcttgcagtatagggagcgcaatgcaggctatgagatcgatg 3791 Query: 301 cgcacatggtggaccagggctttaacaatcagatcggaattcacccggagactggctttg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3792 cgcacatggtggaccagggctttaacaatcagatcggaattcacccggagactggctttg 3851 Query: 361 tattcggaggcaataacttcaactgcggcacttggatggacaaaatgggatcctcacaga 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3852 tattcggaggcaataacttcaactgcggcacttggatggacaaaatgggatcctcacaga 3911 Query: 421 aggccggaaacaagggacgtccaagtacgccgcgcgacggatcagccgtggagctcgttg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3912 aggccggaaacaagggacgtccaagtacgccgcgcgacggatcagccgtggagctcgttg 3971 Query: 481 gcctccagtatgccgtactccggtttatgcaaagcctagccgaaaaggaggttatcccgt 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3972 gcctccagtatgccgtactccggtttatgcaaagcctagccgaaaaggaggttatcccgt 4031 Query: 541 acaccggcgtggaacgaaagggtccatcgggcgaagtgaccaagtggagctacaaggagt 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4032 acaccggcgtggaacgaaagggtccatcgggcgaagtgaccaagtggagctacaaggagt 4091 Query: 601 gggcggatcgcatcaagaacaactttgacaagtatttctttgtatccgaatcggaaacct 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4092 gggcggatcgcatcaagaacaactttgacaagtatttctttgtatccgaatcggaaacct 4151 Query: 661 gctcggtggccaacaagaagcttatctacaaggacagctatggagccacccagagttg 718 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4152 gctcggtggccaacaagaagcttatctacaaggacagctatggagccacccagagttg 4209 >CG9485-RB feature: mRNA loc=2R:join(16356972..16357267,16357975..16358315, 16358379..16358736,16358787..16360190,16360248..16361103, 16361160..16361337,16361398..16361567, 16361632..16363120);ID=FBan0009485;gene_id=FBgn0034618;ge ne_sym=CG9485;sym=CG9485;scaffold=AE003453;len=5092 Length = 5092 Score = 1415 bits (714), Expect = 0.0 Identities = 717/718 (99%) Strand = Plus / Plus Query: 1 gtcagacccttcgacacggactcattccgaatcttttggacagcggcagcaagccgagat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3706 gtcagacccttcgacacggactcattccgaatcttttggacagcggcagcaagccgagat 3765 Query: 61 tcaactgccgcgatgctatctggtggtggatgtactgcatcaagcagtatgtggaggatg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3766 tcaactgccgcgatgctatctggtggtggatgtactgcatcaagcagtatgtggaggatg 3825 Query: 121 cccccaagggtgccgagatcctgaaggacaaggtgtcccgcatatttccgtacgacgatg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3826 cccccaagggtgccgagatcctgaaggacaaggtgtcccgcatatttccgtacgacgatg 3885 Query: 181 ccgatgcccatgctccaggtgccttcgaccaacttctcttcgacgtgatgcaggaggcac 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3886 ccgatgcccatgctccaggtgccttcgaccaacttctcttcgacgtgatgcaggaggcac 3945 Query: 241 tgcaggtgcattttcagggcttgcagtatagggggcgcaatgcaggctatgagatcgatg 300 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 3946 tgcaggtgcattttcagggcttgcagtatagggagcgcaatgcaggctatgagatcgatg 4005 Query: 301 cgcacatggtggaccagggctttaacaatcagatcggaattcacccggagactggctttg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4006 cgcacatggtggaccagggctttaacaatcagatcggaattcacccggagactggctttg 4065 Query: 361 tattcggaggcaataacttcaactgcggcacttggatggacaaaatgggatcctcacaga 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4066 tattcggaggcaataacttcaactgcggcacttggatggacaaaatgggatcctcacaga 4125 Query: 421 aggccggaaacaagggacgtccaagtacgccgcgcgacggatcagccgtggagctcgttg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4126 aggccggaaacaagggacgtccaagtacgccgcgcgacggatcagccgtggagctcgttg 4185 Query: 481 gcctccagtatgccgtactccggtttatgcaaagcctagccgaaaaggaggttatcccgt 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4186 gcctccagtatgccgtactccggtttatgcaaagcctagccgaaaaggaggttatcccgt 4245 Query: 541 acaccggcgtggaacgaaagggtccatcgggcgaagtgaccaagtggagctacaaggagt 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4246 acaccggcgtggaacgaaagggtccatcgggcgaagtgaccaagtggagctacaaggagt 4305 Query: 601 gggcggatcgcatcaagaacaactttgacaagtatttctttgtatccgaatcggaaacct 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4306 gggcggatcgcatcaagaacaactttgacaagtatttctttgtatccgaatcggaaacct 4365 Query: 661 gctcggtggccaacaagaagcttatctacaaggacagctatggagccacccagagttg 718 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4366 gctcggtggccaacaagaagcttatctacaaggacagctatggagccacccagagttg 4423 >CG9485-RA feature: mRNA loc=2R:join(16356231..16356334,16357975..16358315, 16358379..16358736,16358787..16360190,16360248..16361103, 16361160..16361337,16361398..16361567, 16361632..16363120);ID=FBan0009485;gene_id=FBgn0034618;ge ne_sym=CG9485;sym=CG9485;scaffold=AE003453;len=4900 Length = 4900 Score = 1415 bits (714), Expect = 0.0 Identities = 717/718 (99%) Strand = Plus / Plus Query: 1 gtcagacccttcgacacggactcattccgaatcttttggacagcggcagcaagccgagat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3514 gtcagacccttcgacacggactcattccgaatcttttggacagcggcagcaagccgagat 3573 Query: 61 tcaactgccgcgatgctatctggtggtggatgtactgcatcaagcagtatgtggaggatg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3574 tcaactgccgcgatgctatctggtggtggatgtactgcatcaagcagtatgtggaggatg 3633 Query: 121 cccccaagggtgccgagatcctgaaggacaaggtgtcccgcatatttccgtacgacgatg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3634 cccccaagggtgccgagatcctgaaggacaaggtgtcccgcatatttccgtacgacgatg 3693 Query: 181 ccgatgcccatgctccaggtgccttcgaccaacttctcttcgacgtgatgcaggaggcac 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3694 ccgatgcccatgctccaggtgccttcgaccaacttctcttcgacgtgatgcaggaggcac 3753 Query: 241 tgcaggtgcattttcagggcttgcagtatagggggcgcaatgcaggctatgagatcgatg 300 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 3754 tgcaggtgcattttcagggcttgcagtatagggagcgcaatgcaggctatgagatcgatg 3813 Query: 301 cgcacatggtggaccagggctttaacaatcagatcggaattcacccggagactggctttg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3814 cgcacatggtggaccagggctttaacaatcagatcggaattcacccggagactggctttg 3873 Query: 361 tattcggaggcaataacttcaactgcggcacttggatggacaaaatgggatcctcacaga 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3874 tattcggaggcaataacttcaactgcggcacttggatggacaaaatgggatcctcacaga 3933 Query: 421 aggccggaaacaagggacgtccaagtacgccgcgcgacggatcagccgtggagctcgttg 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3934 aggccggaaacaagggacgtccaagtacgccgcgcgacggatcagccgtggagctcgttg 3993 Query: 481 gcctccagtatgccgtactccggtttatgcaaagcctagccgaaaaggaggttatcccgt 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3994 gcctccagtatgccgtactccggtttatgcaaagcctagccgaaaaggaggttatcccgt 4053 Query: 541 acaccggcgtggaacgaaagggtccatcgggcgaagtgaccaagtggagctacaaggagt 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4054 acaccggcgtggaacgaaagggtccatcgggcgaagtgaccaagtggagctacaaggagt 4113 Query: 601 gggcggatcgcatcaagaacaactttgacaagtatttctttgtatccgaatcggaaacct 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4114 gggcggatcgcatcaagaacaactttgacaagtatttctttgtatccgaatcggaaacct 4173 Query: 661 gctcggtggccaacaagaagcttatctacaaggacagctatggagccacccagagttg 718 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4174 gctcggtggccaacaagaagcttatctacaaggacagctatggagccacccagagttg 4231 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fas ta Posted date: Jul 8, 2004 11:05 AM Number of letters in database: 41,270,998 Number of sequences in database: 18,737 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 18,553 Number of Sequences: 18737 Number of extensions: 18553 Number of successful extensions: 446 Number of sequences better than 1.0e-100: 3 Number of HSP's better than 0.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 443 Number of HSP's gapped (non-prelim): 3 length of query: 718 length of database: 41,270,998 effective HSP length: 17 effective length of query: 701 effective length of database: 40,952,469 effective search space: 28707680769 effective search space used: 28707680769 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 185 (367.2 bits) BLASTN 2.2.5 [Nov-16-2002] Query= embl|AI403607|AI403607 GH23081.5prime GH Drosophila melanogaster head pOT2 Drosophila melanogaster cDNA clone GH23081 5prime similar to Y00831: Drosophila Mst87F gene for put. structural sperm protein, mRNA sequence. (641 letters) Database: /home/rana/data/3.2.0/fasta/dmel_all_transcript_r3.2.0.fasta 18,737 sequences; 41,270,998 total letters Searching......................................done Score E Sequences producing significant alignments: (bits) Value Mst87F-RA feature: mRNA loc=3R:complement(9652886..9653229,96533... 779 0.0 >Mst87F-RA feature: mRNA loc=3R:complement(9652886..9653229, 9653320..9653451);ID=FBan0017956;gene_id=FBgn0002862;gen e_sym=Mst87F;sym=CG17956;scaffold=AE003702;len=476 Length = 476 Score = 779 bits (393), Expect = 0.0 Identities = 393/393 (100%) Strand = Plus / Plus Query: 1 aacacatcaaaatttgtcgtctagtctcaaattatttctttttgttcggttcaaaaactt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 78 aacacatcaaaatttgtcgtctagtctcaaattatttctttttgttcggttcaaaaactt 137 Query: 61 ttacgaattaatcatgtgctgcggaccctgtggaccctgctgcggaccttgctgcggacc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 138 ttacgaattaatcatgtgctgcggaccctgtggaccctgctgcggaccttgctgcggacc 197 Query: 121 ctgctgtggtccatgcggaccatgcggaggaggatgtggaccctgctatggaccgaatgt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 198 ctgctgtggtccatgcggaccatgcggaggaggatgtggaccctgctatggaccgaatgt 257 Query: 181 ctgcggaccatgctatgcctgtggaccctgtggcggctgctattgtggatacccttgctg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 258 ctgcggaccatgctatgcctgtggaccctgtggcggctgctattgtggatacccttgctg 317 Query: 241 ctagacagttgcaactggccatgtccaagaagggttcaccagaacaccaagacgatagga 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 318 ctagacagttgcaactggccatgtccaagaagggttcaccagaacaccaagacgatagga 377 Query: 301 tagaacctatccctatttcatcctcgtattcatctaatattcgtgaaccacaaatatagg 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 378 tagaacctatccctatttcatcctcgtattcatctaatattcgtgaaccacaaatatagg 437 Query: 361 tatttgagacaataaatatgaggtgtaagcttc 393 ||||||||||||||||||||||||||||||||| Sbjct: 438 tatttgagacaataaatatgaggtgtaagcttc 470 Database: /home/rana/data/3.2.0/fasta/dmel_all_transcr